Citrus Sinensis ID: 004369

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------76
Protein Sequence
MASVPWAAAAACTLETKSRQPSSSLATLKDKNHTVSYQRSGSKLIQLNGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEESASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDFGVSF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccHHHHHHcccccccccHHHHHHHHHHccccccHHHHccHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcHHHHHHHHccccHHHHHHHHHcccccccEEHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHcHHccccccccccHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccEEEEEccEEEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccccHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcccHHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEEEEccEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHHHHHHcccccccEEEEEccEEcccHHHHHHHHHHHcccEEEEEcccccEcccccEEcccccEEEc
Coil and Loop (DISEMBL)
MASVPWAAAAACTletksrqpssslatlkdknhtvsyqrsgskliqlngnsepvrslGFQEALSVltegpkvqtSSYVSLLQECvnrkslsnAEIIHAHIVktgshqdfFVMTFLVNVYgkcgnmeeaqkvfdnlprinvVSWTSLISGyvqnsqpeLAIHVFLDMleagnyptnvtLGTALTACSSLESIRLGKQIHAYVVKYqteddtsvgnsLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGAcgengeavQGLRFFSKMLsegiqpneftlTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDdlsahnggtEALSIFSKLnssgmkpdlytFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLlagvrpnqvTFVGALAACSNAGMVYEALGYFEMMQKeykikpvmDHYMCLIDMFVRLGCIEEAFDFIKkmdfepneVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTreeklsetddwswirikdkvysfkpndglhpqsAEIFKVLDELVEKAKCfgykqqesfeltdeesasvyhSEKLAIAFGllntpivspILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKfvnghctcrdfgvsf
Flexible Loop (DISEMBL)
MASVPWAAAAActletksrqpssslatlkdknhtvsYQRSGSKLIQLNGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKkcgrierasrvFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKnltreeklsetddwswiriKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEESASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKiitsltarEIIVRDSkrlhkfvnghctcrdfgvsf
Low Complexity Region (SEG)
MASVPWAAAAACTLETKSRQPSSSLATLKDKNHTVSYQRSGSKLIQLNGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEESASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDFGVSF
Disordered region (IsUnstruct)
**********************************************************FQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDL******TEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTD**SASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDFG***
Disordered Region (DISOPRED)
*ASVPWAAAAACTLETKSRQPSSSLATLKDKNHTVSYQRSGSKLIQLNGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEESASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDFGVSF
Disordered Region (DISEMBL)
MASVPWAAAAACTLE***********TLKDKNHTVSYQRSGSKLIQLNGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEESASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDFGVSF
Disordered Region (DISPRO)
MASVPWAAAAACTLETKSRQPSSSLATLKDKNHTVSYQRSGSKLIQLNGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEESASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDFGVSF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASVPWAAAAACTLETKSRQPSSSLATLKDKNHTVSYQRSGSKLIQLNGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEESASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDFGVSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	758	2.2.26 [Sep-21-2011]
Q5G1T1	850	Pentatricopeptide repeat-	yes	no	0.877	0.782	0.355	1e-132
Q3E6Q1	809	Pentatricopeptide repeat-	no	no	0.885	0.829	0.362	1e-130
Q9SHZ8	786	Pentatricopeptide repeat-	no	no	0.891	0.860	0.326	1e-127
Q9ZUW3	868	Pentatricopeptide repeat-	no	no	0.886	0.774	0.356	1e-126
Q9SVP7	1064	Pentatricopeptide repeat-	no	no	0.890	0.634	0.329	1e-123
O82380	738	Pentatricopeptide repeat-	no	no	0.895	0.920	0.339	1e-122
Q9SMZ2	990	Pentatricopeptide repeat-	no	no	0.878	0.672	0.336	1e-122
Q9CAA8	743	Putative pentatricopeptid	no	no	0.837	0.854	0.345	1e-121
O81767	823	Pentatricopeptide repeat-	no	no	0.907	0.835	0.329	1e-120
Q9LYU9	752	Pentatricopeptide repeat-	no	no	0.893	0.900	0.322	1e-120

>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1

 Score =  473 bits (1216), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/694 (35%), Positives = 401/694 (57%), Gaps = 29/694 (4%)

Query: 77  YVSLLQECVNRKSLSNAEIIHAHIVKTGSHQ-DFFVMTFLVNVYGKCGN-MEEAQKVFDN 134
           Y ++++ C N   +    +    ++KTG  + D  V   L++++ K  N  E A KVFD 
Sbjct: 169 YTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDK 228

Query: 135 LPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLG 194
           +  +NVV+WT +I+  +Q   P  AI  FLDM+ +G      TL +  +AC+ LE++ LG
Sbjct: 229 MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG 288

Query: 195 KQIHAYVVKYQTEDDTSVGNSLCSLYSTC---GSLNSAIKAFNRIREKNVMSWTTVIGAC 251
           KQ+H++ ++    DD  V  SL  +Y+ C   GS++   K F+R+ + +VMSWT +I   
Sbjct: 289 KQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGY 346

Query: 252 GENGE-AVQGLRFFSKMLSEG-IQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYAS 309
            +N   A + +  FS+M+++G ++PN FT +S    CG +   RVG QV     K G AS
Sbjct: 347 MKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLAS 406

Query: 310 NLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGG 369
           N  V NS++ +++K   +++AQ+ F+ +S  NLV++N  + G  + ++            
Sbjct: 407 NSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNF----------- 455

Query: 370 TEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTAL 429
            +A  + S++    +    +TF+S+L+  + + ++ +GEQIH+  +K G   +  V  AL
Sbjct: 456 EQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNAL 515

Query: 430 VNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ 489
           ++MY KCG I+ ASRVF  M  R +ISWTSMITGFA H  + + L+ F  M+  GV+PN+
Sbjct: 516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNE 575

Query: 490 VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIK 549
           VT+V  L+ACS+ G+V E   +F  M +++KIKP M+HY C++D+  R G + +AF+FI 
Sbjct: 576 VTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFIN 635

Query: 550 KMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWED 609
            M F+ + ++W  F+  CR H N ELG  AA ++L+L P +  +Y  L +I+  AG+WE+
Sbjct: 636 TMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEE 695

Query: 610 VAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGY 669
              ++   +E  L +    SWI + DK++ F   D  HP + +I+  LD L+ + K  GY
Sbjct: 696 STEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGY 755

Query: 670 KQQESFELTDEESASVY---------HSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHN 720
                  L   E  +           HSEK+A+AFGL++T    P+ V K+  +C DCHN
Sbjct: 756 VPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHN 815

Query: 721 FIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDF 754
            +K I++++ REI++RD  R H F +G C+C D+
Sbjct: 816 AMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDY 849

May play a role in embryogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1

 Score =  466 bits (1199), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/690 (36%), Positives = 388/690 (56%), Gaps = 19/690 (2%)

Query: 70  PKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQ 129
           P V   +Y  LL+ C +   L   + IH  +VK+G   D F MT L N+Y KC  + EA+
Sbjct: 133 PVVYNFTY--LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEAR 190

Query: 130 KVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLE 189
           KVFD +P  ++VSW ++++GY QN    +A+ +   M E    P+ +T+ + L A S+L 
Sbjct: 191 KVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALR 250

Query: 190 SIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIG 249
            I +GK+IH Y ++   +   ++  +L  +Y+ CGSL +A + F+ + E+NV+SW ++I 
Sbjct: 251 LISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMID 310

Query: 250 ACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYAS 309
           A  +N    + +  F KML EG++P + ++      C  +  L  G  +H L ++LG   
Sbjct: 311 AYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDR 370

Query: 310 NLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNG- 368
           N+ V NS++ +Y KC  VD A  +F  +    LV+WNAMI G AQ            NG 
Sbjct: 371 NVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQ------------NGR 418

Query: 369 GTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTA 428
             +AL+ FS++ S  +KPD +T+ S++T  + L      + IH + +++    +V V TA
Sbjct: 419 PIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTA 478

Query: 429 LVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN 488
           LV+MY KCG I  A  +F  MS R + +W +MI G+  H     AL+LFE+M    ++PN
Sbjct: 479 LVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPN 538

Query: 489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFI 548
            VTF+  ++ACS++G+V   L  F MM++ Y I+  MDHY  ++D+  R G + EA+DFI
Sbjct: 539 GVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFI 598

Query: 549 KKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWE 608
            +M  +P   ++   +  C+ H N+     AAE+L +L P D   + +L +I+ +A  WE
Sbjct: 599 MQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWE 658

Query: 609 DVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFG 668
            V  V+     + L +T   S + IK++V+SF      HP S +I+  L++L+   K  G
Sbjct: 659 KVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAG 718

Query: 669 YKQQESFELTDE----ESASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKI 724
           Y    +  L  E    E     HSEKLAI+FGLLNT   + I V K+  +C DCHN  K 
Sbjct: 719 YVPDTNLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKY 778

Query: 725 ITSLTAREIIVRDSKRLHKFVNGHCTCRDF 754
           I+ +T REI+VRD +R H F NG C+C D+
Sbjct: 779 ISLVTGREIVVRDMQRFHHFKNGACSCGDY 808

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1

 Score =  455 bits (1170), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/768 (32%), Positives = 423/768 (55%), Gaps = 92/768 (11%)

Query: 79  SLLQECVNRKSLS-NAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCG-------------- 123
           +LLQ+ VN+ +    A+++H  ++K+G     ++M  L+NVY K G              
Sbjct: 18  NLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPL 77

Query: 124 -----------------NMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDM 166
                            +M+   + FD LP+ + VSWT++I GY    Q   AI V  DM
Sbjct: 78  RTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDM 137

Query: 167 LEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGS- 225
           ++ G  PT  TL   L + ++   +  GK++H+++VK     + SV NSL ++Y+ CG  
Sbjct: 138 VKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDP 197

Query: 226 ------------------------------LNSAIKAFNRIREKNVMSWTTVIGACGENG 255
                                         ++ A+  F ++ E+++++W ++I    + G
Sbjct: 198 MMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRG 257

Query: 256 EAVQGLRFFSKMLSEGI-QPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVR 314
             ++ L  FSKML + +  P+ FTL S+ S C  +  L +G Q+HS  +  G+  +  V 
Sbjct: 258 YDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVL 317

Query: 315 NSIMYLYLKCGLVDEAQKLFD--GMSHVNLVTWNAMIAGHAQMMDL--AKD--------D 362
           N+++ +Y +CG V+ A++L +  G   + +  + A++ G+ ++ D+  AK+        D
Sbjct: 318 NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRD 377

Query: 363 LSA----------HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHA 412
           + A          H    EA+++F  +   G +P+ YT +++L++ S L +L  G+QIH 
Sbjct: 378 VVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHG 437

Query: 413 LTLKTGFLSDVVVGTALVNMYKKCGRIERASRVF-VEMSTRTLISWTSMITGFANHSLSH 471
             +K+G +  V V  AL+ MY K G I  ASR F +    R  +SWTSMI   A H  + 
Sbjct: 438 SAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAE 497

Query: 472 QALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCL 531
           +AL+LFE ML+ G+RP+ +T+VG  +AC++AG+V +   YF+MM+   KI P + HY C+
Sbjct: 498 EALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACM 557

Query: 532 IDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC 591
           +D+F R G ++EA +FI+KM  EP+ V W   ++ CR H N++LG  AAE+LL L+P++ 
Sbjct: 558 VDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENS 617

Query: 592 ESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSA 651
            +Y+ L +++ + G+WE+ A ++   ++ ++ +   +SWI +K KV+ F   DG HP+  
Sbjct: 618 GAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKN 677

Query: 652 EIFKVLDELVEKAKCFGYKQQESFELTD-----EESASVYHSEKLAIAFGLLNTPIVSPI 706
           EI+  + ++ ++ K  GY    +  L D     +E    +HSEKLAIAFGL++TP  + +
Sbjct: 678 EIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTL 737

Query: 707 LVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDF 754
            ++K+  +C DCH  IK I+ L  REIIVRD+ R H F +G C+CRD+
Sbjct: 738 RIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDY 785

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1

 Score =  454 bits (1167), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/716 (35%), Positives = 399/716 (55%), Gaps = 44/716 (6%)

Query: 48  NGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQ 107
           N  ++P  S  F  AL VL E              E V  + L     +H  +VK G  +
Sbjct: 187 NEGTQP-NSFTFAAALGVLAE--------------EGVGGRGLQ----VHTVVVKNGLDK 227

Query: 108 DFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDML 167
              V   L+N+Y KCGN+ +A+ +FD     +VV+W S+ISGY  N     A+ +F  M 
Sbjct: 228 TIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMR 287

Query: 168 EAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLN 227
                 +  +  + +  C++L+ +R  +Q+H  VVKY    D ++  +L   YS C ++ 
Sbjct: 288 LNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAML 347

Query: 228 SAIKAFNRIR-EKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVC 286
            A++ F  I    NV+SWT +I    +N    + +  FS+M  +G++PNEFT     SV 
Sbjct: 348 DALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTY----SVI 403

Query: 287 GTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWN 346
            T L +   ++VH+  +K  Y  +  V  +++  Y+K G V+EA K+F G+   ++V W+
Sbjct: 404 LTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWS 463

Query: 347 AMIAGHAQMMDLAKDDLSAHNGGTEA-LSIFSKLNSSGMKPDLYTFSSILTICSRLVA-L 404
           AM+AG+AQ             G TEA + +F +L   G+KP+ +TFSSIL +C+   A +
Sbjct: 464 AMLAGYAQ------------TGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASM 511

Query: 405 EQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGF 464
            QG+Q H   +K+   S + V +AL+ MY K G IE A  VF     + L+SW SMI+G+
Sbjct: 512 GQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGY 571

Query: 465 ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV 524
           A H  + +AL +F++M    V+ + VTF+G  AAC++AG+V E   YF++M ++ KI P 
Sbjct: 572 AQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPT 631

Query: 525 MDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLL 584
            +H  C++D++ R G +E+A   I+ M       IW   +A CR H   ELG  AAE+++
Sbjct: 632 KEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKII 691

Query: 585 KLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPND 644
            +KP+D  +Y +L +++  +G W++ A V+ L  E  + +   +SWI +K+K YSF   D
Sbjct: 692 AMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGD 751

Query: 645 GLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTD-----EESASVYHSEKLAIAFGLLN 699
             HP   +I+  L++L  + K  GY+   S+ L D     +E+    HSE+LAIAFGL+ 
Sbjct: 752 RSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIA 811

Query: 700 TPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKF-VNGHCTCRDF 754
           TP  SP+L++K+  +C DCH  IK+I  +  REI+VRDS R H F  +G C+C DF
Sbjct: 812 TPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDF 867

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2

 Score =  443 bits (1139), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/693 (32%), Positives = 387/693 (55%), Gaps = 18/693 (2%)

Query: 68   EGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEE 127
            +G +  +++  SL+  C    +L   + +HA+  K G   +  +   L+N+Y KC ++E 
Sbjct: 383  DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIET 442

Query: 128  AQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSS 187
            A   F      NVV W  ++  Y        +  +F  M      P   T  + L  C  
Sbjct: 443  ALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR 502

Query: 188  LESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTV 247
            L  + LG+QIH+ ++K   + +  V + L  +Y+  G L++A     R   K+V+SWTT+
Sbjct: 503  LGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTM 562

Query: 248  IGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGY 307
            I    +     + L  F +ML  GI+ +E  LT+  S C  + +L+ G Q+H+     G+
Sbjct: 563  IAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGF 622

Query: 308  ASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHN 367
            +S+L  +N+++ LY +CG ++E+   F+     + + WNA+++G  Q         S +N
Sbjct: 623  SSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQ---------SGNN 673

Query: 368  GGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGT 427
               EAL +F ++N  G+  + +TF S +   S    ++QG+Q+HA+  KTG+ S+  V  
Sbjct: 674  --EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCN 731

Query: 428  ALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRP 487
            AL++MY KCG I  A + F+E+ST+  +SW ++I  ++ H    +AL  F+ M+ + VRP
Sbjct: 732  ALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRP 791

Query: 488  NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDF 547
            N VT VG L+ACS+ G+V + + YFE M  EY + P  +HY+C++DM  R G +  A +F
Sbjct: 792  NHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEF 851

Query: 548  IKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRW 607
            I++M  +P+ ++W   ++ C  H NME+G +AA  LL+L+P+D  +Y +L +++  + +W
Sbjct: 852  IQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKW 911

Query: 608  EDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCF 667
            +   + +   +E+ + +    SWI +K+ ++SF   D  HP + EI +   +L ++A   
Sbjct: 912  DARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEI 971

Query: 668  GYKQQESFELTDE------ESASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNF 721
            GY  Q+ F L +E      +     HSEKLAI+FGLL+ P   PI V+K+  +C DCH +
Sbjct: 972  GY-VQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAW 1030

Query: 722  IKIITSLTAREIIVRDSKRLHKFVNGHCTCRDF 754
            IK ++ ++ REIIVRD+ R H F  G C+C+D+
Sbjct: 1031 IKFVSKVSNREIIVRDAYRFHHFEGGACSCKDY 1063

Arabidopsis thaliana (taxid: 3702)

>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1

 Score =  439 bits (1128), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/712 (33%), Positives = 381/712 (53%), Gaps = 33/712 (4%)

Query: 73  QTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMT--FLVNVYGKCGNMEEAQK 130
           + S ++SL++ CV+ + L      H H+++TG+  D +  +  F +       ++E A+K
Sbjct: 29  ERSRHISLIERCVSLRQLKQT---HGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARK 85

Query: 131 VFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDML-EAGNYPTNVTLGTALTACSSLE 189
           VFD +P+ N  +W +LI  Y     P L+I  FLDM+ E+  YP   T    + A + + 
Sbjct: 86  VFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVS 145

Query: 190 SIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIG 249
           S+ LG+ +H   VK     D  V NSL   Y +CG L+SA K F  I+EK+V+SW ++I 
Sbjct: 146 SLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMIN 205

Query: 250 ACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYAS 309
              + G   + L  F KM SE ++ +  T+  + S C  + +L  G QV S   +     
Sbjct: 206 GFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNV 265

Query: 310 NLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMD----------LA 359
           NL + N+++ +Y KCG +++A++LFD M   + VTW  M+ G+A   D          + 
Sbjct: 266 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMP 325

Query: 360 KDDLSAHNG----------GTEALSIFSKLN-SSGMKPDLYTFSSILTICSRLVALEQGE 408
           + D+ A N             EAL +F +L     MK +  T  S L+ C+++ ALE G 
Sbjct: 326 QKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR 385

Query: 409 QIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHS 468
            IH+   K G   +  V +AL++MY KCG +E++  VF  +  R +  W++MI G A H 
Sbjct: 386 WIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHG 445

Query: 469 LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHY 528
             ++A+ +F  M  A V+PN VTF     ACS+ G+V EA   F  M+  Y I P   HY
Sbjct: 446 CGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHY 505

Query: 529 MCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKP 588
            C++D+  R G +E+A  FI+ M   P+  +W   +  C+ H N+ L   A  +LL+L+P
Sbjct: 506 ACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEP 565

Query: 589 KDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHP 648
           ++  ++ +L +I+   G+WE+V+ ++   R   L +    S I I   ++ F   D  HP
Sbjct: 566 RNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 625

Query: 649 QSAEIFKVLDELVEKAKCFGYKQQES--FELTDEESASV----YHSEKLAIAFGLLNTPI 702
            S +++  L E++EK K  GY+ + S   ++ +EE         HSEKLAI +GL++T  
Sbjct: 626 MSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEA 685

Query: 703 VSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDF 754
              I V+K+  +C DCH+  K+I+ L  REIIVRD  R H F NG C+C DF
Sbjct: 686 PKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDF 737

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1

 Score =  438 bits (1126), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/686 (33%), Positives = 386/686 (56%), Gaps = 20/686 (2%)

Query: 76  SYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNL 135
           +++ +L   V   SL+  + +H   +K G      V   L+N+Y K      A+ VFDN+
Sbjct: 317 TFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNM 376

Query: 136 PRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSL-ESIRLG 194
              +++SW S+I+G  QN     A+ +F+ +L  G  P   T+ + L A SSL E + L 
Sbjct: 377 SERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLS 436

Query: 195 KQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGEN 254
           KQ+H + +K     D+ V  +L   YS    +  A   F R    ++++W  ++    ++
Sbjct: 437 KQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQS 495

Query: 255 GEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVR 314
            +  + L+ F+ M  +G + ++FTL ++   CG + ++  G QVH+  IK GY  +L V 
Sbjct: 496 HDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS 555

Query: 315 NSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTE-AL 373
           + I+ +Y+KCG +  AQ  FD +   + V W  MI+G  +            NG  E A 
Sbjct: 556 SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIE------------NGEEERAF 603

Query: 374 SIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMY 433
            +FS++   G+ PD +T +++    S L ALEQG QIHA  LK    +D  VGT+LV+MY
Sbjct: 604 HVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMY 663

Query: 434 KKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFV 493
            KCG I+ A  +F  +    + +W +M+ G A H    + LQLF+ M   G++P++VTF+
Sbjct: 664 AKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFI 723

Query: 494 GALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDF 553
           G L+ACS++G+V EA  +   M  +Y IKP ++HY CL D   R G +++A + I+ M  
Sbjct: 724 GVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSM 783

Query: 554 EPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV 613
           E +  ++   +A CR  G+ E G   A +LL+L+P D  +Y +L +++ +A +W+++ + 
Sbjct: 784 EASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLA 843

Query: 614 KNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQE 673
           + + +  K+ +   +SWI +K+K++ F  +D  + Q+  I++ + +++   K  GY  + 
Sbjct: 844 RTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPET 903

Query: 674 SFELTD-----EESASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSL 728
            F L D     +E A  YHSEKLA+AFGLL+TP  +PI V+K+  +C DCHN +K I  +
Sbjct: 904 DFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKV 963

Query: 729 TAREIIVRDSKRLHKFVNGHCTCRDF 754
             REI++RD+ R H+F +G C+C D+
Sbjct: 964 YNREIVLRDANRFHRFKDGICSCGDY 989

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1

 Score =  436 bits (1122), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/684 (34%), Positives = 370/684 (54%), Gaps = 49/684 (7%)

Query: 108 DFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDML 167
           + F    L+  Y K G + E +  F+ LP  + V+W  LI GY  +     A+  +  M+
Sbjct: 71  NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130

Query: 168 E--AGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGS 225
              + N  T VTL T L   SS   + LGKQIH  V+K   E    VG+ L  +Y+  G 
Sbjct: 131 RDFSANL-TRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGC 189

Query: 226 LNSAIKAFN------------------------------RIREKNVMSWTTVIGACGENG 255
           ++ A K F                               R  EK+ +SW  +I    +NG
Sbjct: 190 ISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNG 249

Query: 256 EAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRN 315
            A + +  F +M  +G++ +++   S+   CG + ++  G Q+H+  I+  +  ++ V +
Sbjct: 250 LAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGS 309

Query: 316 SIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSI 375
           +++ +Y KC  +  A+ +FD M   N+V+W AM+ G+ Q                EA+ I
Sbjct: 310 ALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQT-----------GRAEEAVKI 358

Query: 376 FSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKK 435
           F  +  SG+ PD YT    ++ C+ + +LE+G Q H   + +G +  V V  +LV +Y K
Sbjct: 359 FLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGK 418

Query: 436 CGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGA 495
           CG I+ ++R+F EM+ R  +SWT+M++ +A    + + +QLF+ M+  G++P+ VT  G 
Sbjct: 419 CGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGV 478

Query: 496 LAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEP 555
           ++ACS AG+V +   YF++M  EY I P + HY C+ID+F R G +EEA  FI  M F P
Sbjct: 479 ISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPP 538

Query: 556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKN 615
           + + W+  ++ CR  GN+E+G +AAE L++L P     Y +L  I+ S G+W+ VA ++ 
Sbjct: 539 DAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRR 598

Query: 616 LTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESF 675
             RE+ + +    SWI+ K K++SF  +D   P   +I+  L+EL  K    GYK   SF
Sbjct: 599 GMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSF 658

Query: 676 ELTD-EESASV----YHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTA 730
              D EE+  V    YHSE+LAIAFGL+  P   PI V K+  +C DCHN  K I+S+T 
Sbjct: 659 VHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTG 718

Query: 731 REIIVRDSKRLHKFVNGHCTCRDF 754
           REI+VRD+ R H+F +G C+C DF
Sbjct: 719 REILVRDAVRFHRFKDGTCSCGDF 742

Arabidopsis thaliana (taxid: 3702)

>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2

 Score =  431 bits (1109), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/726 (32%), Positives = 404/726 (55%), Gaps = 38/726 (5%)

Query: 37  YQRSGSKLIQLNGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEII 96
           Y R+G+       +SE +R      +L +L+ G      ++ S+L+ C   +++ +   I
Sbjct: 127 YGRAGN-------SSEVIRCF----SLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKI 172

Query: 97  HAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQP 156
           H   +K G   D +V   L+++Y +   +  A+ +FD +P  ++ SW ++ISGY Q+   
Sbjct: 173 HCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNA 232

Query: 157 ELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSL 216
           + A+    + L A +  T V+L   L+AC+       G  IH+Y +K+  E +  V N L
Sbjct: 233 KEAL-TLSNGLRAMDSVTVVSL---LSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKL 288

Query: 217 CSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNE 276
             LY+  G L    K F+R+  ++++SW ++I A   N + ++ +  F +M    IQP+ 
Sbjct: 289 IDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDC 348

Query: 277 FTLTSISSVCGTMLSLRVGAQVHSLGIKLG-YASNLRVRNSIMYLYLKCGLVDEAQKLFD 335
            TL S++S+   +  +R    V    ++ G +  ++ + N+++ +Y K GLVD A+ +F+
Sbjct: 349 LTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFN 408

Query: 336 GMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNG-GTEALSIFSKLNSSG-MKPDLYTFSS 393
            + + ++++WN +I+G+AQ            NG  +EA+ +++ +   G +  +  T+ S
Sbjct: 409 WLPNTDVISWNTIISGYAQ------------NGFASEAIEMYNIMEEEGEIAANQGTWVS 456

Query: 394 ILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRT 453
           +L  CS+  AL QG ++H   LK G   DV V T+L +MY KCGR+E A  +F ++    
Sbjct: 457 VLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVN 516

Query: 454 LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFE 513
            + W ++I     H    +A+ LF++ML  GV+P+ +TFV  L+ACS++G+V E    FE
Sbjct: 517 SVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFE 576

Query: 514 MMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNM 573
           MMQ +Y I P + HY C++DM+ R G +E A  FIK M  +P+  IW   ++ CR HGN+
Sbjct: 577 MMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNV 636

Query: 574 ELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRI 633
           +LG  A+E L +++P+    + +L +++ SAG+WE V  ++++   + L +T  WS + +
Sbjct: 637 DLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEV 696

Query: 634 KDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTD-----EESASVYHS 688
            +KV  F   +  HP   E+++ L  L  K K  GY     F L D     +E   + HS
Sbjct: 697 DNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHS 756

Query: 689 EKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGH 748
           E+LAIAF L+ TP  + I + K+  +C DCH+  K I+ +T REIIVRDS R H F NG 
Sbjct: 757 ERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGV 816

Query: 749 CTCRDF 754
           C+C D+
Sbjct: 817 CSCGDY 822

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1

 Score =  431 bits (1108), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/707 (32%), Positives = 385/707 (54%), Gaps = 30/707 (4%)

Query: 59  FQEALSVLTE----GPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTF 114
             EA   L E    G  V + SY  L + C   +SLS+  ++H  +     +    +   
Sbjct: 64  LNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVLLQNC 123

Query: 115 LVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPT 174
           ++ +Y +C ++E+A K+FD +  +N VS T++IS Y +    + A+ +F  ML +G+ P 
Sbjct: 124 VLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPP 183

Query: 175 NVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFN 234
           +    T L +  +  ++  G+QIHA+V++     +TS+   + ++Y  CG L  A + F+
Sbjct: 184 SSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFD 243

Query: 235 RIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRV 294
           ++  K  ++ T ++    + G A   L+ F  +++EG++ + F  + +   C ++  L +
Sbjct: 244 QMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNL 303

Query: 295 GAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQ 354
           G Q+H+   KLG  S + V   ++  Y+KC   + A + F  +   N V+W+A+I+G+ Q
Sbjct: 304 GKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQ 363

Query: 355 MMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP-DLYTFSSILTICSRLVALEQGEQIHAL 413
           M               EA+  F  L S      + +T++SI   CS L     G Q+HA 
Sbjct: 364 MSQF-----------EEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHAD 412

Query: 414 TLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQA 473
            +K   +      +AL+ MY KCG ++ A+ VF  M    +++WT+ I+G A +  + +A
Sbjct: 413 AIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEA 472

Query: 474 LQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLID 533
           L+LFE M+  G++PN VTF+  L ACS+AG+V +     + M ++Y + P +DHY C+ID
Sbjct: 473 LRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMID 532

Query: 534 MFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES 593
           ++ R G ++EA  F+K M FEP+ + W  F++GC  H N+ELG  A E+L +L P+D   
Sbjct: 533 IYARSGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAG 592

Query: 594 YAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEI 653
           Y +  +++  AG+WE+ A +  L  E  L +    SWI+ K K++ F   D  HPQ+ EI
Sbjct: 593 YVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEI 652

Query: 654 FKVLDELVEKAKCFGYKQQESFE--LTDEESASVYHSEKLAIAFGLL----NTPIVSPIL 707
           ++ L E        G+ + + F+  +T+     + HSE+LAIAFGL+    N P  +PI 
Sbjct: 653 YEKLKEFD------GFMEGDMFQCNMTERREQLLDHSERLAIAFGLISVHGNAP--APIK 704

Query: 708 VVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDF 754
           V K+   C DCH F K ++ +T  EI++RDS+R H F  G C+C D+
Sbjct: 705 VFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDY 751

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	758
359492976	762	PREDICTED: pentatricopeptide repeat-cont	0.988	0.982	0.661	0.0
449523219	755	PREDICTED: pentatricopeptide repeat-cont	0.977	0.981	0.605	0.0
356498879	754	PREDICTED: pentatricopeptide repeat-cont	0.980	0.985	0.596	0.0
449461407	749	PREDICTED: pentatricopeptide repeat-cont	0.932	0.943	0.615	0.0
224115126	673	predicted protein [Populus trichocarpa]	0.869	0.979	0.651	0.0
356551789	758	PREDICTED: pentatricopeptide repeat-cont	0.895	0.895	0.626	0.0
357490167	765	Pentatricopeptide repeat-containing prot	0.985	0.976	0.583	0.0
255572826	687	pentatricopeptide repeat-containing prot	0.894	0.986	0.623	0.0
125534384	770	hypothetical protein OsI_36110 [Oryza sa	0.932	0.918	0.556	0.0
302142104	683	unnamed protein product [Vitis vinifera]	0.883	0.980	0.581	0.0

>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Vitis vinifera]

 Score = 1021 bits (2640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/765 (66%), Positives = 612/765 (80%), Gaps = 16/765 (2%)

Query: 1   MASVPWAAAAACTL-ETKSRQPSSSLATLKDKNHTVSYQRSGSKLIQLNGNSEPVRSLGF 59
           MAS+P  A       E++ R+ S+S     +K+ +VSYQRS     QL+G SE  R L F
Sbjct: 1   MASLPSVAVTRTPKSESEFRKYSASFLP-SEKSPSVSYQRS----TQLDGVSE-ARCLDF 54

Query: 60  QEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVY 119
           +EALS + EG KV+++ YV +LQEC+++K +S+A+ IHAHIVKTG+H+D F+MTFLVNVY
Sbjct: 55  REALSFIREGTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVY 114

Query: 120 GKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLG 179
            KCG ME A+KVFD LPR NVVSWT+L++GYV +S+PELA+ VF +MLEAG YPTN TLG
Sbjct: 115 AKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLG 174

Query: 180 TALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREK 239
           TAL+A S L S  LGKQIH Y +KY+ E D S+GNSLCSLYS CGSL  A+KAF RIR+K
Sbjct: 175 TALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDK 234

Query: 240 NVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVH 299
           NV+SWTTVI A G+NGEA  GL+FF +MLSE ++PNEFTLTS  S+C  M SL +G Q+H
Sbjct: 235 NVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIH 294

Query: 300 SLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLA 359
           SL IKLG+ SNL ++NSIMYLYLKCG + EA+KLFD M  ++LVTWNAMIAGHA+MMD A
Sbjct: 295 SLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFA 354

Query: 360 KDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGF 419
           KDDL+AH  GTEALSIF KLN SGMKPDL+TFSS+L++CS LVALEQGEQ+HA T+KTGF
Sbjct: 355 KDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGF 414

Query: 420 LSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFED 479
           LSDVVVGTALVNMY KCG IERAS+ FVEMS RTLISWTSMITG+A +    QAL LFED
Sbjct: 415 LSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQNGQPQQALLLFED 474

Query: 480 MLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG 539
           M LAGVRPN++TFVG L+ACS+AGMV EAL YF+MM+ EYKI PVMDHY CLIDMFVRLG
Sbjct: 475 MRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDHYACLIDMFVRLG 534

Query: 540 CIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLD 599
            ++EAFDFIK+MD EPNE IWS+ IAGCR  G +ELGFYAAEQLL LKPKD E+Y +LL+
Sbjct: 535 RLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNLKPKDTETYNLLLN 594

Query: 600 IFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDE 659
           +++SAG+W++V+ V+ + +EEKL    DWSWI IKDK+YSFK N   H QS E++++L  
Sbjct: 595 MYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWISIKDKIYSFKRNARSHAQSGEMYELLGN 654

Query: 660 LVEKAKCFGYKQQESFELTDEE---------SASVYHSEKLAIAFGLLNTPIVSPILVVK 710
           L EKAK FGY+ +ES E+TDEE         ++ VYHSEKLAIAFGLLNT    PI V K
Sbjct: 655 LHEKAKSFGYEWEESLEVTDEEEDADEEKALTSIVYHSEKLAIAFGLLNTSNAVPIRVTK 714

Query: 711 STTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDFG 755
           S +MCRDCHNFI+II+ L+AREII+RDSKRLHKF+NGHC+C DFG
Sbjct: 715 SISMCRDCHNFIRIISLLSAREIIIRDSKRLHKFINGHCSCGDFG 759

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Cucumis sativus]

 Score =  966 bits (2498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/766 (60%), Positives = 589/766 (76%), Gaps = 25/766 (3%)

Query: 1   MASVPWAA-AAACTLETKSRQPSSSLA-TLKDKNHTVSYQRSGSKLIQLN--GNSEPVRS 56
           MASVP  +  AA  LET  R+  S+ +  L DK+ +V +Q++ S LIQLN     EP   
Sbjct: 1   MASVPSVSLTAALKLETHPRKRHSTASFPLNDKDKSVGFQKNHS-LIQLNVVDAEEP--- 56

Query: 57  LGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLV 116
                       G ++++S Y  LLQEC++R   + A +IH HIVKTG H+D FVMTFLV
Sbjct: 57  ----------KLGTRIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLV 106

Query: 117 NVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNV 176
           NVY KCG ME A KVFDNLPR NV +WT+L++GYVQNS P LA+ +F+ MLEAG YP+N 
Sbjct: 107 NVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNY 166

Query: 177 TLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRI 236
           TLG  L ACSSL+SI  GKQ+HAY++KY  + DTS+GNSL S YS    L  AIKAF  I
Sbjct: 167 TLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKII 226

Query: 237 REKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGA 296
           +EK+V+SWT+VI +C +NG+A + L FF  MLS+G++PNE+TLTS+ S C  ML+L +GA
Sbjct: 227 KEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGA 286

Query: 297 QVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMM 356
           Q+HSL IKLGY S++ ++NSIMYLYLKCG + EAQKLF+GM  +NLVTWNAMIAGHA+MM
Sbjct: 287 QIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMM 346

Query: 357 DLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLK 416
           DLA+DD++AH  G+ AL++F KL  SGMKPDL+TFSS+L++CS LVALEQGEQIH   +K
Sbjct: 347 DLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIK 406

Query: 417 TGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQL 476
           +G L+DVVVGTALV+MY KCG I++AS+ F+EM +RT+ISWTSMITGFA H LS QALQL
Sbjct: 407 SGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQL 466

Query: 477 FEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFV 536
           FEDM L G++PNQVTFVG L+ACS+AG+  EAL YFE+MQK+Y IKPVMDH+ CLIDM++
Sbjct: 467 FEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYL 526

Query: 537 RLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM 596
           RLG +EEAFD + KM+FEPNE IWS+ IAGCR HG  +LGFYAAEQLLKLKPKD E+Y  
Sbjct: 527 RLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVS 586

Query: 597 LLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKV 656
           LL++ +SAGRW+DV+ V+ L +EEK+ +  DWSWI IK+KVYSFKPND  H QS E++K+
Sbjct: 587 LLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMYKL 646

Query: 657 LDELVEKAKCFGYKQQESFELTDEE-------SASVYHSEKLAIAFGLLNTPIVSPILVV 709
           L+ ++ + K  GY+  E  E+ ++E       S++V HSEKLAIAFGLLN P  +PI VV
Sbjct: 647 LETVLNEVKALGYEPIEDVEVIEKEENEERVLSSTVLHSEKLAIAFGLLNLPTATPIRVV 706

Query: 710 KSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDFG 755
           KS TMCRDCHNFI+ I+ L  REI++RDSK+LHKF+NG+C+C  +G
Sbjct: 707 KSITMCRDCHNFIRFISLLKGREIVIRDSKQLHKFLNGYCSCGGYG 752

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Glycine max]

 Score =  948 bits (2451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/763 (59%), Positives = 586/763 (76%), Gaps = 20/763 (2%)

Query: 1   MASVPWAAAAACTLETKSRQPSSSLATLK-DKNHTVSYQRSGSKLIQLNGNSEPVRSLGF 59
           MAS  +++A   TL+   + P  S ++   +K  ++S+Q+S                L F
Sbjct: 1   MASF-FSSAVTATLKLHPQFPKYSPSSYPPEKGQSISFQKS-----------HRFTHLDF 48

Query: 60  QEALSVLTEGPKVQTS-SYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNV 118
            EAL +  EG + +    YV LLQ+C++++S S  +I+H H++KTG H +FFVM+FLVNV
Sbjct: 49  GEALLLNKEGTEEEEKLFYVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNV 108

Query: 119 YGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTL 178
           Y KCGNME+A++VF+N+PR NVV+WT+L+ G+VQNSQP+ AIHVF +ML AG+YP+  TL
Sbjct: 109 YAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTL 168

Query: 179 GTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE 238
              L ACSSL+S++LG Q HAY++KY  + DTSVG++LCSLYS CG L  A+KAF+RIRE
Sbjct: 169 SAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIRE 228

Query: 239 KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQV 298
           KNV+SWT+ + ACG+NG  V+GLR F +M+SE I+PNEFTLTS  S C  + SL +G QV
Sbjct: 229 KNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQV 288

Query: 299 HSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDL 358
            SL IK GY SNLRVRNS++YLYLK G + EA + F+ M  V++VTWNAMIAGHAQMM+L
Sbjct: 289 CSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMEL 348

Query: 359 AKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTG 418
            KD+LSA   G+EAL IFSKLN SGMKPDL+T SS+L++CSR++A+EQGEQIHA T+KTG
Sbjct: 349 TKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTG 408

Query: 419 FLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFE 478
           FLSDV+V T+L++MY KCG IERAS+ F+EMSTRT+I+WTSMITGF+ H +S QAL +FE
Sbjct: 409 FLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFE 468

Query: 479 DMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRL 538
           DM LAGVRPN VTFVG L+ACS+AGMV +AL YFE+MQK+YKIKPVMDHY C++DMFVRL
Sbjct: 469 DMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYECMVDMFVRL 528

Query: 539 GCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLL 598
           G +E+A +FIKKM++EP+E IWS FIAGCR HGN+ELGFYA+EQLL LKPKD E+Y +LL
Sbjct: 529 GRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGNLELGFYASEQLLSLKPKDPETYVLLL 588

Query: 599 DIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLD 658
           ++++SA R++DV+ V+ +   EK+ +  DWSWI IKDKVYSFK ND  HP S+ I K L+
Sbjct: 589 NMYLSADRFDDVSRVRKMMEVEKVGKLKDWSWISIKDKVYSFKTNDKTHPPSSLICKSLE 648

Query: 659 ELVEKAKCFGYKQ------QESFELTDEESASVYHSEKLAIAFGLLNTPIVSPILVVKST 712
           +L+ KAK  GY+        +  E     S ++YHSEKLAI FGL N P  SPI VVKST
Sbjct: 649 DLLAKAKNLGYEMLESVEISDEEEEEKTSSPTIYHSEKLAITFGLENLPNSSPIRVVKST 708

Query: 713 TMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDFG 755
            +CRD HNFIK +++LT REIIV+DSKRLHKFVNG C+C +FG
Sbjct: 709 LICRDSHNFIKCVSTLTGREIIVKDSKRLHKFVNGECSCGNFG 751

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Cucumis sativus]

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/730 (61%), Positives = 568/730 (77%), Gaps = 23/730 (3%)

Query: 35  VSYQRSGSKLIQLN--GNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSN 92
           V +Q++ S LIQLN     EP               G ++++S Y  LLQEC++R   + 
Sbjct: 31  VGFQKNHS-LIQLNVVDAEEP-------------KLGTRIESSYYFPLLQECIDRNLATE 76

Query: 93  AEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQ 152
           A +IH HIVKTG H+D FVMTFLVNVY KCG ME A KVFDNLPR NV +WT+L++GYVQ
Sbjct: 77  ARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQ 136

Query: 153 NSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSV 212
           NS P LA+ +F+ MLEAG YP+N TLG  L ACSSL+SI  GKQ+HAY++KY  + DTS+
Sbjct: 137 NSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSI 196

Query: 213 GNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGI 272
           GNSL S YS    L  AIKAF  I+EK+V+SWT+VI +C +NG+A + L FF  MLS+G+
Sbjct: 197 GNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGM 256

Query: 273 QPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQK 332
           +PNE+TLTS+ S C  ML+L +GAQ+HSL IKLGY S++ ++NSIMYLYLKCG + EAQK
Sbjct: 257 KPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQK 316

Query: 333 LFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFS 392
           LF+GM  +NLVTWNAMIAGHA+MMDLA+DD++AH  G+ AL++F KL  SGMKPDL+TFS
Sbjct: 317 LFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFS 376

Query: 393 SILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR 452
           S+L++CS LVALEQGEQIH   +K+G L+DVVVGTALV+MY KCG I++AS+ F+EM +R
Sbjct: 377 SVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSR 436

Query: 453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYF 512
           T+ISWTSMITGFA H LS QALQLFEDM L G++PNQVTFVG L+ACS+AG+  EAL YF
Sbjct: 437 TMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYF 496

Query: 513 EMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGN 572
           E+MQK+Y IKPVMDH+ CLIDM++RLG +EEAFD + KM+FEPNE IWS+ IAGCR HG 
Sbjct: 497 ELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGK 556

Query: 573 MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIR 632
            +LGFYAAEQLLKLKPKD E+Y  LL++ +SAGRW+DV+ V+ L +EEK+ +  DWSWI 
Sbjct: 557 SDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWIS 616

Query: 633 IKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEE-------SASV 685
           IK+KVYSFKPND  H QS E++K+L+ ++ + K  GY+  E  E+ ++E       S++V
Sbjct: 617 IKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKALGYEPIEDVEVIEKEENEERVLSSTV 676

Query: 686 YHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFV 745
            HSEKLAIAFGLLN P  +PI VVKS TMCRDCHNFI+ I+ L  REI++RDSK+LHKF+
Sbjct: 677 LHSEKLAIAFGLLNLPTATPIRVVKSITMCRDCHNFIRFISLLKGREIVIRDSKQLHKFL 736

Query: 746 NGHCTCRDFG 755
           NG+C+C  +G
Sbjct: 737 NGYCSCGGYG 746

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa] gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]

 Score =  941 bits (2433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/668 (65%), Positives = 544/668 (81%), Gaps = 9/668 (1%)

Query: 95  IIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNS 154
           ++HAH++KTG+H++FFVM+FLVNVY KCG M  A+KVFDNLPR NVV WT+L++GYVQNS
Sbjct: 1   MVHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNS 60

Query: 155 QPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGN 214
           QPE+A+ VF DMLE+G++P+N TL  AL ACSSLESI LGKQ HA+++KY+   D+S+GN
Sbjct: 61  QPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGN 120

Query: 215 SLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQP 274
           +LCSLYS  GSL+S++KAF    EK+V+SWTT+I ACG+NG A  GLR F +ML E ++P
Sbjct: 121 ALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEP 180

Query: 275 NEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLF 334
           N+FTLTS+ S+C T+ S  +G QVHSL  KLG+ SNLR+ NS++YLYLKCG +DEA+ LF
Sbjct: 181 NDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLF 240

Query: 335 DGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSI 394
           + M + NL+TWNAMIAGHAQ MDLAKD+ SA   GTEAL ++ KLN SG KPDL+T SSI
Sbjct: 241 NRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSI 300

Query: 395 LTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTL 454
           LT+CSRL ALEQGEQIHA T+K+GFLSDVVVGTALV+MY KCG IERA + F++MSTRTL
Sbjct: 301 LTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTL 360

Query: 455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEM 514
           ISWTSMIT FA H  S  ALQLFEDM LAG RPNQ+TFVG LAACS+AGMV EAL YFE+
Sbjct: 361 ISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEI 420

Query: 515 MQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNME 574
           MQKEYKIKPVMDHY CL+DMFVRLG ++EAFD IK+MD EPNE IW + IAGCR HGN E
Sbjct: 421 MQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEE 480

Query: 575 LGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIK 634
           LGFYAAEQLLKLKP+  E+Y +LL++++SA RWEDV++V+ L +EEK+ +  DWS I IK
Sbjct: 481 LGFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWSRISIK 540

Query: 635 DKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEE---------SASV 685
            +V+SFK N+ LH  +AE+  +L++LV++AK  GY+Q E+ E+ D+E         S++V
Sbjct: 541 GEVHSFKTNNRLHNHNAELHTLLNDLVDRAKSLGYEQLENMEVIDDEEEEAEEKAFSSAV 600

Query: 686 YHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFV 745
           YHSEKLA+ FGLLNTPI +PI V+KS TMC+DCH+F+K+++S T R II++D KRLHKFV
Sbjct: 601 YHSEKLAVTFGLLNTPIGAPIRVIKSVTMCKDCHDFMKVVSSQTTRHIIIKDGKRLHKFV 660

Query: 746 NGHCTCRD 753
           NG C+C D
Sbjct: 661 NGQCSCAD 668

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Glycine max]

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/686 (62%), Positives = 546/686 (79%), Gaps = 7/686 (1%)

Query: 77  YVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLP 136
           YV LLQ+C++ +S S  +I+H H++KTG H +FFVM+FLVNVY KCGNME+A++VFDN+ 
Sbjct: 70  YVPLLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNML 129

Query: 137 RINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQ 196
           R NVV+WT+L+ G+VQNSQP+ AIHVF +ML AG+YP+  TL   L ACSSL+S++LG Q
Sbjct: 130 RRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQ 189

Query: 197 IHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGE 256
            HAY++KY  + D SVG++LCSLYS CG L  A+K F+RIREKNV+SWT+ + AC +NG 
Sbjct: 190 FHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGA 249

Query: 257 AVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNS 316
            V+GLR F +M++  I+PNEFTLTS  S C  +LSL +G QV+SL IK GY SNLRVRNS
Sbjct: 250 PVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNS 309

Query: 317 IMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIF 376
           ++YLYLK G + EA +LF+ M   ++VTWNAMIAGHAQMM+L KD+LSA + G+EAL +F
Sbjct: 310 LLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLF 369

Query: 377 SKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKC 436
           SKLN SGMKPDL+T SS+L++CSR++A+EQGEQIHA T+KTGFLSDV+V T+L++MY KC
Sbjct: 370 SKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKC 429

Query: 437 GRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGAL 496
           G IERAS+ F+EMSTRT+I+WTSMITGF+ H +S QAL +FEDM LAGVRPN VTFVG L
Sbjct: 430 GSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVL 489

Query: 497 AACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPN 556
           +ACS+AGMV +AL YFE+MQK+YKIKP MDHY C++DMFVRLG +E+A +FIKKM++EP+
Sbjct: 490 SACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKMNYEPS 549

Query: 557 EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNL 616
           E IWS FIAGC+ HGN+ELGFYAAEQLL LKPKD E+Y +LL++++SA R+EDV+ V+ +
Sbjct: 550 EFIWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDPETYVLLLNMYLSAERFEDVSRVRKM 609

Query: 617 TREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQ----- 671
             EEK+ +  DWSWI IKDKVYSFK N   HPQS+ I K L++L+ K K  GY+      
Sbjct: 610 MEEEKVGKLKDWSWISIKDKVYSFKTNGKTHPQSSLICKSLEDLLAKVKNVGYEMLESVE 669

Query: 672 --QESFELTDEESASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLT 729
              E  E     S ++YHSEKLAI FGL N P  SPI VVKST +CRD HNFIK +++L 
Sbjct: 670 ISDEEEEEEKTSSPNIYHSEKLAITFGLENLPNSSPIRVVKSTLICRDSHNFIKYVSTLA 729

Query: 730 AREIIVRDSKRLHKFVNGHCTCRDFG 755
            REIIV+DSKRLHKF NG C+C +FG
Sbjct: 730 GREIIVKDSKRLHKFANGECSCGNFG 755

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490167|ref|XP_003615371.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355516706|gb|AES98329.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/770 (58%), Positives = 577/770 (74%), Gaps = 23/770 (2%)

Query: 1   MASVPWAAAAACTLETK-----SRQPSSSLATLKDKNHTVSYQRSGSKLIQLNGNSEPVR 55
           M S+P       T   K      + P +S     DK  ++S Q++      ++ + +P R
Sbjct: 1   MVSLPSVVVVGVTATLKLHPQFRKYPPTSFPI--DKGQSISLQKT-----HISTHLDPNR 53

Query: 56  SLGFQEALSVLTE-GPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTF 114
           +L FQEA S+  E   +V +S Y  LLQ+C+   S S+ +IIH HIVKTGSH+D F+ +F
Sbjct: 54  NLKFQEAFSLAKESNEEVDSSFYPPLLQQCLENCSFSSTQIIHCHIVKTGSHEDPFLSSF 113

Query: 115 LVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDML-EAGNYP 173
           LV VY KCG ME AQ+VFD++ R N V+WT+L+ GYVQNS P+ AIH+F +ML  +  YP
Sbjct: 114 LVTVYAKCGRMECAQQVFDHMNRRNAVAWTNLMKGYVQNSMPKHAIHLFEEMLLHSECYP 173

Query: 174 TNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCG-SLNSAIKA 232
           +N TL  AL AC+SL S++LG+Q+HAY++KY  + DTS+GN+LCSLY+ CG  L   + A
Sbjct: 174 SNYTLAIALNACTSLHSLKLGEQLHAYIIKYHVDFDTSIGNALCSLYTKCGGKLEVGLTA 233

Query: 233 FNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSE--GIQPNEFTLTSISSVCGTML 290
           F RI+EK+V+SWT  I ACGE GEA++G+R F +ML +   +QPNE+TLTS  S C  + 
Sbjct: 234 FRRIKEKDVISWTAAISACGEKGEAMKGVRVFVEMLLDEVQVQPNEYTLTSALSQCCEVK 293

Query: 291 SLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIA 350
            L +G QVH+L  KLGY SNLRVRNS++YLYLKCG + EAQ+LF GM+ VNLVTWNAMIA
Sbjct: 294 CLELGIQVHALCTKLGYESNLRVRNSLLYLYLKCGCIVEAQRLFKGMNDVNLVTWNAMIA 353

Query: 351 GHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQI 410
           GHAQMM+L+KD+LSA+  G EAL++FSKLN SGMKPD +TFSS+L++CS+++ALEQGEQI
Sbjct: 354 GHAQMMELSKDNLSAYQKGIEALNLFSKLNRSGMKPDPFTFSSVLSVCSKMMALEQGEQI 413

Query: 411 HALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLS 470
           HA T+KTGFLSDVVVG++++NMY KCG IERAS+VF+EMS RT+I WT+MITGFA H  S
Sbjct: 414 HARTIKTGFLSDVVVGSSMINMYNKCGSIERASKVFLEMSIRTMILWTTMITGFAQHGWS 473

Query: 471 HQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMC 530
            QAL LFEDM L G+RPN VTFVG L+AC +AGMV EA  YFE+MQKEYKIKPVMDHY+C
Sbjct: 474 KQALNLFEDMKLVGIRPNLVTFVGVLSACGSAGMVNEAFNYFEIMQKEYKIKPVMDHYVC 533

Query: 531 LIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD 590
           L+DM VRLG ++EAFD IKKMD++ +E IWS  I GC   GN+ELG  AAE+LL LKPKD
Sbjct: 534 LVDMLVRLGQVQEAFDLIKKMDYKASEFIWSNLIVGCLSQGNLELGCDAAEKLLSLKPKD 593

Query: 591 CESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQS 650
            E+Y +LL+ +VSAGR++DV+ V+N+ REEK+ E  DWSWI IKD+VYSF+ ND    +S
Sbjct: 594 TETYKLLLNAYVSAGRYDDVSRVENIMREEKIGELKDWSWISIKDRVYSFQTNDKADIES 653

Query: 651 AEIFKVLDELVEKAKCFGYKQQESFELTDEE-----SASVYHSEKLAIAFGLLNTPIVSP 705
           + I K L++L  KAK  GY+  E  E +D+E     S ++YHSEKLAI FGL N P  SP
Sbjct: 654 S-IGKSLEDLHIKAKNLGYEMLEYVEKSDKEKEKTSSPTIYHSEKLAITFGLENLPNSSP 712

Query: 706 ILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDFG 755
           + VVK+T MCRD HNF+K I++LT+REIIV+DSKRLHKFVNG C+C + G
Sbjct: 713 VRVVKNTLMCRDSHNFVKYISTLTSREIIVKDSKRLHKFVNGQCSCGNIG 762

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572826|ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223533264|gb|EEF35017.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  885 bits (2288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/680 (62%), Positives = 531/680 (78%), Gaps = 2/680 (0%)

Query: 1   MASVPWAA-AAACTLETKSRQPSSSLATLKDKNHTVSYQRSGSKLIQLNGNSEPVRSLGF 59
           MAS+P  + ++   LE + R+  SS +   +K+ + SYQRS S   QL+G+ EP++ L F
Sbjct: 1   MASLPSVSLSSTLKLEPELRKHPSSSSLPTEKSPSTSYQRS-SINTQLDGSLEPIKPLEF 59

Query: 60  QEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVY 119
            EAL  + E  K++ S Y+ LLQEC  + S+S A++IHAHI+KTG+H+D  VMT LVNVY
Sbjct: 60  HEALCFIKEEKKIEPSYYLPLLQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVY 119

Query: 120 GKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLG 179
            KCG M  A+K+FD+L R NVV+WT+L++GYVQNSQP +AI VF DMLE+G  P+N TLG
Sbjct: 120 AKCGAMGNARKIFDSLHRRNVVAWTALMTGYVQNSQPNIAIDVFQDMLESGTLPSNYTLG 179

Query: 180 TALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREK 239
            AL ACS++ SI+LGKQ+HA+V+KY+ + D S+GN+LCSLYS  GSL+S+I  F  I EK
Sbjct: 180 IALNACSAINSIKLGKQLHAFVIKYKLDYDPSIGNALCSLYSKLGSLDSSINVFQSIGEK 239

Query: 240 NVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVH 299
           NV+SWT VI ACGENG+A  GLRFF++ML E I+PNEFTLT++ S+C   L+L +G  VH
Sbjct: 240 NVISWTAVISACGENGKAAMGLRFFNEMLLEDIKPNEFTLTTVLSLCCVTLALVLGRLVH 299

Query: 300 SLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLA 359
           SL IKLGY  NLR+ NSIMYLYLKCG +DEAQ LF  M   NLVTWNAMI+GHAQ MDLA
Sbjct: 300 SLSIKLGYQYNLRITNSIMYLYLKCGHMDEAQILFHKMGSTNLVTWNAMISGHAQAMDLA 359

Query: 360 KDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGF 419
           KDD SA   G EALSIF +LN +G KPDL+T SS+LT+CSRL AL QGEQ+HA T+K+G+
Sbjct: 360 KDDFSAQRSGIEALSIFLELNRTGKKPDLFTLSSVLTVCSRLSALGQGEQLHAQTIKSGY 419

Query: 420 LSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFED 479
           LSDVVVGTALVNMY KCG I +AS+ FVEMSTRTLISWT+MITG A H  S QALQLFED
Sbjct: 420 LSDVVVGTALVNMYSKCGSIGKASKAFVEMSTRTLISWTTMITGLAQHGHSEQALQLFED 479

Query: 480 MLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG 539
           M LAGVRPNQ+TFVG LAAC ++GMV EALGYFEMMQKEY+IKPVMDHY CLI MFV+L 
Sbjct: 480 MRLAGVRPNQITFVGVLAACCHSGMVDEALGYFEMMQKEYRIKPVMDHYGCLIAMFVKLR 539

Query: 540 CIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLD 599
            ++EAFD I KMDFEP+E IWS+ IAGCR  G  ELGFYAAEQLLKLK KD E+Y  LL+
Sbjct: 540 RLDEAFDIINKMDFEPSEFIWSILIAGCRNLGKQELGFYAAEQLLKLKLKDTETYVTLLN 599

Query: 600 IFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDE 659
           +++SA RW+DV+ V+ L +EEKL + +DWSWI IK+K++SFK    LHP +A+++++L+E
Sbjct: 600 MYISAKRWQDVSRVRKLMKEEKLGKFNDWSWITIKEKIHSFKTTGRLHPHNAKMYELLEE 659

Query: 660 LVEKAKCFGYKQQESFELTD 679
           L++KAK  GY+  +  E+ D
Sbjct: 660 LLDKAKGSGYQSTQHMEILD 679

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]

 Score =  852 bits (2201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/715 (55%), Positives = 529/715 (73%), Gaps = 8/715 (1%)

Query: 49  GNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQD 108
           G   P+R+L  QEA+++LTEG  VQ++ YV LL  CV   SL  A  +H H+ KTG+  D
Sbjct: 53  GMEAPLRTLDVQEAMTMLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGAD 112

Query: 109 FFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLE 168
            FV T LVN Y +CG   +A+++FD +P  NVV+WT+L++GY  NSQP L + VF++MLE
Sbjct: 113 MFVATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLE 172

Query: 169 AGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNS 228
            G YP++ TLG  L AC +   + LGKQ+H Y +KY  E  TS+GNSLCSLY+  GSL+S
Sbjct: 173 MGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDS 232

Query: 229 AIKAFNRIREKNVMSWTTVIGACGENGEAVQ-GLRFFSKMLSEGIQPNEFTLTSISSVCG 287
           A++AF RI EKNV++WTT+I AC E+ E V+ GL  F  ML +G+ PNEFTLTS+ S+CG
Sbjct: 233 ALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCG 292

Query: 288 TMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNA 347
           T L L +G QV +   K+G  +NL V+NS MYLYL+ G  DEA +LF+ M   +++TWNA
Sbjct: 293 TRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNA 352

Query: 348 MIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQG 407
           MI+G+AQ+MD AKDDL A + G +AL+IF  L  S MKPDL+TFSSIL++CS ++ALEQG
Sbjct: 353 MISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQG 412

Query: 408 EQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANH 467
           EQIHA T+K+GFLSDVVV +ALVNMY KCG I+ A++ F+EM TRT ++WTSMI+G++ H
Sbjct: 413 EQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQH 472

Query: 468 SLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDH 527
               +A+QLFE+M LAGVRPN++TFV  L+ACS AG+V EA  YF+MM+KEY I+PV+DH
Sbjct: 473 GQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDH 532

Query: 528 YMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK 587
           Y C+IDMFVRLG +E+AF FIK+  FEPNE IWS  +AGCR HGNMEL FYAA++LL+LK
Sbjct: 533 YGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELK 592

Query: 588 PKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLH 647
           PK  E+Y +LL++++S  RW+DVA V+ L ++E +    D SWI IKDKVY F+ ND  H
Sbjct: 593 PKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTH 652

Query: 648 PQSAEIFKVLDELVEKAKCFGYKQQESFELTDEES-------ASVYHSEKLAIAFGLLNT 700
           PQ+ E++++L+ L+EKAK  GY+  ++ EL+D E        +  +HSE+LA+A GLL T
Sbjct: 653 PQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQT 712

Query: 701 PIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDFG 755
           P  + + V K+ TMCRDCH+ IK+ + L  REIIVRDSKRLHKF +G C+C DFG
Sbjct: 713 PPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDFG 767

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142104|emb|CBI19307.3| unnamed protein product [Vitis vinifera]

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/765 (58%), Positives = 542/765 (70%), Gaps = 95/765 (12%)

Query: 1   MASVPWAAAAACTL-ETKSRQPSSSLATLKDKNHTVSYQRSGSKLIQLNGNSEPVRSLGF 59
           MAS+P  A       E++ R+ S+S     +K+ +VSYQRS     QL+G SE  R L F
Sbjct: 1   MASLPSVAVTRTPKSESEFRKYSASFLP-SEKSPSVSYQRS----TQLDGVSE-ARCLDF 54

Query: 60  QEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVY 119
           +EALS + EG KV+++ YV +LQEC+++K                               
Sbjct: 55  REALSFIREGTKVESAFYVPILQECIDKKL------------------------------ 84

Query: 120 GKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLG 179
                   A+KVFD LPR NVVSWT+L++GYV +S+PELA+ VF +MLEAG YPTN TLG
Sbjct: 85  -------TARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLG 137

Query: 180 TALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREK 239
           TAL+A S L S  LGKQIH Y +KY+ E D S+GNSLCSLYS CGSL  A+KAF RIR+K
Sbjct: 138 TALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDK 197

Query: 240 NVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVH 299
           NV+SWTTVI A G+NGEA  GL+FF +MLSE ++PNEFTLTS  S+C  M SL +G Q+H
Sbjct: 198 NVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIH 257

Query: 300 SLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLA 359
           SL IKLG+ SNL ++NSIMYLYLKCG + EA+KLFD M  ++LVTWNAMIAGHA+MMD A
Sbjct: 258 SLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFA 317

Query: 360 KDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGF 419
           KDDL+AH  GTEALSIF KLN SGMKPDL+TFSS+L++CS LVALEQGEQ+HA T+KTGF
Sbjct: 318 KDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGF 377

Query: 420 LSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFED 479
           LSDVV G                                             QAL LFED
Sbjct: 378 LSDVVNGQP------------------------------------------QQALLLFED 395

Query: 480 MLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG 539
           M LAGVRPN++TFVG L+ACS+AGMV EAL YF+MM+ EYKI PVMDHY CLIDMFVRLG
Sbjct: 396 MRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDHYACLIDMFVRLG 455

Query: 540 CIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLD 599
            ++EAFDFIK+MD EPNE IWS+ IAGCR  G +ELGFYAAEQLL LKPKD E+Y +LL+
Sbjct: 456 RLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNLKPKDTETYNLLLN 515

Query: 600 IFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDE 659
           +++SAG+W++V+ V+ + +EEKL    DWSWI IKDK+YSFK N   H QS E++++L  
Sbjct: 516 MYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWISIKDKIYSFKRNARSHAQSGEMYELLGN 575

Query: 660 LVEKAKCFGYKQQESFELTDEE---------SASVYHSEKLAIAFGLLNTPIVSPILVVK 710
           L EKAK FGY+ +ES E+TDEE         ++ VYHSEKLAIAFGLLNT    PI V K
Sbjct: 576 LHEKAKSFGYEWEESLEVTDEEEDADEEKALTSIVYHSEKLAIAFGLLNTSNAVPIRVTK 635

Query: 711 STTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDFG 755
           S +MCRDCHNFI+II+ L+AREII+RDSKRLHKF+NGHC+C DFG
Sbjct: 636 SISMCRDCHNFIRIISLLSAREIIIRDSKRLHKFINGHCSCGDFG 680

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	758
TAIR|locus:2082886	850	EMB2261 "embryo defective 2261	0.877	0.782	0.355	3e-124
TAIR|locus:2205425	743	AT1G68930 "AT1G68930" [Arabido	0.713	0.728	0.364	2.5e-119
TAIR|locus:2202074	809	CRR22 "CHLORORESPIRATORY REDUC	0.885	0.829	0.362	9.8e-119
TAIR|locus:2038603	868	AT2G27610 "AT2G27610" [Arabido	0.845	0.738	0.365	6.2e-117
TAIR|locus:2205200	741	OTP82 "AT1G08070" [Arabidopsis	0.691	0.707	0.365	6.1e-114
TAIR|locus:2119440	1064	AT4G13650 [Arabidopsis thalian	0.890	0.634	0.329	3.2e-113
TAIR|locus:2125899	990	AT4G33170 [Arabidopsis thalian	0.878	0.672	0.336	5.2e-113
TAIR|locus:2196583	866	ECB2 "EARLY CHLOROPLAST BIOGEN	0.885	0.774	0.333	2.2e-112
TAIR|locus:2178188	995	MEF7 "AT5G09950" [Arabidopsis	0.885	0.674	0.355	4.2e-111
TAIR|locus:2032840	937	AT1G16480 "AT1G16480" [Arabido	0.852	0.689	0.332	8.7e-111

TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)]

 Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
 Identities = 247/694 (35%), Positives = 404/694 (58%)

Query:    77 YVSLLQECVNRKSLSNAEIIHAHIVKTGSHQ-DFFVMTFLVNVYGKCGN-MEEAQKVFDN 134
             Y ++++ C N   +    +    ++KTG  + D  V   L++++ K  N  E A KVFD 
Sbjct:   169 YTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDK 228

Query:   135 LPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLG 194
             +  +NVV+WT +I+  +Q   P  AI  FLDM+ +G      TL +  +AC+ LE++ LG
Sbjct:   229 MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG 288

Query:   195 KQIHAYVVKYQTEDDTSVGNSLCSLYSTC---GSLNSAIKAFNRIREKNVMSWTTVIGAC 251
             KQ+H++ ++    DD     SL  +Y+ C   GS++   K F+R+ + +VMSWT +I   
Sbjct:   289 KQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGY 346

Query:   252 GENGE-AVQGLRFFSKMLSEG-IQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYAS 309
              +N   A + +  FS+M+++G ++PN FT +S    CG +   RVG QV     K G AS
Sbjct:   347 MKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLAS 406

Query:   310 NLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGG 369
             N  V NS++ +++K   +++AQ+ F+ +S  NLV++N  + G  + ++            
Sbjct:   407 NSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFE---------- 456

Query:   370 TEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTAL 429
              +A  + S++    +    +TF+S+L+  + + ++ +GEQIH+  +K G   +  V  AL
Sbjct:   457 -QAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNAL 515

Query:   430 VNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ 489
             ++MY KCG I+ ASRVF  M  R +ISWTSMITGFA H  + + L+ F  M+  GV+PN+
Sbjct:   516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNE 575

Query:   490 VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIK 549
             VT+V  L+ACS+ G+V E   +F  M +++KIKP M+HY C++D+  R G + +AF+FI 
Sbjct:   576 VTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFIN 635

Query:   550 KMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWED 609
              M F+ + ++W  F+  CR H N ELG  AA ++L+L P +  +Y  L +I+  AG+WE+
Sbjct:   636 TMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEE 695

Query:   610 VAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGY 669
                ++   +E  L +    SWI + DK++ F   D  HP + +I+  LD L+ + K  GY
Sbjct:   696 STEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGY 755

Query:   670 ---------KQQESFELTDEESASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHN 720
                      K +E  +  ++E     HSEK+A+AFGL++T    P+ V K+  +C DCHN
Sbjct:   756 VPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHN 815

Query:   721 FIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDF 754
              +K I++++ REI++RD  R H F +G C+C D+
Sbjct:   816 AMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDY 849

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)]

 Score = 1002 (357.8 bits), Expect = 2.5e-119, Sum P(2) = 2.5e-119
 Identities = 204/559 (36%), Positives = 325/559 (58%)

Query:   202 VKYQTED-DTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQG 260
             V Y  +D +T + NSL      CG +  A++ F R  EK+ +SW  +I    +NG A + 
Sbjct:   196 VFYGLDDRNTVMYNSLMGGLLACGMIEDALQLF-RGMEKDSVSWAAMIKGLAQNGLAKEA 254

Query:   261 LRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYL 320
             +  F +M  +G++ +++   S+   CG + ++  G Q+H+  I+  +  ++ V ++++ +
Sbjct:   255 IECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDM 314

Query:   321 YLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLN 380
             Y KC  +  A+ +FD M   N+V+W AM+ G+ Q                EA+ IF  + 
Sbjct:   315 YCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQT-----------GRAEEAVKIFLDMQ 363

Query:   381 SSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIE 440
              SG+ PD YT    ++ C+ + +LE+G Q H   + +G +  V V  +LV +Y KCG I+
Sbjct:   364 RSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDID 423

Query:   441 RASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACS 500
              ++R+F EM+ R  +SWT+M++ +A    + + +QLF+ M+  G++P+ VT  G ++ACS
Sbjct:   424 DSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACS 483

Query:   501 NAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIW 560
              AG+V +   YF++M  EY I P + HY C+ID+F R G +EEA  FI  M F P+ + W
Sbjct:   484 RAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGW 543

Query:   561 SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620
             +  ++ CR  GN+E+G +AAE L++L P     Y +L  I+ S G+W+ VA ++   RE+
Sbjct:   544 TTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREK 603

Query:   621 KLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTD- 679
              + +    SWI+ K K++SF  +D   P   +I+  L+EL  K    GYK   SF   D 
Sbjct:   604 NVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDV 663

Query:   680 EESASV----YHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIV 735
             EE+  V    YHSE+LAIAFGL+  P   PI V K+  +C DCHN  K I+S+T REI+V
Sbjct:   664 EEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILV 723

Query:   736 RDSKRLHKFVNGHCTCRDF 754
             RD+ R H+F +G C+C DF
Sbjct:   724 RDAVRFHRFKDGTCSCGDF 742

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)]

 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 250/690 (36%), Positives = 388/690 (56%)

Query:    70 PKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQ 129
             P V   +Y  LL+ C +   L   + IH  +VK+G   D F MT L N+Y KC  + EA+
Sbjct:   133 PVVYNFTY--LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEAR 190

Query:   130 KVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLE 189
             KVFD +P  ++VSW ++++GY QN    +A+ +   M E    P+ +T+ + L A S+L 
Sbjct:   191 KVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALR 250

Query:   190 SIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIG 249
              I +GK+IH Y ++   +   ++  +L  +Y+ CGSL +A + F+ + E+NV+SW ++I 
Sbjct:   251 LISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMID 310

Query:   250 ACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYAS 309
             A  +N    + +  F KML EG++P + ++      C  +  L  G  +H L ++LG   
Sbjct:   311 AYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDR 370

Query:   310 NLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGG 369
             N+ V NS++ +Y KC  VD A  +F  +    LV+WNAMI G AQ            NG 
Sbjct:   371 NVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQ------------NGR 418

Query:   370 T-EALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTA 428
               +AL+ FS++ S  +KPD +T+ S++T  + L      + IH + +++    +V V TA
Sbjct:   419 PIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTA 478

Query:   429 LVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN 488
             LV+MY KCG I  A  +F  MS R + +W +MI G+  H     AL+LFE+M    ++PN
Sbjct:   479 LVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPN 538

Query:   489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFI 548
              VTF+  ++ACS++G+V   L  F MM++ Y I+  MDHY  ++D+  R G + EA+DFI
Sbjct:   539 GVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFI 598

Query:   549 KKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWE 608
              +M  +P   ++   +  C+ H N+     AAE+L +L P D   + +L +I+ +A  WE
Sbjct:   599 MQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWE 658

Query:   609 DVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFG 668
              V  V+     + L +T   S + IK++V+SF      HP S +I+  L++L+   K  G
Sbjct:   659 KVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAG 718

Query:   669 YKQQESFELTDE----ESASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKI 724
             Y    +  L  E    E     HSEKLAI+FGLLNT   + I V K+  +C DCHN  K 
Sbjct:   719 YVPDTNLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKY 778

Query:   725 ITSLTAREIIVRDSKRLHKFVNGHCTCRDF 754
             I+ +T REI+VRD +R H F NG C+C D+
Sbjct:   779 ISLVTGREIVVRDMQRFHHFKNGACSCGDY 808

GO:0005739 "mitochondrion" evidence=ISM

GO:0004519 "endonuclease activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA;IMP

TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)]

 Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
 Identities = 245/670 (36%), Positives = 386/670 (57%)

Query:    96 IHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQ 155
             +H  +VK G  +   V   L+N+Y KCGN+ +A+ +FD     +VV+W S+ISGY  N  
Sbjct:   216 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGL 275

Query:   156 PELAIHVFLDMLEAGNYP--TNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVG 213
                A+ +F  M    NY   +  +  + +  C++L+ +R  +Q+H  VVKY    D ++ 
Sbjct:   276 DLEALGMFYSMRL--NYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR 333

Query:   214 NSLCSLYSTCGSLNSAIKAFNRIR-EKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGI 272
              +L   YS C ++  A++ F  I    NV+SWT +I    +N    + +  FS+M  +G+
Sbjct:   334 TALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGV 393

Query:   273 QPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQK 332
             +PNEFT     SV  T L +   ++VH+  +K  Y  +  V  +++  Y+K G V+EA K
Sbjct:   394 RPNEFTY----SVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAK 449

Query:   333 LFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEA-LSIFSKLNSSGMKPDLYTF 391
             +F G+   ++V W+AM+AG+AQ             G TEA + +F +L   G+KP+ +TF
Sbjct:   450 VFSGIDDKDIVAWSAMLAGYAQ------------TGETEAAIKMFGELTKGGIKPNEFTF 497

Query:   392 SSILTICSRLVA-LEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS 450
             SSIL +C+   A + QG+Q H   +K+   S + V +AL+ MY K G IE A  VF    
Sbjct:   498 SSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQR 557

Query:   451 TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALG 510
              + L+SW SMI+G+A H  + +AL +F++M    V+ + VTF+G  AAC++AG+V E   
Sbjct:   558 EKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEK 617

Query:   511 YFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRH 570
             YF++M ++ KI P  +H  C++D++ R G +E+A   I+ M       IW   +A CR H
Sbjct:   618 YFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVH 677

Query:   571 GNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSW 630
                ELG  AAE+++ +KP+D  +Y +L +++  +G W++ A V+ L  E  + +   +SW
Sbjct:   678 KKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSW 737

Query:   631 IRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTD-----EESASV 685
             I +K+K YSF   D  HP   +I+  L++L  + K  GY+   S+ L D     +E+   
Sbjct:   738 IEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLA 797

Query:   686 YHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFV 745
              HSE+LAIAFGL+ TP  SP+L++K+  +C DCH  IK+I  +  REI+VRDS R H F 
Sbjct:   798 QHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFS 857

Query:   746 N-GHCTCRDF 754
             + G C+C DF
Sbjct:   858 SDGVCSCGDF 867

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)]

 Score = 925 (330.7 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
 Identities = 198/542 (36%), Positives = 314/542 (57%)

Query:   220 YSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTL 279
             Y++ G + +A K F+ I  K+V+SW  +I    E G   + L  F  M+   ++P+E T+
Sbjct:   210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269

Query:   280 TSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH 339
              ++ S C    S+ +G QVH      G+ SNL++ N+++ LY KCG ++ A  LF+ + +
Sbjct:   270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329

Query:   340 VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICS 399
              ++++WN +I G+  M +L K          EAL +F ++  SG  P+  T  SIL  C+
Sbjct:   330 KDVISWNTLIGGYTHM-NLYK----------EALLLFQEMLRSGETPNDVTMLSILPACA 378

Query:   400 RLVALEQGEQIHALTLKT--GFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISW 457
              L A++ G  IH    K   G  +   + T+L++MY KCG IE A +VF  +  ++L SW
Sbjct:   379 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438

Query:   458 TSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK 517
              +MI GFA H  +  +  LF  M   G++P+ +TFVG L+ACS++GM+      F  M +
Sbjct:   439 NAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498

Query:   518 EYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGF 577
             +YK+ P ++HY C+ID+    G  +EA + I  M+ EP+ VIW   +  C+ HGN+ELG 
Sbjct:   499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGE 558

Query:   578 YAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKV 637
               AE L+K++P++  SY +L +I+ SAGRW +VA  + L  ++ + +    S I I   V
Sbjct:   559 SFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVV 618

Query:   638 YSFKPNDGLHPQSAEIFKVLDE---LVEKAKCFGYKQQESFELTDE--ESASVYHSEKLA 692
             + F   D  HP++ EI+ +L+E   L+EKA       +   E+ +E  E A  +HSEKLA
Sbjct:   619 HEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 678

Query:   693 IAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCR 752
             IAFGL++T   + + +VK+  +CR+CH   K+I+ +  REII RD  R H F +G C+C 
Sbjct:   679 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCN 738

Query:   753 DF 754
             D+
Sbjct:   739 DY 740

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)]

 Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
 Identities = 228/693 (32%), Positives = 389/693 (56%)

Query:    68 EGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEE 127
             +G +  +++  SL+  C    +L   + +HA+  K G   +  +   L+N+Y KC ++E 
Sbjct:   383 DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIET 442

Query:   128 AQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSS 187
             A   F      NVV W  ++  Y        +  +F  M      P   T  + L  C  
Sbjct:   443 ALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR 502

Query:   188 LESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTV 247
             L  + LG+QIH+ ++K   + +  V + L  +Y+  G L++A     R   K+V+SWTT+
Sbjct:   503 LGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTM 562

Query:   248 IGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGY 307
             I    +     + L  F +ML  GI+ +E  LT+  S C  + +L+ G Q+H+     G+
Sbjct:   563 IAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGF 622

Query:   308 ASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHN 367
             +S+L  +N+++ LY +CG ++E+   F+     + + WNA+++G  Q         S +N
Sbjct:   623 SSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQ---------SGNN 673

Query:   368 GGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGT 427
                EAL +F ++N  G+  + +TF S +   S    ++QG+Q+HA+  KTG+ S+  V  
Sbjct:   674 --EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCN 731

Query:   428 ALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRP 487
             AL++MY KCG I  A + F+E+ST+  +SW ++I  ++ H    +AL  F+ M+ + VRP
Sbjct:   732 ALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRP 791

Query:   488 NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDF 547
             N VT VG L+ACS+ G+V + + YFE M  EY + P  +HY+C++DM  R G +  A +F
Sbjct:   792 NHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEF 851

Query:   548 IKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRW 607
             I++M  +P+ ++W   ++ C  H NME+G +AA  LL+L+P+D  +Y +L +++  + +W
Sbjct:   852 IQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKW 911

Query:   608 EDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCF 667
             +   + +   +E+ + +    SWI +K+ ++SF   D  HP + EI +   +L ++A   
Sbjct:   912 DARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEI 971

Query:   668 GYKQQESFELTDE-----ESASVY-HSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNF 721
             GY Q + F L +E     +   ++ HSEKLAI+FGLL+ P   PI V+K+  +C DCH +
Sbjct:   972 GYVQ-DCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAW 1030

Query:   722 IKIITSLTAREIIVRDSKRLHKFVNGHCTCRDF 754
             IK ++ ++ REIIVRD+ R H F  G C+C+D+
Sbjct:  1031 IKFVSKVSNREIIVRDAYRFHHFEGGACSCKDY 1063

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
 Identities = 231/686 (33%), Positives = 386/686 (56%)

Query:    76 SYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNL 135
             +++ +L   V   SL+  + +H   +K G      V   L+N+Y K      A+ VFDN+
Sbjct:   317 TFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNM 376

Query:   136 PRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSL-ESIRLG 194
                +++SW S+I+G  QN     A+ +F+ +L  G  P   T+ + L A SSL E + L 
Sbjct:   377 SERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLS 436

Query:   195 KQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGEN 254
             KQ+H + +K     D+ V  +L   YS    +  A   F R    ++++W  ++    ++
Sbjct:   437 KQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQS 495

Query:   255 GEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVR 314
              +  + L+ F+ M  +G + ++FTL ++   CG + ++  G QVH+  IK GY  +L V 
Sbjct:   496 HDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS 555

Query:   315 NSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTE-AL 373
             + I+ +Y+KCG +  AQ  FD +   + V W  MI+G  +            NG  E A 
Sbjct:   556 SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIE------------NGEEERAF 603

Query:   374 SIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMY 433
              +FS++   G+ PD +T +++    S L ALEQG QIHA  LK    +D  VGT+LV+MY
Sbjct:   604 HVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMY 663

Query:   434 KKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFV 493
              KCG I+ A  +F  +    + +W +M+ G A H    + LQLF+ M   G++P++VTF+
Sbjct:   664 AKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFI 723

Query:   494 GALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDF 553
             G L+ACS++G+V EA  +   M  +Y IKP ++HY CL D   R G +++A + I+ M  
Sbjct:   724 GVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSM 783

Query:   554 EPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV 613
             E +  ++   +A CR  G+ E G   A +LL+L+P D  +Y +L +++ +A +W+++ + 
Sbjct:   784 EASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLA 843

Query:   614 KNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQE 673
             + + +  K+ +   +SWI +K+K++ F  +D  + Q+  I++ + +++   K  GY  + 
Sbjct:   844 RTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPET 903

Query:   674 SFELTD-----EESASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSL 728
              F L D     +E A  YHSEKLA+AFGLL+TP  +PI V+K+  +C DCHN +K I  +
Sbjct:   904 DFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKV 963

Query:   729 TAREIIVRDSKRLHKFVNGHCTCRDF 754
               REI++RD+ R H+F +G C+C D+
Sbjct:   964 YNREIVLRDANRFHRFKDGICSCGDY 989

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 230/690 (33%), Positives = 383/690 (55%)

Query:    69 GPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEA 128
             G K    ++  +L+ C     L+  + +H H+V+ G   D  V+  L+ +Y KCG+++ A
Sbjct:   191 GVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSA 250

Query:   129 QKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSL 188
             + +FD +PR +++SW ++ISGY +N      + +F  M      P  +TL + ++AC  L
Sbjct:   251 RLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELL 310

Query:   189 ESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVI 248
                RLG+ IHAYV+      D SV NSL  +Y   GS   A K F+R+  K+++SWTT+I
Sbjct:   311 GDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMI 370

Query:   249 GACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYA 308
                  N    + +  +  M  + ++P+E T+ ++ S C T+  L  G ++H L IK    
Sbjct:   371 SGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLI 430

Query:   309 SNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNG 368
             S + V N+++ +Y KC  +D+A  +F  +   N+++W ++IAG           L  +N 
Sbjct:   431 SYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAG-----------LRLNNR 479

Query:   369 GTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTA 428
               EAL IF +     ++P+  T ++ L  C+R+ AL  G++IHA  L+TG   D  +  A
Sbjct:   480 CFEAL-IFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNA 538

Query:   429 LVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN 488
             L++MY +CGR+  A   F     + + SW  ++TG++        ++LF+ M+ + VRP+
Sbjct:   539 LLDMYVRCGRMNTAWSQF-NSQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPD 597

Query:   489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFI 548
             ++TF+  L  CS + MV + L YF  M+ +Y + P + HY C++D+  R G ++EA  FI
Sbjct:   598 EITFISLLCGCSKSQMVRQGLMYFSKME-DYGVTPNLKHYACVVDLLGRAGELQEAHKFI 656

Query:   549 KKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWE 608
             +KM   P+  +W   +  CR H  ++LG  +A+ + +L  K    Y +L +++   G+W 
Sbjct:   657 QKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWR 716

Query:   609 DVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFG 668
             +VA V+ + +E  L+     SW+ +K KV++F  +D  HPQ+ EI  VL+   EK    G
Sbjct:   717 EVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVG 776

Query:   669 Y-KQQESFELTDEESA--SVY--HSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIK 723
               K  ES  + + E +   ++  HSE+ AIAFGL+NT    PI V K+ +MC +CH+ +K
Sbjct:   777 LTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVK 836

Query:   724 IITSLTAREIIVRDSKRLHKFVNGHCTCRD 753
              I+    REI VRD++  H F +G C+C D
Sbjct:   837 FISKTVRREISVRDAEHFHHFKDGECSCGD 866

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)]

 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 249/701 (35%), Positives = 391/701 (55%)

Query:    72 VQTSSYVSLLQE-----CVNRKSLSNAEIIHAHIVKTGSHQDFFVM--TFLVNVYGKCGN 124
             V   SYV LL             L     +H H++ TG   DF V     LVN+Y KCG+
Sbjct:   306 VSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGL-VDFMVGIGNGLVNMYAKCGS 364

Query:   125 MEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTA 184
             + +A++VF  +   + VSW S+I+G  QN     A+  +  M      P + TL ++L++
Sbjct:   365 IADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSS 424

Query:   185 CSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSW 244
             C+SL+  +LG+QIH   +K   + + SV N+L +LY+  G LN   K F+ + E + +SW
Sbjct:   425 CASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSW 484

Query:   245 TTVIGACGENGEAV-QGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGI 303
              ++IGA   +  ++ + +  F      G + N  T +S+ S   ++    +G Q+H L +
Sbjct:   485 NSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLAL 544

Query:   304 KLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHV-NLVTWNAMIAGHAQMMDLAKDD 362
             K   A      N+++  Y KCG +D  +K+F  M+   + VTWN+MI+G+     LAK  
Sbjct:   545 KNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAK-- 602

Query:   363 LSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSD 422
                      AL +   +  +G + D + ++++L+  + +  LE+G ++HA +++    SD
Sbjct:   603 ---------ALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESD 653

Query:   423 VVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLL 482
             VVVG+ALV+MY KCGR++ A R F  M  R   SW SMI+G+A H    +AL+LFE M L
Sbjct:   654 VVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKL 713

Query:   483 AG-VRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCI 541
              G   P+ VTFVG L+ACS+AG++ E   +FE M   Y + P ++H+ C+ D+  R G +
Sbjct:   714 DGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGEL 773

Query:   542 EEAFDFIKKMDFEPNEVIW-SVFIAGCRRHGNM-ELGFYAAEQLLKLKPKDCESYAMLLD 599
             ++  DFI+KM  +PN +IW +V  A CR +G   ELG  AAE L +L+P++  +Y +L +
Sbjct:   774 DKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGN 833

Query:   600 IFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDE 659
             ++ + GRWED+   +   ++  + +   +SW+ +KD V+ F   D  HP +  I+K L E
Sbjct:   834 MYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKE 893

Query:   660 LVEKAKCFGYKQQESFELTD-----EESASVYHSEKLAIAFGLL-NTPIVSPILVVKSTT 713
             L  K +  GY  Q  F L D     +E    YHSEKLA+AF L        PI ++K+  
Sbjct:   894 LNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLR 953

Query:   714 MCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDF 754
             +C DCH+  K I+ +  R+II+RDS R H F +G C+C DF
Sbjct:   954 VCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDF 994

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009451 "RNA modification" evidence=IMP

TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)]

 Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
 Identities = 222/667 (33%), Positives = 371/667 (55%)

Query:    96 IHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQ 155
             IH  +VK G      V   L+ +Y   G   EA  VF  +P  +++SW SL++ +V + +
Sbjct:   283 IHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGR 342

Query:   156 PELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNS 215
                A+ +   M+ +G     VT  +AL AC + +    G+ +H  VV      +  +GN+
Sbjct:   343 SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA 402

Query:   216 LCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPN 275
             L S+Y   G ++ + +   ++  ++V++W  +IG   E+ +  + L  F  M  EG+  N
Sbjct:   403 LVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSN 462

Query:   276 EFTLTSISSVC---GTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQK 332
               T+ S+ S C   G +L    G  +H+  +  G+ S+  V+NS++ +Y KCG +  +Q 
Sbjct:   463 YITVVSVLSACLLPGDLLER--GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQD 520

Query:   333 LFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFS 392
             LF+G+ + N++TWNAM+A +A            H  G E L + SK+ S G+  D ++FS
Sbjct:   521 LFNGLDNRNIITWNAMLAANAH-----------HGHGEEVLKLVSKMRSFGVSLDQFSFS 569

Query:   393 SILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR 452
               L+  ++L  LE+G+Q+H L +K GF  D  +  A  +MY KCG I    ++      R
Sbjct:   570 EGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNR 629

Query:   453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYF 512
             +L SW  +I+    H    +    F +ML  G++P  VTFV  L ACS+ G+V + L Y+
Sbjct:   630 SLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYY 689

Query:   513 EMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGN 572
             +M+ +++ ++P ++H +C+ID+  R G + EA  FI KM  +PN+++W   +A C+ HGN
Sbjct:   690 DMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGN 749

Query:   573 MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIR 632
             ++ G  AAE L KL+P+D   Y +  ++F + GRWEDV  V+     + + +    SW++
Sbjct:   750 LDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVK 809

Query:   633 IKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFEL--TDEESA--SVY-H 687
             +KDKV SF   D  HPQ+ EI+  L+++ +  K  GY    S  L  TDEE    +++ H
Sbjct:   810 LKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNH 869

Query:   688 SEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNG 747
             SE+LA+A+ L++TP  S + + K+  +C DCH+  K ++ +  R I++RD  R H F  G
Sbjct:   870 SERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERG 929

Query:   748 HCTCRDF 754
              C+C+D+
Sbjct:   930 LCSCKDY 936

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	758
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-170
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-154
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-88
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-55
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-36
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-16
pfam14432	116	pfam14432, DYW_deaminase, DYW family of nucleic ac	3e-13
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-05
pfam01535	31	pfam01535, PPR, PPR repeat	6e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.001
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.002
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.004

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  512 bits (1320), Expect = e-170
 Identities = 247/703 (35%), Positives = 399/703 (56%), Gaps = 21/703 (2%)

Query: 59  FQEALS----VLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTF 114
           F EAL     +L  G +    ++  +L+ C     L+    +HAH+V+ G   D  V+  
Sbjct: 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227

Query: 115 LVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPT 174
           L+ +Y KCG++  A+ VFD +PR + +SW ++ISGY +N +    + +F  M E    P 
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287

Query: 175 NVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFN 234
            +T+ + ++AC  L   RLG+++H YVVK     D SV NSL  +Y + GS   A K F+
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347

Query: 235 RIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRV 294
           R+  K+ +SWT +I    +NG   + L  ++ M  + + P+E T+ S+ S C  +  L V
Sbjct: 348 RMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407

Query: 295 GAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQ 354
           G ++H L  + G  S + V N+++ +Y KC  +D+A ++F  +   ++++W ++IAG   
Sbjct: 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG--- 464

Query: 355 MMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALT 414
                   L  +N   EAL  F ++  + +KP+  T  + L+ C+R+ AL  G++IHA  
Sbjct: 465 --------LRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHV 515

Query: 415 LKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQAL 474
           L+TG   D  +  AL+++Y +CGR+  A   F     + ++SW  ++TG+  H     A+
Sbjct: 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAV 574

Query: 475 QLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDM 534
           +LF  M+ +GV P++VTF+  L ACS +GMV + L YF  M+++Y I P + HY C++D+
Sbjct: 575 ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634

Query: 535 FVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESY 594
             R G + EA++FI KM   P+  +W   +  CR H ++ELG  AA+ + +L P     Y
Sbjct: 635 LGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY 694

Query: 595 AMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIF 654
            +L +++  AG+W++VA V+   RE  L+     SW+ +K KV++F  +D  HPQ  EI 
Sbjct: 695 ILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEIN 754

Query: 655 KVLDELVEKAKCFGYKQQESFELTDEE--SASVY--HSEKLAIAFGLLNTPIVSPILVVK 710
            VL+   EK K  G    ES  + + E     ++  HSE+LAIAFGL+NT    PI V K
Sbjct: 755 TVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTK 814

Query: 711 STTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRD 753
           +  MC +CHN +K I+ +  REI VRD+++ H F +G C+C D
Sbjct: 815 NLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  465 bits (1197), Expect = e-154
 Identities = 211/578 (36%), Positives = 332/578 (57%), Gaps = 16/578 (2%)

Query: 182 LTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNV 241
           + AC +L+SIR  K ++ +V     E D  + N +  ++  CG L  A + F+ + E+N+
Sbjct: 130 VEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL 189

Query: 242 MSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSL 301
            SW T+IG   + G   +    F +M  +G      T   +      + S R G Q+H  
Sbjct: 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249

Query: 302 GIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKD 361
            +K G   +  V  +++ +Y KCG +++A+ +FDGM     V WN+M+AG+A        
Sbjct: 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA-------- 301

Query: 362 DLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLS 421
               H    EAL ++ ++  SG+  D +TFS ++ I SRL  LE  +Q HA  ++TGF  
Sbjct: 302 ---LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358

Query: 422 DVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDML 481
           D+V  TALV++Y K GR+E A  VF  M  + LISW ++I G+ NH    +A+++FE M+
Sbjct: 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418

Query: 482 LAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCI 541
             GV PN VTF+  L+AC  +G+  +    F+ M + ++IKP   HY C+I++  R G +
Sbjct: 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478

Query: 542 EEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF 601
           +EA+  I++  F+P   +W+  +  CR H N+ELG  AAE+L  + P+   +Y +LL+++
Sbjct: 479 DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538

Query: 602 VSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELV 661
            S+GR  + A V    + + LS     +WI +K + +SF   D LHPQS EI++ LDEL+
Sbjct: 539 NSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELM 598

Query: 662 EKAKCFGYKQQESFELTD-----EESASVYHSEKLAIAFGLLNTPIVSPILVVKSTTMCR 716
           ++   +GY  +E+  L D     E+ +  YHSEKLAIAFGL+NT   +P+ + +S  +C+
Sbjct: 599 KEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICK 658

Query: 717 DCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDF 754
           DCH  IK I  +T REI+VRD+ R H F  G C+C D+
Sbjct: 659 DCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDY 696

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  297 bits (762), Expect = 1e-88
 Identities = 171/643 (26%), Positives = 312/643 (48%), Gaps = 82/643 (12%)

Query: 15  ETKSRQPSSSLATLKDKNHTVSYQRSGSKLIQLNGNSEPVRSLGFQEALSVLTEGPKVQT 74
             +SR  S + ++      + S   S S+L  L  + +       ++AL +L    +++ 
Sbjct: 35  RKRSRGLSVAASS------SSSTHDSNSQLRALCSHGQ------LEQALKLLESMQELRV 82

Query: 75  S----SYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQK 130
                +YV+L + C  ++++     + +  + +       +   +++++ + G +  A  
Sbjct: 83  PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWY 142

Query: 131 VFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLES 190
           VF  +P  ++ SW  L+ GY +    + A+ ++  ML AG  P   T    L  C  +  
Sbjct: 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202

Query: 191 IRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGA 250
           +  G+++HA+VV++  E D  V N+L ++Y  CG + SA   F+R+  ++ +SW  +I  
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262

Query: 251 CGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASN 310
             ENGE ++GL  F  M    + P+  T+TS+ S C  +   R+G ++H   +K G+A +
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322

Query: 311 LRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGT 370
           + V NS++ +YL  G   EA+K+F  M   + V+W AMI+G+ +            NG  
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK------------NGLP 370

Query: 371 E-ALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTAL 429
           + AL  ++ +    + PD  T +S+L+ C+ L  L+ G ++H L  + G +S VVV  AL
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430

Query: 430 VNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ 489
           + MY KC  I++A  VF  +  + +ISWTS+I G   ++   +AL  F  MLL  ++PN 
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNS 489

Query: 490 VTFVGALAACSNAGMVYEALGYFEMMQKE---YKIKPVM--DHYM--CLIDMFVRLGCIE 542
           VT + AL+AC+  G    AL    M  KE   + ++  +  D ++   L+D++VR G + 
Sbjct: 490 VTLIAALSACARIG----AL----MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541

Query: 543 EA---------------------------------FDFIKKMDFEPNEVIWSVFIAGCRR 569
            A                                 F+ + +    P+EV +   +  C R
Sbjct: 542 YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601

Query: 570 HGNMELG---FYAAEQLLKLKPKDCESYAMLLDIFVSAGRWED 609
            G +  G   F++ E+   + P + + YA ++D+   AG+  +
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTE 643

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  200 bits (511), Expect = 5e-55
 Identities = 94/340 (27%), Positives = 179/340 (52%), Gaps = 11/340 (3%)

Query: 71  KVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQK 130
            +  S+Y +L++ C+  KS+   + ++ H+  +G   D ++M  ++ ++ KCG + +A++
Sbjct: 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179

Query: 131 VFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLES 190
           +FD +P  N+ SW ++I G V       A  +F +M E G+     T    L A + L S
Sbjct: 180 LFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239

Query: 191 IRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGA 250
            R G+Q+H  V+K     DT V  +L  +YS CG +  A   F+ + EK  ++W +++  
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299

Query: 251 CGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASN 310
              +G + + L  + +M   G+  ++FT + +  +   +  L    Q H+  I+ G+  +
Sbjct: 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359

Query: 311 LRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGT 370
           +    +++ LY K G +++A+ +FD M   NL++WNA+IAG+             H  GT
Sbjct: 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN-----------HGRGT 408

Query: 371 EALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQI 410
           +A+ +F ++ + G+ P+  TF ++L+ C      EQG +I
Sbjct: 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  146 bits (370), Expect = 2e-36
 Identities = 98/397 (24%), Positives = 179/397 (45%), Gaps = 65/397 (16%)

Query: 68  EGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEE 127
           +G   +  ++V +L+      S    + +H  ++KTG   D FV   L+++Y KCG++E+
Sbjct: 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277

Query: 128 AQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSS 187
           A+ VFD +P    V+W S+++GY  +   E A+ ++ +M ++G      T    +   S 
Sbjct: 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337

Query: 188 LESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTV 247
           L  +   KQ HA +++     D     +L  LYS  G +  A   F+R+  KN++SW  +
Sbjct: 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNAL 397

Query: 248 IGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGY 307
           I   G +G   + +  F +M++EG+ PN  T  ++ S C                     
Sbjct: 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC--------------------- 436

Query: 308 ASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHN 367
                 R S        GL ++  ++F  MS  + +   AM   +A M++L         
Sbjct: 437 ------RYS--------GLSEQGWEIFQSMSENHRIKPRAM--HYACMIELL-------- 472

Query: 368 GGTEAL--SIFSKLNSSGMKPDLYTFSSILTIC--------SRLVALEQGEQIHALTLKT 417
            G E L    ++ +  +  KP +  ++++LT C         RL A    E+++ +  + 
Sbjct: 473 -GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAA----EKLYGMGPEK 527

Query: 418 GFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTL 454
             L++ VV   L+N+Y   GR   A++V   +  + L
Sbjct: 528 --LNNYVV---LLNLYNSSGRQAEAAKVVETLKRKGL 559

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 83.8 bits (207), Expect = 1e-16
 Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 12/155 (7%)

Query: 47  LNGNSEPVRSLGFQEALSVLTE----GPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVK 102
           L+G SE        EAL +  E    G  +   ++  +++       L +A+  HA +++
Sbjct: 302 LHGYSE--------EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353

Query: 103 TGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHV 162
           TG   D    T LV++Y K G ME+A+ VFD +PR N++SW +LI+GY  + +   A+ +
Sbjct: 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEM 413

Query: 163 FLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQI 197
           F  M+  G  P +VT    L+AC        G +I
Sbjct: 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448

Length = 697

>gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 40/118 (33%), Positives = 50/118 (42%), Gaps = 22/118 (18%)

Query: 638 YSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESF---ELTDEE--------SASVY 686
                 DG HP S E      EL ++ K  G   +      ++  EE             
Sbjct: 9   KKTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKGKLLAS 62

Query: 687 HSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKF 744
           H+EK A+A+GLL T I+          MC DCH F + I   T REIIVRD  R H F
Sbjct: 63  HAEKQALAYGLLTTRIIK-----VLKRMCGDCHEFFRYIAKYTGREIIVRDPSRFHHF 115

A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 105/559 (18%), Positives = 196/559 (35%), Gaps = 104/559 (18%)

Query: 13  TLETKSRQPSSSLATLKDKNHTVSYQRSGSKLIQLNGNSEPVRSLGFQEALSVLTEGPKV 72
            L       ++SL+  K  N     +  G    Q   + E   SL               
Sbjct: 313 GLRKGVSSATNSLSLDKKNNGVKDAELPGQSSGQAASDVEEENSLAAYNGGVSGKRKSPE 372

Query: 73  QTSSYVSLL-----QECV------NRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGK 121
              +Y  LL     ++C+       ++ L + + I+        H  FF          K
Sbjct: 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIY--------HAKFF------KACKK 418

Query: 122 CGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTA 181
              ++EA +    +    + ++  L+S    +   + A+ V   + EAG         T 
Sbjct: 419 QRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478

Query: 182 LTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNV 241
           ++ C+    +    ++   +V    E +     +L    +  G +  A  A+  +R KNV
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538

Query: 242 ----MSWTTVIGACGENGEAVQGLRFF---SKMLSEG--IQPNEFTLTSISSVCGTM--- 289
               + +  +I ACG++G AV   R F   ++M +E   I P+  T+ ++   C      
Sbjct: 539 KPDRVVFNALISACGQSG-AVD--RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595

Query: 290 -LSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNL----VT 344
             +  V   +H   IK        V    +    + G  D A  ++D M    +    V 
Sbjct: 596 DRAKEVYQMIHEYNIK----GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651

Query: 345 WNAMI--AGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRL- 401
           ++A++  AGHA  +D             +A  I       G+K    ++SS++  CS   
Sbjct: 652 FSALVDVAGHAGDLD-------------KAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698

Query: 402 ---VALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWT 458
               ALE  E I ++ L+                                    T+ +  
Sbjct: 699 NWKKALELYEDIKSIKLRP-----------------------------------TVSTMN 723

Query: 459 SMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKE 518
           ++IT     +   +AL++  +M   G+ PN +T+   L A          L      +++
Sbjct: 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783

Query: 519 YKIKPVMDHYMCLIDMFVR 537
             IKP +    C+  + +R
Sbjct: 784 -GIKPNLVMCRCITGLCLR 801

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 60.3 bits (146), Expect = 3e-09
 Identities = 79/391 (20%), Positives = 157/391 (40%), Gaps = 78/391 (19%)

Query: 250 ACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTML----SLRVGAQVHSLGIKL 305
           AC +     +  RF   + +  +     T   + SVC +      +LRV   V   G+K 
Sbjct: 415 ACKKQRAVKEAFRFAKLIRNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLK- 469

Query: 306 GYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHV----NLVTWNAMIAGHAQMMDLAKD 361
              ++ ++  +++    K G VD   ++F  M +     N+ T+ A+I G A+   +AK 
Sbjct: 470 ---ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK- 525

Query: 362 DLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHA-LTLKTG-F 419
                     A   +  + S  +KPD   F+++++ C +  A+++   + A +  +T   
Sbjct: 526 ----------AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575

Query: 420 LSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQ-----AL 474
             D +   AL+      G+++RA  V+ +M     I  T  +   A +S S +     AL
Sbjct: 576 DPDHITVGALMKACANAGQVDRAKEVY-QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634

Query: 475 QLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQ------------------ 516
            +++DM   GV+P++V F   +    +AG + +A   FE++Q                  
Sbjct: 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA---FEILQDARKQGIKLGTVSYSSLM 691

Query: 517 -------------------KEYKIKPVMDHYMCLIDMFVRLGCIEEAFDF---IKKMDFE 554
                              K  K++P +     LI        + +A +    +K++   
Sbjct: 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751

Query: 555 PNEVIWSVFIAGCRRHGNMELGFYAAEQLLK 585
           PN + +S+ +    R  + ++G     Q  +
Sbjct: 752 PNTITYSILLVASERKDDADVGLDLLSQAKE 782

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 12/44 (27%), Positives = 27/44 (61%)

Query: 239 KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSI 282
            +V+++ T+I    + G+  + L+ F++M   GI+PN +T + +
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 139 NVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTAC 185
           +VV++ +LI GY +  + E A+ +F +M + G  P   T    +   
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 44.3 bits (106), Expect = 3e-06
 Identities = 11/38 (28%), Positives = 23/38 (60%)

Query: 455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTF 492
           +++ ++I G+       +AL+LF +M   G++PN  T+
Sbjct: 4   VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 95/451 (21%), Positives = 175/451 (38%), Gaps = 73/451 (16%)

Query: 70  PKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQ 129
           P + T  +  L+  C + + +  A  +   + + G   D  + T L++   K G ++   
Sbjct: 435 PTLST--FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492

Query: 130 KVFDNLP----RINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTAC 185
           +VF  +       NV ++ +LI G  +  Q   A   +  M      P  V     ++AC
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552

Query: 186 SSLESIRLGKQIHAYVV----KYQTE----DDTSVGNSLCSLYSTC---GSLNSAIKAFN 234
                 + G    A+ V    K +T     D  +VG    +L   C   G ++ A + + 
Sbjct: 553 G-----QSGAVDRAFDVLAEMKAETHPIDPDHITVG----ALMKACANAGQVDRAKEVYQ 603

Query: 235 RIREKNVMS----WTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCG--T 288
            I E N+      +T  + +C + G+    L  +  M  +G++P+E   +++  V G   
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663

Query: 289 ML--SLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLV--- 343
            L  +  +       GIKLG  S     +S+M          +A +L++ +  + L    
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVS----YSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719

Query: 344 -TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLV 402
            T NA+I             L   N   +AL + S++   G+ P+  T+S +L    R  
Sbjct: 720 STMNALITA-----------LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768

Query: 403 ALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERA---SRVFVEM-STRTLIS-- 456
             + G  + +   + G   ++V+   +  +  +  R E+A       V   S R  I   
Sbjct: 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENK 826

Query: 457 WTSMITGFANHSLSHQALQLFEDMLLAGVRP 487
           WTS             AL ++ + + AG  P
Sbjct: 827 WTSW------------ALMVYRETISAGTLP 845

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 11/55 (20%)

Query: 341 NLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSIL 395
           ++VT+N +I G+ +   +            EAL +F+++   G+KP++YT+S ++
Sbjct: 2   DVVTYNTLIDGYCKKGKV-----------EEALKLFNEMKKRGIKPNVYTYSILI 45

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 141 VSWTSLISGYVQNSQPELAIHVFLDMLEAG 170
           V++ SLISGY +  + E A+ +F +M E G
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKG 30

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 41.0 bits (94), Expect = 0.001
 Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 4/142 (2%)

Query: 472 QALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM-DHYMC 530
           +AL+L E  L     P+    + AL A    G   EAL  +E   +       + +  + 
Sbjct: 113 EALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLA 172

Query: 531 LIDMFVRLGCIEEAFDFIKK-MDFEPNEVIWSVFIAG--CRRHGNMELGFYAAEQLLKLK 587
           L  +   LG  EEA + ++K +   P++   ++   G    + G  E      E+ L+L 
Sbjct: 173 LGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232

Query: 588 PKDCESYAMLLDIFVSAGRWED 609
           P + E+   L  + +  GR+E+
Sbjct: 233 PDNAEALYNLALLLLELGRYEE 254

Length = 291

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 141 VSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPT 174
           V++ +LI G  +  + E A+ +F +M E G  P 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 36.6 bits (86), Expect = 0.002
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 315 NSIMYLYLKCGLVDEAQKLFDGMS----HVNLVTWNAMIAGHAQ 354
           N+++  Y K G V+EA KLF+ M       N+ T++ +I G  +
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 36.6 bits (86), Expect = 0.002
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 528 YMCLIDMFVRLGCIEEAFDFIKKM---DFEPNEVIWSVFIAGC 567
           Y  LID + + G +EEA     +M     +PN   +S+ I G 
Sbjct: 6   YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 242 MSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNE 276
           +++ T+I    + G   + L  F +M   GI+P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN 488
           +++ ++I G        +AL+LF++M   G+ P+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 35.5 bits (83), Expect = 0.004
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 422 DVVVGTALVNMYKKCGRIERASRVFVEMSTR----TLISWTSMITGFAN 466
           DVV    L++ Y K G++E A ++F EM  R     + +++ +I G   
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	758
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	99.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.95
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.95
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.93
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.9
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.88
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.86
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.83
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.82
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.82
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.79
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.78
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.78
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.78
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.76
PRK14574	822	hmsH outer membrane protein; Provisional	99.76
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.74
PRK14574	822	hmsH outer membrane protein; Provisional	99.73
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.69
KOG2003	840	consensus TPR repeat-containing protein [General f	99.68
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.64
KOG2076	895	consensus RNA polymerase III transcription factor	99.64
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.63
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.62
KOG2076	895	consensus RNA polymerase III transcription factor	99.58
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.57
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.52
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.48
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.47
KOG1126	638	consensus DNA-binding cell division cycle control	99.47
KOG2003	840	consensus TPR repeat-containing protein [General f	99.45
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.43
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.41
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.41
KOG1126	638	consensus DNA-binding cell division cycle control	99.39
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.39
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.38
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.36
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.35
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.35
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.33
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.32
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.32
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.26
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.24
PF13041	50	PPR_2: PPR repeat family	99.24
PF13041	50	PPR_2: PPR repeat family	99.23
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.22
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.2
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.17
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.17
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.17
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.15
PRK12370	553	invasion protein regulator; Provisional	99.11
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.1
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.08
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.07
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.05
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.05
PRK11189	296	lipoprotein NlpI; Provisional	99.05
PRK12370	553	invasion protein regulator; Provisional	99.05
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.04
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.02
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.0
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.98
PRK11189	296	lipoprotein NlpI; Provisional	98.97
KOG1129	478	consensus TPR repeat-containing protein [General f	98.97
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.96
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.95
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.93
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.92
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.86
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.85
KOG1129	478	consensus TPR repeat-containing protein [General f	98.83
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.83
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.8
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.79
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.77
KOG1125	579	consensus TPR repeat-containing protein [General f	98.75
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.74
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.73
PRK04841	903	transcriptional regulator MalT; Provisional	98.68
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.68
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.66
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.64
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.63
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.61
PRK15359	144	type III secretion system chaperone protein SscB;	98.58
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.58
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.53
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.53
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.51
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.5
PRK15359	144	type III secretion system chaperone protein SscB;	98.5
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.49
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.48
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.47
PLN02789	320	farnesyltranstransferase	98.46
PF12854	34	PPR_1: PPR repeat	98.45
PF12854	34	PPR_1: PPR repeat	98.43
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.41
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.41
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.4
PRK04841	903	transcriptional regulator MalT; Provisional	98.39
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.36
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.32
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.3
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.3
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.29
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.28
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.28
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.27
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.25
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.21
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.2
PLN02789	320	farnesyltranstransferase	98.19
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.18
KOG1125	579	consensus TPR repeat-containing protein [General f	98.13
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.12
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.11
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.1
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.07
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.07
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.07
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.04
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.0
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.98
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.95
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.95
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.92
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.87
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.86
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.84
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.83
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.82
KOG0553	304	consensus TPR repeat-containing protein [General f	97.8
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.78
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.75
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.73
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.73
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.72
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.7
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.68
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.67
PRK15331	165	chaperone protein SicA; Provisional	97.65
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.64
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.63
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.63
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.6
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.59
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.59
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.55
KOG0553	304	consensus TPR repeat-containing protein [General f	97.54
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.53
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.49
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.47
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.47
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.46
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.43
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.41
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.36
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.36
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.34
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.31
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.23
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.2
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.19
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.17
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.1
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.1
PF13371	73	TPR_9: Tetratricopeptide repeat	97.1
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.04
PF13431	34	TPR_17: Tetratricopeptide repeat	97.01
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.99
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.96
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.95
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.94
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.92
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.9
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.86
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.86
PF12688	120	TPR_5: Tetratrico peptide repeat	96.86
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	96.83
PF13371	73	TPR_9: Tetratricopeptide repeat	96.82
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	96.82
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.82
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.81
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.8
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.74
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.73
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.69
PRK10803	263	tol-pal system protein YbgF; Provisional	96.69
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.66
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	96.65
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.65
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.63
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.62
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	96.58
PF12688	120	TPR_5: Tetratrico peptide repeat	96.57
PF13428	44	TPR_14: Tetratricopeptide repeat	96.55
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.54
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.39
PRK10803	263	tol-pal system protein YbgF; Provisional	96.36
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.05
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.04
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.01
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.95
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.89
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.87
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.86
KOG4555	175	consensus TPR repeat-containing protein [Function	95.73
PRK11906	458	transcriptional regulator; Provisional	95.7
KOG1258	577	consensus mRNA processing protein [RNA processing	95.67
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.64
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.54
PRK11906	458	transcriptional regulator; Provisional	95.44
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.41
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.41
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.38
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.37
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	95.32
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.29
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.22
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.17
KOG1585	308	consensus Protein required for fusion of vesicles	95.08
PF13512	142	TPR_18: Tetratricopeptide repeat	95.02
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.92
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.84
KOG3941	406	consensus Intermediate in Toll signal transduction	94.79
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.27
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.17
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.14
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.06
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.97
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.96
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.85
COG4105	254	ComL DNA uptake lipoprotein [General function pred	93.78
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.71
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.65
PF13512	142	TPR_18: Tetratricopeptide repeat	93.61
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	93.58
KOG3941	406	consensus Intermediate in Toll signal transduction	93.54
COG4105	254	ComL DNA uptake lipoprotein [General function pred	93.52
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	93.49
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.37
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.3
PRK15331	165	chaperone protein SicA; Provisional	93.25
KOG4234	271	consensus TPR repeat-containing protein [General f	93.18
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.14
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.12
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.09
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.03
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.83
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.68
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.62
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.55
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	92.39
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.28
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.24
KOG1941	518	consensus Acetylcholine receptor-associated protei	91.91
PF13428	44	TPR_14: Tetratricopeptide repeat	91.45
KOG4555	175	consensus TPR repeat-containing protein [Function	91.4
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	90.86
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.78
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	90.23
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	90.15
PRK09687	280	putative lyase; Provisional	90.14
PRK09687	280	putative lyase; Provisional	89.94
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	89.74
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	89.58
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.37
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	89.33
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	89.07
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.94
KOG3364	149	consensus Membrane protein involved in organellar	88.93
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	88.85
KOG4648	536	consensus Uncharacterized conserved protein, conta	88.49
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.46
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	88.14
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	87.84
PRK10941	269	hypothetical protein; Provisional	87.55
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	87.05
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	87.02
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	86.87
KOG1586	288	consensus Protein required for fusion of vesicles	85.81
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	85.73
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	85.6
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	84.93
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	84.85
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	84.81
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	84.42
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	84.41
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	83.81
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	83.48
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	83.31
KOG1585	308	consensus Protein required for fusion of vesicles	82.51
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.19
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	81.93
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	81.84
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	81.42
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	81.34
KOG4570	418	consensus Uncharacterized conserved protein [Funct	81.33
COG3629	280	DnrI DNA-binding transcriptional activator of the	81.21
COG3947	361	Response regulator containing CheY-like receiver a	80.83
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	80.53
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	80.43
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	80.05

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=5.2e-135  Score=1183.14  Aligned_cols=690  Identities=35%  Similarity=0.648  Sum_probs=680.1

Q ss_pred             CCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHH
Q 004369           51 SEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQK  130 (758)
Q Consensus        51 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  130 (758)
                      ..|++++|+++|.+|...|+.||.+||+.++++|+..+++..+.++|..+++.|+.||+.++|+||++|+++|++++|.+
T Consensus       164 ~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~  243 (857)
T PLN03077        164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL  243 (857)
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCCh
Q 004369          131 VFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDT  210 (758)
Q Consensus       131 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~  210 (758)
                      +|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|+++|..+.+.|+.||.
T Consensus       244 lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~  323 (857)
T PLN03077        244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV  323 (857)
T ss_pred             HHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccC
Q 004369          211 SVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTML  290 (758)
Q Consensus       211 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~  290 (758)
                      .+||+|+++|+++|++++|.++|++|.+||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|
T Consensus       324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g  403 (857)
T PLN03077        324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG  403 (857)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChh
Q 004369          291 SLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGT  370 (758)
Q Consensus       291 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~  370 (758)
                      +++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++           +|+.+
T Consensus       404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~-----------~g~~~  472 (857)
T PLN03077        404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL-----------NNRCF  472 (857)
T ss_pred             hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH-----------CCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999           99999


Q ss_pred             HHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC
Q 004369          371 EALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS  450 (758)
Q Consensus       371 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~  450 (758)
                      +|+.+|++|.. +++||..||+++|.+|++.|+++.+.++|..+.+.|+.+|..++|+|+++|+|+|++++|.++|+++ 
T Consensus       473 eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-  550 (857)
T PLN03077        473 EALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-  550 (857)
T ss_pred             HHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-
Confidence            99999999986 5999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHH
Q 004369          451 TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMC  530 (758)
Q Consensus       451 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~  530 (758)
                      .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++
T Consensus       551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~  630 (857)
T PLN03077        551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC  630 (857)
T ss_pred             CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999977899999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhH
Q 004369          531 LIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDV  610 (758)
Q Consensus       531 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  610 (758)
                      |+++|++.|++++|.+++++|+++||..+|++|+.+|+.+|+.+.|+.+++++++++|+++..|..|+++|++.|+|++|
T Consensus       631 lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a  710 (857)
T PLN03077        631 VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV  710 (857)
T ss_pred             HHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCccccchhh----hhhhh
Q 004369          611 AVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEE----SASVY  686 (758)
Q Consensus       611 ~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~----~~~~~  686 (758)
                      .++++.|+++|++|+||+|||++++++|.|.+||.+||+.++||.+|++|..+|++.||.||+..++++.+    ..+++
T Consensus       711 ~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~  790 (857)
T PLN03077        711 ARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCG  790 (857)
T ss_pred             HHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999998886543    77899


Q ss_pred             hhHHHHHHHcccCCCCCCcEEEEeccccCCchhHHHHHHhhhcCCeEEEecCCccccccCccccccc
Q 004369          687 HSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRD  753 (758)
Q Consensus       687 ~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~cs~~~  753 (758)
                      ||||||+|||||+||+|.||||+||||||+|||+++||||++++|||||||.+|||||+||+|||+|
T Consensus       791 hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d  857 (857)
T PLN03077        791 HSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD  857 (857)
T ss_pred             ccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.5e-123  Score=1061.13  Aligned_cols=608  Identities=36%  Similarity=0.621  Sum_probs=599.8

Q ss_pred             CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcC-CCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 004369          137 RINVVSWTSLISGYVQNSQPELAIHVFLDMLEAG-NYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNS  215 (758)
Q Consensus       137 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  215 (758)
                      .++.++|+.+|.+|++.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.+.++|..|++.|+.||..++|.
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~  163 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR  163 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            4577899999999999999999999999998765 789999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHH
Q 004369          216 LCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVG  295 (758)
Q Consensus       216 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  295 (758)
                      |+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.+..+.+
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHH
Q 004369          296 AQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSI  375 (758)
Q Consensus       296 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l  375 (758)
                      .++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++           +|+.++|+++
T Consensus       244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~-----------~g~~~eA~~l  312 (697)
T PLN03081        244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL-----------HGYSEEALCL  312 (697)
T ss_pred             HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHh-----------CCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999           9999999999


Q ss_pred             HHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChh
Q 004369          376 FSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLI  455 (758)
Q Consensus       376 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~  455 (758)
                      |++|.+.|+.||..||++++.+|++.|+++.|.++|..|.+.|+.+|..++++|+++|+|+|++++|.++|++|.++|++
T Consensus       313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~  392 (697)
T PLN03081        313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI  392 (697)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 004369          456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMF  535 (758)
Q Consensus       456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  535 (758)
                      +||+||.+|+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|
T Consensus       393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l  472 (697)
T PLN03081        393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL  472 (697)
T ss_pred             eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998889999999999999999


Q ss_pred             HHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHH
Q 004369          536 VRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKN  615 (758)
Q Consensus       536 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~  615 (758)
                      ++.|++++|.+++++|+..|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.++++
T Consensus       473 ~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~  552 (697)
T PLN03081        473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE  552 (697)
T ss_pred             HhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCccccchhh-----hhhhhhhHH
Q 004369          616 LTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEE-----SASVYHSEK  690 (758)
Q Consensus       616 ~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~-----~~~~~~~~~  690 (758)
                      .|+++|++|.||+|||++++++|.|.+||..||+..+||.++.++..+|++.||.||+.+++|+++     ..+++||||
T Consensus       553 ~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsek  632 (697)
T PLN03081        553 TLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEK  632 (697)
T ss_pred             HHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHH
Confidence            999999999999999999999999999999999999999999999999999999999999999987     678999999


Q ss_pred             HHHHHcccCCCCCCcEEEEeccccCCchhHHHHHHhhhcCCeEEEecCCccccccCccccccccC
Q 004369          691 LAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDFG  755 (758)
Q Consensus       691 ~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~cs~~~~~  755 (758)
                      ||+|||||++|||.||||+||||||+|||+|+||||++++|+|||||.+|||||+||+|||+|||
T Consensus       633 la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w  697 (697)
T PLN03081        633 LAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW  697 (697)
T ss_pred             HHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.7e-84  Score=758.27  Aligned_cols=670  Identities=25%  Similarity=0.410  Sum_probs=598.1

Q ss_pred             CCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHH
Q 004369           51 SEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQK  130 (758)
Q Consensus        51 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  130 (758)
                      ..|.+++|+.+|..|...|+.|+..+|..++.+|.+.+.++.|.++|..+.+.+..++..++|+|+++|+++|+++.|.+
T Consensus        63 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~  142 (857)
T PLN03077         63 SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWY  142 (857)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCCh
Q 004369          131 VFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDT  210 (758)
Q Consensus       131 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~  210 (758)
                      +|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..++++|..+++.|+.||.
T Consensus       143 ~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~  222 (857)
T PLN03077        143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV  222 (857)
T ss_pred             HHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccC
Q 004369          211 SVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTML  290 (758)
Q Consensus       211 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~  290 (758)
                      .++|+||++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|++.|
T Consensus       223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g  302 (857)
T PLN03077        223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG  302 (857)
T ss_pred             chHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChh
Q 004369          291 SLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGT  370 (758)
Q Consensus       291 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~  370 (758)
                      +.+.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++           .|+++
T Consensus       303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~-----------~g~~~  371 (857)
T PLN03077        303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK-----------NGLPD  371 (857)
T ss_pred             ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh-----------CCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999           99999


Q ss_pred             HHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC
Q 004369          371 EALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS  450 (758)
Q Consensus       371 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~  450 (758)
                      +|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.
T Consensus       372 ~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~  451 (857)
T PLN03077        372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP  451 (857)
T ss_pred             HHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHH
Q 004369          451 TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMC  530 (758)
Q Consensus       451 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~  530 (758)
                      ++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+.+|.+|++.|.++.+.+++..+.+ .|+.++..++++
T Consensus       452 ~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~na  529 (857)
T PLN03077        452 EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNA  529 (857)
T ss_pred             CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechH
Confidence            99999999999999999999999999999986 5999999999999999999999999999999998 599999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccC-CCCchhHHHHHHHhhhCCCchh
Q 004369          531 LIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK-PKDCESYAMLLDIFVSAGRWED  609 (758)
Q Consensus       531 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~  609 (758)
                      |+++|+++|++++|.++|+++  .||..+|++++.+|.++|+.++|.+++++|.+.+ .+|..+|..++.+|.+.|++++
T Consensus       530 Li~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e  607 (857)
T PLN03077        530 LLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ  607 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence            999999999999999999998  7899999999999999999999999999999865 3357899999999999999999


Q ss_pred             HHHHHHHhh-hCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCccccchhhhhhhhh-
Q 004369          610 VAVVKNLTR-EEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEESASVYH-  687 (758)
Q Consensus       610 a~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~~~~~~~-  687 (758)
                      |.++++.|. +.|+.+... .+..+   +..+    ...+..++    ..+++++   ....||..++-.-+. ....| 
T Consensus       608 a~~~f~~M~~~~gi~P~~~-~y~~l---v~~l----~r~G~~~e----A~~~~~~---m~~~pd~~~~~aLl~-ac~~~~  671 (857)
T PLN03077        608 GLEYFHSMEEKYSITPNLK-HYACV---VDLL----GRAGKLTE----AYNFINK---MPITPDPAVWGALLN-ACRIHR  671 (857)
T ss_pred             HHHHHHHHHHHhCCCCchH-HHHHH---HHHH----HhCCCHHH----HHHHHHH---CCCCCCHHHHHHHHH-HHHHcC
Confidence            999999998 556643321 00000   0001    11122222    2344444   468888754332222 11111 


Q ss_pred             -h---HHHH-HHHcccCCCCCCcEEEEeccccCCchhHHHHHHhhhcCCeEE-------EecCCccccccCccccc
Q 004369          688 -S---EKLA-IAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREII-------VRDSKRLHKFVNGHCTC  751 (758)
Q Consensus       688 -~---~~~a-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~h~~~~g~cs~  751 (758)
                       -   |+.| ..+.+.+...+.-+.+..-....|+..++.+....|..+.+-       +--.+..|-|..|.-+-
T Consensus       672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h  747 (857)
T PLN03077        672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESH  747 (857)
T ss_pred             ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCC
Confidence             1   2222 334555555554443444467889999999999887766321       11135788887776543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=5.3e-69  Score=613.16  Aligned_cols=458  Identities=24%  Similarity=0.410  Sum_probs=442.9

Q ss_pred             CCCchhHHHHHHHHHHHcC-CCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHH
Q 004369           51 SEPVRSLGFQEALSVLTEG-PKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQ  129 (758)
Q Consensus        51 ~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~  129 (758)
                      ..|++++|+++|..|...+ ..||..+|+.++.+|++.++++.|.++|..|.+.|+.||..++|.|+++|+++|++++|.
T Consensus        99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~  178 (697)
T PLN03081         99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR  178 (697)
T ss_pred             cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence            3788999999999998765 689999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCC
Q 004369          130 KVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDD  209 (758)
Q Consensus       130 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~  209 (758)
                      ++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.++++|..+.+.|+.+|
T Consensus       179 ~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d  258 (697)
T PLN03081        179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD  258 (697)
T ss_pred             HHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHccc
Q 004369          210 TSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTM  289 (758)
Q Consensus       210 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~  289 (758)
                      ..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.
T Consensus       259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~  338 (697)
T PLN03081        259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL  338 (697)
T ss_pred             ceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCCh
Q 004369          290 LSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGG  369 (758)
Q Consensus       290 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~  369 (758)
                      |.++.|.++|..|.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++           .|+.
T Consensus       339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~-----------~G~~  407 (697)
T PLN03081        339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN-----------HGRG  407 (697)
T ss_pred             cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH-----------cCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999           9999


Q ss_pred             hHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHH-cCCCChHHHHhHHhhhHHhcCCHHHHHHHHHh
Q 004369          370 TEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLK-TGFLSDVVVGTALVNMYKKCGRIERASRVFVE  448 (758)
Q Consensus       370 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~  448 (758)
                      ++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++|++
T Consensus       408 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~  487 (697)
T PLN03081        408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR  487 (697)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999986 69999999999999999999999999999999


Q ss_pred             cC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCC
Q 004369          449 MS-TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIK  522 (758)
Q Consensus       449 ~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~  522 (758)
                      |. .|+..+|++|+.+|..+|+.+.|..+++++.+  +.|+ ..+|+.++..|++.|++++|.++++.|.+. |+.
T Consensus       488 ~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~  560 (697)
T PLN03081        488 APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLS  560 (697)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCc
Confidence            97 67999999999999999999999999999875  5665 668999999999999999999999999874 764

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=9.7e-67  Score=595.43  Aligned_cols=503  Identities=15%  Similarity=0.209  Sum_probs=455.9

Q ss_pred             CCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcch-----HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHH
Q 004369          106 HQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVS-----WTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGT  180 (758)
Q Consensus       106 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~  180 (758)
                      .++...+..+++.++++|++++|.++|++|++++...     ++.++.+|.+.|..++|+.+|+.|..    ||..||+.
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~  442 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM  442 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence            4567778888888899999999999999998766554     45566778899999999999998864    89999999


Q ss_pred             HHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccC----CCCcchHHHHHHHHhhCCC
Q 004369          181 ALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIR----EKNVMSWTTVIGACGENGE  256 (758)
Q Consensus       181 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~  256 (758)
                      +|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|.    .||.++||+||.+|++.|+
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~  522 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ  522 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence            999999999999999999999999999999999999999999999999999999998    4899999999999999999


Q ss_pred             hhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004369          257 AVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIK--LGYASNLRVRNSIMYLYLKCGLVDEAQKLF  334 (758)
Q Consensus       257 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  334 (758)
                      +++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..|.+  .|+.||..+|++|+++|+++|++++|.++|
T Consensus       523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf  602 (1060)
T PLN03218        523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY  602 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999976  678999999999999999999999999999


Q ss_pred             ccCCC----CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHH
Q 004369          335 DGMSH----VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQI  410 (758)
Q Consensus       335 ~~m~~----~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i  410 (758)
                      +.|.+    ++..+||++|.+|++           .|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++
T Consensus       603 ~~M~e~gi~p~~~tynsLI~ay~k-----------~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l  671 (1060)
T PLN03218        603 QMIHEYNIKGTPEVYTIAVNSCSQ-----------KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI  671 (1060)
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            99976    567899999999999           999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004369          411 HALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS----TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVR  486 (758)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  486 (758)
                      ++.|.+.|+.||..+|++||++|+++|++++|.++|++|.    .||+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus       672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~  751 (1060)
T PLN03218        672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC  751 (1060)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999995    689999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH----HcC-------------------CHHH
Q 004369          487 PNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFV----RLG-------------------CIEE  543 (758)
Q Consensus       487 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~  543 (758)
                      ||..||+.++.+|++.|++++|.++|+.|.+ .|+.||..+|++|++++.    +++                   ..++
T Consensus       752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~  830 (1060)
T PLN03218        752 PNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW  830 (1060)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence            9999999999999999999999999999988 499999999999997643    222                   3467


Q ss_pred             HHHHHHHc---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhcc-CCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          544 AFDFIKKM---DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKL-KPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       544 A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      |+.+|++|   ++.||..+|+.++.++.+.+..+.+..+++.+... .+.+..+|..|++.+.+.  .++|..+++.|.+
T Consensus       831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~  908 (1060)
T PLN03218        831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS  908 (1060)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence            99999999   99999999999998777888888888888776433 356778999999988432  3589999999999


Q ss_pred             CCCCCCC
Q 004369          620 EKLSETD  626 (758)
Q Consensus       620 ~~~~~~~  626 (758)
                      .|+.+..
T Consensus       909 ~Gi~p~~  915 (1060)
T PLN03218        909 LGVVPSV  915 (1060)
T ss_pred             cCCCCCc
Confidence            9986543

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.6e-65  Score=585.46  Aligned_cols=504  Identities=15%  Similarity=0.190  Sum_probs=477.5

Q ss_pred             CCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCC-CCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHH
Q 004369           70 PKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGS-HQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLIS  148 (758)
Q Consensus        70 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~  148 (758)
                      ..++...|..++..|.+.|+++.|.++++.|.+.|+ +++..+++.++..|.+.|.+++|.++|+.|+.||..+||.+|.
T Consensus       366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~  445 (1060)
T PLN03218        366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS  445 (1060)
T ss_pred             CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            455677899999999999999999999999999985 5788888999999999999999999999999999999999999


Q ss_pred             HHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHH
Q 004369          149 GYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNS  228 (758)
Q Consensus       149 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~  228 (758)
                      +|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++++.|.+.|+.||..+|+.||++|++.|++++
T Consensus       446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee  525 (1060)
T PLN03218        446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK  525 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCC----CCcchHHHHHHHHhhCCChhhHHHHHHHHHH--CCCCCChhhHHHHHHHHcccCChHHHHHHHHHH
Q 004369          229 AIKAFNRIRE----KNVMSWTTVIGACGENGEAVQGLRFFSKMLS--EGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLG  302 (758)
Q Consensus       229 A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  302 (758)
                      |.++|+.|.+    ||.++||.||.+|++.|++++|.++|.+|..  .|+.||..||++++.+|++.|+++.|.++|+.|
T Consensus       526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M  605 (1060)
T PLN03218        526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI  605 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999964    8999999999999999999999999999986  689999999999999999999999999999999


Q ss_pred             HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC----CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHH
Q 004369          303 IKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH----VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSK  378 (758)
Q Consensus       303 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~  378 (758)
                      .+.|+.|+..+||++|.+|++.|++++|.++|++|.+    ||..+|+++|.+|++           .|+.++|+++|++
T Consensus       606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k-----------~G~~eeA~~l~~e  674 (1060)
T PLN03218        606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH-----------AGDLDKAFEILQD  674 (1060)
T ss_pred             HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-----------CCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999975    899999999999999           9999999999999


Q ss_pred             hHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC----CCCh
Q 004369          379 LNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS----TRTL  454 (758)
Q Consensus       379 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~~  454 (758)
                      |.+.|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.||..+||+||++|++.|++++|.++|++|.    .||.
T Consensus       675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~  754 (1060)
T PLN03218        675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT  754 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999986    5799


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----c-------------------ccHHHHHHH
Q 004369          455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN----A-------------------GMVYEALGY  511 (758)
Q Consensus       455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a~~~  511 (758)
                      .+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+.++..|.+    .                   +..++|..+
T Consensus       755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~l  834 (1060)
T PLN03218        755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV  834 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHH
Confidence            99999999999999999999999999999999999999999976542    1                   124679999


Q ss_pred             HHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369          512 FEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM---DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK  587 (758)
Q Consensus       512 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  587 (758)
                      |++|.+. |+.||..+|+.++.++++.+..+.+..+++.|   +..|+..+|++|+.+|.+.  .++|..++++|.+.+
T Consensus       835 f~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G  910 (1060)
T PLN03218        835 YRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG  910 (1060)
T ss_pred             HHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence            9999985 99999999999999999999999999999998   5667889999999998433  468999999999865

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2.5e-32  Score=326.66  Aligned_cols=549  Identities=13%  Similarity=0.085  Sum_probs=376.6

Q ss_pred             CCCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHH
Q 004369           50 NSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQ  129 (758)
Q Consensus        50 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~  129 (758)
                      ...|++++|...|.+++...+. +...+..+...+...|+++.|...+..+.+.. +.+...++.+...|.+.|++++|.
T Consensus       306 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~  383 (899)
T TIGR02917       306 YQLGNLEQAYQYLNQILKYAPN-SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAA  383 (899)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3466777777777776655432 33445556666677777777777777776554 445666777777777778888888


Q ss_pred             HHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCC
Q 004369          130 KVFDNLPR---INVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQT  206 (758)
Q Consensus       130 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~  206 (758)
                      +.|+++.+   .+...|..+...+...|++++|++.|+.+.+.... +......++..+.+.|+.+.+..++..+.+. .
T Consensus       384 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~  461 (899)
T TIGR02917       384 EYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-Q  461 (899)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-C
Confidence            77776643   23445666666777777777777777777654322 2233444556667777777777777777654 3


Q ss_pred             CCChhHHHHHHHHHhhcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHH
Q 004369          207 EDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSIS  283 (758)
Q Consensus       207 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll  283 (758)
                      +.+..++..+...|...|++++|.+.|+++.+   .+...+..+...+...|++++|.+.|+++...+ +.+..++..+.
T Consensus       462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~  540 (899)
T TIGR02917       462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA  540 (899)
T ss_pred             CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            44566777788888888888888888877654   244566667777777888888888888877653 23455666777


Q ss_pred             HHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhh
Q 004369          284 SVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAK  360 (758)
Q Consensus       284 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~  360 (758)
                      ..+...|+.+.+..++..+.+.+ +.+...+..++..|.+.|++++|..+++.+..   .+...|..+...|.+      
T Consensus       541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------  613 (899)
T TIGR02917       541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA------  613 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------
Confidence            77777788888888887776654 44556677777778888888888887777653   345567777777777      


Q ss_pred             chhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHH
Q 004369          361 DDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIE  440 (758)
Q Consensus       361 ~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~  440 (758)
                           .|++++|+..|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+...+..++..+.+.|+++
T Consensus       614 -----~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  686 (899)
T TIGR02917       614 -----AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE  686 (899)
T ss_pred             -----cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence                 777777887777776642 2345566667777777777777777777776643 445667777777777777777


Q ss_pred             HHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369          441 RASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK  517 (758)
Q Consensus       441 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  517 (758)
                      +|.++++.+..   .+...|..+...+...|++++|++.|+++...  .|+..++..+..++.+.|++++|.+.++.+.+
T Consensus       687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  764 (899)
T TIGR02917       687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK  764 (899)
T ss_pred             HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77777777653   34456667777777777777777777777764  34445666666777777777777777777765


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHH
Q 004369          518 EYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYA  595 (758)
Q Consensus       518 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  595 (758)
                        ..+.+...+..+...|.+.|+.++|.+.|+++ ...| +..+++.+...+...|+ ++|+..+++++++.|+++..+.
T Consensus       765 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~  841 (899)
T TIGR02917       765 --THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD  841 (899)
T ss_pred             --hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence              23445666777777777777777777777776 3333 55667777777777777 6677777777777777777777


Q ss_pred             HHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369          596 MLLDIFVSAGRWEDVAVVKNLTREEKL  622 (758)
Q Consensus       596 ~l~~~~~~~g~~~~a~~~~~~m~~~~~  622 (758)
                      .++.+|...|++++|.++++.+.+.+.
T Consensus       842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       842 TLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            777777777777777777777766543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.3e-31  Score=320.37  Aligned_cols=554  Identities=11%  Similarity=0.023  Sum_probs=467.0

Q ss_pred             hhhhcCCCCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCC
Q 004369           44 LIQLNGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCG  123 (758)
Q Consensus        44 l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  123 (758)
                      +.+......|++++|+..|.++++.++.- ...+..+...+...|+++.|...+..+++.. +.+...+..+...+.+.|
T Consensus       266 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g  343 (899)
T TIGR02917       266 LKALVDFQKKNYEDARETLQDALKSAPEY-LPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLG  343 (899)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC
Confidence            33334445788889999888887765431 2233344455678899999999999988765 456677788888999999


Q ss_pred             ChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHH
Q 004369          124 NMEEAQKVFDNLPR---INVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAY  200 (758)
Q Consensus       124 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  200 (758)
                      ++++|...++.+..   .+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|+.+.|...+..
T Consensus       344 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  422 (899)
T TIGR02917       344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLET  422 (899)
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            99999999988754   355678889999999999999999999998753 22455667777788899999999999999


Q ss_pred             HHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChh
Q 004369          201 VVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEF  277 (758)
Q Consensus       201 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  277 (758)
                      +.+.... .......++..|.+.|++++|..+++.+..   .+...|+.+...+...|++++|.+.|+++.+.. +.+..
T Consensus       423 a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~  500 (899)
T TIGR02917       423 AAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFP  500 (899)
T ss_pred             HHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHH
Confidence            9886532 345566788899999999999999998875   356789999999999999999999999998753 23455


Q ss_pred             hHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhh
Q 004369          278 TLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQ  354 (758)
Q Consensus       278 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~  354 (758)
                      .+..+...+...|+++.|.+++..+.+.. +.+..++..+...|.+.|+.++|..+|+++..   .+...+..+...|..
T Consensus       501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  579 (899)
T TIGR02917       501 AAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG  579 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHH
Confidence            67778888899999999999999998876 56788899999999999999999999998854   345567788888888


Q ss_pred             hchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHH
Q 004369          355 MMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYK  434 (758)
Q Consensus       355 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~  434 (758)
                                 .|++++|+.+++++... .+.+..++..+..++...|+++.|...+..+.+.. +.+...+..+...|.
T Consensus       580 -----------~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  646 (899)
T TIGR02917       580 -----------KGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA  646 (899)
T ss_pred             -----------CCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence                       99999999999999875 35577889999999999999999999999998764 456778889999999


Q ss_pred             hcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHH
Q 004369          435 KCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGY  511 (758)
Q Consensus       435 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~  511 (758)
                      +.|++++|..+|+++.   +.+..+|..++..+...|++++|..+++.+.+.. .++...+..+...+...|++++|.+.
T Consensus       647 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~  725 (899)
T TIGR02917       647 VMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQA  725 (899)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999999876   3467899999999999999999999999999874 44677788888899999999999999


Q ss_pred             HHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          512 FEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       512 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      |+.+..   ..|+...+..++.++.+.|++++|.+.++++ ...| +..++..+...|...|+.++|...++++++..|+
T Consensus       726 ~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  802 (899)
T TIGR02917       726 YRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD  802 (899)
T ss_pred             HHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence            999976   3466678888999999999999999999998 4444 6788999999999999999999999999999999


Q ss_pred             CchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369          590 DCESYAMLLDIFVSAGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       590 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  621 (758)
                      ++..+..++++|...|+ ++|..+++.+.+..
T Consensus       803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~  833 (899)
T TIGR02917       803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLA  833 (899)
T ss_pred             CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence            99999999999999999 88999999887643

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=99.97  E-value=6.3e-32  Score=226.08  Aligned_cols=101  Identities=53%  Similarity=0.822  Sum_probs=92.2

Q ss_pred             ceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCccccchhh-------------hhhhhhhHHHHH
Q 004369          627 DWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEE-------------SASVYHSEKLAI  693 (758)
Q Consensus       627 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~-------------~~~~~~~~~~a~  693 (758)
                      |+||+++    |.|++||.+||+.        ++..++...||.|++..+.|+++             ..+++||||||+
T Consensus         2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi   69 (116)
T PF14432_consen    2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI   69 (116)
T ss_pred             CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence            7899886    9999999999988        45667778899999988888766             267899999999


Q ss_pred             HHcccCCCCCCcEEEEecc-ccCCchhHHHHHHhhhcCCeEEEecCCcccccc
Q 004369          694 AFGLLNTPIVSPILVVKST-TMCRDCHNFIKIITSLTAREIIVRDSKRLHKFV  745 (758)
Q Consensus       694 ~~~~~~~~~~~~~~~~~n~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~  745 (758)
                      ||||+++      ||+||+ |||+|||+++|+||++++|+|||||.+|||||+
T Consensus        70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk  116 (116)
T PF14432_consen   70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK  116 (116)
T ss_pred             Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence            9999998      899999 999999999999999999999999999999997

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.95  E-value=5.2e-23  Score=246.84  Aligned_cols=412  Identities=10%  Similarity=0.028  Sum_probs=313.7

Q ss_pred             HHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC--CCc---chHHHH----------
Q 004369          183 TACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE--KNV---MSWTTV----------  247 (758)
Q Consensus       183 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~---~~~~~l----------  247 (758)
                      ..+...|++++|...++.+++.. +.+..++..|...|.+.|++++|...|++..+  |+.   ..|..+          
T Consensus       277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            34556788889998888888764 23667788888888899999999998887765  322   123222          


Q ss_pred             --HHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 004369          248 --IGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCG  325 (758)
Q Consensus       248 --i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  325 (758)
                        ...+.+.|++++|+..|++..+.. +.+...+..+...+...|+++.|.+.+..+++.. +.+...+..+...|. .+
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~  432 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ  432 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence              235667889999999999888753 2344556667778888899999999998888764 344556666777774 45


Q ss_pred             CHHHHHHHHccCCCCCe------------eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCC-CHHHHH
Q 004369          326 LVDEAQKLFDGMSHVNL------------VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP-DLYTFS  392 (758)
Q Consensus       326 ~~~~A~~~~~~m~~~~~------------~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~  392 (758)
                      +.++|..+++.+.....            ..+..+...+..           .|++++|++.|++..+.  .| +...+.
T Consensus       433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~-----------~g~~~eA~~~~~~Al~~--~P~~~~~~~  499 (1157)
T PRK11447        433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN-----------QGKWAQAAELQRQRLAL--DPGSVWLTY  499 (1157)
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----------CCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence            77888888877654211            122233444555           99999999999999875  45 455677


Q ss_pred             HHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC----Ch---------hHHHH
Q 004369          393 SILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR----TL---------ISWTS  459 (758)
Q Consensus       393 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~  459 (758)
                      .+...+.+.|+.++|...++.+.+.. +.+...+..+...+.+.|+.++|...++.+...    +.         ..+..
T Consensus       500 ~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~  578 (1157)
T PRK11447        500 RLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE  578 (1157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence            78888999999999999999988754 334555555666678899999999999988632    11         11234


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC
Q 004369          460 MITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG  539 (758)
Q Consensus       460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  539 (758)
                      +...+...|+.++|+.+++.     .+++...+..+...+.+.|++++|...|+.+.+.  -+.+...+..++.+|...|
T Consensus       579 ~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g  651 (1157)
T PRK11447        579 TANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQG  651 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC
Confidence            56778899999999999882     2445566777888899999999999999999863  2335788899999999999


Q ss_pred             CHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc------hhHHHHHHHhhhCCCchhHH
Q 004369          540 CIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC------ESYAMLLDIFVSAGRWEDVA  611 (758)
Q Consensus       540 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~  611 (758)
                      ++++|++.+++. ...| +..++..+..++...|++++|.+.++++++..|+++      ..+..++.++...|++++|.
T Consensus       652 ~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~  731 (1157)
T PRK11447        652 DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL  731 (1157)
T ss_pred             CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999988 5556 456678888899999999999999999999876554      36667899999999999999


Q ss_pred             HHHHHhhh
Q 004369          612 VVKNLTRE  619 (758)
Q Consensus       612 ~~~~~m~~  619 (758)
                      ..++....
T Consensus       732 ~~y~~Al~  739 (1157)
T PRK11447        732 ETYKDAMV  739 (1157)
T ss_pred             HHHHHHHh
Confidence            99888753

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.95  E-value=2.7e-23  Score=249.20  Aligned_cols=516  Identities=11%  Similarity=0.025  Sum_probs=352.6

Q ss_pred             hhcCCCcHHHHHHHHHHHHhCCCCchhHHHHH-HHHhhcCCChHHHHHHHccCCC--C-CcchHHHHHHHHHhCCCchHH
Q 004369           84 CVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFL-VNVYGKCGNMEEAQKVFDNLPR--I-NVVSWTSLISGYVQNSQPELA  159 (758)
Q Consensus        84 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A  159 (758)
                      +...|++++|.+.++.+++.. +++......+ .......|+.++|++.|+++.+  | +...+..+...+...|+.++|
T Consensus       122 l~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eA  200 (1157)
T PRK11447        122 LATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEG  200 (1157)
T ss_pred             HHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHH
Confidence            455566666666666655433 2222111111 1111233566666666665543  2 233455555556666666666


Q ss_pred             HHHHHHHHHcCCC----------------CChh---hHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 004369          160 IHVFLDMLEAGNY----------------PTNV---TLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLY  220 (758)
Q Consensus       160 ~~~~~~m~~~g~~----------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y  220 (758)
                      +..|+++.+....                ++..   .+...+..+........+...+....+....|+. ....+...+
T Consensus       201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~-~~~~~G~~~  279 (1157)
T PRK11447        201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF-RARAQGLAA  279 (1157)
T ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch-HHHHHHHHH
Confidence            6666665432100                0000   0111111111111222333333333222222221 112335567


Q ss_pred             hhcCChHHHHHHHhccCC--C-CcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCC-ChhhH------------HHHHH
Q 004369          221 STCGSLNSAIKAFNRIRE--K-NVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQP-NEFTL------------TSISS  284 (758)
Q Consensus       221 ~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~------------~~ll~  284 (758)
                      ...|++++|...|++..+  | |...+..+...|.+.|++++|+..|++..+..... +...+            .....
T Consensus       280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~  359 (1157)
T PRK11447        280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD  359 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence            788999999999998865  3 56788899999999999999999999988754221 11111            11234


Q ss_pred             HHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC--C-CeeechhHHHHHhhhchhhhc
Q 004369          285 VCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH--V-NLVTWNAMIAGHAQMMDLAKD  361 (758)
Q Consensus       285 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~~  361 (758)
                      .+.+.|+++.|...+..+++.. +.+...+..+..+|.+.|++++|.+.|++..+  | +...+..+...|.        
T Consensus       360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~--------  430 (1157)
T PRK11447        360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR--------  430 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------
Confidence            5678899999999999999875 45667788899999999999999999999865  2 2334444555543        


Q ss_pred             hhhcCCChhHHHHHHHHhHhCCCCC--------CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhH
Q 004369          362 DLSAHNGGTEALSIFSKLNSSGMKP--------DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMY  433 (758)
Q Consensus       362 ~l~~~g~~~~A~~l~~~m~~~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y  433 (758)
                          .++.++|+.+++.+.......        ....+......+...|++++|.+.++.+++.. +.+..++..+...|
T Consensus       431 ----~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~  505 (1157)
T PRK11447        431 ----QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL  505 (1157)
T ss_pred             ----hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence                456799998887764321100        11234445667788999999999999998864 44677888899999


Q ss_pred             HhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHhc
Q 004369          434 KKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV---------TFVGALAACSN  501 (758)
Q Consensus       434 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~  501 (758)
                      .+.|++++|...|+++.   ..+...+..+...+...|+.++|+..++++......++..         .+..+...+..
T Consensus       506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~  585 (1157)
T PRK11447        506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD  585 (1157)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence            99999999999999875   3355566666666788999999999998865432222221         23345667888


Q ss_pred             cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 004369          502 AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYA  579 (758)
Q Consensus       502 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~  579 (758)
                      .|+.++|..+++.      .+++...+..+.+.|.+.|++++|++.|++. ...| +...+..++..+...|++++|+..
T Consensus       586 ~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~  659 (1157)
T PRK11447        586 SGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ  659 (1157)
T ss_pred             CCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999998872      2345567788999999999999999999998 6667 678899999999999999999999


Q ss_pred             HHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369          580 AEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       580 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  621 (758)
                      ++++++..|+++..+..++.++...|++++|.++++.+.+..
T Consensus       660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence            999999999999999999999999999999999999987643

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.93  E-value=3.9e-20  Score=211.75  Aligned_cols=558  Identities=11%  Similarity=-0.021  Sum_probs=386.8

Q ss_pred             hhhhhcCCCCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 004369           43 KLIQLNGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKC  122 (758)
Q Consensus        43 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~  122 (758)
                      .+.+......|++++|++.|++.++..|.- ..++..+...+...|+.++|....+..++.. +.|...+..+. .+   
T Consensus        48 f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La-~i---  121 (987)
T PRK09782         48 LDKALKAQKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLA-AI---  121 (987)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHH-Hh---
Confidence            334444455799999999999999887763 6778899999999999999999999998875 45555555542 22   


Q ss_pred             CChHHHHHHHccCCC--CC-cchHHHHHHH--------HHhCCCchHHHHHHHHHHHcCCCCChhhHHHH-HHHhcccCC
Q 004369          123 GNMEEAQKVFDNLPR--IN-VVSWTSLISG--------YVQNSQPELAIHVFLDMLEAGNYPTNVTLGTA-LTACSSLES  190 (758)
Q Consensus       123 g~~~~A~~~f~~~~~--~~-~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~  190 (758)
                      ++.++|..+++++..  |+ ...+..+...        |.+.   ++|.+.++ .......|+..+.... .+.+...++
T Consensus       122 ~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~d  197 (987)
T PRK09782        122 PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQ  197 (987)
T ss_pred             ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhC
Confidence            889999999999863  32 3334444333        6655   44555554 3333344455555555 888999999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhHHHHHHHHHhh-cCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHH
Q 004369          191 IRLGKQIHAYVVKYQTEDDTSVGNSLCSLYST-CGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLS  269 (758)
Q Consensus       191 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  269 (758)
                      ++.+..++..+.+.+.. +......|...|.. .++ ++|..+++...+.|...+..+...|.+.|+.++|.++++++..
T Consensus       198 w~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~  275 (987)
T PRK09782        198 WSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKP  275 (987)
T ss_pred             HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence            99999999999998743 35556667778887 477 8888888765556888999999999999999999999998864


Q ss_pred             CCCC-CChhhHHHH------------------------------HHHHcccCChHHHHHHHH------------------
Q 004369          270 EGIQ-PNEFTLTSI------------------------------SSVCGTMLSLRVGAQVHS------------------  300 (758)
Q Consensus       270 ~g~~-p~~~t~~~l------------------------------l~~~~~~~~~~~a~~~~~------------------  300 (758)
                      .-.. |+..++.-+                              +.-+.+.+.++.++++..                  
T Consensus       276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  355 (987)
T PRK09782        276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVAT  355 (987)
T ss_pred             cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcccc
Confidence            3221 332222222                              222333344443333321                  


Q ss_pred             -----------HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCee----echhHHHHHhhhchhhh-c-
Q 004369          301 -----------LGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH--VNLV----TWNAMIAGHAQMMDLAK-D-  361 (758)
Q Consensus       301 -----------~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~----~~~~li~~~~~~~~~~~-~-  361 (758)
                                 .+.+. .+.+....--+.-...+.|+.++|..+|+..-.  ++..    .-+-++..|........ . 
T Consensus       356 ~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  434 (987)
T PRK09782        356 RNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK  434 (987)
T ss_pred             CchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence                       11111 011222223333344567888999999888755  2221    22244555555211000 0 


Q ss_pred             --hhh----------cCCChhHHHHHHHHhHh-CCCCC---CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHH
Q 004369          362 --DLS----------AHNGGTEALSIFSKLNS-SGMKP---DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVV  425 (758)
Q Consensus       362 --~l~----------~~g~~~~A~~l~~~m~~-~g~~p---~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~  425 (758)
                        .|.          -.|+..++...+..... .+..|   +...+..+..++.. ++.++|...+.......  |+...
T Consensus       435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~  511 (987)
T PRK09782        435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQ  511 (987)
T ss_pred             HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHH
Confidence              000          02222222222222222 12223   45555555555555 78888999777776653  45444


Q ss_pred             HhHHhhhHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc
Q 004369          426 GTALVNMYKKCGRIERASRVFVEMST--RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ-VTFVGALAACSNA  502 (758)
Q Consensus       426 ~~~Li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~  502 (758)
                      ...+...+...|++++|...|+++..  ++...+..+...+.+.|+.++|...+++..+..  |+. ..+..+...+...
T Consensus       512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~  589 (987)
T PRK09782        512 HRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIP  589 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhC
Confidence            44455556789999999999998763  445567777888999999999999999998853  543 3333444455567


Q ss_pred             ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHH
Q 004369          503 GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAA  580 (758)
Q Consensus       503 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~  580 (758)
                      |++++|...+++..+   +.|+...|..+..++.+.|+.++|+..+++. ...| +...++.+..++...|+.++|+..+
T Consensus       590 Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l  666 (987)
T PRK09782        590 GQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML  666 (987)
T ss_pred             CCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999975   4578889999999999999999999999998 7777 5677888999999999999999999


Q ss_pred             HHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369          581 EQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       581 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  621 (758)
                      +++++++|+++..+..++.+|...|++++|...++...+..
T Consensus       667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999987643

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.90  E-value=1.7e-18  Score=198.39  Aligned_cols=567  Identities=8%  Similarity=-0.033  Sum_probs=393.1

Q ss_pred             cchHHhhhhcCCccccccchhhhhhhcCCCCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHH
Q 004369           22 SSSLATLKDKNHTVSYQRSGSKLIQLNGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIV  101 (758)
Q Consensus        22 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  101 (758)
                      ..++..+......-|.+......+...-...|+.++|...+++.++..+  +...|..++...   ++.++|..+++.+.
T Consensus        61 ~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~n~~~~~~La~i---~~~~kA~~~ye~l~  135 (987)
T PRK09782         61 ATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--GDARLERSLAAI---PVEVKSVTTVEELL  135 (987)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHHHHHHHh---ccChhHHHHHHHHH
Confidence            3444444444444444443344444444568999999999999987654  444444444333   88899999999999


Q ss_pred             HhCCCCchhHHHHHHHH--------hhcCCChHHHHHHHccCCC-CCcchHHH-HHHHHHhCCCchHHHHHHHHHHHcCC
Q 004369          102 KTGSHQDFFVMTFLVNV--------YGKCGNMEEAQKVFDNLPR-INVVSWTS-LISGYVQNSQPELAIHVFLDMLEAGN  171 (758)
Q Consensus       102 ~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~f~~~~~-~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~  171 (758)
                      +.. +.+..++..+...        |.+.+...++++ .+.... ++...... +...|.+.|++++|++++.++.+.+.
T Consensus       136 ~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p  213 (987)
T PRK09782        136 AQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT  213 (987)
T ss_pred             HhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence            875 4555666666665        777777777776 333222 23333344 48899999999999999999999864


Q ss_pred             CCChhhHHHHHHHhcc-cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC-----CCcchHH
Q 004369          172 YPTNVTLGTALTACSS-LESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE-----KNVMSWT  245 (758)
Q Consensus       172 ~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~  245 (758)
                      . +..-...+-.++.. .++ +.+..++..    .+..++.+...+.+.|.+.|+.++|.+++++++.     |+..+|-
T Consensus       214 l-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~  287 (987)
T PRK09782        214 L-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL  287 (987)
T ss_pred             C-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence            3 33334555556666 355 666666442    3446888999999999999999999999998863     1111111


Q ss_pred             ------------------------------HHHHHHhhCCChhhHHHHHH-----------------------------H
Q 004369          246 ------------------------------TVIGACGENGEAVQGLRFFS-----------------------------K  266 (758)
Q Consensus       246 ------------------------------~li~~~~~~g~~~~A~~l~~-----------------------------~  266 (758)
                                                    .++..+.+.++++-+.++..                             .
T Consensus       288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  367 (987)
T PRK09782        288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL  367 (987)
T ss_pred             HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence                                          11334445555554444321                             1


Q ss_pred             HHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCC---HHHHHHHHccCCC--
Q 004369          267 MLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKL-G-YASNLRVRNSIMYLYLKCGL---VDEAQKLFDGMSH--  339 (758)
Q Consensus       267 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~--  339 (758)
                      |.+.. +-+....-.+.-.....|+.++|.+++...... + -..+....+-|+..|.+.+.   ..++..+-..+..  
T Consensus       368 ~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~  446 (987)
T PRK09782        368 LYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE  446 (987)
T ss_pred             HHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence            11110 001111212222234567888899998887662 1 12245566688899998877   3344333221211  


Q ss_pred             -------------------------C---CeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHH
Q 004369          340 -------------------------V---NLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTF  391 (758)
Q Consensus       340 -------------------------~---~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~  391 (758)
                                               |   +...|..+...+.            .++.++|+..+.+....  .|+....
T Consensus       447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~------------~~~~~eAi~a~~~Al~~--~Pd~~~~  512 (987)
T PRK09782        447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR------------DTLPGVALYAWLQAEQR--QPDAWQH  512 (987)
T ss_pred             hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH------------hCCcHHHHHHHHHHHHh--CCchHHH
Confidence                                     1   2223333333332            46888899988887764  4776655


Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHH---HHHHHHhcC
Q 004369          392 SSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTS---MITGFANHS  468 (758)
Q Consensus       392 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g  468 (758)
                      ..+..++...|++++|...+..+...  +|+...+..+...+.+.|++++|...|++....++..++.   +.......|
T Consensus       513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G  590 (987)
T PRK09782        513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG  590 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence            45555667899999999999987654  3444455677888899999999999999877554333333   333444559


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004369          469 LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFI  548 (758)
Q Consensus       469 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  548 (758)
                      ++++|+..|++..+  +.|+...+..+..++.+.|++++|...++...+.  -+.+...++.+...+...|++++|++.+
T Consensus       591 r~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l  666 (987)
T PRK09782        591 QPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREML  666 (987)
T ss_pred             CHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999998  5678888999999999999999999999999762  2334678889999999999999999999


Q ss_pred             HHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369          549 KKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL  622 (758)
Q Consensus       549 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  622 (758)
                      ++. ...| +...+..+..++...|++++|+..++++++++|++..+....+++..+..+++.|.+-++..-.-.+
T Consensus       667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~  742 (987)
T PRK09782        667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF  742 (987)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            998 6677 6778999999999999999999999999999999999999999999999999999987777655443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=2.8e-19  Score=181.11  Aligned_cols=442  Identities=13%  Similarity=0.114  Sum_probs=330.8

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhc
Q 004369          144 TSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTC  223 (758)
Q Consensus       144 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~  223 (758)
                      ..|..-.-+.|++++|++.-...-+++ ..+..+...+-..+.+..+++...+--...++.. ..-..+|+.+.+.+-..
T Consensus        52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker  129 (966)
T KOG4626|consen   52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER  129 (966)
T ss_pred             HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence            344455567788888877665443332 1122222222223444455555444433333322 23356788888899999


Q ss_pred             CChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHH-HHHcccCChHHHHHHH
Q 004369          224 GSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSIS-SVCGTMLSLRVGAQVH  299 (758)
Q Consensus       224 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~  299 (758)
                      |++++|..+++.+.+   ..+..|..+..++...|+.+.|.+.|.+.++  +.|+.+...+-+ ......|++++|..-+
T Consensus       130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cY  207 (966)
T KOG4626|consen  130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACY  207 (966)
T ss_pred             chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHH
Confidence            999999999988876   3566888999999999999999999988877  457665544432 2334467888888888


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCe---eechhHHHHHhhhchhhhchhhcCCChhHHHHHH
Q 004369          300 SLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNL---VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIF  376 (758)
Q Consensus       300 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~  376 (758)
                      -++++.. +.-..+|+.|...+-..|++..|+..|++...-|+   ..|-.+-..|..           .+.+++|+..+
T Consensus       208 lkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke-----------~~~~d~Avs~Y  275 (966)
T KOG4626|consen  208 LKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE-----------ARIFDRAVSCY  275 (966)
T ss_pred             HHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH-----------HhcchHHHHHH
Confidence            8777654 33456788888888889999999999988876443   234444444544           88888888888


Q ss_pred             HHhHhCCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CC
Q 004369          377 SKLNSSGMKPD-LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TR  452 (758)
Q Consensus       377 ~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~  452 (758)
                      .+....  .|+ .+.+..+...|-..|.++.|..-++..++.. +--...|+.|..++-..|++.+|.+.+.+..   ..
T Consensus       276 ~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~  352 (966)
T KOG4626|consen  276 LRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN  352 (966)
T ss_pred             HHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence            777653  554 4566666667778899999999998888753 2236788999999999999999999998866   33


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHH
Q 004369          453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMC  530 (758)
Q Consensus       453 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~  530 (758)
                      ...+.+.|...|...|..++|..+|....+  +.|. ...++.|...|-+.|++++|...+++..   .+.|+ ...|+.
T Consensus       353 hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~N  427 (966)
T KOG4626|consen  353 HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSN  427 (966)
T ss_pred             cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHh
Confidence            456788899999999999999999998887  6777 5678888888999999999999998885   57787 678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCch
Q 004369          531 LIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWE  608 (758)
Q Consensus       531 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  608 (758)
                      |...|-..|+.+.|...+.+. .+.|. ....+.|...+...|+..+|+..++.+++++|+-+.+|..|+.+.--...|.
T Consensus       428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~  507 (966)
T KOG4626|consen  428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWT  507 (966)
T ss_pred             cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhccc
Confidence            999999999999999999887 77774 5678899999999999999999999999999999999998888876666776


Q ss_pred             h
Q 004369          609 D  609 (758)
Q Consensus       609 ~  609 (758)
                      +
T Consensus       508 D  508 (966)
T KOG4626|consen  508 D  508 (966)
T ss_pred             c
Confidence            6

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.86  E-value=1e-18  Score=176.98  Aligned_cols=415  Identities=12%  Similarity=0.131  Sum_probs=333.3

Q ss_pred             HHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCC---CcchHHHHHHHHhhCCChhh
Q 004369          183 TACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREK---NVMSWTTVIGACGENGEAVQ  259 (758)
Q Consensus       183 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~  259 (758)
                      .-..+.|++.+|++.-..+-+.. +.+....-.+-..|.+..+++.....-....+.   -..+|..+...+-..|+.++
T Consensus        56 h~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~  134 (966)
T KOG4626|consen   56 HRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQD  134 (966)
T ss_pred             HHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHH
Confidence            33445677777776544443322 112222223335666777766654433332222   34588899999999999999


Q ss_pred             HHHHHHHHHHCCCCC-ChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHccC
Q 004369          260 GLRFFSKMLSEGIQP-NEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASN-LRVRNSIMYLYLKCGLVDEAQKLFDGM  337 (758)
Q Consensus       260 A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m  337 (758)
                      |+.+++.|.+.  +| ....|..+..++...|+.+.|.+.|...++..  |+ ..+.+.+....-..|++++|...+.+.
T Consensus       135 al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkA  210 (966)
T KOG4626|consen  135 ALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKA  210 (966)
T ss_pred             HHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence            99999999984  45 45678889999999999999999999988764  43 344455666667789999999888776


Q ss_pred             CC--CC-eeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCH-HHHHHHHHHHhcccchHHHHHHHHH
Q 004369          338 SH--VN-LVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDL-YTFSSILTICSRLVALEQGEQIHAL  413 (758)
Q Consensus       338 ~~--~~-~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~  413 (758)
                      .+  |. .+.|+.+-..+..           +|+...|+..|++....  .|+- ..|-.+-..+...+.++.|...+..
T Consensus       211 i~~qp~fAiawsnLg~~f~~-----------~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r  277 (966)
T KOG4626|consen  211 IETQPCFAIAWSNLGCVFNA-----------QGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLR  277 (966)
T ss_pred             HhhCCceeeeehhcchHHhh-----------cchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence            54  43 4789999888888           99999999999998763  5543 4677777888888888888888877


Q ss_pred             HHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC--C-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H
Q 004369          414 TLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR--T-LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-Q  489 (758)
Q Consensus       414 ~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~  489 (758)
                      +.... +....++..|...|-..|.++-|.+.+++..+.  + ...||.|..++-..|+..+|...|.+.+.  +.|+ .
T Consensus       278 Al~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~ha  354 (966)
T KOG4626|consen  278 ALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHA  354 (966)
T ss_pred             HHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccH
Confidence            76643 345778888999999999999999999997743  3 46899999999999999999999999988  5777 5


Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHH
Q 004369          490 VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAG  566 (758)
Q Consensus       490 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~  566 (758)
                      ...+.|...+...|.+++|..+|....+   +.|. ....+.|...|-..|++++|+..+++. .++|+ ...++.+...
T Consensus       355 dam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt  431 (966)
T KOG4626|consen  355 DAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNT  431 (966)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence            6889999999999999999999998854   5566 567899999999999999999999998 89996 5679999999


Q ss_pred             HHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369          567 CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       567 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  621 (758)
                      |...|+.+.|.+.+.+++..+|.-..++..|+.+|-..|+..+|..-++...+..
T Consensus       432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk  486 (966)
T KOG4626|consen  432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK  486 (966)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence            9999999999999999999999999999999999999999999999999887643

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.83  E-value=8.7e-17  Score=181.48  Aligned_cols=249  Identities=11%  Similarity=0.049  Sum_probs=205.7

Q ss_pred             CCChhHHHHHHHHhHhCC-CCC-CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHH
Q 004369          366 HNGGTEALSIFSKLNSSG-MKP-DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERAS  443 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g-~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~  443 (758)
                      .+.+++|++.|++....+ ..| +...+..+...+...|++++|...+...++.. +.+...+..+...|...|++++|.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~  385 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE  385 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence            578999999999998764 344 34566677777788999999999999998763 334667888999999999999999


Q ss_pred             HHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhc
Q 004369          444 RVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEY  519 (758)
Q Consensus       444 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~  519 (758)
                      ..|++..   ..+...|..+...+...|++++|+..|++..+.  .|+ ...+..+..++.+.|++++|...|+...+. 
T Consensus       386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-  462 (615)
T TIGR00990       386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-  462 (615)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence            9999865   346788999999999999999999999999984  555 566777888899999999999999998763 


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH-HH-------HHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369          520 KIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNE-VI-------WSVFIAGCRRHGNMELGFYAAEQLLKLKPKD  590 (758)
Q Consensus       520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~-------~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  590 (758)
                       .+.+...|+.+..+|...|++++|++.|++. ...|+. .+       ++..+..+...|++++|...++++++++|++
T Consensus       463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~  541 (615)
T TIGR00990       463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC  541 (615)
T ss_pred             -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence             3344788999999999999999999999997 444431 11       2222223344699999999999999999999


Q ss_pred             chhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          591 CESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       591 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ...+..|+.+|...|++++|.+.++...+
T Consensus       542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~  570 (615)
T TIGR00990       542 DIAVATMAQLLLQQGDVDEALKLFERAAE  570 (615)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            99999999999999999999999998875

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.82  E-value=5.1e-18  Score=181.75  Aligned_cols=291  Identities=15%  Similarity=0.128  Sum_probs=216.7

Q ss_pred             HHHhcCCHHHHHHHHccCCCC---CeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCC---HHHHHH
Q 004369          320 LYLKCGLVDEAQKLFDGMSHV---NLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPD---LYTFSS  393 (758)
Q Consensus       320 ~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~  393 (758)
                      .+...|++++|...|.++.+.   +..+|..+...+.+           .|++++|+.+++.+...+..++   ...+..
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----------~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~  112 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRR-----------RGEVDRAIRIHQNLLSRPDLTREQRLLALQE  112 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-----------cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            345566677777777766542   22345556666666           7777777777777766432221   234566


Q ss_pred             HHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCC--------hhHHHHHHHHHH
Q 004369          394 ILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRT--------LISWTSMITGFA  465 (758)
Q Consensus       394 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~  465 (758)
                      +...+...|+++.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+        ...|..+...+.
T Consensus       113 La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  191 (389)
T PRK11788        113 LGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL  191 (389)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence            6677777777777877777776642 4456777788888888888888888888775321        124566777888


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC--HHHHHHHHHHHHHcCCHH
Q 004369          466 NHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV--MDHYMCLIDMFVRLGCIE  542 (758)
Q Consensus       466 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~  542 (758)
                      +.|++++|+..|+++.+.  .|+ ...+..+...+.+.|++++|.++++++.+.   .|+  ...++.++.+|.+.|+++
T Consensus       192 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~  266 (389)
T PRK11788        192 ARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEA  266 (389)
T ss_pred             hCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHH
Confidence            899999999999999874  344 556777778889999999999999998763   233  456788999999999999


Q ss_pred             HHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh---CCCchhHHHHHHHhh
Q 004369          543 EAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS---AGRWEDVAVVKNLTR  618 (758)
Q Consensus       543 ~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~  618 (758)
                      +|...++++ ...|+...+..++..+.+.|++++|...++++++..|++. .+..+...+..   .|+.+++..+++.|.
T Consensus       267 ~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~  345 (389)
T PRK11788        267 EGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLV  345 (389)
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence            999999998 6678777778899999999999999999999999999875 45555555443   568999999999999


Q ss_pred             hCCCCCCCce
Q 004369          619 EEKLSETDDW  628 (758)
Q Consensus       619 ~~~~~~~~~~  628 (758)
                      +++++..|.+
T Consensus       346 ~~~~~~~p~~  355 (389)
T PRK11788        346 GEQLKRKPRY  355 (389)
T ss_pred             HHHHhCCCCE
Confidence            9999888873

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.82  E-value=6.4e-16  Score=165.54  Aligned_cols=555  Identities=11%  Similarity=0.053  Sum_probs=388.4

Q ss_pred             hhcCCCCCchhHHHHHHHHHHHcCCC--CCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC-
Q 004369           46 QLNGNSEPVRSLGFQEALSVLTEGPK--VQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKC-  122 (758)
Q Consensus        46 ~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-  122 (758)
                      +..+...++|..|+.+|...+...+.  ||..  ..+-..+.+.++.+.|+..|.+.++.. +.++.++-.|--.-... 
T Consensus       171 A~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~  247 (1018)
T KOG2002|consen  171 ARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFN  247 (1018)
T ss_pred             HHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHcc
Confidence            34556789999999999998766543  4443  223345578899999999999998765 22233332222222222 


Q ss_pred             --CChHHHHHHHccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCC--CChhhHHHHHHHhcccCChHHHH
Q 004369          123 --GNMEEAQKVFDNLP---RINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNY--PTNVTLGTALTACSSLESIRLGK  195 (758)
Q Consensus       123 --g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~  195 (758)
                        ..+..+..++...-   ..|++..|.|-+-|.-.|+++.+..+...+...-..  .-...|-.+-+++-..|+++.|.
T Consensus       248 d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~  327 (1018)
T KOG2002|consen  248 DSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF  327 (1018)
T ss_pred             chHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence              23445555554432   357888999999999999999999999998765311  12345778889999999999999


Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC--C-CcchHHHHHHHHhhCC----ChhhHHHHHHHHH
Q 004369          196 QIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE--K-NVMSWTTVIGACGENG----EAVQGLRFFSKML  268 (758)
Q Consensus       196 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~l~~~m~  268 (758)
                      ..+-+..+.....-+.-+-.|..+|.+.|+++.|...|+.+..  | +..+.-.|...|+..+    ..+.|..++.+..
T Consensus       328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~  407 (1018)
T KOG2002|consen  328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL  407 (1018)
T ss_pred             HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence            9999888764333234455688999999999999999999876  3 3345555556666654    4466666666665


Q ss_pred             HCCCCCChhhHHHHHHHHcccCChHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC-----
Q 004369          269 SEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLG----IKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH-----  339 (758)
Q Consensus       269 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----  339 (758)
                      +.- ..|...|..+-..+-. ++......++..+    ...+-.+...+.|.+...+...|+++.|...|+....     
T Consensus       408 ~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~  485 (1018)
T KOG2002|consen  408 EQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV  485 (1018)
T ss_pred             hcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence            542 3345556555555443 3433335555543    3456668888999999999999999999999987643     


Q ss_pred             --CCee-ech-----hHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHHhcccchHHHHHH
Q 004369          340 --VNLV-TWN-----AMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLY-TFSSILTICSRLVALEQGEQI  410 (758)
Q Consensus       340 --~~~~-~~~-----~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i  410 (758)
                        +|.. +-+     .+...+-.           .++++.|.+.|......  .|.-+ .|..++......+...++...
T Consensus       486 ~n~de~~~~~lt~~YNlarl~E~-----------l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~  552 (1018)
T KOG2002|consen  486 ANKDEGKSTNLTLKYNLARLLEE-----------LHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLL  552 (1018)
T ss_pred             cCccccccchhHHHHHHHHHHHh-----------hhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHH
Confidence              2321 111     11222222           77889999999999875  45544 344443333445677888888


Q ss_pred             HHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHH------------hcCCHHHH
Q 004369          411 HALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS-----TRTLISWTSMITGFA------------NHSLSHQA  473 (758)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~------------~~g~~~~A  473 (758)
                      +..+.... ..++.+++-+.+.|.+...+..|.+-|..+.     .+|..+.-+|.+.|.            ..+..++|
T Consensus       553 lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA  631 (1018)
T KOG2002|consen  553 LKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA  631 (1018)
T ss_pred             HHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence            88777653 4566777778889999999988888666554     224444444544332            23457899


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--
Q 004369          474 LQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--  551 (758)
Q Consensus       474 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--  551 (758)
                      +++|.+.++.. +-|...-+.+.-.++..|++.+|..+|.+.++..  .-...+|-.+...|..+|++-.|+++|+..  
T Consensus       632 lq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk  708 (1018)
T KOG2002|consen  632 LQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK  708 (1018)
T ss_pred             HHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988853 3356777888888899999999999999998842  234457888999999999999999999876  


Q ss_pred             --CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh-------------------hCCCchhH
Q 004369          552 --DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV-------------------SAGRWEDV  610 (758)
Q Consensus       552 --~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-------------------~~g~~~~a  610 (758)
                        ....+..+...|..++...|.+.+|.+.+..+..+.|.|+..-..++-+..                   ..+..++|
T Consensus       709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a  788 (1018)
T KOG2002|consen  709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEA  788 (1018)
T ss_pred             HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence              333477889999999999999999999999999999998876655554432                   33456777


Q ss_pred             HHHHHHhhhCCC
Q 004369          611 AVVKNLTREEKL  622 (758)
Q Consensus       611 ~~~~~~m~~~~~  622 (758)
                      .++|..+...+-
T Consensus       789 ~r~F~~ls~~~d  800 (1018)
T KOG2002|consen  789 RRLFTELSKNGD  800 (1018)
T ss_pred             HHHHHHHHhcCC
Confidence            888888876443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.82  E-value=5e-18  Score=181.80  Aligned_cols=305  Identities=13%  Similarity=0.103  Sum_probs=191.0

Q ss_pred             HHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHhhcCCh
Q 004369          150 YVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDD---TSVGNSLCSLYSTCGSL  226 (758)
Q Consensus       150 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~~g~~  226 (758)
                      +...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++   ..++..|...|.+.|++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~  123 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL  123 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence            344555556666666655532 11233444455555555555555555555554321111   23566777888888888


Q ss_pred             HHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHH
Q 004369          227 NSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGI  303 (758)
Q Consensus       227 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~  303 (758)
                      ++|..+|+++.+   .+..+++.++..+.+.|++++|++.++++...+..++...                         
T Consensus       124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------------------  178 (389)
T PRK11788        124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE-------------------------  178 (389)
T ss_pred             HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-------------------------
Confidence            888888888865   3556788888888888888888888888876542221100                         


Q ss_pred             HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC--C-CeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhH
Q 004369          304 KLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH--V-NLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLN  380 (758)
Q Consensus       304 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~  380 (758)
                            ....+..+...+.+.|++++|...|+++.+  | +...+..+...|.+           .|++++|+++|+++.
T Consensus       179 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----------~g~~~~A~~~~~~~~  241 (389)
T PRK11788        179 ------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA-----------QGDYAAAIEALERVE  241 (389)
T ss_pred             ------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHH
Confidence                  011234455566667777777777776643  2 23345556666777           788888888888877


Q ss_pred             hCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC--CCChhHHH
Q 004369          381 SSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS--TRTLISWT  458 (758)
Q Consensus       381 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~  458 (758)
                      ..+......++..+..++...|++++|...+..+.+..  |+...+..++..|.+.|++++|..+|+++.  .|+...++
T Consensus       242 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~  319 (389)
T PRK11788        242 EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH  319 (389)
T ss_pred             HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            64322223456666777777777777777777766653  444455677777777888888888777655  35666777


Q ss_pred             HHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccH
Q 004369          459 SMITGFAN---HSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMV  505 (758)
Q Consensus       459 ~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~  505 (758)
                      .++..+..   .|+.++++.++++|.+.+++|+..      .+|.+.|..
T Consensus       320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~  363 (389)
T PRK11788        320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT  363 (389)
T ss_pred             HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence            77766654   457777888888887776666654      236555543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.79  E-value=1.2e-15  Score=175.37  Aligned_cols=401  Identities=10%  Similarity=-0.004  Sum_probs=215.5

Q ss_pred             HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCh
Q 004369          147 ISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSL  226 (758)
Q Consensus       147 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~  226 (758)
                      +......|+.++|++++.+..... ..+...+..+..++...|++++|.++++.+++.. +.+......+...+      
T Consensus        22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l------   93 (765)
T PRK10049         22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTL------   93 (765)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH------
Confidence            344455666666666666654411 1222234444445555555555555555554432 11233333444444      


Q ss_pred             HHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhC
Q 004369          227 NSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLG  306 (758)
Q Consensus       227 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g  306 (758)
                                               ...|++++|+..+++..+.  .|+...+..+..++...|+.+.|...+..+++..
T Consensus        94 -------------------------~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~  146 (765)
T PRK10049         94 -------------------------ADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA  146 (765)
T ss_pred             -------------------------HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence                                     4445555555555444443  1221113334444444455555555555544443


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCee--------echhHHHHHhhhchhhhchhhcCCCh---hHHHHH
Q 004369          307 YASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLV--------TWNAMIAGHAQMMDLAKDDLSAHNGG---TEALSI  375 (758)
Q Consensus       307 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~~~~li~~~~~~~~~~~~~l~~~g~~---~~A~~l  375 (758)
                       +.+..++..+..++.+.|..+.|.+.++.... ++.        ....++..+..      ..+...+++   ++|++.
T Consensus       147 -P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~------~~~~~~~r~~~ad~Al~~  218 (765)
T PRK10049        147 -PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFM------PTRSEKERYAIADRALAQ  218 (765)
T ss_pred             -CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcc------cccChhHHHHHHHHHHHH
Confidence             33444455566677777777878877776654 111        01111111110      000012334   778888


Q ss_pred             HHHhHhC-CCCCCHH-HHHH----HHHHHhcccchHHHHHHHHHHHHcCCC-ChHHHHhHHhhhHHhcCCHHHHHHHHHh
Q 004369          376 FSKLNSS-GMKPDLY-TFSS----ILTICSRLVALEQGEQIHALTLKTGFL-SDVVVGTALVNMYKKCGRIERASRVFVE  448 (758)
Q Consensus       376 ~~~m~~~-g~~p~~~-t~~~----ll~a~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~Li~~y~~~g~~~~A~~~~~~  448 (758)
                      ++.+.+. ...|+.. .+..    .+.++...++.++|...++.+.+.+.+ |+. ....+...|...|++++|+..|++
T Consensus       219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~  297 (765)
T PRK10049        219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE  297 (765)
T ss_pred             HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence            8888754 2233221 1111    133445667788888888887776522 221 222246677778888888888877


Q ss_pred             cCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHhccccHHH
Q 004369          449 MSTRT-------LISWTSMITGFANHSLSHQALQLFEDMLLAG-----------VRPNQ---VTFVGALAACSNAGMVYE  507 (758)
Q Consensus       449 ~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~  507 (758)
                      +...+       ...+..+..++...|++++|+++++++....           -.|+.   ..+..+...+...|++++
T Consensus       298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e  377 (765)
T PRK10049        298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ  377 (765)
T ss_pred             HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence            65322       2234556667777788888888888777642           01221   123344455666677777


Q ss_pred             HHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369          508 ALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLK  585 (758)
Q Consensus       508 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  585 (758)
                      |++.++++...  .+.+...+..+..++...|++++|++.+++. ...|| ...+..++......|++++|+..++++++
T Consensus       378 A~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        378 AEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA  455 (765)
T ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            77777776542  2333556666677777777777777777766 55563 44555555666666777777777777777


Q ss_pred             cCCCCchh
Q 004369          586 LKPKDCES  593 (758)
Q Consensus       586 ~~p~~~~~  593 (758)
                      ..|+++.+
T Consensus       456 ~~Pd~~~~  463 (765)
T PRK10049        456 REPQDPGV  463 (765)
T ss_pred             hCCCCHHH
Confidence            77776543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.78  E-value=9.1e-16  Score=172.50  Aligned_cols=350  Identities=11%  Similarity=-0.030  Sum_probs=258.8

Q ss_pred             hcCChHHHHHHHhccCC------CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHH
Q 004369          222 TCGSLNSAIKAFNRIRE------KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVG  295 (758)
Q Consensus       222 ~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  295 (758)
                      +..+++.-.-+|...++      .+......++..+.+.|++++|+.+++........+.. .+..+..+....|+++.|
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A   95 (656)
T PRK15174         17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAV   95 (656)
T ss_pred             hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHH
Confidence            34455554455554443      12233445667778888888888888888776433333 333444555668888888


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHH
Q 004369          296 AQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEA  372 (758)
Q Consensus       296 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A  372 (758)
                      .+.+..+++.. +.+...+..+...+.+.|++++|...|++...   .+...|..+...+.+           .|++++|
T Consensus        96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~-----------~g~~~eA  163 (656)
T PRK15174         96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVL-----------MDKELQA  163 (656)
T ss_pred             HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----------CCChHHH
Confidence            88888888765 45566778888888999999999999888755   344567777788888           8999999


Q ss_pred             HHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC--
Q 004369          373 LSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS--  450 (758)
Q Consensus       373 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~--  450 (758)
                      ...++++......+.. .+.. +..+...|++++|...+..+.+....++......+...+.+.|++++|...|++..  
T Consensus       164 ~~~~~~~~~~~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~  241 (656)
T PRK15174        164 ISLARTQAQEVPPRGD-MIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR  241 (656)
T ss_pred             HHHHHHHHHhCCCCHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            9999888765332222 2222 33467789999999988887776433444455566778888999999999998866  


Q ss_pred             -CCChhHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC
Q 004369          451 -TRTLISWTSMITGFANHSLSHQ----ALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV  524 (758)
Q Consensus       451 -~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~  524 (758)
                       ..+...+..+...|...|++++    |+..|++..+.  .|+ ...+..+...+...|++++|...++.+.+.   .|+
T Consensus       242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~  316 (656)
T PRK15174        242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPD  316 (656)
T ss_pred             CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC
Confidence             3356778888999999999885    89999999874  565 567888888999999999999999998763   344


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369          525 -MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVI-WSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       525 -~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  591 (758)
                       ...+..+...|.+.|++++|++.++++ ...|+... +..+..++...|+.++|...++++++..|++.
T Consensus       317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        317 LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence             566777889999999999999999988 56676544 44456778899999999999999999998853

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.78  E-value=4.8e-15  Score=158.94  Aligned_cols=543  Identities=13%  Similarity=0.082  Sum_probs=394.8

Q ss_pred             hhHHHHHHHHHHHcCCCCCcchHHHHHHHhh--cCCCcHHHHHHHHHHHHhC--CCCchhHHHHHHHHhhcCCChHHHHH
Q 004369           55 RSLGFQEALSVLTEGPKVQTSSYVSLLQECV--NRKSLSNAEIIHAHIVKTG--SHQDFFVMTFLVNVYGKCGNMEEAQK  130 (758)
Q Consensus        55 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~  130 (758)
                      .+.|...|...++..+. |  ....+.+||.  ..+++..|..+|..++...  ..+|+.+.-  -..+.++|+.+.|+.
T Consensus       146 ~~~A~a~F~~Vl~~sp~-N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~~  220 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPD-N--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGI--GHCFWKLGMSEKALL  220 (1018)
T ss_pred             HHHHHHHHHHHHhhCCc-c--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhccchhhHHH
Confidence            68899999988876543 3  3455666665  5679999999999976643  456665432  245678999999999


Q ss_pred             HHccCCCCCcchHHHHHHHHH------hCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHh
Q 004369          131 VFDNLPRINVVSWTSLISGYV------QNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKY  204 (758)
Q Consensus       131 ~f~~~~~~~~~~~~~li~~~~------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  204 (758)
                      .|....+.|+..-++++....      ....+..++.++...-... .-|+...+.|..-+.-.|+...+..+...+++.
T Consensus       221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~  299 (1018)
T KOG2002|consen  221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN  299 (1018)
T ss_pred             HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence            999988877765555554321      2234566666666655432 236778888888899999999999999999886


Q ss_pred             CCCCC--hhHHHHHHHHHhhcCChHHHHHHHhccCC--CCc--chHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCC-hh
Q 004369          205 QTEDD--TSVGNSLCSLYSTCGSLNSAIKAFNRIRE--KNV--MSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPN-EF  277 (758)
Q Consensus       205 g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~  277 (758)
                      .....  ...|--+.++|...|++++|...|-+...  +|.  ..+--+...|.+.|+.+.+...|+.....  .|| ..
T Consensus       300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~e  377 (1018)
T KOG2002|consen  300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYE  377 (1018)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHH
Confidence            53221  23466688999999999999999988766  333  34556778899999999999999999875  354 45


Q ss_pred             hHHHHHHHHcccC----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH------HHHHHHHccC-CCCCeeech
Q 004369          278 TLTSISSVCGTML----SLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLV------DEAQKLFDGM-SHVNLVTWN  346 (758)
Q Consensus       278 t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m-~~~~~~~~~  346 (758)
                      |...+-..|+..+    ..+.|..+.....+.- +.|...|-.+..+|-...-+      ..|..++..- ....+...|
T Consensus       378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LN  456 (1018)
T KOG2002|consen  378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLN  456 (1018)
T ss_pred             HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            6666666665554    4566677777666654 66777888888777664433      3344333222 224556678


Q ss_pred             hHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhC---CCCCCH-----HHH-HHHHHHHhcccchHHHHHHHHHHHHc
Q 004369          347 AMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSS---GMKPDL-----YTF-SSILTICSRLVALEQGEQIHALTLKT  417 (758)
Q Consensus       347 ~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~---g~~p~~-----~t~-~~ll~a~~~~~~~~~a~~i~~~~~~~  417 (758)
                      .+...+..           .|.+++|...|.+....   ...+|.     .|. -.+.......++.+.|.+.+..+.+.
T Consensus       457 Nvaslhf~-----------~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke  525 (1018)
T KOG2002|consen  457 NVASLHFR-----------LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE  525 (1018)
T ss_pred             hHHHHHHH-----------hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            88888888           99999999999987654   223333     222 23344456677899999999999886


Q ss_pred             CCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHH
Q 004369          418 GFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAG-VRPNQVTFV  493 (758)
Q Consensus       418 ~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~  493 (758)
                      . +.-+..|--|..+-...+...+|...+....   ..|+..|+-+...+.....+..|.+-|+...+.- ..+|..+..
T Consensus       526 h-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli  604 (1018)
T KOG2002|consen  526 H-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI  604 (1018)
T ss_pred             C-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence            3 2233344444444444577889999998866   5577888888888999999999988777766532 347888888


Q ss_pred             HHHHHHhc------------cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--CCCCCHHH
Q 004369          494 GALAACSN------------AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--DFEPNEVI  559 (758)
Q Consensus       494 ~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~  559 (758)
                      +|.+.|..            .+..+.|+++|.++.+  .-+-+...-|-+.-.++..|++.+|..+|.+.  ...-+..+
T Consensus       605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv  682 (1018)
T KOG2002|consen  605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDV  682 (1018)
T ss_pred             HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCce
Confidence            88776643            3456788888888875  34456777788889999999999999999988  22335678


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhccC--CCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          560 WSVFIAGCRRHGNMELGFYAAEQLLKLK--PKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       560 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      |-.+...|...|++-.|.++|+..++..  .+++.+...|+.++.+.|+|.+|.+........
T Consensus       683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~  745 (1018)
T KOG2002|consen  683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL  745 (1018)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            9999999999999999999999998753  467888999999999999999999988877654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.78  E-value=2.3e-15  Score=173.05  Aligned_cols=395  Identities=9%  Similarity=0.006  Sum_probs=295.1

Q ss_pred             CChhHHHHHHHHHhhcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCC-hhhHHHHH
Q 004369          208 DDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPN-EFTLTSIS  283 (758)
Q Consensus       208 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll  283 (758)
                      .++....-.+......|+.++|.+++.+...   .+...+..+...+.+.|++++|.++|++..+.  .|+ ......+.
T Consensus        13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la   90 (765)
T PRK10049         13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLI   90 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            3444555566777888999999999988764   23345888889999999999999999998875  344 45566777


Q ss_pred             HHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC--C-CeeechhHHHHHhhhchhhh
Q 004369          284 SVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH--V-NLVTWNAMIAGHAQMMDLAK  360 (758)
Q Consensus       284 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~  360 (758)
                      ..+...|+.+.|...+..+++.. +.+.. +..+..++...|+.++|...++++.+  | +...+..+...+..      
T Consensus        91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~------  162 (765)
T PRK10049         91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN------  162 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------
Confidence            78889999999999999999874 55556 88899999999999999999999876  3 33445556666666      


Q ss_pred             chhhcCCChhHHHHHHHHhHhCCCCCCHH------HHHHHHHHHh-----cccch---HHHHHHHHHHHHc-CCCChHH-
Q 004369          361 DDLSAHNGGTEALSIFSKLNSSGMKPDLY------TFSSILTICS-----RLVAL---EQGEQIHALTLKT-GFLSDVV-  424 (758)
Q Consensus       361 ~~l~~~g~~~~A~~l~~~m~~~g~~p~~~------t~~~ll~a~~-----~~~~~---~~a~~i~~~~~~~-~~~~~~~-  424 (758)
                           .+..++|+..++....   .|+..      .....+....     ..+++   +.|.+.++.+.+. ...|+.. 
T Consensus       163 -----~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~  234 (765)
T PRK10049        163 -----NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA  234 (765)
T ss_pred             -----CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence                 8999999999886654   33320      1111222221     11223   6677777777754 2222221 


Q ss_pred             H-HhH---HhhhHHhcCCHHHHHHHHHhcCCCC---hh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHH
Q 004369          425 V-GTA---LVNMYKKCGRIERASRVFVEMSTRT---LI-SWTSMITGFANHSLSHQALQLFEDMLLAGVRP---NQVTFV  493 (758)
Q Consensus       425 ~-~~~---Li~~y~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~  493 (758)
                      . ..+   .+..+...|++++|...|+++...+   +. .--.+...|...|++++|+..|+++.......   ......
T Consensus       235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~  314 (765)
T PRK10049        235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA  314 (765)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence            1 111   1233456799999999999988542   11 12225678999999999999999988643111   123456


Q ss_pred             HHHHHHhccccHHHHHHHHHHhhhhcC----------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHH
Q 004369          494 GALAACSNAGMVYEALGYFEMMQKEYK----------IKPV---MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEV  558 (758)
Q Consensus       494 ~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~  558 (758)
                      .+..++...|++++|.++++.+.+...          -.|+   ...+..+...+...|++++|+++++++ ...| +..
T Consensus       315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~  394 (765)
T PRK10049        315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG  394 (765)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            666788999999999999999876311          1123   235567888999999999999999998 5556 677


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          559 IWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       559 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      .+..+...+...|+.++|+..++++++++|+++..+..++..+...|+|++|..+++.+.+.
T Consensus       395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        395 LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999998764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.76  E-value=8.1e-15  Score=165.51  Aligned_cols=437  Identities=12%  Similarity=0.028  Sum_probs=286.5

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhh
Q 004369          143 WTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYST  222 (758)
Q Consensus       143 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~  222 (758)
                      +......+.+.|++++|+..|++..+  +.|+...|..+..++...|+++.|...+..+++.. +.+...+..+...|..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            44556677778888888888888765  45677777777777888888888888888877753 2245567777788888


Q ss_pred             cCChHHHHHHHhccCCCC---cchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHH
Q 004369          223 CGSLNSAIKAFNRIREKN---VMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVH  299 (758)
Q Consensus       223 ~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  299 (758)
                      .|++++|..-|......+   ......++..+..    ..+.....+..+.. .++...+..+.. +...........-+
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~  280 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL  280 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence            888888887775443211   1111111111111    12222222222221 111111111111 11100000000000


Q ss_pred             HHHHHhCCCCchhHHHHHHHHH------HhcCCHHHHHHHHccCCCC------CeeechhHHHHHhhhchhhhchhhcCC
Q 004369          300 SLGIKLGYASNLRVRNSIMYLY------LKCGLVDEAQKLFDGMSHV------NLVTWNAMIAGHAQMMDLAKDDLSAHN  367 (758)
Q Consensus       300 ~~~~~~g~~~~~~~~~~li~~~------~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~~~l~~~g  367 (758)
                      ....    ..+......++..+      ...+++++|.+.|+...+.      +...|+.+...+..           .|
T Consensus       281 ~~~~----~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~-----------~g  345 (615)
T TIGR00990       281 EDSN----ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL-----------KG  345 (615)
T ss_pred             hccc----ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-----------cC
Confidence            0000    00111111111111      2246788888888876542      23456666667777           99


Q ss_pred             ChhHHHHHHHHhHhCCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHH
Q 004369          368 GGTEALSIFSKLNSSGMKPD-LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVF  446 (758)
Q Consensus       368 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~  446 (758)
                      ++++|+..|++..+.  .|+ ...|..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|
T Consensus       346 ~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~  422 (615)
T TIGR00990       346 KHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDY  422 (615)
T ss_pred             CHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999998875  454 4577777888889999999999999888764 456788889999999999999999999


Q ss_pred             HhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCC
Q 004369          447 VEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIK  522 (758)
Q Consensus       447 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~  522 (758)
                      ++..   ..+...|..+...+.+.|++++|+..|++..+.  .|+ ...+..+...+...|++++|...|+...+.   .
T Consensus       423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~  497 (615)
T TIGR00990       423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---E  497 (615)
T ss_pred             HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---C
Confidence            9876   335677888899999999999999999999874  455 677888888999999999999999998752   2


Q ss_pred             CCH--------HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369          523 PVM--------DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE  592 (758)
Q Consensus       523 p~~--------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  592 (758)
                      |+.        ..++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|...+++++++.+....
T Consensus       498 p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e  577 (615)
T TIGR00990       498 KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE  577 (615)
T ss_pred             CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence            321        11222233444579999999999987 66674 557899999999999999999999999998776433


Q ss_pred             hHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          593 SYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       593 ~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      .+        ....|.+|.++....++
T Consensus       578 ~~--------~a~~~~~a~~~~~~~~~  596 (615)
T TIGR00990       578 LV--------QAISYAEATRTQIQVQE  596 (615)
T ss_pred             HH--------HHHHHHHHHHHHHHHHH
Confidence            21        22345556666554443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.76  E-value=3.3e-14  Score=160.05  Aligned_cols=435  Identities=10%  Similarity=0.032  Sum_probs=283.0

Q ss_pred             HhhcCCChHHHHHHHccCCCCCcc---hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHH---HHHhcccCCh
Q 004369          118 VYGKCGNMEEAQKVFDNLPRINVV---SWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTA---LTACSSLESI  191 (758)
Q Consensus       118 ~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~  191 (758)
                      ...+.|+++.|+..|++..+.++.   ....++..+...|+.++|+..+++..    .|+...+..+   ...+...|++
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy  118 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW  118 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence            457888888888888887653332   23377777888888888888888876    3333332222   3456667888


Q ss_pred             HHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhh--CCChhhHHHHHHHHHH
Q 004369          192 RLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGE--NGEAVQGLRFFSKMLS  269 (758)
Q Consensus       192 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~  269 (758)
                      +.|.++++.+++.... ++.++..|+..|...++.++|++.++++...+......+..++..  .++..+|++.++++.+
T Consensus       119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~  197 (822)
T PRK14574        119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR  197 (822)
T ss_pred             HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            8888888888776533 355566777777777888888888877776433322223333333  4555557777777776


Q ss_pred             CCCCCC-hhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhH
Q 004369          270 EGIQPN-EFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAM  348 (758)
Q Consensus       270 ~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l  348 (758)
                      ..  |+ ...+.....++.+.|-...|.++...      .|+.++-......     +.+.|.+..+.-..++.      
T Consensus       198 ~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~------  258 (822)
T PRK14574        198 LA--PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR------  258 (822)
T ss_pred             hC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcccccc------
Confidence            53  43 33334444555555555444444332      1211111111100     01111111111100000      


Q ss_pred             HHHHhhhchhhhchhhcCCC---hhHHHHHHHHhHhC-CCCCCH-HHH----HHHHHHHhcccchHHHHHHHHHHHHcCC
Q 004369          349 IAGHAQMMDLAKDDLSAHNG---GTEALSIFSKLNSS-GMKPDL-YTF----SSILTICSRLVALEQGEQIHALTLKTGF  419 (758)
Q Consensus       349 i~~~~~~~~~~~~~l~~~g~---~~~A~~l~~~m~~~-g~~p~~-~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~~~  419 (758)
                                     ...++   .+.|+.-++.+... +-.|.. .-|    .-.+-++...++..++...++.+...+.
T Consensus       259 ---------------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~  323 (822)
T PRK14574        259 ---------------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY  323 (822)
T ss_pred             ---------------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence                           00122   34566666665542 222322 222    2345577888999999999999998887


Q ss_pred             CChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----
Q 004369          420 LSDVVVGTALVNMYKKCGRIERASRVFVEMSTR---------TLISWTSMITGFANHSLSHQALQLFEDMLLAGV-----  485 (758)
Q Consensus       420 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----  485 (758)
                      +.-..+-.++.++|...+++++|+.+|+.+...         +......|.-+|...+++++|..+++++.+...     
T Consensus       324 ~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~  403 (822)
T PRK14574        324 KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGV  403 (822)
T ss_pred             CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEec
Confidence            666678889999999999999999999987532         233356788899999999999999999987311     


Q ss_pred             --------CCCHH-HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC
Q 004369          486 --------RPNQV-TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP  555 (758)
Q Consensus       486 --------~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p  555 (758)
                              .||-. .+..+...+...|++.+|++.++.+..  .-+-|......+.+.+...|++.+|++.++.. ...|
T Consensus       404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P  481 (822)
T PRK14574        404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAP  481 (822)
T ss_pred             cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence                    12322 334455667889999999999999975  34556788889999999999999999999776 6677


Q ss_pred             -CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh
Q 004369          556 -NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES  593 (758)
Q Consensus       556 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  593 (758)
                       +..+....+.+....+++++|..+.+.+++..|+++.+
T Consensus       482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~  520 (822)
T PRK14574        482 RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS  520 (822)
T ss_pred             ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence             45566777888888899999999999999999998744

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.74  E-value=6.8e-15  Score=165.47  Aligned_cols=326  Identities=10%  Similarity=-0.012  Sum_probs=263.9

Q ss_pred             hhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHH
Q 004369          276 EFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGH  352 (758)
Q Consensus       276 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~  352 (758)
                      ......++..+.+.|+.+.|..++...+...... ......++......|++++|...|+++..   .+...|..+...+
T Consensus        42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l  120 (656)
T PRK15174         42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL  120 (656)
T ss_pred             ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            3445667778888999999999999998876444 44455555667789999999999999865   3445677777788


Q ss_pred             hhhchhhhchhhcCCChhHHHHHHHHhHhCCCCC-CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhh
Q 004369          353 AQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP-DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVN  431 (758)
Q Consensus       353 ~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~  431 (758)
                      .+           .|++++|+..|++....  .| +...+..+...+...|+.++|...+..+...... +...+..+. 
T Consensus       121 ~~-----------~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~~-  185 (656)
T PRK15174        121 LK-----------SKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATCL-  185 (656)
T ss_pred             HH-----------cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHHH-
Confidence            88           99999999999999875  45 4567777888999999999999999888765433 333333333 


Q ss_pred             hHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHH
Q 004369          432 MYKKCGRIERASRVFVEMSTR----TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVY  506 (758)
Q Consensus       432 ~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~  506 (758)
                      .+.+.|++++|...++.+.+.    +...+..+...+...|++++|+..|+++.+.  .|+ ...+..+...+...|+++
T Consensus       186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~  263 (656)
T PRK15174        186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSR  263 (656)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCch
Confidence            478899999999999987643    2334555677889999999999999999985  454 667777888899999998


Q ss_pred             H----HHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHH
Q 004369          507 E----ALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAA  580 (758)
Q Consensus       507 ~----a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~  580 (758)
                      +    |...|+.+.+.  .+.+...+..+...+.+.|++++|+..+++. ...| +...+..+..++...|++++|...+
T Consensus       264 eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l  341 (656)
T PRK15174        264 EAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEF  341 (656)
T ss_pred             hhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            6    89999998762  2334778999999999999999999999998 6667 4667888999999999999999999


Q ss_pred             HHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369          581 EQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       581 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  621 (758)
                      +++++.+|+++..+..++.+|...|++++|...++...+..
T Consensus       342 ~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        342 VQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             HHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            99999999988777778999999999999999999886653

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.73  E-value=8.6e-14  Score=156.76  Aligned_cols=435  Identities=10%  Similarity=0.046  Sum_probs=306.3

Q ss_pred             HHHhCCCchHHHHHHHHHHHcCCCCChh-hHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChH
Q 004369          149 GYVQNSQPELAIHVFLDMLEAGNYPTNV-TLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLN  227 (758)
Q Consensus       149 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~  227 (758)
                      ...+.|+++.|++.|++..+.  .|+.. ....++..+...|+.++|...++..+. .-.........+...|...|+++
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd  119 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD  119 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence            346899999999999999875  45542 222777778888999999999888871 11112223333456888889999


Q ss_pred             HHHHHHhccCCC---CcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHH
Q 004369          228 SAIKAFNRIREK---NVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIK  304 (758)
Q Consensus       228 ~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  304 (758)
                      +|.++|+++.+.   |...+..++..+.+.++.++|++.++++...  .|+...+..++..+...++...|.+.++.+++
T Consensus       120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~  197 (822)
T PRK14574        120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR  197 (822)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            999999998763   3456667778888899999999999998775  45555554444444445556558888888888


Q ss_pred             hCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCC
Q 004369          305 LGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGM  384 (758)
Q Consensus       305 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~  384 (758)
                      .. +.+...+..++....+.|-...|.++..+-++  ..+-.....  .              ..+.|.+.    ++.+.
T Consensus       198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~--l--------------~~~~~a~~----vr~a~  254 (822)
T PRK14574        198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQ--L--------------ERDAAAEQ----VRMAV  254 (822)
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHH--H--------------HHHHHHHH----Hhhcc
Confidence            75 56777778888888888888888887776543  111111000  0              00112122    11111


Q ss_pred             CCCH---HHHHHHHHHHhcccchHHHHHHHHHHHHc-C-CCChHHH-HhHH---hhhHHhcCCHHHHHHHHHhcCCCC--
Q 004369          385 KPDL---YTFSSILTICSRLVALEQGEQIHALTLKT-G-FLSDVVV-GTAL---VNMYKKCGRIERASRVFVEMSTRT--  453 (758)
Q Consensus       385 ~p~~---~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~-~~~~~~~-~~~L---i~~y~~~g~~~~A~~~~~~~~~~~--  453 (758)
                      .|+.   .-|.          -.+.+..-++.+... + .++.... ..+.   +-++.+.|+..++.+.|+.+....  
T Consensus       255 ~~~~~~~~r~~----------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~  324 (822)
T PRK14574        255 LPTRSETERFD----------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK  324 (822)
T ss_pred             cccccchhhHH----------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC
Confidence            1111   0111          123333344444331 1 1222222 2233   335678899999999999998442  


Q ss_pred             h--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcC------
Q 004369          454 L--ISWTSMITGFANHSLSHQALQLFEDMLLAGV-----RPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYK------  520 (758)
Q Consensus       454 ~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~------  520 (758)
                      +  .+--++..+|...+++++|+.+|+++.....     .++......|..++..++++++|..+++.+.+...      
T Consensus       325 ~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~  404 (822)
T PRK14574        325 MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY  404 (822)
T ss_pred             CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence            2  3456788999999999999999999976431     22333457888999999999999999999986211      


Q ss_pred             ----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369          521 ----IKPV---MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       521 ----~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  591 (758)
                          -.|+   ...+..++..+...|++.+|++.++++ ...| |...+..+...+...|+..+|+..++.+..++|++.
T Consensus       405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~  484 (822)
T PRK14574        405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSL  484 (822)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccH
Confidence                0122   244556788899999999999999999 5566 888999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369          592 ESYAMLLDIFVSAGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       592 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  621 (758)
                      .+...++..+...|+|++|.++.+...+..
T Consensus       485 ~~~~~~~~~al~l~e~~~A~~~~~~l~~~~  514 (822)
T PRK14574        485 ILERAQAETAMALQEWHQMELLTDDVISRS  514 (822)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence            999999999999999999999988876643

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=3.3e-13  Score=131.88  Aligned_cols=318  Identities=17%  Similarity=0.162  Sum_probs=195.5

Q ss_pred             CCchhHHHHHHHHHHHcCCCCCcchHHHHHHH--hhcCCCcHHHH-HHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHH
Q 004369           52 EPVRSLGFQEALSVLTEGPKVQTSSYVSLLQE--CVNRKSLSNAE-IIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEA  128 (758)
Q Consensus        52 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A  128 (758)
                      ++...++.-++.+|...|.+.+...-..|+..  |-+..++..+. +-|-.|...| .....+|        |.|.+.+ 
T Consensus       128 ~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd-  197 (625)
T KOG4422|consen  128 SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD-  197 (625)
T ss_pred             hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH-
Confidence            44555566666666666655554443333332  22233332221 1222222222 1111221        3344433 


Q ss_pred             HHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCC
Q 004369          129 QKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTED  208 (758)
Q Consensus       129 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~  208 (758)
                       -+|+..|+ ...++..||.|+|+--..+.|.++|++-.....+.+..+||.+|.+.+-.    .++.+..+|+...+.|
T Consensus       198 -L~~E~~PK-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~P  271 (625)
T KOG4422|consen  198 -LLFETLPK-TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTP  271 (625)
T ss_pred             -HHHhhcCC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCC
Confidence             45555554 45578999999999999999999999988888888999999998875433    3478888888888889


Q ss_pred             ChhHHHHHHHHHhhcCChHHHHHHH----hccC----CCCcchHHHHHHHHhhCCChhh-HHHHHHHHHH----CCCCC-
Q 004369          209 DTSVGNSLCSLYSTCGSLNSAIKAF----NRIR----EKNVMSWTTVIGACGENGEAVQ-GLRFFSKMLS----EGIQP-  274 (758)
Q Consensus       209 ~~~~~~~Li~~y~~~g~~~~A~~~f----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~g~~p-  274 (758)
                      |..++|+++....+.|+++.|++.+    .+|+    +|...+|..+|..+.+.+++.+ |..++.+...    ...+| 
T Consensus       272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~  351 (625)
T KOG4422|consen  272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI  351 (625)
T ss_pred             chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence            9999999998888888887765443    3333    2566666666666666655533 3333333322    11222 


Q ss_pred             ---ChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHH
Q 004369          275 ---NEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAG  351 (758)
Q Consensus       275 ---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~  351 (758)
                         |...|.+.+..|.+..+.+.|.++++......   |          |...|..      +     ....-|..+...
T Consensus       352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~---N----------~~~ig~~------~-----~~~fYyr~~~~l  407 (625)
T KOG4422|consen  352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD---N----------WKFIGPD------Q-----HRNFYYRKFFDL  407 (625)
T ss_pred             CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC---c----------hhhcChH------H-----HHHHHHHHHHHH
Confidence               33445566666666666666666665443211   0          0000000      0     001123334444


Q ss_pred             HhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC
Q 004369          352 HAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFL  420 (758)
Q Consensus       352 ~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~  420 (758)
                      .++           ....+.-+..|..|.-.-+-|+..+...+++|....+.++-..+++..++..|..
T Consensus       408 icq-----------~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght  465 (625)
T KOG4422|consen  408 ICQ-----------MESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT  465 (625)
T ss_pred             HHH-----------HHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence            555           7777888999999998888899999999999999999999999999988887743

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.68  E-value=1.1e-13  Score=135.77  Aligned_cols=481  Identities=14%  Similarity=0.106  Sum_probs=299.3

Q ss_pred             HHHHhhcCCCcHHHHHHHHHHHHhCCCCchhH-HHHHHHHhhcCCChHHHHHHHc----cCCCCCc----chHHHHHHHH
Q 004369           80 LLQECVNRKSLSNAEIIHAHIVKTGSHQDFFV-MTFLVNVYGKCGNMEEAQKVFD----NLPRINV----VSWTSLISGY  150 (758)
Q Consensus        80 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~f~----~~~~~~~----~~~~~li~~~  150 (758)
                      |.+.|.......+|...++.+++....|+.-. --.+-+.|.+...+.+|++.++    ++|.-+.    ...|.+.-.+
T Consensus       207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf  286 (840)
T KOG2003|consen  207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF  286 (840)
T ss_pred             HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence            34445556667778888888887776665432 2234556777788888887664    3443222    2344444467


Q ss_pred             HhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHH
Q 004369          151 VQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAI  230 (758)
Q Consensus       151 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~  230 (758)
                      .+.|+++.|+..|+...+.  .||..+-..++-.+...|+.+..++.|..++..-..+|..-|       .+..      
T Consensus       287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky-------i~~~------  351 (840)
T KOG2003|consen  287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY-------IKEK------  351 (840)
T ss_pred             EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc-------cCCc------
Confidence            7888888888888877664  577666556666666677878888777777765444433211       1100      


Q ss_pred             HHHhccCCCCcchHHHHH-----HHHhhC--CChhhHHHHHHHHHHCCCCCChhh-HHHHHHHHcccCChHHHHHHHHHH
Q 004369          231 KAFNRIREKNVMSWTTVI-----GACGEN--GEAVQGLRFFSKMLSEGIQPNEFT-LTSISSVCGTMLSLRVGAQVHSLG  302 (758)
Q Consensus       231 ~~f~~~~~~~~~~~~~li-----~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~  302 (758)
                            ..|+....|.-|     ...-+.  .+.++++-.-.++..--+.||-.. +...+...-.....+.|.      
T Consensus       352 ------ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~------  419 (840)
T KOG2003|consen  352 ------DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI------  419 (840)
T ss_pred             ------CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh------
Confidence                  012222222222     111111  112233333333333223333211 111111111111111111      


Q ss_pred             HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhC
Q 004369          303 IKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSS  382 (758)
Q Consensus       303 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~  382 (758)
                             +..  -.-..-|.+.|+++.|.++++-....|..+-++-..-++...-.     ..-.++..|...-+.....
T Consensus       420 -------dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~fl-----qggk~~~~aqqyad~aln~  485 (840)
T KOG2003|consen  420 -------DLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFL-----QGGKDFADAQQYADIALNI  485 (840)
T ss_pred             -------hhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHH-----hcccchhHHHHHHHHHhcc
Confidence                   111  11123477889999999998888776654433332222111000     0022344444444433321


Q ss_pred             CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHH
Q 004369          383 GMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTS  459 (758)
Q Consensus       383 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~  459 (758)
                      . +-+....+.--......|+++.|.+.+.+.....-.-....|| +.-.+-+.|++++|++.|-++.   ..++...-.
T Consensus       486 d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~q  563 (840)
T KOG2003|consen  486 D-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQ  563 (840)
T ss_pred             c-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            1 1122222111222334688999999999888765333333444 3445778999999999998765   456667777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC
Q 004369          460 MITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG  539 (758)
Q Consensus       460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  539 (758)
                      +.+.|....+..+|++++.+.... ++.|...+.-|...|-+.|+-.+|.+++-.--+  -++.+.++..-|..-|....
T Consensus       564 ianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtq  640 (840)
T KOG2003|consen  564 IANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQ  640 (840)
T ss_pred             HHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhH
Confidence            888899999999999999877653 444577888888899999999999998766533  34556888888888899999


Q ss_pred             CHHHHHHHHHHc-CCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369          540 CIEEAFDFIKKM-DFEPNEVIWSVFIAGCR-RHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGR  606 (758)
Q Consensus       540 ~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  606 (758)
                      -+++|+.+|++. -++|+..-|..++..|. +.|+++.|...++...+.-|.|......|+.++...|.
T Consensus       641 f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  641 FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            999999999998 68899999999988874 58999999999999999999999999999999988885

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=5.1e-12  Score=123.73  Aligned_cols=418  Identities=12%  Similarity=0.109  Sum_probs=276.8

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhc--ccCChHHH-HHHHHHHHHhCCCCChhHHHH
Q 004369          139 NVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACS--SLESIRLG-KQIHAYVVKYQTEDDTSVGNS  215 (758)
Q Consensus       139 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~  215 (758)
                      .+++=|.|+.. ...|....+.-+|+.|...|+..+...-..+++..+  ...+.-.+ .+.|-.|.+.|-. +..+|  
T Consensus       115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--  190 (625)
T KOG4422|consen  115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--  190 (625)
T ss_pred             hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence            34566666654 457889999999999999988777666555555322  22222211 2233333333322 12222  


Q ss_pred             HHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHH
Q 004369          216 LCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVG  295 (758)
Q Consensus       216 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  295 (758)
                            |.|++.+   ++-+...+...+|..||.|+++--..+.|.++|++-.....+.+..+|+.++.+.+    +..+
T Consensus       191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~  257 (625)
T KOG4422|consen  191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVG  257 (625)
T ss_pred             ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhcc
Confidence                  3455444   44444445678999999999999999999999999998888999999999988764    3445


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH----ccCC----CCCeeechhHHHHHhhhchhhhchhhcCC
Q 004369          296 AQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLF----DGMS----HVNLVTWNAMIAGHAQMMDLAKDDLSAHN  367 (758)
Q Consensus       296 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~----~~~~~~~~~li~~~~~~~~~~~~~l~~~g  367 (758)
                      +++..+|+...+.||..++|+++....+.|+++.|++.+    .+|+    +|...+|..+|..+.+           .+
T Consensus       258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~r-----------e~  326 (625)
T KOG4422|consen  258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKR-----------ES  326 (625)
T ss_pred             HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcc-----------cC
Confidence            889999999999999999999999999999988766554    4444    3888899999998888           66


Q ss_pred             ChhH-HHHHHHHhHhC--C--C---CC-CHHHHHHHHHHHhcccchHHHHHHHHHHHHcC----CCCh---HHHHhHHhh
Q 004369          368 GGTE-ALSIFSKLNSS--G--M---KP-DLYTFSSILTICSRLVALEQGEQIHALTLKTG----FLSD---VVVGTALVN  431 (758)
Q Consensus       368 ~~~~-A~~l~~~m~~~--g--~---~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~----~~~~---~~~~~~Li~  431 (758)
                      +..+ |..+..+++..  |  +   .| |...|.+.+..|.+..+.+.|.++++......    +.++   ..-|..+.+
T Consensus       327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~  406 (625)
T KOG4422|consen  327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFD  406 (625)
T ss_pred             CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHH
Confidence            5543 55566665442  2  2   33 56788999999999999999999998775421    2333   234567788


Q ss_pred             hHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc----
Q 004369          432 MYKKCGRIERASRVFVEMST----RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAG----  503 (758)
Q Consensus       432 ~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----  503 (758)
                      ..+....++.-...++.|..    ++..+-..++.+....|+++-.-.++..|...|-.-+...-.-++.-+++..    
T Consensus       407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~  486 (625)
T KOG4422|consen  407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPL  486 (625)
T ss_pred             HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCC
Confidence            88888999999999998874    3555556677777788888887788877777664433333333333222221    


Q ss_pred             ----------------cHHHHHH-HHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-------CCCCCHHH
Q 004369          504 ----------------MVYEALG-YFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-------DFEPNEVI  559 (758)
Q Consensus       504 ----------------~~~~a~~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~  559 (758)
                                      ++.++.+ .-.++.   ...-.....+++.-.+.|.|+.++|.+++.-.       +..|....
T Consensus       487 tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnA  563 (625)
T KOG4422|consen  487 TPEREQLQVAFAKCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNA  563 (625)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhh
Confidence                            0111111 111121   22233455677777788888888888877654       23333333


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369          560 WSVFIAGCRRHGNMELGFYAAEQLLKLK  587 (758)
Q Consensus       560 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~  587 (758)
                      .--|+.+-.+.++.-.|..+++-+.+.+
T Consensus       564 m~El~d~a~~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  564 MAELMDSAKVSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            3455556666666666776666665444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.64  E-value=4e-11  Score=128.61  Aligned_cols=340  Identities=11%  Similarity=0.097  Sum_probs=185.3

Q ss_pred             CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccC---CCCCcchHHHHHHHHHhCCCchHHHHHHH
Q 004369           88 KSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNL---PRINVVSWTSLISGYVQNSQPELAIHVFL  164 (758)
Q Consensus        88 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~  164 (758)
                      |+++.|..++..+++.. +.....|-.|...|-..|+.+++...+-..   ...|..-|-.+-....+.|++++|.-.|.
T Consensus       153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~  231 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS  231 (895)
T ss_pred             CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence            66666666666666554 444555566666666666666665544222   22344455555555556666666666666


Q ss_pred             HHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHH----HHHHHhhcCChHHHHHHHhccCC--
Q 004369          165 DMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNS----LCSLYSTCGSLNSAIKAFNRIRE--  238 (758)
Q Consensus       165 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----Li~~y~~~g~~~~A~~~f~~~~~--  238 (758)
                      +.++.. +++...+---...|-+.|+...|..-+.++.....+.|..-...    .+..|...++-+.|.+.++....  
T Consensus       232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~  310 (895)
T KOG2076|consen  232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE  310 (895)
T ss_pred             HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence            665542 11222222223345555666666666666555443222222222    23445555555666666665543  


Q ss_pred             C---CcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCCh----------------------hhH----HHHHHHHccc
Q 004369          239 K---NVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNE----------------------FTL----TSISSVCGTM  289 (758)
Q Consensus       239 ~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------------~t~----~~ll~~~~~~  289 (758)
                      .   +...+|.++..|.+...++.|......+......+|.                      ..|    .-+.-++...
T Consensus       311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L  390 (895)
T KOG2076|consen  311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL  390 (895)
T ss_pred             cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence            1   3345677777777777777777777766552111111                      111    1222333444


Q ss_pred             CChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC----CCeeechhHHHHHhhhchhhhchh
Q 004369          290 LSLRVGAQVHSLGIKLG--YASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH----VNLVTWNAMIAGHAQMMDLAKDDL  363 (758)
Q Consensus       290 ~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~~~l  363 (758)
                      ...+....+.....+..  +..+...|.-+.++|...|++.+|.++|..+..    .+...|--+..+|..         
T Consensus       391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~---------  461 (895)
T KOG2076|consen  391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME---------  461 (895)
T ss_pred             cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH---------
Confidence            55555555555555555  334556667777777777777777777777654    344566666666666         


Q ss_pred             hcCCChhHHHHHHHHhHhCCCCCCH-HHHHHHHHHHhcccchHHHHHHHHHHH--------HcCCCChHHHHhHHhhhHH
Q 004369          364 SAHNGGTEALSIFSKLNSSGMKPDL-YTFSSILTICSRLVALEQGEQIHALTL--------KTGFLSDVVVGTALVNMYK  434 (758)
Q Consensus       364 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~--------~~~~~~~~~~~~~Li~~y~  434 (758)
                        .|.+++|++.|......  .|+. ..-.++-..+.+.|+.++|.+.+..+.        ..+..|+..+.....+.|.
T Consensus       462 --l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~  537 (895)
T KOG2076|consen  462 --LGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF  537 (895)
T ss_pred             --HhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence              77777777777776653  3322 222334444556666666666665532        2234455555555556666


Q ss_pred             hcCCHHHH
Q 004369          435 KCGRIERA  442 (758)
Q Consensus       435 ~~g~~~~A  442 (758)
                      +.|+.++=
T Consensus       538 ~~gk~E~f  545 (895)
T KOG2076|consen  538 QVGKREEF  545 (895)
T ss_pred             HhhhHHHH
Confidence            66666553

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.63  E-value=1.9e-10  Score=118.70  Aligned_cols=490  Identities=13%  Similarity=0.084  Sum_probs=311.8

Q ss_pred             cCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHH
Q 004369           86 NRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR---INVVSWTSLISGYVQNSQPELAIHV  162 (758)
Q Consensus        86 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~  162 (758)
                      .....+.|+-++.+.++.- +.+...|.    +|++...++.|.+++++..+   .+...|.+-...=-.+|+.+....+
T Consensus       388 elE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki  462 (913)
T KOG0495|consen  388 ELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI  462 (913)
T ss_pred             hccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence            3444555666666666542 33333333    34455556667776655543   3455565555555566776666666


Q ss_pred             HHH----HHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHhhcCChHHHHHHHhcc
Q 004369          163 FLD----MLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDD--TSVGNSLCSLYSTCGSLNSAIKAFNRI  236 (758)
Q Consensus       163 ~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~  236 (758)
                      ..+    +...|+..+...|..=..+|-..|..-.+..+...++..|++..  ..+|+.-...+.+.+.++-|+.+|...
T Consensus       463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a  542 (913)
T KOG0495|consen  463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA  542 (913)
T ss_pred             HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence            544    33456666777776666677777777777777666666665432  335555566666666666666666655


Q ss_pred             CC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhH
Q 004369          237 RE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRV  313 (758)
Q Consensus       237 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~  313 (758)
                      .+   .+...|...+..--..|..++-..+|++....                                   - +.....
T Consensus       543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-----------------------------------~-pkae~l  586 (913)
T KOG0495|consen  543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-----------------------------------C-PKAEIL  586 (913)
T ss_pred             HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----------------------------------C-CcchhH
Confidence            44   23445555544444455566666666555543                                   1 222333


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHH
Q 004369          314 RNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYT  390 (758)
Q Consensus       314 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t  390 (758)
                      |-....-+...|++..|+.++.+.-+   .+...|-+-+..-..           +..+++|..+|.+....  .|+...
T Consensus       587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~e-----------n~e~eraR~llakar~~--sgTeRv  653 (913)
T KOG0495|consen  587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE-----------NDELERARDLLAKARSI--SGTERV  653 (913)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc-----------cccHHHHHHHHHHHhcc--CCcchh
Confidence            34444445555666666666555433   123345555555445           66677777777666553  445555


Q ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhc
Q 004369          391 FSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGFANH  467 (758)
Q Consensus       391 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~  467 (758)
                      |.--+..---++..++|.++++..++. ++.-...|-.+...|-+.++++.|.+.|..-.+   ..+..|-.|...--+.
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~  732 (913)
T KOG0495|consen  654 WMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD  732 (913)
T ss_pred             hHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence            544444445556677777777666664 344456777777788888888888887776542   2445677777777777


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004369          468 SLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDF  547 (758)
Q Consensus       468 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  547 (758)
                      |+.-+|..++++.+..+ +-|...|...+..=.+.|+.++|..+..++.+  ..+.+...|.--|.+..+.++-..+.+.
T Consensus       733 ~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DA  809 (913)
T KOG0495|consen  733 GQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDA  809 (913)
T ss_pred             cchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHH
Confidence            88888888888877653 33566777888888888888888888777766  4555667777778888888877777777


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCc
Q 004369          548 IKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDD  627 (758)
Q Consensus       548 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  627 (758)
                      +++..  -|..+.-.+...+....+++.|..-|++++..+|++..++..+...+...|.-++-.++++......  +.-|
T Consensus       810 Lkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG  885 (913)
T KOG0495|consen  810 LKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHG  885 (913)
T ss_pred             HHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCC
Confidence            77653  3555566677777777888888888999999888888888888888888888888888888776532  3346


Q ss_pred             eeEEEECCEE
Q 004369          628 WSWIRIKDKV  637 (758)
Q Consensus       628 ~s~~~~~~~~  637 (758)
                      ..|..+...+
T Consensus       886 ~~W~avSK~i  895 (913)
T KOG0495|consen  886 ELWQAVSKDI  895 (913)
T ss_pred             cHHHHHhhhH
Confidence            6776664444

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.62  E-value=1.7e-10  Score=119.10  Aligned_cols=437  Identities=14%  Similarity=0.102  Sum_probs=336.2

Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC
Q 004369          159 AIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE  238 (758)
Q Consensus       159 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~  238 (758)
                      =.+++++.++.  -|+.+.   |=++.......+.|+-++..+++.- +.+...|    -+|.+..-++.|.+++++..+
T Consensus       365 K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe  434 (913)
T KOG0495|consen  365 KKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKARE  434 (913)
T ss_pred             HHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence            34555555553  344332   2334445566666888888888753 2333334    455666788999999988766


Q ss_pred             ---CCcchHHHHHHHHhhCCChhhHHHHHHH----HHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCc-
Q 004369          239 ---KNVMSWTTVIGACGENGEAVQGLRFFSK----MLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASN-  310 (758)
Q Consensus       239 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-  310 (758)
                         .+...|.+-...--.+|+.+....+..+    +...|+..+...|..=..+|-..|..-....+...++..|++.. 
T Consensus       435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed  514 (913)
T KOG0495|consen  435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED  514 (913)
T ss_pred             hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence               4777888777666778998888888765    45679999999998888899999999999999999998887553 


Q ss_pred             -hhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCC
Q 004369          311 -LRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP  386 (758)
Q Consensus       311 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p  386 (758)
                       ..+|+.-.+.|.+.+.++-|+.+|....+   .+...|......--.           .|..++...+|++.... ++-
T Consensus       515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~-----------hgt~Esl~Allqkav~~-~pk  582 (913)
T KOG0495|consen  515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKS-----------HGTRESLEALLQKAVEQ-CPK  582 (913)
T ss_pred             hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHh-----------cCcHHHHHHHHHHHHHh-CCc
Confidence             46888888999999999999999988765   344556555544334           88889999999999876 233


Q ss_pred             CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHH
Q 004369          387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS--TRTLISWTSMITGF  464 (758)
Q Consensus       387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~  464 (758)
                      ....+.......-..|++..|+.++..+.+.. +-+..++-+-+.......+++.|..+|.+..  .+....|.--+...
T Consensus       583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~e  661 (913)
T KOG0495|consen  583 AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLE  661 (913)
T ss_pred             chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHH
Confidence            34445555556677799999999999998875 3477888888999999999999999999876  44556777766666


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004369          465 ANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEE  543 (758)
Q Consensus       465 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  543 (758)
                      --.++.++|++++++.++  .-|+ ...|..+...+.+.++++.|.+.|..=.+  .++-..-.|-.|.+.=-+.|.+-+
T Consensus       662 r~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~r  737 (913)
T KOG0495|consen  662 RYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVR  737 (913)
T ss_pred             HHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhh
Confidence            778899999999999888  4677 45677777788899999999998876654  333446678888888889999999


Q ss_pred             HHHHHHHcC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC------------------------------Cc
Q 004369          544 AFDFIKKMD-FEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK------------------------------DC  591 (758)
Q Consensus       544 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------------------------~~  591 (758)
                      |..++++.. -.| |...|...+..-.++|+.+.|..++.++++--|.                              |+
T Consensus       738 AR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp  817 (913)
T KOG0495|consen  738 ARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP  817 (913)
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCc
Confidence            999999982 235 7888999999999999999999998888875444                              45


Q ss_pred             hhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369          592 ESYAMLLDIFVSAGRWEDVAVVKNLTREEKL  622 (758)
Q Consensus       592 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  622 (758)
                      .+...++.++....+++.|++.|....+.+.
T Consensus       818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~  848 (913)
T KOG0495|consen  818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDP  848 (913)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            5677788889999999999999998876544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.58  E-value=1.4e-10  Score=124.57  Aligned_cols=540  Identities=11%  Similarity=0.073  Sum_probs=358.1

Q ss_pred             CCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHH
Q 004369           51 SEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQK  130 (758)
Q Consensus        51 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  130 (758)
                      .+|+.++|..++.+..+..+. +...|..|-..+-..|+.+++...+-.+.-. .+.|...|-.+-....+.|.++.|+-
T Consensus       151 arg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  151 ARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             HhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHH
Confidence            579999999999999988766 5578999999999999999887765444333 36677899999999999999999999


Q ss_pred             HHccCCCCCcchHHHH---HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHH----HHHHHhcccCChHHHHHHHHHHHH
Q 004369          131 VFDNLPRINVVSWTSL---ISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLG----TALTACSSLESIRLGKQIHAYVVK  203 (758)
Q Consensus       131 ~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~~~~~~a~~~~~~~~~  203 (758)
                      .|.+..+.++.-|-.+   ...|-+.|+...|.+.|.++.+.....|..-+.    .+++.+...++-+.|.+.++....
T Consensus       229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s  308 (895)
T KOG2076|consen  229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS  308 (895)
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            9999887555555544   356788999999999999998864322222222    234455566666888888777766


Q ss_pred             hC-CCCChhHHHHHHHHHhhcCChHHHHHHHhccCC--------------------------CCcchHHH----HHHHHh
Q 004369          204 YQ-TEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE--------------------------KNVMSWTT----VIGACG  252 (758)
Q Consensus       204 ~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--------------------------~~~~~~~~----li~~~~  252 (758)
                      .+ -..+...++.++.+|.+...++.|......+..                          ++..+|+.    +.-++.
T Consensus       309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~  388 (895)
T KOG2076|consen  309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV  388 (895)
T ss_pred             hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence            33 345567788899999999988888877655432                          12222221    112333


Q ss_pred             hCCChhhHHHHHHHHHHCC--CCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 004369          253 ENGEAVQGLRFFSKMLSEG--IQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEA  330 (758)
Q Consensus       253 ~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A  330 (758)
                      .....+...-+........  +.-+..-|.-+..++...|.+..|..++..+.......+..+|-.+..+|...|..+.|
T Consensus       389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A  468 (895)
T KOG2076|consen  389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA  468 (895)
T ss_pred             cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence            3333344444444444544  33455678889999999999999999999999887677788999999999999999999


Q ss_pred             HHHHccCCCCCeeec---hhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHh--------CCCCCCHHHHHHHHHHHh
Q 004369          331 QKLFDGMSHVNLVTW---NAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNS--------SGMKPDLYTFSSILTICS  399 (758)
Q Consensus       331 ~~~~~~m~~~~~~~~---~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~--------~g~~p~~~t~~~ll~a~~  399 (758)
                      ...|+.+..-++...   -+|-..+-+           .|+.++|++.+..|..        .+..|+..........+.
T Consensus       469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~-----------~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~  537 (895)
T KOG2076|consen  469 IEFYEKVLILAPDNLDARITLASLYQQ-----------LGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF  537 (895)
T ss_pred             HHHHHHHHhcCCCchhhhhhHHHHHHh-----------cCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence            999998876333333   344455666           9999999999998652        234455555555556667


Q ss_pred             cccchHHHHHHHHHHHHcC----------------------CCChHHHHhHHhhhHHhcCCHHHHHHHHHhc--------
Q 004369          400 RLVALEQGEQIHALTLKTG----------------------FLSDVVVGTALVNMYKKCGRIERASRVFVEM--------  449 (758)
Q Consensus       400 ~~~~~~~a~~i~~~~~~~~----------------------~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~--------  449 (758)
                      +.|+.++-..+-..++...                      ..........++.+-.+.++.....+-...-        
T Consensus       538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~  617 (895)
T KOG2076|consen  538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL  617 (895)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence            7777766554444333211                      1111122222333333333322222111110        


Q ss_pred             CCCChh----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHH--HH-HHHHHHHhccccHHHHHHHHHHhhhhcC
Q 004369          450 STRTLI----SWTSMITGFANHSLSHQALQLFEDMLLAGV--RPNQV--TF-VGALAACSNAGMVYEALGYFEMMQKEYK  520 (758)
Q Consensus       450 ~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~  520 (758)
                      ..-.+.    .+.-++..+++.++.++|+.+...+.+..+  .++..  .+ ...+.++...+++..|..++..|...++
T Consensus       618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~  697 (895)
T KOG2076|consen  618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ  697 (895)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence            011111    234567889999999999999998887542  22221  22 3345577789999999999999987644


Q ss_pred             CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHH--HHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369          521 IKPV---MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIA--GCRRHGNMELGFYAAEQLLKLKPKDCESY  594 (758)
Q Consensus       521 ~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  594 (758)
                      ...+   ...|++..+.+.+.|+-.-=..++... ...|+..-...++.  -....+.+.-|...+-++....|++|.+.
T Consensus       698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~n  777 (895)
T KOG2076|consen  698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLIN  777 (895)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHH
Confidence            4433   345676666666666654445555444 33333211122222  23456677889999999999999999988


Q ss_pred             HHHHHHhhh
Q 004369          595 AMLLDIFVS  603 (758)
Q Consensus       595 ~~l~~~~~~  603 (758)
                      ..|+-+|..
T Consensus       778 l~lglafih  786 (895)
T KOG2076|consen  778 LCLGLAFIH  786 (895)
T ss_pred             HHHHHHHHH
Confidence            888877753

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.57  E-value=1.6e-11  Score=130.61  Aligned_cols=533  Identities=14%  Similarity=0.055  Sum_probs=315.8

Q ss_pred             HHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCC
Q 004369           60 QEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRIN  139 (758)
Q Consensus        60 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~  139 (758)
                      +++..+...|+.|+.+||..++..|+..|+.+.|- +|..|.-...+.+..+++.++....+.++.+.+.       +|.
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~   82 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL   82 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence            34566778899999999999999999999999998 9999988888888899999999999999888776       677


Q ss_pred             cchHHHHHHHHHhCCCchHHHHHHHH-HH-------HcCCCCChhhHHHHHHHhcccC-C------hHHHHHHHHHHHHh
Q 004369          140 VVSWTSLISGYVQNSQPELAIHVFLD-ML-------EAGNYPTNVTLGTALTACSSLE-S------IRLGKQIHAYVVKY  204 (758)
Q Consensus       140 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~~~~~  204 (758)
                      ..+|..|..+|.++|+... ++..++ |.       ..|+.--..-|-..+.+|...- +      ..--+.+++..++.
T Consensus        83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl  161 (1088)
T KOG4318|consen   83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL  161 (1088)
T ss_pred             hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999998765 333333 22       1232211222222222222211 1      11123344444444


Q ss_pred             CCCCChhHHHHHHHHHhhc-----CChHHHHHHHhccCC-CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhh
Q 004369          205 QTEDDTSVGNSLCSLYSTC-----GSLNSAIKAFNRIRE-KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFT  278 (758)
Q Consensus       205 g~~~~~~~~~~Li~~y~~~-----g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  278 (758)
                      +....+..++.=...+.+.     ..+++-...-....+ ++..+|.+++..-.-+|+.+.|..++.+|.+.|++.+..-
T Consensus       162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy  241 (1088)
T KOG4318|consen  162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY  241 (1088)
T ss_pred             HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence            4211111111111111111     223333333333333 8899999999999999999999999999999999999988


Q ss_pred             HHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechh-HHHHHhhhch
Q 004369          279 LTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNA-MIAGHAQMMD  357 (758)
Q Consensus       279 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-li~~~~~~~~  357 (758)
                      |-.++-+   .++...++.+..-|...|+.|+..++..-+-.+.++|....+.+.    .+ ....+++ +..+.++ |.
T Consensus       242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----sq-~~hg~tAavrsaa~r-g~  312 (1088)
T KOG4318|consen  242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----SQ-LAHGFTAAVRSAACR-GL  312 (1088)
T ss_pred             chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----cc-hhhhhhHHHHHHHhc-cc
Confidence            8888766   788888999999999999999999998888777776653332221    11 1111111 1122221 00


Q ss_pred             hhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCC---CChHHHHhHHhhhHH
Q 004369          358 LAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGF---LSDVVVGTALVNMYK  434 (758)
Q Consensus       358 ~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~---~~~~~~~~~Li~~y~  434 (758)
                      ...+.+. .....-....+++..-.|+.-....|..... ....|.-+...++-+.+..--.   ..++..+..++    
T Consensus       313 ~a~k~l~-~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l----  386 (1088)
T KOG4318|consen  313 LANKRLR-QNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL----  386 (1088)
T ss_pred             HhHHHHH-HHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH----
Confidence            0000000 1111122222222222344333333322222 2335666666666665543211   11233333333    


Q ss_pred             hcCCHHHHHHHHHhcCCCChh-HHHHHHHHHHh---cCCHHHHHHHHHH------------HHH----cCCCC-------
Q 004369          435 KCGRIERASRVFVEMSTRTLI-SWTSMITGFAN---HSLSHQALQLFED------------MLL----AGVRP-------  487 (758)
Q Consensus       435 ~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~------------m~~----~g~~p-------  487 (758)
                              .+.|.+...+... .++ .-.+...   .....+..++...            ...    +-..|       
T Consensus       387 --------rqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~  457 (1088)
T KOG4318|consen  387 --------RQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHL  457 (1088)
T ss_pred             --------HHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhH
Confidence                    3344444333221 111 1111111   1111111111111            111    00111       


Q ss_pred             CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-----CCCCHHHHHH
Q 004369          488 NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMD-----FEPNEVIWSV  562 (758)
Q Consensus       488 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~  562 (758)
                      -...-+.++..|...-+..+++..-+.... +-+ |  ..|..||+.+....++++|..+.++..     +.-|..-+..
T Consensus       458 irdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~  533 (1088)
T KOG4318|consen  458 IRDIANQLHLTLNSEYNKLKILCDEEKYED-LLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTS  533 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHH
Confidence            112334555566666666666655444433 122 2  679999999999999999999999882     2335556788


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhcc---CCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeE
Q 004369          563 FIAGCRRHGNMELGFYAAEQLLKL---KPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSW  630 (758)
Q Consensus       563 ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~  630 (758)
                      +.+...+++....+..+.+.+.+.   .|.-......+.+.-+..|+.+...+.++.+...|+.. .|--|
T Consensus       534 l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~  603 (1088)
T KOG4318|consen  534 LQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW  603 (1088)
T ss_pred             HHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence            888889999888888888777653   34445666777888889999999999999999988866 34434

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.52  E-value=5.2e-14  Score=142.62  Aligned_cols=248  Identities=16%  Similarity=0.138  Sum_probs=114.7

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHH-HHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSIL-TICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASR  444 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~  444 (758)
                      .|++++|++++++.......|+...|..++ ..+...++.+.|.+.++.+...+.. +...+..++.. ...+++++|.+
T Consensus        21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~   98 (280)
T PF13429_consen   21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALK   98 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccc
Confidence            999999999997665543356665555544 4556788999999999999887533 66677788877 68899999999


Q ss_pred             HHHhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCC
Q 004369          445 VFVEMS--TRTLISWTSMITGFANHSLSHQALQLFEDMLLAG-VRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKI  521 (758)
Q Consensus       445 ~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~  521 (758)
                      ++...-  .++...+..++..+...|+++++.++++++.... .+++...|..+...+.+.|+.++|.+.+++..+.   
T Consensus        99 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---  175 (280)
T PF13429_consen   99 LAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---  175 (280)
T ss_dssp             -------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---
T ss_pred             ccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Confidence            988764  3466778889999999999999999999987643 3456777888888899999999999999999863   


Q ss_pred             CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 004369          522 KPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM--DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLL  598 (758)
Q Consensus       522 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  598 (758)
                      .|+ ......++..+...|+.+++.++++..  ....|...|..+..++...|+.++|...++++++.+|+|+.....++
T Consensus       176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a  255 (280)
T PF13429_consen  176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYA  255 (280)
T ss_dssp             -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccc
Confidence            454 778889999999999999988888777  22346678899999999999999999999999999999999999999


Q ss_pred             HHhhhCCCchhHHHHHHHhh
Q 004369          599 DIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       599 ~~~~~~g~~~~a~~~~~~m~  618 (758)
                      +++...|+.++|.+++...-
T Consensus       256 ~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  256 DALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHT----------------
T ss_pred             cccccccccccccccccccc
Confidence            99999999999999987764

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.8e-10  Score=115.11  Aligned_cols=213  Identities=11%  Similarity=0.100  Sum_probs=171.5

Q ss_pred             ccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004369          401 LVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLF  477 (758)
Q Consensus       401 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~  477 (758)
                      .|+.-.+.+-++.+++.... +...|--+..+|....+.++-...|++..   ..|..+|-.-...+.-.+++++|+.=|
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF  417 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF  417 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence            46777777888888876533 23336667778999999999999998876   346667777777777788999999999


Q ss_pred             HHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC
Q 004369          478 EDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP  555 (758)
Q Consensus       478 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p  555 (758)
                      ++.+.  +.|+ ...|..+-.+..+.+.++++...|+..+++  ++.-++.|+-....+...+++++|.+.|+.. .++|
T Consensus       418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~  493 (606)
T KOG0547|consen  418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP  493 (606)
T ss_pred             HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence            99987  5665 567888888888999999999999999884  4555788999999999999999999999987 5555


Q ss_pred             C---------HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          556 N---------EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       556 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +         ..+-..++-.- -.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|.++|+....
T Consensus       494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4         22222333322 338999999999999999999999999999999999999999999998653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=2.6e-10  Score=113.29  Aligned_cols=360  Identities=13%  Similarity=0.122  Sum_probs=234.0

Q ss_pred             CCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhH--HHH
Q 004369          205 QTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTL--TSI  282 (758)
Q Consensus       205 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~l  282 (758)
                      +...|.+.+-.....+-+.|....|...|......-+..|.+.+....-..+.+.+..+    .. |...|..-+  -.+
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M~~~F~  233 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----VV-GLPSDMHWMKKFFL  233 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHHHHHHH
Confidence            34455555555555666778888888888877765556666554432222222222111    11 111111111  112


Q ss_pred             HHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhch
Q 004369          283 SSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDD  362 (758)
Q Consensus       283 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~  362 (758)
                      ..++......+.+.+=.......|++.+...-+-...+.-.                                       
T Consensus       234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~---------------------------------------  274 (559)
T KOG1155|consen  234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYN---------------------------------------  274 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhh---------------------------------------
Confidence            33333344444444444444555544444333333333333                                       


Q ss_pred             hhcCCChhHHHHHHHHhHhCCC-C-CCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHH
Q 004369          363 LSAHNGGTEALSIFSKLNSSGM-K-PDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIE  440 (758)
Q Consensus       363 l~~~g~~~~A~~l~~~m~~~g~-~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~  440 (758)
                         +.++++|+.+|+++.+... + -|..+|+.++-.-.....+.--.+....+-    .--+.|...+.+-|+-.++.+
T Consensus       275 ---~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHE  347 (559)
T KOG1155|consen  275 ---QRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHE  347 (559)
T ss_pred             ---hhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHH
Confidence               4555666666666655421 1 144566655544332222211111111111    123456677788888899999


Q ss_pred             HHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369          441 RASRVFVEMSTR---TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK  517 (758)
Q Consensus       441 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  517 (758)
                      +|...|++..+-   -...|+.|..-|....+...|++-+++..+-. +-|...|-.|..+|.-.+...-|+-+|+++.+
T Consensus       348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~  426 (559)
T KOG1155|consen  348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE  426 (559)
T ss_pred             HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence            999999987744   44689999999999999999999999999842 44677999999999999999999999999875


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhc-------cCC
Q 004369          518 EYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLK-------LKP  588 (758)
Q Consensus       518 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p  588 (758)
                        -.+-|...|.+|.+.|.+.++++||++.|++.  .-+.+...+..|...+.+.++.++|.+.+++-++       .+|
T Consensus       427 --~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~  504 (559)
T KOG1155|consen  427 --LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD  504 (559)
T ss_pred             --cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence              33446889999999999999999999999998  2233668899999999999999999999999887       334


Q ss_pred             CCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369          589 KDCESYAMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       589 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                      .-..+..-|+.-+.+.++|++|..+-....
T Consensus       505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  505 ETIKARLFLAEYFKKMKDFDEASYYATLVL  534 (559)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence            334455568888999999999987655543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=5e-12  Score=131.34  Aligned_cols=268  Identities=17%  Similarity=0.186  Sum_probs=214.2

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcC--CCChHHHHhHHhhhHHhcCCHHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTG--FLSDVVVGTALVNMYKKCGRIERAS  443 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~  443 (758)
                      .-+..+|+..|.+... .+.-+......+..+|-..+++++++.+|+.+.+..  ...+..+|.+.+.-+-+.=.+..--
T Consensus       332 ~y~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La  410 (638)
T KOG1126|consen  332 QYNCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA  410 (638)
T ss_pred             HHHHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence            5566899999999443 344455777888899999999999999999998753  2235677777765544322222222


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCC
Q 004369          444 RVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRP-NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIK  522 (758)
Q Consensus       444 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~  522 (758)
                      +-+-.+.+..+.+|-++...|.-+++.+.|++.|++...  +.| ...+|+.+..-+.....+|.|...|+....     
T Consensus       411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----  483 (638)
T KOG1126|consen  411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----  483 (638)
T ss_pred             HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----
Confidence            222233345678999999999999999999999999987  677 478888888888888999999999987753     


Q ss_pred             CCHHHHHH---HHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369          523 PVMDHYMC---LIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML  597 (758)
Q Consensus       523 p~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  597 (758)
                      .|..+|++   |.-.|.|.++++.|+-.|+++ .+.| +.++...+...+.+.|+.|+|++++++++-++|.|+-.-...
T Consensus       484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~  563 (638)
T KOG1126|consen  484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR  563 (638)
T ss_pred             CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence            45567765   567789999999999999998 8888 677788888999999999999999999999999999999999


Q ss_pred             HHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHc
Q 004369          598 LDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCF  667 (758)
Q Consensus       598 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~  667 (758)
                      +.++...+++++|.+.+++.++                          .-|+...++..+..+.++|+..
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~--------------------------~vP~es~v~~llgki~k~~~~~  607 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKE--------------------------LVPQESSVFALLGKIYKRLGNT  607 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHH--------------------------hCcchHHHHHHHHHHHHHHccc
Confidence            9999999999999999999986                          3355666777777777777654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.45  E-value=5e-11  Score=117.42  Aligned_cols=447  Identities=13%  Similarity=0.105  Sum_probs=277.1

Q ss_pred             HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHH-HHhcccCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHh
Q 004369          147 ISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTAL-TACSSLESIRLGKQIHAYVVKYQTEDD----TSVGNSLCSLYS  221 (758)
Q Consensus       147 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~y~  221 (758)
                      ..-|..+....+|+..|+-+.+....||...+..-+ ..+.+.+.+..|...+..++..-...+    ..+.+.+.-.+.
T Consensus       208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi  287 (840)
T KOG2003|consen  208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI  287 (840)
T ss_pred             HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence            345666777888888888888877778766543322 235566667777777776665432222    223444555677


Q ss_pred             hcCChHHHHHHHhccCC--CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHH
Q 004369          222 TCGSLNSAIKAFNRIRE--KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVH  299 (758)
Q Consensus       222 ~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  299 (758)
                      +.|.+++|..-|+...+  ||..+--.||-.+.--|+.++..+.|.+|..--..||..-|..       .          
T Consensus       288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~-------~----------  350 (840)
T KOG2003|consen  288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK-------E----------  350 (840)
T ss_pred             ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC-------C----------
Confidence            77888888888877654  6655433344444556778888888888876544444443310       0          


Q ss_pred             HHHHHhCCCCchhHHHH-----HHHHHHhcCC--HHH----HHHHHccCCCCCee---echhH-H--HHHhhh---chhh
Q 004369          300 SLGIKLGYASNLRVRNS-----IMYLYLKCGL--VDE----AQKLFDGMSHVNLV---TWNAM-I--AGHAQM---MDLA  359 (758)
Q Consensus       300 ~~~~~~g~~~~~~~~~~-----li~~~~~~g~--~~~----A~~~~~~m~~~~~~---~~~~l-i--~~~~~~---~~~~  359 (758)
                            .-.|+....|-     .+.-.-+...  .++    |.++..-+..|+-.   -|..- +  +.++..   ....
T Consensus       351 ------~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~  424 (840)
T KOG2003|consen  351 ------KDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN  424 (840)
T ss_pred             ------cCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence                  00111111111     1111111111  111    11222222222211   11100 0  000000   0000


Q ss_pred             h-chhhcCCChhHHHHHHHHhHhCCCCCCHH--HHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhc
Q 004369          360 K-DDLSAHNGGTEALSIFSKLNSSGMKPDLY--TFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKC  436 (758)
Q Consensus       360 ~-~~l~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~  436 (758)
                      + ..+..+|+++.|+++++-.....-+.-..  +-..++.-...-.++..|.+.-+..+... .-+....+.-.+.-...
T Consensus       425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n  503 (840)
T KOG2003|consen  425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN  503 (840)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec
Confidence            0 11334999999999998887653332222  22223333333456666766666554432 12222222223334457


Q ss_pred             CCHHHHHHHHHhcCCCChhHHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 004369          437 GRIERASRVFVEMSTRTLISWTSMI---TGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFE  513 (758)
Q Consensus       437 g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  513 (758)
                      |++++|.+.+++....|..+-.+|.   -.+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++.
T Consensus       504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~  582 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM  582 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            9999999999999988776544443   3466789999999999888753 34456777888888999999999999998


Q ss_pred             HhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369          514 MMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKK-MDFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       514 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  591 (758)
                      +...  -++.|+...+.|.++|-+.|+-..|....-. ...-| +..+..-|..-|....-.+.+...++++--+.|+..
T Consensus       583 q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~  660 (840)
T KOG2003|consen  583 QANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS  660 (840)
T ss_pred             Hhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence            8764  5666789999999999999999999887544 34445 666766677777777778999999999999999876


Q ss_pred             hhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          592 ESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       592 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      .-...++.++.+.|++..|..+++.+..+
T Consensus       661 kwqlmiasc~rrsgnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK  689 (840)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            66677788889999999999999988754

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=1e-09  Score=109.23  Aligned_cols=250  Identities=12%  Similarity=0.118  Sum_probs=193.0

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCC--CChHHHHhHHhhhHHhcCCHHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGF--LSDVVVGTALVNMYKKCGRIERAS  443 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~Li~~y~~~g~~~~A~  443 (758)
                      ..+.++++.-.......|+.-+...-+....+.-...+++.|..+|+++.+...  -.|..+|+.++-.-..+.++.---
T Consensus       240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA  319 (559)
T KOG1155|consen  240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA  319 (559)
T ss_pred             HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence            345666776666666666555554444444455667788888888888887631  125667766653333323332222


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCC
Q 004369          444 RVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIK  522 (758)
Q Consensus       444 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~  522 (758)
                      ...-.+.+--+.|...+.+-|+-.++.++|...|++..+  +.|. ...|+.+..-|....+...|.+-++.+.+  -.+
T Consensus       320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p  395 (559)
T KOG1155|consen  320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INP  395 (559)
T ss_pred             HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCc
Confidence            222223333455666777788889999999999999998  4566 55677888899999999999999999975  334


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 004369          523 PVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDI  600 (758)
Q Consensus       523 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  600 (758)
                      .|-..|-.|..+|.-.+...-|+-+|++. .++| |...|.+|...|.+.++.++|+..+++++..+-.+...+..|+++
T Consensus       396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL  475 (559)
T KOG1155|consen  396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL  475 (559)
T ss_pred             hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            46788999999999999999999999999 8888 789999999999999999999999999999988888999999999


Q ss_pred             hhhCCCchhHHHHHHHhhh
Q 004369          601 FVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       601 ~~~~g~~~~a~~~~~~m~~  619 (758)
                      |-+.++.++|.+.+++-.+
T Consensus       476 ye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  476 YEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHhHHHHHHHHHHHHH
Confidence            9999999999999988765

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=7.2e-10  Score=113.11  Aligned_cols=248  Identities=15%  Similarity=0.051  Sum_probs=182.6

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRV  445 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~  445 (758)
                      .+++.+.++++....+.. ++....+..-|.++...|+-.+-..+-..+++. .|....+|-++.--|.-.|+..+|++.
T Consensus       257 ~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry  334 (611)
T KOG1173|consen  257 GCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRY  334 (611)
T ss_pred             cChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence            566666666666655531 223333333334445555544444443344443 355677788888888888999999999


Q ss_pred             HHhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCC
Q 004369          446 FVEMSTRT---LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIK  522 (758)
Q Consensus       446 ~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~  522 (758)
                      |.+...-|   ...|-.+...|+-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+.|.++|.++.   ++.
T Consensus       335 ~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~  410 (611)
T KOG1173|consen  335 FSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIA  410 (611)
T ss_pred             HHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcC
Confidence            98866443   368999999999999999999999887763 22222233334446888999999999999885   555


Q ss_pred             C-CHHHHHHHHHHHHHcCCHHHHHHHHHHc--------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369          523 P-VMDHYMCLIDMFVRLGCIEEAFDFIKKM--------DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE  592 (758)
Q Consensus       523 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  592 (758)
                      | |+..++-+.-+....+.+.+|...|+..        +..+ -..+|+.|..+|++.+.+++|+..+++++.+.|.++.
T Consensus       411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~  490 (611)
T KOG1173|consen  411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS  490 (611)
T ss_pred             CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence            5 4566676777777788899999988876        1112 3456899999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          593 SYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       593 ~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +|..++-+|...|+++.|...+.+..-
T Consensus       491 ~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  491 THASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            999999999999999999999998763

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=2.5e-08  Score=99.63  Aligned_cols=478  Identities=12%  Similarity=0.074  Sum_probs=299.2

Q ss_pred             CCChHHHHHHHccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHH
Q 004369          122 CGNMEEAQKVFDNLP---RINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIH  198 (758)
Q Consensus       122 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  198 (758)
                      .+++..|+.+|+...   .++...|---+..=.++.+...|..++++....=...|..-| --+-.=-..|++..|+++|
T Consensus        86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqif  164 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIF  164 (677)
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHH
Confidence            444555566665543   244455555555555666666666666655442111122211 1111223345666666666


Q ss_pred             HHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccC--CCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCCh
Q 004369          199 AYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIR--EKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNE  276 (758)
Q Consensus       199 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  276 (758)
                      +.-..  .+|+...|++.|++=.+...++.|+.++++..  .|++.+|--...-=.++|+...|..+|....+.  -.|.
T Consensus       165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d  240 (677)
T KOG1915|consen  165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDD  240 (677)
T ss_pred             HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhH
Confidence            66554  45666666666666666666667776666543  366666666666666666666666666665442  1122


Q ss_pred             hhHHHHHHHH----cccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHH--------HccCCCCCe
Q 004369          277 FTLTSISSVC----GTMLSLRVGAQVHSLGIKLGYASN--LRVRNSIMYLYLKCGLVDEAQKL--------FDGMSHVNL  342 (758)
Q Consensus       277 ~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~~~  342 (758)
                      ..-..++.++    .+....+.|.-++..++..- +.+  ...|..+...=-+.|+.....+.        ++.+...|+
T Consensus       241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np  319 (677)
T KOG1915|consen  241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP  319 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence            2222233333    33456677777777776653 222  34455555554555654333322        222223444


Q ss_pred             e---echhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHH-------HHHH---HHHHHhcccchHHHHH
Q 004369          343 V---TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLY-------TFSS---ILTICSRLVALEQGEQ  409 (758)
Q Consensus       343 ~---~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~---ll~a~~~~~~~~~a~~  409 (758)
                      .   +|--.+..-..           .|+.+...++|++.+.. ++|-..       .|.-   .+-.-....+++.+++
T Consensus       320 ~nYDsWfdylrL~e~-----------~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~  387 (677)
T KOG1915|consen  320 YNYDSWFDYLRLEES-----------VGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ  387 (677)
T ss_pred             CCchHHHHHHHHHHh-----------cCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            4   44444444444           89999999999999875 555221       1111   1112245678999999


Q ss_pred             HHHHHHHcCCCChHHHHhHHhhhHH----hcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004369          410 IHALTLKTGFLSDVVVGTALVNMYK----KCGRIERASRVFVEMS--TRTLISWTSMITGFANHSLSHQALQLFEDMLLA  483 (758)
Q Consensus       410 i~~~~~~~~~~~~~~~~~~Li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  483 (758)
                      ++...++. ++....++..+=-+|+    ++.++..|.+++....  .|-..++...|..-.+.++++.+..++++.++-
T Consensus       388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~  466 (677)
T KOG1915|consen  388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF  466 (677)
T ss_pred             HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            99988883 4556667776655665    5789999999998866  456677888888888999999999999999985


Q ss_pred             CCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHH
Q 004369          484 GVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSV  562 (758)
Q Consensus       484 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~  562 (758)
                      + +-|..+|.....-=...|+.+.|..+|+-+.....+......|.+.|+.=...|.+++|..++++. ...+...+|-+
T Consensus       467 ~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWis  545 (677)
T KOG1915|consen  467 S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWIS  545 (677)
T ss_pred             C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHh
Confidence            3 335677777777677889999999999999886555555677888899889999999999999998 55556668887


Q ss_pred             HHHHHH-----HcC-----------ChhHHHHHHHHHhcc----CCCC--chhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          563 FIAGCR-----RHG-----------NMELGFYAAEQLLKL----KPKD--CESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       563 ll~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +..--.     +.+           +...|..+|+++...    +|..  .......-++=...|...+...+-..|.+
T Consensus       546 FA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk  624 (677)
T KOG1915|consen  546 FAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK  624 (677)
T ss_pred             HHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence            765433     233           556788888887653    3321  12233344455666777777777777765

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=4.7e-11  Score=124.26  Aligned_cols=276  Identities=15%  Similarity=0.066  Sum_probs=208.9

Q ss_pred             CHHHHHHHHccCCC--CCee-echhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCC-C-CCCHHHHHHHHHHHhc
Q 004369          326 LVDEAQKLFDGMSH--VNLV-TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSG-M-KPDLYTFSSILTICSR  400 (758)
Q Consensus       326 ~~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g-~-~p~~~t~~~ll~a~~~  400 (758)
                      +..+|...|..++.  .|.. ....+..+|..           .+++++|.++|+...+.. . .-+...|.++|--+-+
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFE-----------l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~  402 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFE-----------LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD  402 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence            35677777777554  3332 12334556666           778888888888876642 1 1255677777655432


Q ss_pred             ccchHHHHHHH-HHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCCHHHHHHH
Q 004369          401 LVALEQGEQIH-ALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRT---LISWTSMITGFANHSLSHQALQL  476 (758)
Q Consensus       401 ~~~~~~a~~i~-~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~  476 (758)
                      .    -+...+ ..+++. -+..+.+|.++.+.|.-.++.+.|++.|++..+-|   ..+|+.+..-+.....+|.|...
T Consensus       403 ~----v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~  477 (638)
T KOG1126|consen  403 E----VALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKS  477 (638)
T ss_pred             h----HHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHH
Confidence            1    122222 222222 25568899999999999999999999999987554   46788888888888999999999


Q ss_pred             HHHHHHcCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CC
Q 004369          477 FEDMLLAGVRPNQ-VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DF  553 (758)
Q Consensus       477 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~  553 (758)
                      |+..+.  +.|.. ..|..+...|.+.++++.|.-.|+.+.   .+.|. .....++...+-+.|+.|+|+.+++++ -.
T Consensus       478 fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l  552 (638)
T KOG1126|consen  478 FRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL  552 (638)
T ss_pred             HHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence            999875  45553 467778889999999999999999986   46665 566778888999999999999999998 55


Q ss_pred             CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369          554 EP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL  622 (758)
Q Consensus       554 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  622 (758)
                      +| |+..--.-+..+...+++++|++.++++.++-|++..+|..++.+|.+.|+.+.|..-+..+.+.+.
T Consensus       553 d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  553 DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP  622 (638)
T ss_pred             CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence            55 5544445566667789999999999999999999999999999999999999999998888876443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=2.9e-09  Score=106.10  Aligned_cols=416  Identities=12%  Similarity=0.143  Sum_probs=285.6

Q ss_pred             hcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHH
Q 004369          222 TCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQV  298 (758)
Q Consensus       222 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  298 (758)
                      ..+++..|+.+|+....   ++...|---+..=.++.+...|..++++....=...|..=| --+-.=-..|++..|.++
T Consensus        85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915|consen   85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence            44667778888877765   56667777777777788888888888877654222232211 122223345788888888


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC--CCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHH
Q 004369          299 HSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMS--HVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIF  376 (758)
Q Consensus       299 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~  376 (758)
                      |+.-.+  ..|+...|++.|+.=.+-..++.|+.++++..  .|++.+|--...--.+           +|+..-|..+|
T Consensus       164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k-----------~g~~~~aR~Vy  230 (677)
T KOG1915|consen  164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEK-----------HGNVALARSVY  230 (677)
T ss_pred             HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHh-----------cCcHHHHHHHH
Confidence            887665  47888888888888888888888888888754  4777777655554445           78888888888


Q ss_pred             HHhHhC-CC-CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCh--HHHHhHHhhhHHhcCCHHHHHHHH------
Q 004369          377 SKLNSS-GM-KPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSD--VVVGTALVNMYKKCGRIERASRVF------  446 (758)
Q Consensus       377 ~~m~~~-g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~Li~~y~~~g~~~~A~~~~------  446 (758)
                      ....+. |- .-+...|.+...--.+...++.|.-++...++.- +.+  ...|..+...--+-|+.....++.      
T Consensus       231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~  309 (677)
T KOG1915|consen  231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF  309 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence            776652 10 1122233333333345667888888998888752 333  456666666555666655444432      


Q ss_pred             --HhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---hccccHHHHHHH
Q 004369          447 --VEMSTR---TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ-------VTFVGALAAC---SNAGMVYEALGY  511 (758)
Q Consensus       447 --~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~  511 (758)
                        +.+...   |-.+|--.+..-...|+.+...++|++.... ++|-.       ..|.-+=-+|   ....+++.+.++
T Consensus       310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v  388 (677)
T KOG1915|consen  310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV  388 (677)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence              222233   4467777777777889999999999999875 56632       1222222222   346788999999


Q ss_pred             HHHhhhhcCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhcc
Q 004369          512 FEMMQKEYKIKPVMDHYMCLIDMFV----RLGCIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKL  586 (758)
Q Consensus       512 ~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  586 (758)
                      ++...+  -++....++..+--+|+    |+-++..|.+++..+ |.-|-..++...|..-.+.++++....++++.++-
T Consensus       389 yq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~  466 (677)
T KOG1915|consen  389 YQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF  466 (677)
T ss_pred             HHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            998876  45555666666655554    778999999999887 88899999999999889999999999999999999


Q ss_pred             CCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHH
Q 004369          587 KPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDE  659 (758)
Q Consensus       587 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~  659 (758)
                      .|.+..++...+..=...|+++.|..+++...++.....|..-|-.    -.-|......+..+..+|..|.+
T Consensus       467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka----YIdFEi~~~E~ekaR~LYerlL~  535 (677)
T KOG1915|consen  467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA----YIDFEIEEGEFEKARALYERLLD  535 (677)
T ss_pred             ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH----hhhhhhhcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887655555554411    11333333445555666655443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.38  E-value=2.8e-10  Score=120.77  Aligned_cols=225  Identities=11%  Similarity=-0.008  Sum_probs=146.6

Q ss_pred             HHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHH
Q 004369          318 MYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSI  394 (758)
Q Consensus       318 i~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l  394 (758)
                      ...+...|+++.|...++++.+   .+......+...|.+           .|++++|++++..+.+.+..++. .+..+
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-----------~gdw~~a~~~l~~l~k~~~~~~~-~~~~l  227 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-----------TGAWSSLLDILPSMAKAHVGDEE-HRAML  227 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----------HHhHHHHHHHHHHHHHcCCCCHH-HHHHH
Confidence            5566677777777777777654   233445566667777           78888888888888776543222 11100


Q ss_pred             HHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHH
Q 004369          395 LTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSH  471 (758)
Q Consensus       395 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~  471 (758)
                      -.                           .+|..++....+..+.+...++++.++   +.++.....+..++...|+.+
T Consensus       228 ~~---------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~  280 (398)
T PRK10747        228 EQ---------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHD  280 (398)
T ss_pred             HH---------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHH
Confidence            00                           011111111222233444555555554   346667777788888888888


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369          472 QALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM  551 (758)
Q Consensus       472 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  551 (758)
                      +|.+++++..+.  .||...  .++.+....++.+++.+..+...+.  .+-|...+.++..++.+.|++++|.+.|++.
T Consensus       281 ~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a  354 (398)
T PRK10747        281 TAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAA  354 (398)
T ss_pred             HHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            888888887773  444421  1233344558888888888888763  3334566778888888888888888888887


Q ss_pred             -CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369          552 -DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK  587 (758)
Q Consensus       552 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  587 (758)
                       ...|+...+..|...+.+.|+.++|.+++++.+.+-
T Consensus       355 l~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        355 LKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence             777888888888888888888888888888887653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.36  E-value=2.2e-12  Score=130.82  Aligned_cols=251  Identities=14%  Similarity=0.195  Sum_probs=109.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHcc-CCC----CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHH
Q 004369          316 SIMYLYLKCGLVDEAQKLFDG-MSH----VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYT  390 (758)
Q Consensus       316 ~li~~~~~~g~~~~A~~~~~~-m~~----~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t  390 (758)
                      .+..++.+.|++++|.++++. +..    .|..-|..+......           .+++++|...++++...+.. +...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~-----------~~~~~~A~~ay~~l~~~~~~-~~~~   80 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS-----------LGDYDEAIEAYEKLLASDKA-NPQD   80 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc-----------cccccccccccccccccccc-cccc
Confidence            456777788888888888853 222    234445444444444           78888888888888775432 4445


Q ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHH
Q 004369          391 FSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS-----TRTLISWTSMITGFA  465 (758)
Q Consensus       391 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~  465 (758)
                      +..++.. ...+++++|.++.....+..  ++...+..++..|.+.|+++++.++++.+.     +.+...|..+...+.
T Consensus        81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  157 (280)
T PF13429_consen   81 YERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE  157 (280)
T ss_dssp             ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred             ccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            5555555 67788888888876665542  456667778888999999999999988854     346778889999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004369          466 NHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA  544 (758)
Q Consensus       466 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A  544 (758)
                      +.|+.++|++.+++..+.  .|+ ......++..+...|+.+++.++++...+.  .+.+...+..+..+|...|+.++|
T Consensus       158 ~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~A  233 (280)
T PF13429_consen  158 QLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEA  233 (280)
T ss_dssp             HCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred             HcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccc
Confidence            999999999999999984  665 667888999999999999999999988774  255566788999999999999999


Q ss_pred             HHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369          545 FDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLK  585 (758)
Q Consensus       545 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  585 (758)
                      +..+++. ...| |..+...+..++...|+.++|.++.+++++
T Consensus       234 l~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  234 LEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999998 5456 777788999999999999999999888765

>TIGR00540 hemY_coli hemY protein

Probab=99.35  E-value=1.6e-09  Score=115.76  Aligned_cols=286  Identities=12%  Similarity=0.010  Sum_probs=143.1

Q ss_pred             hCCChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004369          253 ENGEAVQGLRFFSKMLSEGIQPNEF-TLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQ  331 (758)
Q Consensus       253 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~  331 (758)
                      ..|+++.|.+.+.+..+.  .|+.. .+.....+....|+.+.+.+.+..+.+....+...+.-.....+...       
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~-------  166 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ-------  166 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC-------
Confidence            467777777777766553  23322 22233344444555555555555554432111112222234444444       


Q ss_pred             HHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHH
Q 004369          332 KLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIH  411 (758)
Q Consensus       332 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~  411 (758)
                                                         |++++|+..++.+.+.. +-+...+..+...+...|+++.+.+.+
T Consensus       167 -----------------------------------~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l  210 (409)
T TIGR00540       167 -----------------------------------NELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDII  210 (409)
T ss_pred             -----------------------------------CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                                               44444444444444432 112233444444445555555555555


Q ss_pred             HHHHHcCCCChHHH-------HhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004369          412 ALTLKTGFLSDVVV-------GTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDML  481 (758)
Q Consensus       412 ~~~~~~~~~~~~~~-------~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  481 (758)
                      ....+.+..+....       +..+++.-......+...+.++..+.   .++..+..+...+...|+.++|++++++..
T Consensus       211 ~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l  290 (409)
T TIGR00540       211 DNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL  290 (409)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            54444433222111       11111111112223344444555442   366777777788888888888888888877


Q ss_pred             HcCCCCCHHHH---HHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--c-CCCC
Q 004369          482 LAGVRPNQVTF---VGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKK--M-DFEP  555 (758)
Q Consensus       482 ~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p  555 (758)
                      +.  .||....   ..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|++  . ...|
T Consensus       291 ~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p  368 (409)
T TIGR00540       291 KK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL  368 (409)
T ss_pred             hh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC
Confidence            74  3443311   1111122234556666666666554332223224445666666666666666666663  2 4456


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369          556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLK  585 (758)
Q Consensus       556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  585 (758)
                      |...+..+...+.+.|+.++|.+++++.+.
T Consensus       369 ~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       369 DANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            666666666666666666666666666543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.35  E-value=2.6e-09  Score=113.40  Aligned_cols=244  Identities=12%  Similarity=0.027  Sum_probs=177.1

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHH--HHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFS--SILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERAS  443 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~  443 (758)
                      .|++++|...|.++.+.  .|+.....  .....+...|+.+.|...++.+.+.. +.+..+...+...|.+.|++++|.
T Consensus       131 ~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        131 RGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             CCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence            67777777777776653  44433222  22345566677777777777776654 456677777888888888888888


Q ss_pred             HHHHhcCCCCh-----------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 004369          444 RVFVEMSTRTL-----------ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYF  512 (758)
Q Consensus       444 ~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  512 (758)
                      +++..+.+...           ..|..++.......+.+...++++.+-+. .+.+......+..++...|+.++|.+.+
T Consensus       208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L  286 (398)
T PRK10747        208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQII  286 (398)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            77777763321           13444444444455566667777766443 3446778888889999999999999999


Q ss_pred             HHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369          513 EMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD  590 (758)
Q Consensus       513 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  590 (758)
                      +...+   ..|+....  ++......++.+++++.+++. ...| |...+..+...|...+++++|.+.++++++..|++
T Consensus       287 ~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~  361 (398)
T PRK10747        287 LDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA  361 (398)
T ss_pred             HHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence            98865   34554322  233334559999999999988 6667 55668899999999999999999999999999985


Q ss_pred             chhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          591 CESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       591 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                       ..+..|+.++.+.|+.++|.+.++.-..
T Consensus       362 -~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        362 -YDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             6678999999999999999999987654

>TIGR00540 hemY_coli hemY protein

Probab=99.33  E-value=6.9e-10  Score=118.56  Aligned_cols=283  Identities=11%  Similarity=0.039  Sum_probs=192.1

Q ss_pred             hhcCChHHHHHHHhccCC--CCcc-hHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChh--hHHHHHHHHcccCChHHH
Q 004369          221 STCGSLNSAIKAFNRIRE--KNVM-SWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEF--TLTSISSVCGTMLSLRVG  295 (758)
Q Consensus       221 ~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a  295 (758)
                      ...|+++.|++.+.+..+  |+.. .+-.....+.+.|+++.|.+.|.+..+..  |+..  .-..........|+++.|
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence            367999999999988766  3322 23334466778899999999999987643  5543  333346677788999999


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHH
Q 004369          296 AQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSI  375 (758)
Q Consensus       296 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l  375 (758)
                      .+.++.+.+.. +.+..+...+...|.+.|++++|.+.+..+.+.                                   
T Consensus       173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-----------------------------------  216 (409)
T TIGR00540       173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-----------------------------------  216 (409)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-----------------------------------
Confidence            99999999886 556677778888888877777777776666542                                   


Q ss_pred             HHHhHhCCCCCCHHHHHHHHHHH---hcccchHHHHHHHHHHHHcC---CCChHHHHhHHhhhHHhcCCHHHHHHHHHhc
Q 004369          376 FSKLNSSGMKPDLYTFSSILTIC---SRLVALEQGEQIHALTLKTG---FLSDVVVGTALVNMYKKCGRIERASRVFVEM  449 (758)
Q Consensus       376 ~~~m~~~g~~p~~~t~~~ll~a~---~~~~~~~~a~~i~~~~~~~~---~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~  449 (758)
                             ++.+.......-..+.   ...+..+.+.+.+..+.+..   .+.+...+..++..+...|+.++|.+++++.
T Consensus       217 -------~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~  289 (409)
T TIGR00540       217 -------GLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG  289 (409)
T ss_pred             -------CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence                   1111110000000000   01111111222222222221   1236778888888999999999999999887


Q ss_pred             CCC--ChhH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccccHHHHHHHHHHhhhhcCC
Q 004369          450 STR--TLIS---WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ---VTFVGALAACSNAGMVYEALGYFEMMQKEYKI  521 (758)
Q Consensus       450 ~~~--~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~  521 (758)
                      .+.  |...   +..........++.+.+++.+++..+.  .|+.   ....++...|.+.|++++|.++|+.... +..
T Consensus       290 l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~  366 (409)
T TIGR00540       290 LKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKE  366 (409)
T ss_pred             HhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhc
Confidence            643  3221   122222334457888999999888874  5654   4556788899999999999999995433 356


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369          522 KPVMDHYMCLIDMFVRLGCIEEAFDFIKKM  551 (758)
Q Consensus       522 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  551 (758)
                      .|+...+..+...+.+.|+.++|.+++++.
T Consensus       367 ~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       367 QLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            799998999999999999999999999874

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.32  E-value=5.6e-07  Score=93.57  Aligned_cols=446  Identities=13%  Similarity=0.141  Sum_probs=259.2

Q ss_pred             hHHHHHHHhhcCCCcHHHHHHHHHHHHh-CCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCC
Q 004369           76 SYVSLLQECVNRKSLSNAEIIHAHIVKT-GSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNS  154 (758)
Q Consensus        76 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g  154 (758)
                      .|..-++.....|++..-+..|+..+.. .+.....+|...+...-..|-++-+.+++++..+-++..-+--|.-++..+
T Consensus       104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d  183 (835)
T KOG2047|consen  104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD  183 (835)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            3444455555666666666777666543 222334566666666666777777777777766656666677777777788


Q ss_pred             CchHHHHHHHHHHHcC------CCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCC--CCC--hhHHHHHHHHHhhcC
Q 004369          155 QPELAIHVFLDMLEAG------NYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQT--EDD--TSVGNSLCSLYSTCG  224 (758)
Q Consensus       155 ~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~Li~~y~~~g  224 (758)
                      ++++|.+.+.......      .+-+...|.-+-...++..+.-....+ +.+++.|+  -+|  ...|.+|.+.|.+.|
T Consensus       184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g  262 (835)
T KOG2047|consen  184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSG  262 (835)
T ss_pred             chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence            8888777777665321      122334454444444444333322222 22333332  233  357899999999999


Q ss_pred             ChHHHHHHHhccCCC--CcchHHHHHHHHhhC----------------CC------hhhHHHHHHHHHHCCC--------
Q 004369          225 SLNSAIKAFNRIREK--NVMSWTTVIGACGEN----------------GE------AVQGLRFFSKMLSEGI--------  272 (758)
Q Consensus       225 ~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~l~~~m~~~g~--------  272 (758)
                      .++.|..+|++..+.  .+.-++.+.++|++-                |+      ++-.+.-|+.+...+.        
T Consensus       263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL  342 (835)
T KOG2047|consen  263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL  342 (835)
T ss_pred             hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence            999999999876652  222333333333321                11      1222233333332210        


Q ss_pred             C---CChhhHHHHHHHHcccCChHHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeee
Q 004369          273 Q---PNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLG-----YASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVT  344 (758)
Q Consensus       273 ~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  344 (758)
                      .   -+..++..-..  ...|+..+-...+.++++.-     ...-...|..+.+.|-..|+++.|+.+|++..+-+-.+
T Consensus       343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~  420 (835)
T KOG2047|consen  343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT  420 (835)
T ss_pred             hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence            0   11111211111  22345556666677766542     11233578889999999999999999999987744444


Q ss_pred             chhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCC----------CCC-------CHHHHHHHHHHHhcccchHHH
Q 004369          345 WNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSG----------MKP-------DLYTFSSILTICSRLVALEQG  407 (758)
Q Consensus       345 ~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g----------~~p-------~~~t~~~ll~a~~~~~~~~~a  407 (758)
                      -+-|-..++.-+...-    ...+++.|+++.+.....-          -.|       +...+...+..-...|-++..
T Consensus       421 v~dLa~vw~~waemEl----rh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest  496 (835)
T KOG2047|consen  421 VEDLAEVWCAWAEMEL----RHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST  496 (835)
T ss_pred             hHHHHHHHHHHHHHHH----hhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence            3334444433222111    1778889998887764321          111       112233344444556778888


Q ss_pred             HHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC----CCCh-hHHHHHHHHHHh---cCCHHHHHHHHHH
Q 004369          408 EQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS----TRTL-ISWTSMITGFAN---HSLSHQALQLFED  479 (758)
Q Consensus       408 ~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~  479 (758)
                      +.+++.+++..+..-..+.| ..-.+-...-++++.+++++-.    -|++ ..||+.+.-+.+   ....+.|..+|++
T Consensus       497 k~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq  575 (835)
T KOG2047|consen  497 KAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ  575 (835)
T ss_pred             HHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            88999998876543333322 2223445667899999998855    3454 478887766654   2458999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHH--hccccHHHHHHHHHHhhhhcCCCCC--HHHHHHHH
Q 004369          480 MLLAGVRPNQVTFVGALAAC--SNAGMVYEALGYFEMMQKEYKIKPV--MDHYMCLI  532 (758)
Q Consensus       480 m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li  532 (758)
                      .++ |.+|...-+.-|+-|-  .+-|....|..+++++..  ++++.  ...|+..|
T Consensus       576 aL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I  629 (835)
T KOG2047|consen  576 ALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYI  629 (835)
T ss_pred             HHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence            999 7777765444444332  235778888888888765  44443  23455444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.32  E-value=3.8e-10  Score=111.14  Aligned_cols=199  Identities=11%  Similarity=0.030  Sum_probs=167.7

Q ss_pred             CChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004369          420 LSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGAL  496 (758)
Q Consensus       420 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  496 (758)
                      ......+..+...|.+.|++++|.+.|++..   +.+...|..+...|...|++++|++.+++..+.. +.+...+..+.
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~  106 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG  106 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence            3346677888999999999999999999865   3356788889999999999999999999998853 33456777788


Q ss_pred             HHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChh
Q 004369          497 AACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNME  574 (758)
Q Consensus       497 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~  574 (758)
                      ..+...|++++|.+.++.+.+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++
T Consensus       107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence            8899999999999999999763222334567778899999999999999999988 5455 4667888999999999999


Q ss_pred             HHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          575 LGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       575 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +|...++++++..|.++..+..++.++...|++++|..+.+.+.+
T Consensus       187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            999999999999888888899999999999999999999887754

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.26  E-value=1.1e-08  Score=109.47  Aligned_cols=477  Identities=13%  Similarity=0.046  Sum_probs=231.3

Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCC----CcchHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 004369           95 IIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRI----NVVSWTSLISGYVQNSQPELAIHVFLDMLEAG  170 (758)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  170 (758)
                      .++..+...|+.|+..+|.+||.-||..|+++.|- +|.-|.-+    +...++.++.+..+.++.+.+.          
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            35566778899999999999999999999999999 89888754    3456899999998999888775          


Q ss_pred             CCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC-C-CcchHHHHH
Q 004369          171 NYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE-K-NVMSWTTVI  248 (758)
Q Consensus       171 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~-~~~~~~~li  248 (758)
                       .|-..||..++.+|...||+..-..+-+.+.            .++..++..|--..-..++-.+.- | -...-...|
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~i  146 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAI  146 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchHHHHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHH
Confidence             6889999999999999999765222211111            111222233333333333322211 0 000011122


Q ss_pred             HHHhhCCChhhHHHHHHHHHHCC-CCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 004369          249 GACGENGEAVQGLRFFSKMLSEG-IQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLV  327 (758)
Q Consensus       249 ~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  327 (758)
                      .-....|-++.+++++..|.... ..|-.+    +++-+...  ..-.+++.......--.++..++.++++.-...|++
T Consensus       147 lllv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~  220 (1088)
T KOG4318|consen  147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDV  220 (1088)
T ss_pred             HHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCch
Confidence            22233344444444444332210 001111    12222211  111222222222111134555555555555555555


Q ss_pred             HHHHHHHccCCCCCe----eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccc
Q 004369          328 DEAQKLFDGMSHVNL----VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVA  403 (758)
Q Consensus       328 ~~A~~~~~~m~~~~~----~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~  403 (758)
                      +.|..++.+|.+...    .-+-.++-+              .+...-+..+++-|++.|+.|+..|+.-.+..|...|.
T Consensus       221 d~Ak~ll~emke~gfpir~HyFwpLl~g--------------~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG--------------INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             hhHHHHHHHHHHcCCCcccccchhhhhc--------------CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            555555555544211    111122222              34444555566666666666666666665555555333


Q ss_pred             hHHHHHHH-----------HHH----------------------H---HcCCCChHHHHhHHhhhHHhcCCHHHHHHHHH
Q 004369          404 LEQGEQIH-----------ALT----------------------L---KTGFLSDVVVGTALVNMYKKCGRIERASRVFV  447 (758)
Q Consensus       404 ~~~a~~i~-----------~~~----------------------~---~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~  447 (758)
                      ...+....           ..+                      .   -.|+.....+|...+.. ...|+-++.+++-.
T Consensus       287 t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg  365 (1088)
T KOG4318|consen  287 TKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVG  365 (1088)
T ss_pred             hhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHh
Confidence            22111100           000                      0   01222222222221111 11344444444444


Q ss_pred             hcCCC-------ChhHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhh-
Q 004369          448 EMSTR-------TLISWTSMITGFANHSLSH--QALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK-  517 (758)
Q Consensus       448 ~~~~~-------~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-  517 (758)
                      .+..+       ++..|..++.-|.+.-+..  +-.....+......  +... +-.+.-|...-+...+.+-+..... 
T Consensus       366 ~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l--~se~-tp~vsell~~lrkns~lr~lv~Lss~  442 (1088)
T KOG4318|consen  366 QLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNL--NSED-TPRVSELLENLRKNSFLRQLVGLSST  442 (1088)
T ss_pred             hhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh--chhh-hHHHHHHHHHhCcchHHHHHhhhhHH
Confidence            44322       2233333333322211100  00000001000000  0000 0000000000011111111111100 


Q ss_pred             --hcCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCC
Q 004369          518 --EYKIKP-------VMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKP  588 (758)
Q Consensus       518 --~~~~~p-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  588 (758)
                        .....|       -...-+.++..+++.-+..+++...++..-.-=...|..|+.-|..+...+.|....++....+.
T Consensus       443 Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~  522 (1088)
T KOG4318|consen  443 ELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDE  522 (1088)
T ss_pred             HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccch
Confidence              001111       11233456667777777777776555541111125688999999999999999999888876542


Q ss_pred             C---CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          589 K---DCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       589 ~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      .   +..-+..+.+.+.+.+...++.++.+.+++
T Consensus       523 s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks  556 (1088)
T KOG4318|consen  523 SIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS  556 (1088)
T ss_pred             hhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence            2   456788899999999999999999999886

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.24  E-value=2.1e-08  Score=98.65  Aligned_cols=287  Identities=13%  Similarity=0.059  Sum_probs=194.6

Q ss_pred             CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004369          254 NGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKL  333 (758)
Q Consensus       254 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~  333 (758)
                      .|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-++..++-+.--.++..+.-+........|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            688888888888866665443 3345566666777788888888888877765466667777777777777877777766


Q ss_pred             HccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHH
Q 004369          334 FDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQI  410 (758)
Q Consensus       334 ~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i  410 (758)
                      .+++.+   .++.........|.+           .|++.+.+.++.+|.+.|+--|...-.                 +
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~-----------~g~~~~ll~~l~~L~ka~~l~~~e~~~-----------------l  227 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIR-----------LGAWQALLAILPKLRKAGLLSDEEAAR-----------------L  227 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHccCCChHHHHH-----------------H
Confidence            665433   455566667777777           777888888888777776544432110                 0


Q ss_pred             HHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004369          411 HALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRP  487 (758)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  487 (758)
                                 ...+++.+++-....+..+.-...++..+   +.++..-.+++.-+.+.|+.++|.++.++..+.+..|
T Consensus       228 -----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~  296 (400)
T COG3071         228 -----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP  296 (400)
T ss_pred             -----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence                       11223333333333333333344555554   3355566667777788888888888888888877777


Q ss_pred             CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 004369          488 NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIAG  566 (758)
Q Consensus       488 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~  566 (758)
                      +..+    +-.+.+.++...-.+..+...+.++..|  ..+.+|...|.+.+.+.+|.+.|+.. ...|+..+|+-+..+
T Consensus       297 ~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~  370 (400)
T COG3071         297 RLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADA  370 (400)
T ss_pred             hHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence            6222    2245667777777777777666555555  66778888888888888888888876 778888888888888


Q ss_pred             HHHcCChhHHHHHHHHHhcc
Q 004369          567 CRRHGNMELGFYAAEQLLKL  586 (758)
Q Consensus       567 ~~~~g~~~~a~~~~~~~~~~  586 (758)
                      +.+.|+.++|.+..++.+.+
T Consensus       371 ~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         371 LDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHcCChHHHHHHHHHHHHH
Confidence            88888888888888777643

>PF13041 PPR_2: PPR repeat family

Probab=99.24  E-value=1.7e-11  Score=86.88  Aligned_cols=50  Identities=22%  Similarity=0.464  Sum_probs=48.1

Q ss_pred             CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcc
Q 004369          239 KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGT  288 (758)
Q Consensus       239 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~  288 (758)
                      ||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999999874

>PF13041 PPR_2: PPR repeat family

Probab=99.23  E-value=2.9e-11  Score=85.72  Aligned_cols=50  Identities=20%  Similarity=0.503  Sum_probs=47.2

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 004369          452 RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN  501 (758)
Q Consensus       452 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  501 (758)
                      ||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            68899999999999999999999999999999999999999999999875

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.3e-07  Score=93.02  Aligned_cols=309  Identities=11%  Similarity=-0.003  Sum_probs=216.2

Q ss_pred             CChhhHHHHHHHHcc--cCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHH
Q 004369          274 PNEFTLTSISSVCGT--MLSLRVGAQVHSLGIKL-GYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIA  350 (758)
Q Consensus       274 p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~  350 (758)
                      |+..+....+.+++.  .++-..+.+.+..+.+. -++.|+....++.+.|...|+.++|...|++...-|+.+...| .
T Consensus       192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M-D  270 (564)
T KOG1174|consen  192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM-D  270 (564)
T ss_pred             CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH-H
Confidence            333444444444433  34444455555555433 4788899999999999999999999999998876555544433 1


Q ss_pred             HHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHh
Q 004369          351 GHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALV  430 (758)
Q Consensus       351 ~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li  430 (758)
                      .|+-.       |...|+.+..-.+...+.... +-....+..-....-..++.+.|..+-+..++.. +.+...+-.-.
T Consensus       271 ~Ya~L-------L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG  341 (564)
T KOG1174|consen  271 LYAVL-------LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKG  341 (564)
T ss_pred             HHHHH-------HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhcc
Confidence            12111       111788888877777776532 1122222222333345567777777777776643 22344444445


Q ss_pred             hhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhc-cccH
Q 004369          431 NMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGAL-AACSN-AGMV  505 (758)
Q Consensus       431 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~  505 (758)
                      ..+...|+.++|.-.|+...   .-+..+|..|+..|...|+..+|..+-+...+. +..+..+...+. ..|.. ..--
T Consensus       342 ~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r  420 (564)
T KOG1174|consen  342 RLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR  420 (564)
T ss_pred             HHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence            56677899999999998755   347899999999999999999999988876654 444566655552 34433 3345


Q ss_pred             HHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369          506 YEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQL  583 (758)
Q Consensus       506 ~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  583 (758)
                      ++|.+++++..   .+.|+ ....+.+...+.+.|+.+++..++++. ...||....+.|...++..+.+++|...|..+
T Consensus       421 EKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A  497 (564)
T KOG1174|consen  421 EKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA  497 (564)
T ss_pred             HHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            78888888764   56777 556778889999999999999999998 77789999999999999999999999999999


Q ss_pred             hccCCCCchhHHH
Q 004369          584 LKLKPKDCESYAM  596 (758)
Q Consensus       584 ~~~~p~~~~~~~~  596 (758)
                      +.++|++..+...
T Consensus       498 Lr~dP~~~~sl~G  510 (564)
T KOG1174|consen  498 LRQDPKSKRTLRG  510 (564)
T ss_pred             HhcCccchHHHHH
Confidence            9999998554433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.20  E-value=6.9e-09  Score=109.59  Aligned_cols=232  Identities=16%  Similarity=0.182  Sum_probs=178.5

Q ss_pred             CHHHHHHHHHHHhcccchHHHHHHHHHHHHc-----CC-CChH-HHHhHHhhhHHhcCCHHHHHHHHHhcCC--------
Q 004369          387 DLYTFSSILTICSRLVALEQGEQIHALTLKT-----GF-LSDV-VVGTALVNMYKKCGRIERASRVFVEMST--------  451 (758)
Q Consensus       387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~Li~~y~~~g~~~~A~~~~~~~~~--------  451 (758)
                      -..|...+...|...|+++.|..++...++.     |. .|.+ ...+.+...|...+++++|..+|+++..        
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~  277 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE  277 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            3356677888999999999999999887764     21 2232 2344577889999999999999988651        


Q ss_pred             CC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCC-CC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcC-
Q 004369          452 RT---LISWTSMITGFANHSLSHQALQLFEDMLL-----AGVR-PN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYK-  520 (758)
Q Consensus       452 ~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-  520 (758)
                      .+   ..+++.|..+|.+.|++++|...+++..+     .|.. |. ..-++.+...|...+.+++|..++....+.+. 
T Consensus       278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~  357 (508)
T KOG1840|consen  278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD  357 (508)
T ss_pred             CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            12   25788888899999999999988887654     1222 22 23466677789999999999999988776443 


Q ss_pred             -CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc---------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369          521 -IKPV----MDHYMCLIDMFVRLGCIEEAFDFIKKM---------DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLK  585 (758)
Q Consensus       521 -~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  585 (758)
                       ..++    ..+++.|...|...|++++|.++++++         +..+. ...++.|...|.+.+++++|.++|++...
T Consensus       358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~  437 (508)
T KOG1840|consen  358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD  437 (508)
T ss_pred             hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence             2222    467999999999999999999999987         12232 45688899999999999999998887765


Q ss_pred             c----CC---CCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369          586 L----KP---KDCESYAMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       586 ~----~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                      +    +|   +-..+|..|+..|.+.|++++|.++.+...
T Consensus       438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3    34   445678899999999999999999988775

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.17  E-value=3e-08  Score=97.62  Aligned_cols=287  Identities=13%  Similarity=0.046  Sum_probs=190.8

Q ss_pred             hCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHH
Q 004369          152 QNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIK  231 (758)
Q Consensus       152 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~  231 (758)
                      -.|++.+|.++..+-.+.+-.| ...|.....+.-+.||.+.+-++...+.+..-.++..++-+........|+++.|+.
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            4688999999888877766443 344556666777888999999998888887556777788888888889999999988


Q ss_pred             HHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCC
Q 004369          232 AFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYA  308 (758)
Q Consensus       232 ~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~  308 (758)
                      -.++..+   ++..........|.+.|++.+...++.+|.+.|+--|+..-                 ++          
T Consensus       175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l----------  227 (400)
T COG3071         175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL----------  227 (400)
T ss_pred             HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH----------
Confidence            7776654   56778888889999999999999999999998875544311                 10          


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCC
Q 004369          309 SNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMK  385 (758)
Q Consensus       309 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~  385 (758)
                       ...+++.+++-....+..+.-...++..+.   .++..-.+++.-+.+           .|+.++|.++..+..+.+..
T Consensus       228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~-----------l~~~~~A~~~i~~~Lk~~~D  295 (400)
T COG3071         228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR-----------LGDHDEAQEIIEDALKRQWD  295 (400)
T ss_pred             -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH-----------cCChHHHHHHHHHHHHhccC
Confidence             112334444444444444444455555553   334444455555666           77777787777777776666


Q ss_pred             CCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHH
Q 004369          386 PDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS--TRTLISWTSMITG  463 (758)
Q Consensus       386 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~  463 (758)
                      |+..+    +-.+.+.++.+.-.+..+...+. .+.++..+.+|...|.+.+.+.+|.+.|+...  .++..+|+-+..+
T Consensus       296 ~~L~~----~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~  370 (400)
T COG3071         296 PRLCR----LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADA  370 (400)
T ss_pred             hhHHH----HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence            65222    22344455555544444444332 13344666777777777777777777777544  4566677777777


Q ss_pred             HHhcCCHHHHHHHHHHHHHc
Q 004369          464 FANHSLSHQALQLFEDMLLA  483 (758)
Q Consensus       464 ~~~~g~~~~A~~~~~~m~~~  483 (758)
                      |.+.|+..+|.+++++....
T Consensus       371 ~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         371 LDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHcCChHHHHHHHHHHHHH
Confidence            77777777777777665543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.17  E-value=3.4e-08  Score=94.18  Aligned_cols=319  Identities=14%  Similarity=0.094  Sum_probs=175.3

Q ss_pred             hCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004369          253 ENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQK  332 (758)
Q Consensus       253 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  332 (758)
                      -+.++++|.++|-+|.+.    |..||                                .+.-+|.+.|-+.|.+|.|++
T Consensus        47 Ls~Q~dKAvdlF~e~l~~----d~~t~--------------------------------e~~ltLGnLfRsRGEvDRAIR   90 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQE----DPETF--------------------------------EAHLTLGNLFRSRGEVDRAIR   90 (389)
T ss_pred             hhcCcchHHHHHHHHHhc----Cchhh--------------------------------HHHHHHHHHHHhcchHHHHHH
Confidence            356889999999999873    22232                                223455556666666666666


Q ss_pred             HHccCCCCCeeechh-------HHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchH
Q 004369          333 LFDGMSHVNLVTWNA-------MIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALE  405 (758)
Q Consensus       333 ~~~~m~~~~~~~~~~-------li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~  405 (758)
                      +-..+.+....|++-       +..-|..           .|-+|.|..+|..+.+.+. --......++..|....+++
T Consensus        91 iHQ~L~~spdlT~~qr~lAl~qL~~Dym~-----------aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~  158 (389)
T COG2956          91 IHQTLLESPDLTFEQRLLALQQLGRDYMA-----------AGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWE  158 (389)
T ss_pred             HHHHHhcCCCCchHHHHHHHHHHHHHHHH-----------hhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHH
Confidence            655554422222222       2223333           6777777777777665431 12223344455555555555


Q ss_pred             HHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004369          406 QGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGV  485 (758)
Q Consensus       406 ~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  485 (758)
                      +|..+-....+.+-.+...   -+.                        ..|.-+...+....+.+.|..++.+..+.  
T Consensus       159 KAId~A~~L~k~~~q~~~~---eIA------------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa--  209 (389)
T COG2956         159 KAIDVAERLVKLGGQTYRV---EIA------------------------QFYCELAQQALASSDVDRARELLKKALQA--  209 (389)
T ss_pred             HHHHHHHHHHHcCCccchh---HHH------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhh--
Confidence            5555555444433222110   001                        12333444444556666677777766663  


Q ss_pred             CCCHHH-HHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHH
Q 004369          486 RPNQVT-FVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVF  563 (758)
Q Consensus       486 ~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l  563 (758)
                      .|+.+- -..+.......|+++.|.+.++.+.+. +..--.++...|..+|...|+.++.+.++.++ ...++...-..+
T Consensus       210 ~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l  288 (389)
T COG2956         210 DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELML  288 (389)
T ss_pred             CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHH
Confidence            333222 223334556667777777777776653 22222456666777777777777777777665 334444444444


Q ss_pred             HHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh--hhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEe
Q 004369          564 IAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF--VSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFK  641 (758)
Q Consensus       564 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~  641 (758)
                      ..--....-.+.|...+.+-+...|.-...|..+---.  +..|++.+...+++.|....++..|...--..+-..|.|.
T Consensus       289 ~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~  368 (389)
T COG2956         289 ADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY  368 (389)
T ss_pred             HHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence            44444444456666667777777776444444333223  2346788888888888888888777665555555555553


Q ss_pred             cCCCCCCChHH
Q 004369          642 PNDGLHPQSAE  652 (758)
Q Consensus       642 ~~~~~~~~~~~  652 (758)
                         +..|.+..
T Consensus       369 ---W~CPsC~~  376 (389)
T COG2956         369 ---WHCPSCRA  376 (389)
T ss_pred             ---eeCCCccc
Confidence               34466543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.17  E-value=2.2e-07  Score=98.84  Aligned_cols=452  Identities=14%  Similarity=0.076  Sum_probs=272.7

Q ss_pred             CCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhc---ccCChHHH-------------------HH----HHHHHHHhCC
Q 004369          153 NSQPELAIHVFLDMLEAGNYPTNVTLGTALTACS---SLESIRLG-------------------KQ----IHAYVVKYQT  206 (758)
Q Consensus       153 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a-------------------~~----~~~~~~~~g~  206 (758)
                      .+++++++.-+......+..-+..++..+..++.   -.++.++.                   ..    .+.++....+
T Consensus       240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~  319 (799)
T KOG4162|consen  240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKF  319 (799)
T ss_pred             CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhh
Confidence            4555666666666655555555555555444322   22333332                   11    1222222345


Q ss_pred             CCChhHHHHHHHHHhhcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhh-HHHH
Q 004369          207 EDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFT-LTSI  282 (758)
Q Consensus       207 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~l  282 (758)
                      ..|..+|..|.-+...+|+++.+.+.|++...   .....|+.+-..|...|.-..|+.++++-....-.|+..+ +...
T Consensus       320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma  399 (799)
T KOG4162|consen  320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA  399 (799)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence            67888999999999999999999999998764   3456899999999999999999999988765443354443 3333


Q ss_pred             HHHHc-ccCChHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhcC-----------CHHHHHHHHccCCCCCeeech
Q 004369          283 SSVCG-TMLSLRVGAQVHSLGIKL--GY--ASNLRVRNSIMYLYLKCG-----------LVDEAQKLFDGMSHVNLVTWN  346 (758)
Q Consensus       283 l~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~~~~  346 (758)
                      -..|. +.+..+++..+-..++..  +.  ......|-.+.-+|...-           ...++...+++..+.|..-.+
T Consensus       400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~  479 (799)
T KOG4162|consen  400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL  479 (799)
T ss_pred             HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence            34443 446667776666666652  11  122333444444443221           123445555554332222222


Q ss_pred             hHHH---HHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChH
Q 004369          347 AMIA---GHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDV  423 (758)
Q Consensus       347 ~li~---~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~  423 (758)
                      .+..   -|+.           .++.+.|++..++....+-.-+...+..+.-.+...+++..|..+.+.....- ..|.
T Consensus       480 ~if~lalq~A~-----------~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~  547 (799)
T KOG4162|consen  480 VIFYLALQYAE-----------QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNH  547 (799)
T ss_pred             HHHHHHHHHHH-----------HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhh
Confidence            2222   2333           67778888888888776556666677666666677777888887776655421 1111


Q ss_pred             HHHhHHhhhHHhcCCHHHHHHHHHhcC-------------------------------CCCh-hHHHHHHHHHHhcCCHH
Q 004369          424 VVGTALVNMYKKCGRIERASRVFVEMS-------------------------------TRTL-ISWTSMITGFANHSLSH  471 (758)
Q Consensus       424 ~~~~~Li~~y~~~g~~~~A~~~~~~~~-------------------------------~~~~-~~~~~li~~~~~~g~~~  471 (758)
                      .....-++.-..-++.++|......+.                               ..|. .++..+. +... -+.+
T Consensus       548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~~  625 (799)
T KOG4162|consen  548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQLK  625 (799)
T ss_pred             hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhhh
Confidence            111111111222344444444322221                               0011 1111111 1111 0000


Q ss_pred             HHHHHHHHHHHcCCCC--CH------HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004369          472 QALQLFEDMLLAGVRP--NQ------VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEE  543 (758)
Q Consensus       472 ~A~~~~~~m~~~g~~p--~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  543 (758)
                      .+..-.. |...-+.|  +.      ..|......+.+.+..++|...+.+..+  ...-....|......+...|+++|
T Consensus       626 ~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~E  702 (799)
T KOG4162|consen  626 SAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEE  702 (799)
T ss_pred             hcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHH
Confidence            0000000 11111222  21      2244455567888899999988887754  223345677777888999999999


Q ss_pred             HHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHH--HHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          544 AFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFY--AAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       544 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      |.+.|... .+.|+ +.+..++...+.+.|+...|..  ++..+++++|.++..|..|+.++-+.|+.++|..-|....+
T Consensus       703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            99999887 78884 6778999999999999888888  99999999999999999999999999999999999998876


Q ss_pred             CC
Q 004369          620 EK  621 (758)
Q Consensus       620 ~~  621 (758)
                      -.
T Consensus       783 Le  784 (799)
T KOG4162|consen  783 LE  784 (799)
T ss_pred             hc
Confidence            43

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.15  E-value=8.8e-08  Score=91.46  Aligned_cols=246  Identities=11%  Similarity=0.143  Sum_probs=187.5

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcC-CCCh--HHHHhHHhhhHHhcCCHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTG-FLSD--VVVGTALVNMYKKCGRIERA  442 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~~~~--~~~~~~Li~~y~~~g~~~~A  442 (758)
                      +++.++|.++|-+|.+.. +-+..+-.++-+.+.+.|.++.|..+|..+.++. ...+  ....-.|..-|.+.|-++.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            788999999999998742 2233445567788899999999999999888753 2222  33455678889999999999


Q ss_pred             HHHHHhcCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccccHHHHHHHHHHh
Q 004369          443 SRVFVEMSTRTL---ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV----TFVGALAACSNAGMVYEALGYFEMM  515 (758)
Q Consensus       443 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~  515 (758)
                      +++|..+.+.+.   .....|+..|-...+|++|++.-+++.+.+-++..+    .|.-+........+++.|...+++.
T Consensus       127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            999999886444   456678999999999999999999999876665532    3555555666778899999999988


Q ss_pred             hhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369          516 QKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       516 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  591 (758)
                      .+.   .|+ +..--.+.+.+...|+++.|.+.++.. ...|+  ..+...|..+|.+.|+.+++...+.++.+..++. 
T Consensus       207 lqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-  282 (389)
T COG2956         207 LQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-  282 (389)
T ss_pred             Hhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-
Confidence            652   343 344446778999999999999999988 55565  4568889999999999999999999999988774 


Q ss_pred             hhHHHHHHHhhhCCCchhHHHHHHH
Q 004369          592 ESYAMLLDIFVSAGRWEDVAVVKNL  616 (758)
Q Consensus       592 ~~~~~l~~~~~~~g~~~~a~~~~~~  616 (758)
                      ..-..+...-....-.+.|......
T Consensus       283 ~~~l~l~~lie~~~G~~~Aq~~l~~  307 (389)
T COG2956         283 DAELMLADLIELQEGIDAAQAYLTR  307 (389)
T ss_pred             cHHHHHHHHHHHhhChHHHHHHHHH
Confidence            4455555555555555555554443

>PRK12370 invasion protein regulator; Provisional

Probab=99.11  E-value=1.8e-08  Score=111.95  Aligned_cols=244  Identities=11%  Similarity=0.013  Sum_probs=179.2

Q ss_pred             CChhHHHHHHHHhHhCCCCCCH-HHHHHHHHHHh---------cccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhc
Q 004369          367 NGGTEALSIFSKLNSSGMKPDL-YTFSSILTICS---------RLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKC  436 (758)
Q Consensus       367 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~  436 (758)
                      +..++|+.+|++..+.  .|+. ..+..+..++.         ..++.++|...++.+++.. +.+...+..+...+...
T Consensus       275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence            4567999999998875  5544 34444333332         2345789999999988875 55678888899999999


Q ss_pred             CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccccHHHHHHHH
Q 004369          437 GRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV-TFVGALAACSNAGMVYEALGYF  512 (758)
Q Consensus       437 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~  512 (758)
                      |++++|...|++..+   .+...|..+...+...|++++|+..+++..+.  .|+.. .+..++..+...|++++|...+
T Consensus       352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence            999999999998663   34568888999999999999999999999984  55532 3333444566789999999999


Q ss_pred             HHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          513 EMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNE-VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       513 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      +++.+.  ..| +...+..+...|...|+.++|...++++ +..|+. ..++.+...+...|  +.|...++++++..-.
T Consensus       430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~  505 (553)
T PRK12370        430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR  505 (553)
T ss_pred             HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence            988753  234 3556777889999999999999999988 555654 44566666667777  4788888887765433


Q ss_pred             CchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          590 DCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       590 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      .+.....+..+|+-.|+-+.+..+ +.+.+.
T Consensus       506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence            333333477778888888888777 666553

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=2e-07  Score=93.80  Aligned_cols=184  Identities=11%  Similarity=0.074  Sum_probs=138.2

Q ss_pred             hHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHH
Q 004369          432 MYKKCGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEA  508 (758)
Q Consensus       432 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a  508 (758)
                      .+.-+|+.-.|..-|+....   .++..|--+...|.+..+.++-...|.+..+.+ +-|..+|..-.....-.+++++|
T Consensus       335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A  413 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA  413 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence            34557888888888887663   233447778888999999999999999988743 22355666666666667889999


Q ss_pred             HHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369          509 LGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM--DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLK  585 (758)
Q Consensus       509 ~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  585 (758)
                      ..-|++.++   +.|+ +..|-.+.-+..|.+++++++..|++.  .+.--+.+|+.....+...++++.|.+.++++++
T Consensus       414 ~aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~  490 (606)
T KOG0547|consen  414 IADFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE  490 (606)
T ss_pred             HHHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence            999988864   4554 566777777888999999999999988  3433567788888999999999999999999999


Q ss_pred             cCCC------CchhHHHHHHHhhh-CCCchhHHHHHHHhhh
Q 004369          586 LKPK------DCESYAMLLDIFVS-AGRWEDVAVVKNLTRE  619 (758)
Q Consensus       586 ~~p~------~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~  619 (758)
                      ++|.      ++..++.-+-+..+ .+++..|.++.++..+
T Consensus       491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e  531 (606)
T KOG0547|consen  491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE  531 (606)
T ss_pred             hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc
Confidence            9998      66666554333322 2778888888887765

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.08  E-value=4.1e-08  Score=96.54  Aligned_cols=199  Identities=17%  Similarity=0.105  Sum_probs=160.7

Q ss_pred             CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHH
Q 004369          387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITG  463 (758)
Q Consensus       387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~  463 (758)
                      ....+..+...+...|+++.|...+..+.+.. +.+...+..+...|...|++++|.+.|++..   ..+...+..+...
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            34556677788888999999999999888764 4457788889999999999999999998865   3456778888999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHH
Q 004369          464 FANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIE  542 (758)
Q Consensus       464 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  542 (758)
                      +...|++++|++.|++.......|. ...+..+..++...|++++|...++...+.  .+.+...+..+...+...|+++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence            9999999999999999987533333 446666777889999999999999998763  2334677888999999999999


Q ss_pred             HHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCC
Q 004369          543 EAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKP  588 (758)
Q Consensus       543 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  588 (758)
                      +|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+..|
T Consensus       187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            999999987 3334 566677788888899999999998888766543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=1.5e-06  Score=89.82  Aligned_cols=364  Identities=12%  Similarity=0.109  Sum_probs=209.1

Q ss_pred             hcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHcccCChHHHHHHHH
Q 004369          222 TCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPN-EFTLTSISSVCGTMLSLRVGAQVHS  300 (758)
Q Consensus       222 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~  300 (758)
                      +.+..++|...++.....|..+...-...+.+.|++++|+++|+.+.+++..-- ...-..++.+-+..    .+ +   
T Consensus        91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~-~---  162 (652)
T KOG2376|consen   91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV-Q---  162 (652)
T ss_pred             HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH-H---
Confidence            567888888888855444444555555677788888888888888877654321 11112222221111    00 0   


Q ss_pred             HHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHccC--------CCCCee-----ec-----hhHHHHHhhhchhhh
Q 004369          301 LGIKLGYAS--NLRVRNSIMYLYLKCGLVDEAQKLFDGM--------SHVNLV-----TW-----NAMIAGHAQMMDLAK  360 (758)
Q Consensus       301 ~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~~~~-----~~-----~~li~~~~~~~~~~~  360 (758)
                      .+......|  +-..+-.....+...|++.+|+++++..        .+.|..     .-     --|.-.+-.      
T Consensus       163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~------  236 (652)
T KOG2376|consen  163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL------  236 (652)
T ss_pred             HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH------
Confidence            111111122  1112222345567788888888888776        221111     10     111222333      


Q ss_pred             chhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHH---HHHHhcccchHHH--HHHHH-----------HHHHcCCCChHH
Q 004369          361 DDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSI---LTICSRLVALEQG--EQIHA-----------LTLKTGFLSDVV  424 (758)
Q Consensus       361 ~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~a--~~i~~-----------~~~~~~~~~~~~  424 (758)
                           .|+..+|..++...+... .+|.......   |.+.....++..+  ...++           .+....-.....
T Consensus       237 -----~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~  310 (652)
T KOG2376|consen  237 -----QGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY  310 (652)
T ss_pred             -----hcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence                 899999999999998864 4444332222   2222222222221  11111           111111111233


Q ss_pred             HHhHHhhhHHhcCCHHHHHHHHHhcCCCC-hhHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 004369          425 VGTALVNMYKKCGRIERASRVFVEMSTRT-LISWTSMITGFA--NHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAAC  499 (758)
Q Consensus       425 ~~~~Li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~  499 (758)
                      .-+.|+.+|.  +..+.+.++-...+..- ...+.+++....  +.....+|.+++...-+.  .|.  .+.....+.-.
T Consensus       311 ~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~  386 (652)
T KOG2376|consen  311 RNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLK  386 (652)
T ss_pred             HHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHH
Confidence            3345666665  55667777777766433 344455544432  223577888888877664  344  34444555566


Q ss_pred             hccccHHHHHHHHH--------HhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--------CCCCC-HHHHHH
Q 004369          500 SNAGMVYEALGYFE--------MMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--------DFEPN-EVIWSV  562 (758)
Q Consensus       500 ~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~  562 (758)
                      ...|+++.|.+++.        .+.+ .+..|  .+...++.+|.+.+..+-|-.++.+.        ...+. ..+|.-
T Consensus       387 is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~  463 (652)
T KOG2376|consen  387 ISQGNPEVALEILSLFLESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE  463 (652)
T ss_pred             HhcCCHHHHHHHHHHHhhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence            78999999999998        4443 34445  45677889999988766666666554        22222 233444


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369          563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV  613 (758)
Q Consensus       563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  613 (758)
                      +..--.++|+.++|...++++++.+|+|......++-+|++.. .+.|..+
T Consensus       464 aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l  513 (652)
T KOG2376|consen  464 AAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL  513 (652)
T ss_pred             HhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence            4555567899999999999999999999999999999998764 3444444

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.05  E-value=8.5e-06  Score=85.06  Aligned_cols=476  Identities=12%  Similarity=0.114  Sum_probs=255.8

Q ss_pred             hhHHHHHHHHhhcCCChHHHHHHHccCCC-----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004369          109 FFVMTFLVNVYGKCGNMEEAQKVFDNLPR-----INVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALT  183 (758)
Q Consensus       109 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  183 (758)
                      +.+|...+....++|++..-+..|+....     .....|...|.-.-..|-++-++.+|++.++-  .|  ..-.--+.
T Consensus       102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie  177 (835)
T KOG2047|consen  102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIE  177 (835)
T ss_pred             CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHH
Confidence            46777888888999999999999976532     34456999999888999999999999998764  33  34666777


Q ss_pred             HhcccCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHhhcCCh---HHHHHHHhccCC--CCc--chHHHHHHH
Q 004369          184 ACSSLESIRLGKQIHAYVVKYQ------TEDDTSVGNSLCSLYSTCGSL---NSAIKAFNRIRE--KNV--MSWTTVIGA  250 (758)
Q Consensus       184 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~~~~--~~~--~~~~~li~~  250 (758)
                      .++..+++++|.+.+..++...      .+.+...|.-+.+..++.-+.   -....+++.+..  +|.  ..|++|..-
T Consensus       178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY  257 (835)
T KOG2047|consen  178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY  257 (835)
T ss_pred             HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence            7888999999999888876432      234555677777776665332   233445555554  333  479999999


Q ss_pred             HhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHH
Q 004369          251 CGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYAS-NLRVRNSIMYLYLKCGLVDE  329 (758)
Q Consensus       251 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~  329 (758)
                      |.+.|.+++|.++|++-...-  ....-|+.+.++|+.-.....+..+- .....+..+ +.             -+++-
T Consensus       258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~-------------~dl~~  321 (835)
T KOG2047|consen  258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDD-------------VDLEL  321 (835)
T ss_pred             HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhh-------------hhHHH
Confidence            999999999999999977642  22333445555554321111111000 000000000 00             01111


Q ss_pred             HHHHHccCCC---------------CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCC------H
Q 004369          330 AQKLFDGMSH---------------VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPD------L  388 (758)
Q Consensus       330 A~~~~~~m~~---------------~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~------~  388 (758)
                      ...-|+.+.+               .++..|..-...+             .|+..+-...|.+..+. +.|-      .
T Consensus       322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~-------------e~~~~~~i~tyteAv~~-vdP~ka~Gs~~  387 (835)
T KOG2047|consen  322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY-------------EGNAAEQINTYTEAVKT-VDPKKAVGSPG  387 (835)
T ss_pred             HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh-------------cCChHHHHHHHHHHHHc-cCcccCCCChh
Confidence            1111221111               1112222222111             34444444444444332 1111      1


Q ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCh---HHHHhHHhhhHHhcCCHHHHHHHHHhcC---CC----------
Q 004369          389 YTFSSILTICSRLVALEQGEQIHALTLKTGFLSD---VVVGTALVNMYKKCGRIERASRVFVEMS---TR----------  452 (758)
Q Consensus       389 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~----------  452 (758)
                      ..+..+..-|-..|+++.|+.+|+...+..++.-   ..+|..-.++-.+..+++.|.++.+...   .+          
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            1233344444444555555555554444332211   2333333344444444444444444322   00          


Q ss_pred             --------ChhHHHHHHHHHHh----------------------------------cCCHHHHHHHHHHHHHcCCCCCH-
Q 004369          453 --------TLISWTSMITGFAN----------------------------------HSLSHQALQLFEDMLLAGVRPNQ-  489 (758)
Q Consensus       453 --------~~~~~~~li~~~~~----------------------------------~g~~~~A~~~~~~m~~~g~~p~~-  489 (758)
                              ....|...+.---.                                  +.-++++.++|++-...=--|+. 
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~  547 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY  547 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence                    11223333333333                                  33345555555443332122332 


Q ss_pred             HHHHHHHHHHhc---cccHHHHHHHHHHhhhhcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHc--CCCCC--HHHH
Q 004369          490 VTFVGALAACSN---AGMVYEALGYFEMMQKEYKIKPVMD--HYMCLIDMFVRLGCIEEAFDFIKKM--DFEPN--EVIW  560 (758)
Q Consensus       490 ~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~  560 (758)
                      ..|+..|.-+.+   ...++.|+.+|++..+  +.+|.-.  .|-.....=-+-|....|+.+++++  ++++.  ...|
T Consensus       548 diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~my  625 (835)
T KOG2047|consen  548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMY  625 (835)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            234444433222   2357778888887776  6655422  1222222223456777777787777  44442  2356


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHhccCCCCch--hHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          561 SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE--SYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       561 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      |..|.--...=-+..-..+++++++.-|++-.  .....+++=.+.|..+.|+.++..-.+-
T Consensus       626 ni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~  687 (835)
T KOG2047|consen  626 NIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI  687 (835)
T ss_pred             HHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence            66665444333344556788888887776433  3344577788899999999988876553

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=6.5e-07  Score=86.41  Aligned_cols=442  Identities=13%  Similarity=0.077  Sum_probs=210.9

Q ss_pred             hhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHH
Q 004369           84 CVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR---INVVSWTSLISGYVQNSQPELAI  160 (758)
Q Consensus        84 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~  160 (758)
                      +....++..|..+++.-...+-+....+..-+...|.+.|++++|..++..+.+   ++...|--|.-.+.-.|.+.+|.
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~  111 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK  111 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence            334455666666655544322111112222233445566667766666655432   23334444444444455666665


Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC--
Q 004369          161 HVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE--  238 (758)
Q Consensus       161 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--  238 (758)
                      .+-....+     ++..-..++...-+.++-+.-..+|+.+...     ..---+|..+.--.-.+.+|..++.++..  
T Consensus       112 ~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn  181 (557)
T KOG3785|consen  112 SIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN  181 (557)
T ss_pred             HHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            55443321     2222223333344555555555555554321     11222333333333467778888877765  


Q ss_pred             CCcchHHHHH-HHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHc--ccCChHHHHHHHHHHHHhCCCCchhHHH
Q 004369          239 KNVMSWTTVI-GACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCG--TMLSLRVGAQVHSLGIKLGYASNLRVRN  315 (758)
Q Consensus       239 ~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~  315 (758)
                      |+-...|.-+ -.|.+..-++-+.+++.--++.  -||+ |+..=+.+|.  +.=.-..+++-...+...+-..     -
T Consensus       182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~  253 (557)
T KOG3785|consen  182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----Y  253 (557)
T ss_pred             hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----c
Confidence            3444444333 3566677777777777666654  2443 2333333332  2111122222222222222100     0


Q ss_pred             HHHHHHHhc-----CCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHH
Q 004369          316 SIMYLYLKC-----GLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYT  390 (758)
Q Consensus       316 ~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t  390 (758)
                      ..+.-.++.     ..-+.|..++-.+.+.=+..--.++--|.+           +++..+|..+.+++.-  ..|-...
T Consensus       254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~-----------q~dVqeA~~L~Kdl~P--ttP~Eyi  320 (557)
T KOG3785|consen  254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN-----------QNDVQEAISLCKDLDP--TTPYEYI  320 (557)
T ss_pred             hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc-----------cccHHHHHHHHhhcCC--CChHHHH
Confidence            111111221     112334444333222111111223333444           6666666666655421  1222222


Q ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC----C-hhHHHHHHHHHH
Q 004369          391 FSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR----T-LISWTSMITGFA  465 (758)
Q Consensus       391 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~----~-~~~~~~li~~~~  465 (758)
                      ...+..                              .++..-......+.-|.+.|+-....    | +.--.+|.+.+.
T Consensus       321 lKgvv~------------------------------aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF  370 (557)
T KOG3785|consen  321 LKGVVF------------------------------AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF  370 (557)
T ss_pred             HHHHHH------------------------------HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence            222111                              11111112222344455555443321    1 122344555555


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHH-HHHHHHHHcCCHHHH
Q 004369          466 NHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYM-CLIDMFVRLGCIEEA  544 (758)
Q Consensus       466 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A  544 (758)
                      -..++++.+-.++....- +..|..--..+..|.+..|++.+|.++|-.+.. ..+ .+..+|. .|...|.++++.+-|
T Consensus       371 L~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~lA  447 (557)
T KOG3785|consen  371 LSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEI-KNKILYKSMLARCYIRNKKPQLA  447 (557)
T ss_pred             HHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhh-hhhHHHHHHHHHHHHhcCCchHH
Confidence            556666666666666554 233333333456677778888888888876643 122 2334443 456778888888888


Q ss_pred             HHHHHHcCCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          545 FDFIKKMDFEPNEVIWSV-FIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       545 ~~~~~~m~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      ++++-++.-..+..+... +..-|.+.+.+=-|-++|..+-.++|.
T Consensus       448 W~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~  493 (557)
T KOG3785|consen  448 WDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT  493 (557)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence            888887754445544433 345677888777777788777777775

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.05  E-value=3.4e-08  Score=100.35  Aligned_cols=211  Identities=14%  Similarity=0.098  Sum_probs=152.4

Q ss_pred             cchHHHHHHHHHHHHcC-CCCh--HHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHH
Q 004369          402 VALEQGEQIHALTLKTG-FLSD--VVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQ  475 (758)
Q Consensus       402 ~~~~~a~~i~~~~~~~~-~~~~--~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~  475 (758)
                      +..+.+..-+..++... ..|+  ...+..+...|.+.|+.++|...|++..   ..+...|+.+...+...|++++|++
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            34455566666666432 2222  4567788888999999999999998865   3467899999999999999999999


Q ss_pred             HHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--C
Q 004369          476 LFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--D  552 (758)
Q Consensus       476 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~  552 (758)
                      .|++..+  +.|+ ..++..+..++...|++++|.+.|+...+.   .|+..........+...++.++|.+.+++.  .
T Consensus       120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            9999998  5666 567788888889999999999999998763   454322222223345678899999999765  3


Q ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHh-------ccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369          553 FEPNEVIWSVFIAGCRRHGNMELGFYAAEQLL-------KLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       553 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  621 (758)
                      ..|+...|   .......|+...+ ..++.+.       ++.|..+..|..|+.+|.+.|++++|...++...+.+
T Consensus       195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            33333222   2233345666544 2444443       4456677899999999999999999999999988643

>PRK12370 invasion protein regulator; Provisional

Probab=99.05  E-value=2.9e-08  Score=110.31  Aligned_cols=210  Identities=14%  Similarity=0.037  Sum_probs=163.0

Q ss_pred             cchHHHHHHHHHHHHcCCCChHHHHhHHhhhHH---------hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC
Q 004369          402 VALEQGEQIHALTLKTGFLSDVVVGTALVNMYK---------KCGRIERASRVFVEMST---RTLISWTSMITGFANHSL  469 (758)
Q Consensus       402 ~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~  469 (758)
                      +++++|.+.++..++.. +.+...+..+...|.         ..+++++|...+++..+   .+...|..+...+...|+
T Consensus       275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence            34578888888888753 334556666655443         23458999999998763   366788889889999999


Q ss_pred             HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 004369          470 SHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM-DHYMCLIDMFVRLGCIEEAFDF  547 (758)
Q Consensus       470 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~  547 (758)
                      +++|+..|++..+.  .|+ ...+..+..++...|++++|...++.+.+   +.|+. ..+..+...+...|++++|.+.
T Consensus       354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~  428 (553)
T PRK12370        354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL  428 (553)
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence            99999999999984  566 55677788889999999999999999976   34542 2333445567778999999999


Q ss_pred             HHHc--CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          548 IKKM--DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       548 ~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +++.  ...|+ ...+..+...+...|+.++|...++++....|.+......|+..|...|  ++|...++.+.+
T Consensus       429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            9887  22454 4457778888889999999999999998888888888888888888888  477777777655

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.04  E-value=6.2e-08  Score=102.48  Aligned_cols=162  Identities=15%  Similarity=0.117  Sum_probs=117.5

Q ss_pred             HHHhHHhhhHHhcCCHHHHHHHHHhcC----------CCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC-
Q 004369          424 VVGTALVNMYKKCGRIERASRVFVEMS----------TRTLI-SWTSMITGFANHSLSHQALQLFEDMLLA---GVRPN-  488 (758)
Q Consensus       424 ~~~~~Li~~y~~~g~~~~A~~~~~~~~----------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~-  488 (758)
                      .+++.|...|.+.|++++|...+++..          .+.+. -++.++..+...+++++|..++++..+.   -+.++ 
T Consensus       284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~  363 (508)
T KOG1840|consen  284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN  363 (508)
T ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence            345555666677777666666555432          12222 3566777788888888888888876542   13333 


Q ss_pred             ---HHHHHHHHHHHhccccHHHHHHHHHHhhhhc-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc--------
Q 004369          489 ---QVTFVGALAACSNAGMVYEALGYFEMMQKEY-----KIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM--------  551 (758)
Q Consensus       489 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--------  551 (758)
                         .-+++.+...|.+.|++++|.++|+++....     +..+. ...++.|...|.+.++.++|.++|.+.        
T Consensus       364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g  443 (508)
T KOG1840|consen  364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG  443 (508)
T ss_pred             hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence               3578889999999999999999999887632     11222 456788999999999999999888876        


Q ss_pred             CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369          552 DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLK  585 (758)
Q Consensus       552 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  585 (758)
                      +..|+ ..+|..|...|...|++|.|+++.++++.
T Consensus       444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            33454 45699999999999999999999988874

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=2.2e-05  Score=85.85  Aligned_cols=157  Identities=16%  Similarity=0.242  Sum_probs=123.5

Q ss_pred             CHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369          438 RIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK  517 (758)
Q Consensus       438 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  517 (758)
                      .++.|.++-++..  .+..|+.+..+-.+.|...+|++-|-+.      -|...|.-++.++++.|.+++-.+++..+++
T Consensus      1090 ~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred             hHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            3444444333333  3357999999999999999999887542      3577899999999999999999999988877


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369          518 EYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML  597 (758)
Q Consensus       518 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  597 (758)
                      + .-+|.++  +.||-+|++.+++.|-++++.    -||..-...+.+-|...|.++.|.-++...        +.|..|
T Consensus      1162 k-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~L 1226 (1666)
T KOG0985|consen 1162 K-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKL 1226 (1666)
T ss_pred             h-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHH
Confidence            4 6677655  578999999999999888875    378878889999999999999998887654        677888


Q ss_pred             HHHhhhCCCchhHHHHHHHh
Q 004369          598 LDIFVSAGRWEDVAVVKNLT  617 (758)
Q Consensus       598 ~~~~~~~g~~~~a~~~~~~m  617 (758)
                      +..+...|.+..|...-++.
T Consensus      1227 a~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             HHHHHHHHHHHHHHHHhhhc
Confidence            88888888888776654443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.00  E-value=1.4e-06  Score=91.49  Aligned_cols=197  Identities=13%  Similarity=0.091  Sum_probs=86.1

Q ss_pred             CCCCCchhHHHHHHHHHHHcCCCCCcch-HHHHHHHh-------------hcCCCcHHHHHHHHHHHH-------h-CCC
Q 004369           49 GNSEPVRSLGFQEALSVLTEGPKVQTSS-YVSLLQEC-------------VNRKSLSNAEIIHAHIVK-------T-GSH  106 (758)
Q Consensus        49 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~ll~~~-------------~~~~~~~~a~~~~~~~~~-------~-g~~  106 (758)
                      +...|+++.|..++..+ ..  .|+... |..+....             +..|++.+++.+|+-+.-       . |-.
T Consensus       454 aid~~df~ra~afles~-~~--~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdg  530 (1636)
T KOG3616|consen  454 AIDDGDFDRATAFLESL-EM--GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDG  530 (1636)
T ss_pred             ccccCchHHHHHHHHhh-cc--CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCC
Confidence            34578888888777654 22  344433 44443333             334455555555543321       1 112


Q ss_pred             CchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 004369          107 QDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACS  186 (758)
Q Consensus       107 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~  186 (758)
                      .+.+-..+++.++.  .++.+|..+|-+-.  +   -..-|..|....++++|+.+-+..   |.+.-...-.+.++++.
T Consensus       531 t~fykvra~lail~--kkfk~ae~ifleqn--~---te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~  600 (1636)
T KOG3616|consen  531 TDFYKVRAMLAILE--KKFKEAEMIFLEQN--A---TEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALM  600 (1636)
T ss_pred             chHHHHHHHHHHHH--hhhhHHHHHHHhcc--c---HHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHH
Confidence            23333344444433  24566666653311  1   123344555555666666554321   11111111122233333


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccC--CCCcchHHHHHHHHhhCCChhhHHHHH
Q 004369          187 SLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIR--EKNVMSWTTVIGACGENGEAVQGLRFF  264 (758)
Q Consensus       187 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~  264 (758)
                      ..|+-+.|-++         ..+..-.-+-|..|.+.|....|.+.-..=.  ..|......+..++.+..-+++|=++|
T Consensus       601 dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlf  671 (1636)
T KOG3616|consen  601 DTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLF  671 (1636)
T ss_pred             hcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHH
Confidence            33433333222         1111112334566666666666655432211  133334444444455555555555555


Q ss_pred             HHH
Q 004369          265 SKM  267 (758)
Q Consensus       265 ~~m  267 (758)
                      +++
T Consensus       672 eki  674 (1636)
T KOG3616|consen  672 EKI  674 (1636)
T ss_pred             HHh
Confidence            554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.98  E-value=5e-06  Score=88.83  Aligned_cols=439  Identities=13%  Similarity=0.089  Sum_probs=239.5

Q ss_pred             CCCchhHHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhh-HHH
Q 004369          105 SHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR---INVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVT-LGT  180 (758)
Q Consensus       105 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~  180 (758)
                      +.-|..+|..|.-++.++|+++.+.+.|++...   .....|+.+-..|...|.-..|+.+++.-....-.|+..+ +..
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm  398 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM  398 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence            445667777777777778888888887776542   2334577777777778887788877776554332343333 333


Q ss_pred             HHHHhc-ccCChHHHHHHHHHHHHhC--C--CCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCC
Q 004369          181 ALTACS-SLESIRLGKQIHAYVVKYQ--T--EDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENG  255 (758)
Q Consensus       181 ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g  255 (758)
                      .-+.|. +.+..+++..+-..++...  .  ...+..+-.+.-+|...-              ....++.-      +..
T Consensus       399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se------R~~  458 (799)
T KOG4162|consen  399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE------RDA  458 (799)
T ss_pred             HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH------HHH
Confidence            333333 3355555555555554411  0  011112222222221110              00000000      011


Q ss_pred             ChhhHHHHHHHHHHCC-CCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004369          256 EAVQGLRFFSKMLSEG-IQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLF  334 (758)
Q Consensus       256 ~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  334 (758)
                      ...++++.+++..+.+ -.|+..-|.++  -++..++++.|.+...+..+.+-..+...|.-|.-.+...+++.+|+.+.
T Consensus       459 ~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv  536 (799)
T KOG4162|consen  459 LHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV  536 (799)
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            2345556666655432 23443333333  23445666666666666666655666666666666666667777777666


Q ss_pred             ccCCCCCeeechhH---HHHHhhhchhhhchhhcCCChhHHHHHHHHhHhC--CCCCCHHHHHHHHHHHhcccchHHHHH
Q 004369          335 DGMSHVNLVTWNAM---IAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSS--GMKPDLYTFSSILTICSRLVALEQGEQ  409 (758)
Q Consensus       335 ~~m~~~~~~~~~~l---i~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~  409 (758)
                      +...+.-...++.|   +..-..           -++.++++.+...+..-  ...+-..+           ++-....+
T Consensus       537 d~al~E~~~N~~l~~~~~~i~~~-----------~~~~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~  594 (799)
T KOG4162|consen  537 DAALEEFGDNHVLMDGKIHIELT-----------FNDREEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLR  594 (799)
T ss_pred             HHHHHHhhhhhhhchhhhhhhhh-----------cccHHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhh
Confidence            55432111111111   111111           45556666665555431  00000000           00000001


Q ss_pred             HHHHHHH--cCCCChHHHHhHHhhhHH---hcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHH
Q 004369          410 IHALTLK--TGFLSDVVVGTALVNMYK---KCGRIERASRVFVEMSTRT------LISWTSMITGFANHSLSHQALQLFE  478 (758)
Q Consensus       410 i~~~~~~--~~~~~~~~~~~~Li~~y~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~  478 (758)
                      ....+.-  ........++..+.....   +.-..+.....+...+.++      ...|......+.+.++.++|...+.
T Consensus       595 lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~  674 (799)
T KOG4162|consen  595 LKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLL  674 (799)
T ss_pred             hhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            1000000  000111122222211111   1111111112222222232      2357777788889999999998888


Q ss_pred             HHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHc-CC
Q 004369          479 DMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFD--FIKKM-DF  553 (758)
Q Consensus       479 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~  553 (758)
                      +....  .|- ...|......+...|..++|.+.|....   -+.|+ +....++..++.+.|+..-|.+  ++..+ .+
T Consensus       675 Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~  749 (799)
T KOG4162|consen  675 EASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL  749 (799)
T ss_pred             HHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence            87663  343 4555555567778899999999998774   46676 6778899999999998777777  88887 77


Q ss_pred             CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369          554 EP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE  592 (758)
Q Consensus       554 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  592 (758)
                      .| +...|-.|...+.+.|+.+.|-..|.-++++++.+|.
T Consensus       750 dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  750 DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            88 7889999999999999999999999999999887664

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.97  E-value=1.7e-07  Score=95.24  Aligned_cols=227  Identities=11%  Similarity=-0.020  Sum_probs=162.2

Q ss_pred             CCChhHHHHHHHHhHhCC-CCCC--HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHH
Q 004369          366 HNGGTEALSIFSKLNSSG-MKPD--LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERA  442 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A  442 (758)
                      .+..+.++..+.++.... ..|+  ...|......+...|+.+.|...+...++.. +.+...|+.+...|...|++++|
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            566788888888888642 2332  2456666677889999999999999998864 45688999999999999999999


Q ss_pred             HHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhc
Q 004369          443 SRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEY  519 (758)
Q Consensus       443 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~  519 (758)
                      ...|++..+   .+...|..+...+...|++++|++.|++..+.  .|+..........+...++.++|...|.....  
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--  193 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--  193 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence            999998763   35678888999999999999999999999884  56543222222234456789999999977654  


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHc-C----CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC-
Q 004369          520 KIKPVMDHYMCLIDMFVRLGCIEE--AFDFIKKM-D----FEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD-  590 (758)
Q Consensus       520 ~~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-  590 (758)
                      ...|+...+ .++..  ..|++.+  +.+.+.+. .    ..| ....|..+...+...|++++|...++++++.+|.| 
T Consensus       194 ~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~  270 (296)
T PRK11189        194 KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF  270 (296)
T ss_pred             hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence            334443322 33333  3454433  33333322 1    122 23579999999999999999999999999999754 


Q ss_pred             chhHHHHHHH
Q 004369          591 CESYAMLLDI  600 (758)
Q Consensus       591 ~~~~~~l~~~  600 (758)
                      .++-..++..
T Consensus       271 ~e~~~~~~e~  280 (296)
T PRK11189        271 VEHRYALLEL  280 (296)
T ss_pred             HHHHHHHHHH
Confidence            3333334433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=2.4e-08  Score=95.08  Aligned_cols=224  Identities=13%  Similarity=0.054  Sum_probs=185.5

Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcC
Q 004369          392 SSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST--R-TLISWTSMITGFANHS  468 (758)
Q Consensus       392 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g  468 (758)
                      +.+-.+|.++|.+.+|+..+....+..  |-+.+|-.|-..|.+..+.+.|+.+|.+-.+  | |+....-+...+...+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence            456778889999999999888777763  4556777788899999999999999988763  3 4444556777888889


Q ss_pred             CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004369          469 LSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDF  547 (758)
Q Consensus       469 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  547 (758)
                      +.++|.++|++..+.  .|+ ......+...|.-.++++-|..++.++.. .|+ .+.+.|+.+.-.+.-.+++|-++.-
T Consensus       305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence            999999999999884  443 44555566677888999999999999987 466 4568888888888899999999999


Q ss_pred             HHHc---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369          548 IKKM---DFEPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       548 ~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  621 (758)
                      |.+.   ...|+  ..+|-.|.......||+..|.+.++-.+..+|++.+.++.|+-.-.+.|++++|+.+++..+...
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            9887   23343  56799999999999999999999999999999999999999999999999999999999887643

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=8.5e-07  Score=91.19  Aligned_cols=276  Identities=16%  Similarity=0.095  Sum_probs=157.2

Q ss_pred             CcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004369          240 NVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMY  319 (758)
Q Consensus       240 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  319 (758)
                      |+...-.-..-+...+++.+.+++++...+.. ++....+..=|.++-..|+...-..+=..+++. ++....+|-++.-
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~  320 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC  320 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence            44444444555666777777777777776542 233333333344445555544433333333333 3556677777777


Q ss_pred             HHHhcCCHHHHHHHHccCCCCCe---eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhC--CC-CCCHHHHHH
Q 004369          320 LYLKCGLVDEAQKLFDGMSHVNL---VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSS--GM-KPDLYTFSS  393 (758)
Q Consensus       320 ~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~--g~-~p~~~t~~~  393 (758)
                      -|.-.|+.++|++.|.+...-|.   ..|-.....|+-           .|..++|+..+...-+.  |. .|.    --
T Consensus       321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~-----------e~EhdQAmaaY~tAarl~~G~hlP~----LY  385 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG-----------EGEHDQAMAAYFTAARLMPGCHLPS----LY  385 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh-----------cchHHHHHHHHHHHHHhccCCcchH----HH
Confidence            78778888888888877654332   457777777777           77778887777665442  21 111    11


Q ss_pred             HHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHH
Q 004369          394 ILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQA  473 (758)
Q Consensus       394 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  473 (758)
                      +---|.+.++.+.|.+.+..+.... |.|+.+.+-+.-+.-                               ..+.+.+|
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay-------------------------------~~~~y~~A  433 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAY-------------------------------TYEEYPEA  433 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheee-------------------------------hHhhhHHH
Confidence            1122334445555555554444331 334444444444444                               44445555


Q ss_pred             HHHHHHHHHc----C-CC-CCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004369          474 LQLFEDMLLA----G-VR-PNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDF  547 (758)
Q Consensus       474 ~~~~~~m~~~----g-~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  547 (758)
                      ..+|+..+..    + -+ --..+++.|..+|.+.+.+++|+..|++...  -.+.+..++.++.-.|...|+++.|.+.
T Consensus       434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~  511 (611)
T KOG1173|consen  434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDH  511 (611)
T ss_pred             HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHH
Confidence            5555444310    0 01 1244567777777777777777777777765  3445566777777777777777777777


Q ss_pred             HHHc-CCCCCHHHHHHHHHH
Q 004369          548 IKKM-DFEPNEVIWSVFIAG  566 (758)
Q Consensus       548 ~~~m-~~~p~~~~~~~ll~~  566 (758)
                      |.+. .++||..+-..++..
T Consensus       512 fhKaL~l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  512 FHKALALKPDNIFISELLKL  531 (611)
T ss_pred             HHHHHhcCCccHHHHHHHHH
Confidence            7776 667766555555553

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=1.2e-05  Score=77.93  Aligned_cols=190  Identities=14%  Similarity=0.120  Sum_probs=128.9

Q ss_pred             HHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 004369          428 ALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSL-------SHQALQLFEDMLLAGVRPNQV-TFVGALAAC  499 (758)
Q Consensus       428 ~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~  499 (758)
                      .|+--|.+.+++++|..+.+++....+.-|-.-.-.++..|+       ..-|.+.|+-.-+++..-|.+ --.++.+++
T Consensus       290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f  369 (557)
T KOG3785|consen  290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF  369 (557)
T ss_pred             hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence            466678899999999999998876665544333333444443       455666665555555444422 223344445


Q ss_pred             hccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCC-CCHHHHHHHHHHH-HHcCChhHH
Q 004369          500 SNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFE-PNEVIWSVFIAGC-RRHGNMELG  576 (758)
Q Consensus       500 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~-~~~g~~~~a  576 (758)
                      .-..++++.+-+++.+.. +=...|...|| +..+++..|.+.+|+++|-+. +.+ .|..+|.+++.-| .+.|..+.|
T Consensus       370 FL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA  447 (557)
T KOG3785|consen  370 FLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA  447 (557)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence            556678999999999876 45555555554 789999999999999999887 322 3777887776655 556777777


Q ss_pred             HHHHHHHhccC-CCCc-hhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369          577 FYAAEQLLKLK-PKDC-ESYAMLLDIFVSAGRWEDVAVVKNLTREEKL  622 (758)
Q Consensus       577 ~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  622 (758)
                      ..++   ++.+ |.+. .....+++-|.+++.+--|.+.|..+...+.
T Consensus       448 W~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP  492 (557)
T KOG3785|consen  448 WDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP  492 (557)
T ss_pred             HHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence            6654   4443 4332 3445668889999999999999998876443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=7.4e-05  Score=81.93  Aligned_cols=228  Identities=14%  Similarity=0.175  Sum_probs=143.8

Q ss_pred             HHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhh
Q 004369          100 IVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR--INVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVT  177 (758)
Q Consensus       100 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  177 (758)
                      ..+.|..||...   ++....+ -.++.+.+....+++  +...-.+.+...+...+....+..++-...+. ..|+...
T Consensus       504 ~kKvGyTPdymf---lLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~-~~Pd~g~  578 (1666)
T KOG0985|consen  504 AKKVGYTPDYMF---LLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKL-NSPDEGH  578 (1666)
T ss_pred             HHHcCCCccHHH---HHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcC-CChhhhh
Confidence            345677787433   3444444 567777777777764  33445677777777777777777776666543 4555544


Q ss_pred             HHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC-CCcchHHHH-----HHHH
Q 004369          178 LGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE-KNVMSWTTV-----IGAC  251 (758)
Q Consensus       178 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~l-----i~~~  251 (758)
                      ..+-+---...+    |-++-+.+.-.+. .+.+-+..+...+.+.|-+..|++.+..+.. +-++..+.+     +-+|
T Consensus       579 LQTrLLE~NL~~----aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~y  653 (1666)
T KOG0985|consen  579 LQTRLLEMNLVH----APQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNY  653 (1666)
T ss_pred             HHHHHHHHHhcc----chHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHH
Confidence            433222111122    2222233332222 1222366777889999999999999988765 111221111     2345


Q ss_pred             hhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHh-----------CCCCchhHHHHHHHH
Q 004369          252 GENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKL-----------GYASNLRVRNSIMYL  320 (758)
Q Consensus       252 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~  320 (758)
                      .-.-.++++++.++.|...+++.|..+...+..-|...-..+.-.++|+.....           ++..|..+.-..|.+
T Consensus       654 Fg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqA  733 (1666)
T KOG0985|consen  654 FGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQA  733 (1666)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHH
Confidence            556678999999999999999888887777766666555555555555543321           456777788889999


Q ss_pred             HHhcCCHHHHHHHHccC
Q 004369          321 YLKCGLVDEAQKLFDGM  337 (758)
Q Consensus       321 ~~~~g~~~~A~~~~~~m  337 (758)
                      -++.|++.+.+++-++-
T Consensus       734 A~kt~QikEvERicres  750 (1666)
T KOG0985|consen  734 ACKTGQIKEVERICRES  750 (1666)
T ss_pred             HHhhccHHHHHHHHhcc
Confidence            99999999998887654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.92  E-value=1.3e-07  Score=86.26  Aligned_cols=162  Identities=13%  Similarity=0.052  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHH
Q 004369          456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLID  533 (758)
Q Consensus       456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~  533 (758)
                      +...|.-+|.+.|+...|..-+++.++.  .|+ ..++..+...|.+.|..+.|.+.|+...+   +.| +..+.|....
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~  111 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence            3455677888889999999988888884  565 55788888888899999999999988865   344 4677888888


Q ss_pred             HHHHcCCHHHHHHHHHHc---CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchh
Q 004369          534 MFVRLGCIEEAFDFIKKM---DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWED  609 (758)
Q Consensus       534 ~~~~~g~~~~A~~~~~~m---~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  609 (758)
                      -+|..|++++|...|++.   |.-| -..+|..+..+..+.|+.+.|+..+++.++++|+.+.....+.+...+.|++-.
T Consensus       112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence            899999999999999988   2222 356788888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCC
Q 004369          610 VAVVKNLTREEKL  622 (758)
Q Consensus       610 a~~~~~~m~~~~~  622 (758)
                      |..+++....++.
T Consensus       192 Ar~~~~~~~~~~~  204 (250)
T COG3063         192 ARLYLERYQQRGG  204 (250)
T ss_pred             HHHHHHHHHhccc
Confidence            9999888776543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.86  E-value=4.2e-05  Score=80.35  Aligned_cols=448  Identities=16%  Similarity=0.135  Sum_probs=237.6

Q ss_pred             HHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhC
Q 004369           77 YVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR---INVVSWTSLISGYVQN  153 (758)
Q Consensus        77 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~  153 (758)
                      |..++..| ..+++..+....+.+++ +++....+.....-.+...|+.++|....+.-..   ++.+.|..+.-.+-..
T Consensus        11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen   11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence            33344433 45667777777777776 3333334433333344567889999888766544   4567799988888888


Q ss_pred             CCchHHHHHHHHHHHcCCCCCh-hhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHH
Q 004369          154 SQPELAIHVFLDMLEAGNYPTN-VTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKA  232 (758)
Q Consensus       154 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~  232 (758)
                      .++++|+..|......  .||. ..+.-+--.-++.++++.......+..+.                            
T Consensus        89 K~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----------------------------  138 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----------------------------  138 (700)
T ss_pred             hhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----------------------------
Confidence            9999999999998774  3443 22322222222333333332222222221                            


Q ss_pred             HhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCC-CCCChhhHHHHHH------HHcccCChHHHHHHHHHHHHh
Q 004369          233 FNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEG-IQPNEFTLTSISS------VCGTMLSLRVGAQVHSLGIKL  305 (758)
Q Consensus       233 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~  305 (758)
                          .......|..++.++--.|+...|..++++..+.. -.|+...|.....      .....|..+.+.+........
T Consensus       139 ----~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~  214 (700)
T KOG1156|consen  139 ----RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ  214 (700)
T ss_pred             ----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH
Confidence                01133456666666666666666666666665543 2344444332221      223345555554444332211


Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCeeechhHH-HHHhhhchhhhchhhcCCChhHHH-HHHHHhHh
Q 004369          306 GYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH--VNLVTWNAMI-AGHAQMMDLAKDDLSAHNGGTEAL-SIFSKLNS  381 (758)
Q Consensus       306 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li-~~~~~~~~~~~~~l~~~g~~~~A~-~l~~~m~~  381 (758)
                       +......--.-.+.+.+.+++++|..++..+..  ||.+.|.-.. .++.+           -.+.-+++ .+|....+
T Consensus       215 -i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk-----------~~d~~~~lk~ly~~ls~  282 (700)
T KOG1156|consen  215 -IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGK-----------IKDMLEALKALYAILSE  282 (700)
T ss_pred             -HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHH-----------HhhhHHHHHHHHHHHhh
Confidence             122222333445566777777777777777765  3333333332 22222           11222233 44444433


Q ss_pred             C---CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHH---H-HHHHHHhc-----
Q 004369          382 S---GMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIE---R-ASRVFVEM-----  449 (758)
Q Consensus       382 ~---g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~---~-A~~~~~~~-----  449 (758)
                      .   .-.|-...    ++......-.+....++....+.|+++   ++..+...|-.-...+   + +..+...+     
T Consensus       283 ~y~r~e~p~Rlp----lsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~  355 (700)
T KOG1156|consen  283 KYPRHECPRRLP----LSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGM  355 (700)
T ss_pred             cCcccccchhcc----HHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccC
Confidence            2   01111111    111111112223333444555555543   2222222222211111   0 01111111     


Q ss_pred             ---------CCCChhHHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369          450 ---------STRTLISWTS--MITGFANHSLSHQALQLFEDMLLAGVRPNQV-TFVGALAACSNAGMVYEALGYFEMMQK  517 (758)
Q Consensus       450 ---------~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~  517 (758)
                               ..|....|+.  ++..|-..|+++.|+.+++....  -.|+.+ -|..=.+.+.+.|++++|..++++..+
T Consensus       356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e  433 (700)
T KOG1156|consen  356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE  433 (700)
T ss_pred             CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence                     1234445554  67778889999999999999887  477744 454555778899999999999999876


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCC-CCHH--------HHHHH--HHHHHHcCChhHHHHHHHHH
Q 004369          518 EYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFE-PNEV--------IWSVF--IAGCRRHGNMELGFYAAEQL  583 (758)
Q Consensus       518 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~--------~~~~l--l~~~~~~g~~~~a~~~~~~~  583 (758)
                        --.||...-+--+.-..++.+.++|.++.....-. -+..        .|-.+  ..+|.+.|++.+|++-+..+
T Consensus       434 --lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  434 --LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             --ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence              33466555445666777999999999987776111 0211        34444  34677888887777654444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.85  E-value=3.1e-05  Score=81.29  Aligned_cols=387  Identities=13%  Similarity=0.081  Sum_probs=218.9

Q ss_pred             hcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHcccCChHHHHH
Q 004369          222 TCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEF-TLTSISSVCGTMLSLRVGAQ  297 (758)
Q Consensus       222 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~  297 (758)
                      ..|+-++|......-..   ++.+.|..+.-.+-...++++|+..|+.....  .||.. .+.-+--.-++.++++....
T Consensus        53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~  130 (700)
T KOG1156|consen   53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLE  130 (700)
T ss_pred             cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence            34555666555554443   34566776665565666777777777776653  23332 22222222234445544444


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC-----CCeeechhHHHHHhhhchhhhchhhcCCChhHH
Q 004369          298 VHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH-----VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEA  372 (758)
Q Consensus       298 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A  372 (758)
                      ......+.. +.....|..+.-++.-.|+...|..+.++...     ++...+.-...-.-+.     +.+.+.|..++|
T Consensus       131 tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n-----~i~~E~g~~q~a  204 (700)
T KOG1156|consen  131 TRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQN-----QILIEAGSLQKA  204 (700)
T ss_pred             HHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH-----HHHHHcccHHHH
Confidence            444433322 33344566666666677777777777766543     2333333222222221     112338888888


Q ss_pred             HHHHHHhHhCCCCCCHHHH-HHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHH-HHHHhcC
Q 004369          373 LSIFSKLNSSGMKPDLYTF-SSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERAS-RVFVEMS  450 (758)
Q Consensus       373 ~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~-~~~~~~~  450 (758)
                      ++.+..-...  ..|...+ .+-...+.+.+++++|..++..++... +.+...|-.+..++.+--+.-++. .+|....
T Consensus       205 le~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls  281 (700)
T KOG1156|consen  205 LEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILS  281 (700)
T ss_pred             HHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            8887665432  2233322 223345677889999999998888763 334444555566665433333333 5555544


Q ss_pred             CC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHH---H-HHHHHHHhhhhc----
Q 004369          451 TR---TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVY---E-ALGYFEMMQKEY----  519 (758)
Q Consensus       451 ~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~---~-a~~~~~~~~~~~----  519 (758)
                      +.   ....-..=++........+..-+++..+.+.|++|--..+.++.   -.-...+   + +..+...+....    
T Consensus       282 ~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L~~~~~f~~  358 (700)
T KOG1156|consen  282 EKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSLSGTGMFNF  358 (700)
T ss_pred             hcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhcccccCCCc
Confidence            21   00000000011111222444556677777888766444444433   2211111   1 122222221100    


Q ss_pred             ---C--CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369          520 ---K--IKPVMD--HYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEV-IWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD  590 (758)
Q Consensus       520 ---~--~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  590 (758)
                         +  -+|...  ++-.++..|-+.|+++.|++.++.. +..|..+ .|..=...+...|++++|...++++.+++-.|
T Consensus       359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD  438 (700)
T KOG1156|consen  359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD  438 (700)
T ss_pred             ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence               0  145543  4456788899999999999999988 7677644 35455577888899999999999999999877


Q ss_pred             chhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369          591 CESYAMLLDIFVSAGRWEDVAVVKNLTREEKL  622 (758)
Q Consensus       591 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  622 (758)
                      ......-++-..++.+.++|.++.......|.
T Consensus       439 R~INsKcAKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  439 RAINSKCAKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence            66666778888899999999999888776653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.83  E-value=9.1e-08  Score=91.22  Aligned_cols=232  Identities=14%  Similarity=0.091  Sum_probs=194.8

Q ss_pred             hhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHH
Q 004369          346 NAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVV  425 (758)
Q Consensus       346 ~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~  425 (758)
                      +.|-.+|.+           .|.+.+|.+-|+.-..+  .|-..||..+-.+|.+..+++.|..++.+-++. ++.|+..
T Consensus       227 ~Q~gkCylr-----------Lgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~  292 (478)
T KOG1129|consen  227 QQMGKCYLR-----------LGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTY  292 (478)
T ss_pred             HHHHHHHHH-----------hcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhh
Confidence            567788999           99999999999988876  566678888999999999999999999988875 4667777


Q ss_pred             HhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 004369          426 GTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNA  502 (758)
Q Consensus       426 ~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~  502 (758)
                      ..-....+-..++.++|.++++...+   .|+.+...+..+|.-.++++-|+..|++++..|+. +...|..+.-+|...
T Consensus       293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~ya  371 (478)
T KOG1129|consen  293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYA  371 (478)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhh
Confidence            77788889999999999999998764   35666667778899999999999999999999965 566788888899999


Q ss_pred             ccHHHHHHHHHHhhhhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHH
Q 004369          503 GMVYEALGYFEMMQKEYKIKPV--MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFY  578 (758)
Q Consensus       503 g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~  578 (758)
                      +.+|-++.-|++.... --.|+  ..+|-.|.....-.|++.-|...|+-. ...| +...++.|.-.-.+.|+++.|..
T Consensus       372 qQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars  450 (478)
T KOG1129|consen  372 QQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS  450 (478)
T ss_pred             cchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence            9999999999988763 34454  467888888888999999999999877 4445 56789999988899999999999


Q ss_pred             HHHHHhccCCCCchh
Q 004369          579 AAEQLLKLKPKDCES  593 (758)
Q Consensus       579 ~~~~~~~~~p~~~~~  593 (758)
                      ++..+....|+-.+.
T Consensus       451 ll~~A~s~~P~m~E~  465 (478)
T KOG1129|consen  451 LLNAAKSVMPDMAEV  465 (478)
T ss_pred             HHHHhhhhCcccccc
Confidence            999999988874433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=3.3e-05  Score=80.21  Aligned_cols=126  Identities=14%  Similarity=0.098  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCC-CCCH
Q 004369          455 ISWTSMITGFANHSLSHQALQLFE--------DMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKI-KPVM  525 (758)
Q Consensus       455 ~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~  525 (758)
                      +.--+++......|+++.|++++.        ...+.+-.|..+.  .+..-+.+.++-+.|..++.+...-+.. .+..
T Consensus       377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s  454 (652)
T KOG2376|consen  377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS  454 (652)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence            344445555566666777766666        4444444554443  3333455555555555555554432111 1111


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369          526 ----DHYMCLIDMFVRLGCIEEAFDFIKKM-DFE-PNEVIWSVFIAGCRRHGNMELGFYAAEQL  583 (758)
Q Consensus       526 ----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  583 (758)
                          ..+.-++..-.+.|+-++|..+++++ ... +|..+...++.+|+.. |.+.|+.+-+++
T Consensus       455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence                22333334445668888888888887 433 4677777777777765 466666665544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.80  E-value=2.6e-07  Score=92.37  Aligned_cols=240  Identities=14%  Similarity=0.017  Sum_probs=159.5

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRV  445 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~  445 (758)
                      .|++..++.-.. .....-..+..+...+.+++...|..+.+   ...+.+.. .|.......+...+...++-+.+..-
T Consensus        14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~   88 (290)
T PF04733_consen   14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEE   88 (290)
T ss_dssp             TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred             hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence            788888886655 32222222344555667777777776543   33333333 55655555555545444566667666


Q ss_pred             HHhcC-CC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcC
Q 004369          446 FVEMS-TR----TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYK  520 (758)
Q Consensus       446 ~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~  520 (758)
                      +++.. ..    +..........+...|++++|++++++-      .+.......+..+.+.++++.|.+.++.|.+   
T Consensus        89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---  159 (290)
T PF04733_consen   89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---  159 (290)
T ss_dssp             HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Confidence            65544 22    2222222223455679999999988652      3455566677889999999999999999964   


Q ss_pred             CCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHH
Q 004369          521 IKPVMDH---YMCLIDMFVRLGCIEEAFDFIKKM--DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYA  595 (758)
Q Consensus       521 ~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  595 (758)
                      +..|...   ..+.+..+.-.+.+.+|..+|+++  ...++..+.+.+..++...|++++|+.+++++++.+|.++.+..
T Consensus       160 ~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La  239 (290)
T PF04733_consen  160 IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA  239 (290)
T ss_dssp             CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence            3445322   233334333344799999999999  45568888999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCc-hhHHHHHHHhhh
Q 004369          596 MLLDIFVSAGRW-EDVAVVKNLTRE  619 (758)
Q Consensus       596 ~l~~~~~~~g~~-~~a~~~~~~m~~  619 (758)
                      .++-+....|+. +.+.+++..++.
T Consensus       240 Nliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  240 NLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHH
Confidence            999999999998 567788888876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=2.5e-05  Score=77.39  Aligned_cols=406  Identities=12%  Similarity=0.029  Sum_probs=237.6

Q ss_pred             ChhHHHHHHHHHhhcCChHHHHHHHhccCCC-CcchHHHHHHHHhhCC-ChhhHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004369          209 DTSVGNSLCSLYSTCGSLNSAIKAFNRIREK-NVMSWTTVIGACGENG-EAVQGLRFFSKMLSEGIQPNEFTLTSISSVC  286 (758)
Q Consensus       209 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~  286 (758)
                      +...-...+..|...++-+.|.....+.+.. ...--|.|+.-+-+.| +..++.--+.+....-+    .... .|.+.
T Consensus        96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp----~aL~-~i~~l  170 (564)
T KOG1174|consen   96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP----MALQ-VIEAL  170 (564)
T ss_pred             cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc----hHHH-HHHHH
Confidence            3444556788888899999999999888874 3334444444443333 22233333333332210    0000 00010


Q ss_pred             cccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHHHccCCC-----CCeeechhHHHHHhhhchhh
Q 004369          287 GTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKC--GLVDEAQKLFDGMSH-----VNLVTWNAMIAGHAQMMDLA  359 (758)
Q Consensus       287 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~  359 (758)
                      .+.+ +..++.--..|-...++++......-+.+|+.+  ++-..|...|-.+..     .|+.....+...+..     
T Consensus       171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~-----  244 (564)
T KOG1174|consen  171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYY-----  244 (564)
T ss_pred             HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhh-----
Confidence            0000 000001111111222344444444444444443  333333333322221     344556666777777     


Q ss_pred             hchhhcCCChhHHHHHHHHhHhCCCCCCHHH-HHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCC
Q 004369          360 KDDLSAHNGGTEALSIFSKLNSSGMKPDLYT-FSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGR  438 (758)
Q Consensus       360 ~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~  438 (758)
                            .|+.++|...|++.+..  .|+..+ .....-.+.+.|+.+....+...+....- -....|-.-........+
T Consensus       245 ------~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~  315 (564)
T KOG1174|consen  245 ------NGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKK  315 (564)
T ss_pred             ------hcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhh
Confidence                  89999999999887653  444332 11111223556677776666655544220 111111111122233567


Q ss_pred             HHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccccHHHHHHHHHH
Q 004369          439 IERASRVFVEMSTR---TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRP-NQVTFVGALAACSNAGMVYEALGYFEM  514 (758)
Q Consensus       439 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~  514 (758)
                      ++.|+.+-++....   ++..+-.-...+.+.|+.++|.-.|+..+.  +.| +...|..|+.+|...|++.+|.-.-+.
T Consensus       316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~  393 (564)
T KOG1174|consen  316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANW  393 (564)
T ss_pred             HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence            78888877776543   444444445677788999999999998877  454 467899999999999999998877766


Q ss_pred             hhhhcCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369          515 MQKEYKIKPVMDHYMCLI-DMFV-RLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD  590 (758)
Q Consensus       515 ~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  590 (758)
                      ..+.  +..+..+...+. +.+. ...--|+|.+++++. .++|+ ....+.+...|...|..+.+..++++.+...|++
T Consensus       394 ~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~  471 (564)
T KOG1174|consen  394 TIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV  471 (564)
T ss_pred             HHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence            6552  233444443332 2222 112347788888887 77886 4567788888999999999999999999988875


Q ss_pred             chhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 004369          591 CESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAK  665 (758)
Q Consensus       591 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~  665 (758)
                       ...+.|++++...+.+.+|...+.....                          ..|+.+....-+..|.++|+
T Consensus       472 -~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  472 -NLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             -HHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHHHHHHHHHhccC
Confidence             7888999999999999999988887764                          45666665555655665554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.77  E-value=2.8e-06  Score=77.89  Aligned_cols=195  Identities=14%  Similarity=0.038  Sum_probs=115.6

Q ss_pred             HHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCH
Q 004369          394 ILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLS  470 (758)
Q Consensus       394 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~  470 (758)
                      +.-.|...|+...|+.-++.+++.. +.+..++..+...|.+.|..+.|.+-|++..   ..+-...|....-+|..|++
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~  119 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP  119 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence            3445566666666666666666653 3445566666666677777777766666543   33445555566666666677


Q ss_pred             HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004369          471 HQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIK  549 (758)
Q Consensus       471 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  549 (758)
                      ++|...|++....-.-|. ..||..+.-+-.+.|+.+.|..+|++..+.  .+........+.+...+.|++-+|..+++
T Consensus       120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence            777777766665432222 345666655556667777777776666541  11223445556666666677777766666


Q ss_pred             Hc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369          550 KM--DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       550 ~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  591 (758)
                      ..  ...++..+....+..-...||.+.+-+.-.++.+..|...
T Consensus       198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~  241 (250)
T COG3063         198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE  241 (250)
T ss_pred             HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence            65  3335555555555555566666666666666666666543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=2.9e-07  Score=94.94  Aligned_cols=218  Identities=13%  Similarity=0.082  Sum_probs=169.7

Q ss_pred             hcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHH
Q 004369          399 SRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQ  475 (758)
Q Consensus       399 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~  475 (758)
                      .+.|++.+|.-.|+..++.. +.+...|-.|....+..++-..|+..+++..+   .|....-+|.-.|...|.-.+|+.
T Consensus       296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            34566777777777777664 55677888888888888888888888887653   455677777778888898899999


Q ss_pred             HHHHHHHcCCC--------CCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004369          476 LFEDMLLAGVR--------PNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDF  547 (758)
Q Consensus       476 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  547 (758)
                      +++.-+....+        ++..+-..  ........+....++|-.+....+..+|.+++.+|.-+|--.|.+++|.+.
T Consensus       375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc  452 (579)
T KOG1125|consen  375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC  452 (579)
T ss_pred             HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence            98887653211        01000000  122233345566677777766567678888999999999999999999999


Q ss_pred             HHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          548 IKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       548 ~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      |+.+ ..+| |..+||-|...++...+.++|+.+|.+++++.|.-..+...|+-.|...|.++||.+.+-....
T Consensus       453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            9998 8888 6778999999999999999999999999999999999999999999999999999998877655

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=6.6e-05  Score=80.57  Aligned_cols=81  Identities=16%  Similarity=0.091  Sum_probs=58.6

Q ss_pred             hHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 004369          243 SWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYL  322 (758)
Q Consensus       243 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  322 (758)
                      .|.-...-+-..|+.+.|+.+|.....         |-++++..+-.|+.++|.++-++      .-|......|.++|-
T Consensus       914 L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YE  978 (1416)
T KOG3617|consen  914 LYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYE  978 (1416)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhh
Confidence            333333444457888888888887654         55667777778888888877654      345666677888999


Q ss_pred             hcCCHHHHHHHHccCC
Q 004369          323 KCGLVDEAQKLFDGMS  338 (758)
Q Consensus       323 ~~g~~~~A~~~~~~m~  338 (758)
                      ..|++.+|...|-+..
T Consensus       979 n~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  979 NDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            9999999988887664

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=1.8e-05  Score=81.47  Aligned_cols=216  Identities=13%  Similarity=0.092  Sum_probs=144.9

Q ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChh----------HHHHH
Q 004369          391 FSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLI----------SWTSM  460 (758)
Q Consensus       391 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~l  460 (758)
                      ...+.++.-+..+++.+.+-+...++..  .+..-++....+|...|.+.++...-....+.+-.          +...+
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~  304 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL  304 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            3455666666677777877777777654  56666777777888888777766655443322111          22234


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHH-HHHHHHHHHHHcC
Q 004369          461 ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMD-HYMCLIDMFVRLG  539 (758)
Q Consensus       461 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g  539 (758)
                      ..+|.+.++++.|+..|.+....-..||..+         +....+++....+...   -+.|... -.-.=...+.+.|
T Consensus       305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g  372 (539)
T KOG0548|consen  305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG  372 (539)
T ss_pred             hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence            4467777888999999988776555554322         2233344444333332   2334321 1112256677888


Q ss_pred             CHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369          540 CIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLT  617 (758)
Q Consensus       540 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  617 (758)
                      ++.+|++.+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+.+...
T Consensus       373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea  452 (539)
T KOG0548|consen  373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA  452 (539)
T ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888887 5556 66778888888888888888888888888888888888888888888888888888888877


Q ss_pred             hhC
Q 004369          618 REE  620 (758)
Q Consensus       618 ~~~  620 (758)
                      .+.
T Consensus       453 le~  455 (539)
T KOG0548|consen  453 LEL  455 (539)
T ss_pred             Hhc
Confidence            663

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.68  E-value=0.0008  Score=80.79  Aligned_cols=406  Identities=9%  Similarity=-0.017  Sum_probs=237.3

Q ss_pred             hHHHHHHHHHHHcCCC--C-C----hhhHHHHHHHhccc----CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCC
Q 004369          157 ELAIHVFLDMLEAGNY--P-T----NVTLGTALTACSSL----ESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGS  225 (758)
Q Consensus       157 ~~A~~~~~~m~~~g~~--p-~----~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~  225 (758)
                      +.+.+.++++...|+.  | +    .+.|+.++..+...    .+.+...++|..               ....|...|+
T Consensus       292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~lh~r---------------aa~~~~~~g~  356 (903)
T PRK04841        292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPELHRA---------------AAEAWLAQGF  356 (903)
T ss_pred             CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHHHHH---------------HHHHHHHCCC
Confidence            3456667777766641  1 1    24566666654432    122333334333               3344666777


Q ss_pred             hHHHHHHHhccCCCCcch--HHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHH
Q 004369          226 LNSAIKAFNRIREKNVMS--WTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGI  303 (758)
Q Consensus       226 ~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~  303 (758)
                      +.+|..........+...  ...........|+++.+..++..+.......+..........+...++.+.+..++..+.
T Consensus       357 ~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~  436 (903)
T PRK04841        357 PSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAE  436 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            777777666655432211  111123344567777777777665322111122222333344456688888888887765


Q ss_pred             HhCCC------Cc--hhHHHHHHHHHHhcCCHHHHHHHHccCCC----CCe----eechhHHHHHhhhchhhhchhhcCC
Q 004369          304 KLGYA------SN--LRVRNSIMYLYLKCGLVDEAQKLFDGMSH----VNL----VTWNAMIAGHAQMMDLAKDDLSAHN  367 (758)
Q Consensus       304 ~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~~~~~~~~~~l~~~g  367 (758)
                      ..--.      +.  ......+...+...|++++|...+++...    .+.    ..++.+...+..           .|
T Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~-----------~G  505 (903)
T PRK04841        437 QELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC-----------KG  505 (903)
T ss_pred             HhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-----------cC
Confidence            43111      11  12223344556788999999988877532    111    122333344445           89


Q ss_pred             ChhHHHHHHHHhHhC----CC-CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHc----CCC---ChHHHHhHHhhhHHh
Q 004369          368 GGTEALSIFSKLNSS----GM-KPDLYTFSSILTICSRLVALEQGEQIHALTLKT----GFL---SDVVVGTALVNMYKK  435 (758)
Q Consensus       368 ~~~~A~~l~~~m~~~----g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~---~~~~~~~~Li~~y~~  435 (758)
                      ++++|...+.+....    |- .+...++..+...+...|+++.|...+......    +..   .....+..+...+..
T Consensus       506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  585 (903)
T PRK04841        506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE  585 (903)
T ss_pred             CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence            999999999887642    11 111234445556778889999999988776542    221   123345556667777


Q ss_pred             cCCHHHHHHHHHhcCC------C--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHhc
Q 004369          436 CGRIERASRVFVEMST------R--TLISWTSMITGFANHSLSHQALQLFEDMLLAGVR-PNQVTF-----VGALAACSN  501 (758)
Q Consensus       436 ~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~~  501 (758)
                      .|++++|...+++...      +  ....+..+...+...|++++|...+++.....-. .....+     ...+..+..
T Consensus       586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (903)
T PRK04841        586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM  665 (903)
T ss_pred             hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence            8999999888877531      1  1234555666778899999999998887552111 111111     011233445


Q ss_pred             cccHHHHHHHHHHhhhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHHc
Q 004369          502 AGMVYEALGYFEMMQKEYKIKPV---MDHYMCLIDMFVRLGCIEEAFDFIKKM-------DFEPN-EVIWSVFIAGCRRH  570 (758)
Q Consensus       502 ~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~  570 (758)
                      .|+.+.|.+.+...... .....   ...+..+..++...|+.++|...+++.       +..++ ..+...+..++...
T Consensus       666 ~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~  744 (903)
T PRK04841        666 TGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ  744 (903)
T ss_pred             CCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence            78889998887765431 11111   111345677888999999998888876       22222 23566677788899


Q ss_pred             CChhHHHHHHHHHhccCCC
Q 004369          571 GNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       571 g~~~~a~~~~~~~~~~~p~  589 (758)
                      |+.++|...+++++++...
T Consensus       745 G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        745 GRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             CCHHHHHHHHHHHHHHhCc
Confidence            9999999999999987644

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.68  E-value=3.1e-05  Score=74.89  Aligned_cols=208  Identities=15%  Similarity=0.152  Sum_probs=123.9

Q ss_pred             HHHHHhhcCChHHHHHHHhccCCCCcchHHHHH---HHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCh
Q 004369          216 LCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVI---GACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSL  292 (758)
Q Consensus       216 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~  292 (758)
                      |...+.-.|++.+|+.-|....+-|+..|-++.   ..|...|+...|+.=|.+.++  .+||-..-.            
T Consensus        44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR------------  109 (504)
T KOG0624|consen   44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR------------  109 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH------------
Confidence            344455567788888888877777777777664   456677777777777776665  345532110            


Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHH
Q 004369          293 RVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEA  372 (758)
Q Consensus       293 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A  372 (758)
                                ++.            ...+.|.|.++.|..-|+.+.+.++.                      +|...+|
T Consensus       110 ----------iQR------------g~vllK~Gele~A~~DF~~vl~~~~s----------------------~~~~~ea  145 (504)
T KOG0624|consen  110 ----------IQR------------GVVLLKQGELEQAEADFDQVLQHEPS----------------------NGLVLEA  145 (504)
T ss_pred             ----------HHh------------chhhhhcccHHHHHHHHHHHHhcCCC----------------------cchhHHH
Confidence                      011            12345677777777777776542211                      2222222


Q ss_pred             HHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC--
Q 004369          373 LSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS--  450 (758)
Q Consensus       373 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~--  450 (758)
                      .+-+....+      .......+..+...|+...+......+++.. +.|...+..-...|...|++..|..-++...  
T Consensus       146 qskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL  218 (504)
T KOG0624|consen  146 QSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL  218 (504)
T ss_pred             HHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            221111111      0112223334455567777777766666643 5577777777788888888888876655443  


Q ss_pred             -CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004369          451 -TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV  490 (758)
Q Consensus       451 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  490 (758)
                       ..+....--+-..+...|+.+.++...++-++  +.||..
T Consensus       219 s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK  257 (504)
T KOG0624|consen  219 SQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK  257 (504)
T ss_pred             cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence             44555666666677778888888888887776  577754

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.66  E-value=0.00031  Score=74.59  Aligned_cols=256  Identities=14%  Similarity=0.160  Sum_probs=146.0

Q ss_pred             HHhcCCHHHHHHHHccCCCCCee--echhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 004369          321 YLKCGLVDEAQKLFDGMSHVNLV--TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTIC  398 (758)
Q Consensus       321 ~~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~  398 (758)
                      -....++.+|..+++.+++.++.  -|.-+...|+.           .|+++.|.++|.+.-         .+.-.|..|
T Consensus       742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan-----------~~dfe~ae~lf~e~~---------~~~dai~my  801 (1636)
T KOG3616|consen  742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYAN-----------KGDFEIAEELFTEAD---------LFKDAIDMY  801 (1636)
T ss_pred             HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhcc-----------chhHHHHHHHHHhcc---------hhHHHHHHH
Confidence            33445555555555555543332  24444445555           556666655554321         123344555


Q ss_pred             hcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 004369          399 SRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFE  478 (758)
Q Consensus       399 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  478 (758)
                      .+.|+++.|.++-.+.  .|.......|-+-..-.-+.|++.+|++++-.+..|+.     -|..|-++|..+..+.+.+
T Consensus       802 ~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~  874 (1636)
T KOG3616|consen  802 GKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVE  874 (1636)
T ss_pred             hccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHH
Confidence            5666665555443322  12233444455555555677888888888877777764     3567778888888777776


Q ss_pred             HHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCC-C
Q 004369          479 DMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFE-P  555 (758)
Q Consensus       479 ~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p  555 (758)
                      +-     .|+  ..|...+..-+...|++..|...|-+..          -|.+-+++|-..+.+++|.++-+.-|-. .
T Consensus       875 k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~  939 (1636)
T KOG3616|consen  875 KH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANA  939 (1636)
T ss_pred             Hh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccH
Confidence            53     344  3455566666777888888887775553          2556677888888888887776654211 0


Q ss_pred             ---CHHHHHHH------HHHHHHcCChhHHH-------------HHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369          556 ---NEVIWSVF------IAGCRRHGNMELGF-------------YAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV  613 (758)
Q Consensus       556 ---~~~~~~~l------l~~~~~~g~~~~a~-------------~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  613 (758)
                         -...|..-      +..+-++|-++.|.             .+.+-..+  ..-+.+...++-.+-..|++++|.+-
T Consensus       940 ~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskh 1017 (1636)
T KOG3616|consen  940 EKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKH 1017 (1636)
T ss_pred             HHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHh
Confidence               01222211      12233444444443             33332222  22346777788888899999999776


Q ss_pred             HHHhhhC
Q 004369          614 KNLTREE  620 (758)
Q Consensus       614 ~~~m~~~  620 (758)
                      +-...+.
T Consensus      1018 yveaikl 1024 (1636)
T KOG3616|consen 1018 YVEAIKL 1024 (1636)
T ss_pred             hHHHhhc
Confidence            6655543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.64  E-value=1.1e-05  Score=86.68  Aligned_cols=251  Identities=15%  Similarity=0.116  Sum_probs=178.4

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCH-HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhc-----CCH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDL-YTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKC-----GRI  439 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~-----g~~  439 (758)
                      .|++++|++.+.+-..  .-+|. ..+......+.+.|+.++|..++..+++.+ +.+..-|..|..+..-.     .+.
T Consensus        17 ~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~   93 (517)
T PF12569_consen   17 AGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDV   93 (517)
T ss_pred             CCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccH
Confidence            9999999999977443  34454 445566677899999999999999999986 45666677777766332     256


Q ss_pred             HHHHHHHHhcCCCChh--HHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhh
Q 004369          440 ERASRVFVEMSTRTLI--SWTSMITGFANHSL-SHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQ  516 (758)
Q Consensus       440 ~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~  516 (758)
                      +....+++++....+.  ....+.-.+..... -..+..++..+...|+++   +|+.|-.-|......+-..+++....
T Consensus        94 ~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~  170 (517)
T PF12569_consen   94 EKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYV  170 (517)
T ss_pred             HHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHH
Confidence            7777888876533221  11111111221111 235556677778888654   44555545555555555555555543


Q ss_pred             hhc-------------CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHH
Q 004369          517 KEY-------------KIKPVM--DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYA  579 (758)
Q Consensus       517 ~~~-------------~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~  579 (758)
                      ...             .-.|+.  .++.-+...|-..|++++|++++++. ...|. +..|..-...+.+.|++++|.+.
T Consensus       171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~  250 (517)
T PF12569_consen  171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA  250 (517)
T ss_pred             HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            321             113444  34466688899999999999999988 77775 55677888889999999999999


Q ss_pred             HHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369          580 AEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL  622 (758)
Q Consensus       580 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  622 (758)
                      ++.+.++++.|.....-.+..+.++|+.++|.++.......+.
T Consensus       251 ~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~  293 (517)
T PF12569_consen  251 MDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV  293 (517)
T ss_pred             HHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence            9999999999999989999999999999999999998876654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.63  E-value=2e-05  Score=84.77  Aligned_cols=126  Identities=15%  Similarity=0.124  Sum_probs=80.6

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHH
Q 004369          491 TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGC  567 (758)
Q Consensus       491 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~  567 (758)
                      ++..+...|.+.|++++|.++.+..++   ..|+ ++.|..-...|-+.|++++|.+.++.. ...+ |..+-+-....+
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence            334445556677777777777777765   2454 667777777777777777777777776 4444 555555566666


Q ss_pred             HHcCChhHHHHHHHHHhccC--CCC-------chhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          568 RRHGNMELGFYAAEQLLKLK--PKD-------CESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       568 ~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      .+.|+.++|...+....+.+  |..       ......-+.+|.+.|++..|.+.+..+.+
T Consensus       273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            77777777777777665544  211       11233456777788887777776655543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.61  E-value=3.8e-06  Score=84.11  Aligned_cols=160  Identities=16%  Similarity=0.119  Sum_probs=116.1

Q ss_pred             HHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---
Q 004369          425 VGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN---  501 (758)
Q Consensus       425 ~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---  501 (758)
                      +.-....+|...|++++|++++.+.  .+.......+..|.+.++++.|.+.++.|.+.  ..| .+...+..++..   
T Consensus       104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~  178 (290)
T PF04733_consen  104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLAT  178 (290)
T ss_dssp             HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHh
Confidence            3333445567788888888887765  45666667788889999999999999999863  344 334444444432   


Q ss_pred             -cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCh-hHHH
Q 004369          502 -AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNM-ELGF  577 (758)
Q Consensus       502 -~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~  577 (758)
                       .+.+.+|..+|+++..  ...++..+.+.+.-+....|++++|.+++.+. ...| |..++-.++......|+. +.+.
T Consensus       179 g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~  256 (290)
T PF04733_consen  179 GGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE  256 (290)
T ss_dssp             TTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred             CchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence             2368999999999876  44577888999999999999999999999887 5556 566777788888888877 6678


Q ss_pred             HHHHHHhccCCCCc
Q 004369          578 YAAEQLLKLKPKDC  591 (758)
Q Consensus       578 ~~~~~~~~~~p~~~  591 (758)
                      +...++....|+.+
T Consensus       257 ~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  257 RYLSQLKQSNPNHP  270 (290)
T ss_dssp             HHHHHCHHHTTTSH
T ss_pred             HHHHHHHHhCCCCh
Confidence            88888888888864

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.58  E-value=1.5e-06  Score=77.51  Aligned_cols=123  Identities=13%  Similarity=0.051  Sum_probs=94.8

Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CC
Q 004369          475 QLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DF  553 (758)
Q Consensus       475 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~  553 (758)
                      .+|++..+  +.|+.  +.....++...|++++|...|+.+..  --+.+...|..+..++.+.|++++|...|++. ..
T Consensus        14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            44555554  45554  44556677888888888888888865  22335777888888888999999999998888 55


Q ss_pred             CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh
Q 004369          554 EP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS  603 (758)
Q Consensus       554 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  603 (758)
                      .| +...|..+..++...|+.++|...+++++++.|+++..+...+++...
T Consensus        88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            66 677788888888899999999999999999999988888877776543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.58  E-value=5.4e-05  Score=79.89  Aligned_cols=252  Identities=8%  Similarity=-0.059  Sum_probs=157.0

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCH-HHHHH---HHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDL-YTFSS---ILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIER  441 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~---ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~  441 (758)
                      .|++++|.+.+++..+.  .|+. ..+..   ........+..+.+.+.... .....+........+...+...|++++
T Consensus        56 ~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~  132 (355)
T cd05804          56 AGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDR  132 (355)
T ss_pred             cCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence            78899999999888775  3433 33331   11111223445555554443 111223334455567778889999999


Q ss_pred             HHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccccHHHHHHHHHHh
Q 004369          442 ASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGV-RPNQ--VTFVGALAACSNAGMVYEALGYFEMM  515 (758)
Q Consensus       442 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~  515 (758)
                      |...+++..   +.+...+..+...|...|++++|+..+++...... .|+.  ..|..+...+...|++++|..+++.+
T Consensus       133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999998876   33566788888899999999999999998877432 2332  23556777788999999999999987


Q ss_pred             hhhcCCCCCHHHH-H--HHHHHHHHcCCHHHHHHH---HHHc-CCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369          516 QKEYKIKPVMDHY-M--CLIDMFVRLGCIEEAFDF---IKKM-DFEP---NEVIWSVFIAGCRRHGNMELGFYAAEQLLK  585 (758)
Q Consensus       516 ~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  585 (758)
                      .......+..... +  .++..+...|..+.+...   .... +..|   ..........++...|+.+.|...++.+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~  292 (355)
T cd05804         213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG  292 (355)
T ss_pred             hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            5421211222111 1  333444444533222222   1111 1111   122223566677788999999998888765


Q ss_pred             cC-C--------CCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          586 LK-P--------KDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       586 ~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      .. .        .........+.++...|++++|.+.+....+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         293 RASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            32 1        13455677788899999999999998887764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.53  E-value=7.5e-06  Score=77.33  Aligned_cols=146  Identities=6%  Similarity=0.039  Sum_probs=110.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCC
Q 004369          461 ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGC  540 (758)
Q Consensus       461 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  540 (758)
                      +..|...|+++......+++..    |.        ..+...++.+++...++...+  .-+.+...|..|...|...|+
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~   88 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND   88 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence            3456777777665443322211    11        012235666777777777665  334568889999999999999


Q ss_pred             HHHHHHHHHHc-CCCC-CHHHHHHHHHHH-HHcCC--hhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHH
Q 004369          541 IEEAFDFIKKM-DFEP-NEVIWSVFIAGC-RRHGN--MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKN  615 (758)
Q Consensus       541 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~  615 (758)
                      +++|...+++. ...| +...+..+..++ ...|+  .++|.++++++++.+|+++.++..|+..+...|++++|...++
T Consensus        89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~  168 (198)
T PRK10370         89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ  168 (198)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999988 6667 667788888764 66676  5899999999999999999999999999999999999999999


Q ss_pred             HhhhC
Q 004369          616 LTREE  620 (758)
Q Consensus       616 ~m~~~  620 (758)
                      .+.+.
T Consensus       169 ~aL~l  173 (198)
T PRK10370        169 KVLDL  173 (198)
T ss_pred             HHHhh
Confidence            98764

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.53  E-value=8.2e-06  Score=80.35  Aligned_cols=180  Identities=11%  Similarity=0.053  Sum_probs=120.3

Q ss_pred             ChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---Ch---hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----H
Q 004369          421 SDVVVGTALVNMYKKCGRIERASRVFVEMSTR---TL---ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ----V  490 (758)
Q Consensus       421 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~  490 (758)
                      .....+..++..|.+.|++++|...|+++...   +.   ..|..+..+|...|++++|+..++++.+.  .|+.    .
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~  108 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY  108 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence            34556667777788888888888888876532   22   35677777888888888888888888774  3331    1


Q ss_pred             HHHHHHHHHhcc--------ccHHHHHHHHHHhhhhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHH
Q 004369          491 TFVGALAACSNA--------GMVYEALGYFEMMQKEYKIKPVMD-HYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWS  561 (758)
Q Consensus       491 t~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~  561 (758)
                      ++..+..++.+.        |++++|.+.|+.+.+.   .|+.. .+..+...    +......           .....
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~  170 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKEL  170 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHH
Confidence            344444445443        6777888888877653   23321 22111111    1111100           00112


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhccCCCC---chhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          562 VFIAGCRRHGNMELGFYAAEQLLKLKPKD---CESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      .+...+...|+++.|...++++++..|++   +..+..++.+|.+.|++++|...++.+..+
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45667888999999999999999987764   468899999999999999999998887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.51  E-value=2.6e-06  Score=74.47  Aligned_cols=118  Identities=6%  Similarity=0.054  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369          525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV  602 (758)
Q Consensus       525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  602 (758)
                      .+..-.+...+...|++++|.++|+-. .+.| +..-|-.|...|...|++++|+..+.++..++|+|+..+..++.+|.
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            445556677788999999999999988 6677 66779999999999999999999999999999999999999999999


Q ss_pred             hCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 004369          603 SAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAK  665 (758)
Q Consensus       603 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~  665 (758)
                      ..|+.++|++.|+......                       ..+|+..++.++.+.....+.
T Consensus       115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~  154 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS  154 (157)
T ss_pred             HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence            9999999999999887621                       156777877777777666654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.50  E-value=0.00021  Score=78.68  Aligned_cols=499  Identities=13%  Similarity=0.054  Sum_probs=243.8

Q ss_pred             hHHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcC-CCCChhhHHHHHHHh
Q 004369          110 FVMTFLVNVYGKCGNMEEAQKVFDNLPR---INVVSWTSLISGYVQNSQPELAIHVFLDMLEAG-NYPTNVTLGTALTAC  185 (758)
Q Consensus       110 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~  185 (758)
                      -.|..|-..|...-+...|.+.|++.-+   -+..+|......|++..+++.|..+.-..-+.. ...-...|...--.+
T Consensus       493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy  572 (1238)
T KOG1127|consen  493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY  572 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence            4567777777777777778888877654   345667778888888888888887733222211 000111122222234


Q ss_pred             cccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHH---HHHhhCCChhhHHH
Q 004369          186 SSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVI---GACGENGEAVQGLR  262 (758)
Q Consensus       186 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~  262 (758)
                      -..++...+..-++...+.. +.|...|..|..+|.++|.+..|.++|.+...-++.+|-.--   ..-+..|.+.+|+.
T Consensus       573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald  651 (1238)
T KOG1127|consen  573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD  651 (1238)
T ss_pred             cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence            55667777777777766643 246677888888888888888888888777664444333211   22345677777777


Q ss_pred             HHHHHHHC------CCCCChhhHHHHHHHHcccCCh-------HHHHHHHHHHHHh--------------------CCCC
Q 004369          263 FFSKMLSE------GIQPNEFTLTSISSVCGTMLSL-------RVGAQVHSLGIKL--------------------GYAS  309 (758)
Q Consensus       263 l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~--------------------g~~~  309 (758)
                      .+......      +..--..++..+...+...|-.       +...+.+...+..                    .++|
T Consensus       652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~  731 (1238)
T KOG1127|consen  652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP  731 (1238)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence            66655321      1111112222222222111111       1111111111100                    1234


Q ss_pred             chhHHHHHHHHHH----hcCCH---H---HHHHHHccCCC--CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHH
Q 004369          310 NLRVRNSIMYLYL----KCGLV---D---EAQKLFDGMSH--VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFS  377 (758)
Q Consensus       310 ~~~~~~~li~~~~----~~g~~---~---~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~  377 (758)
                      + .+...++..+.    +.+..   |   -+.+.+-.-..  .+..+|..++..|.+..-..+..   ..+...|+.-+.
T Consensus       732 ~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et---~~~~~~Ai~c~K  807 (1238)
T KOG1127|consen  732 S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGET---MKDACTAIRCCK  807 (1238)
T ss_pred             c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCc---chhHHHHHHHHH
Confidence            4 22222222222    22222   1   11111111111  23567777766665522211100   122246777777


Q ss_pred             HhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcC-CCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC---CC
Q 004369          378 KLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTG-FLSDVVVGTALVNMYKKCGRIERASRVFVEMST---RT  453 (758)
Q Consensus       378 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~  453 (758)
                      +.++.  ..|...+-..+......|++..+.  |+.+...- .+....+|..+.-.+.+..+++-|...|.+...   .|
T Consensus       808 kaV~L--~ann~~~WnaLGVlsg~gnva~aQ--HCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n  883 (1238)
T KOG1127|consen  808 KAVSL--CANNEGLWNALGVLSGIGNVACAQ--HCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN  883 (1238)
T ss_pred             HHHHH--hhccHHHHHHHHHhhccchhhhhh--hhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchh
Confidence            66653  333333333444445555554443  44443322 244566777777778888888888888877663   24


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHH--HH--cCCCCC-----------------------------------------
Q 004369          454 LISWTSMITGFANHSLSHQALQLFEDM--LL--AGVRPN-----------------------------------------  488 (758)
Q Consensus       454 ~~~~~~li~~~~~~g~~~~A~~~~~~m--~~--~g~~p~-----------------------------------------  488 (758)
                      .+.|-.+.......|+.-+++.+|..-  ..  .|-.|+                                         
T Consensus       884 l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~  963 (1238)
T KOG1127|consen  884 LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGH  963 (1238)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcC
Confidence            455655544444555555555555441  11  111122                                         


Q ss_pred             ---HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHcCCCCCHHHHH
Q 004369          489 ---QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMC----LIDMFVRLGCIEEAFDFIKKMDFEPNEVIWS  561 (758)
Q Consensus       489 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~  561 (758)
                         ...|........+.+.+..|.+...+...-...+-+...|+.    ....+...|.++.|..-+...+..-|..+-.
T Consensus       964 p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~g 1043 (1238)
T KOG1127|consen  964 PQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRG 1043 (1238)
T ss_pred             cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhh
Confidence               333444433344444444444443333221111222233332    2233444455555544444332222333332


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhccCCCCch---hHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369          562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDCE---SYAMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                      +=+.. .-.++++++.+.|++++.+-..+..   ....++......+.-+.|....-+..
T Consensus      1044 t~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1044 TDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred             hhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence            22222 3357888888899998886544333   22333444455566666665544433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.50  E-value=5.5e-06  Score=73.93  Aligned_cols=106  Identities=8%  Similarity=-0.135  Sum_probs=92.4

Q ss_pred             HHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369          510 GYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK  587 (758)
Q Consensus       510 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  587 (758)
                      .+++...   .+.|+  .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus        14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            3444443   34455  3556788999999999999999998 6667 67889999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          588 PKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       588 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      |+++..+..++.++...|++++|...++...+.
T Consensus        89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359         89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998764

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.49  E-value=2e-05  Score=89.21  Aligned_cols=199  Identities=17%  Similarity=0.166  Sum_probs=168.6

Q ss_pred             CChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004369          420 LSDVVVGTALVNMYKKCGRIERASRVFVEMSTR--------TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVT  491 (758)
Q Consensus       420 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  491 (758)
                      |-+...|-..|......+++++|++++++....        -...|.++++.-...|.-+...++|+++.+.  .-....
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence            445667777777788889999999999887632        2358999999888899889999999999873  223557


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC---CHHHHHHHHHHH
Q 004369          492 FVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP---NEVIWSVFIAGC  567 (758)
Q Consensus       492 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~  567 (758)
                      |..|...|.+.+.+++|.++++.|.++++  .....|...++.+.+..+-+.|..++.++ ..-|   ......-.+..-
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            88899999999999999999999999777  56688999999999999999999999887 4334   344566667777


Q ss_pred             HHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369          568 RRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL  622 (758)
Q Consensus       568 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  622 (758)
                      .++|+.+.+..+|+.++...|.....|..++++=.+.|..+.++.+|++....++
T Consensus      1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence            8999999999999999999999999999999999999999999999999988765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.48  E-value=0.0005  Score=74.07  Aligned_cols=331  Identities=14%  Similarity=0.155  Sum_probs=185.0

Q ss_pred             HHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHH
Q 004369          219 LYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQV  298 (758)
Q Consensus       219 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  298 (758)
                      .....|.+++|+.++.+-+.     |..|=..|-..|.+++|+++-+.=-+-.++   .||..-..-+...++.+.|.+.
T Consensus       809 LAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Aley  880 (1416)
T KOG3617|consen  809 LAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEY  880 (1416)
T ss_pred             HHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHH
Confidence            34466889999999987764     333445566689999998886653222222   3444444445556777777777


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHH
Q 004369          299 HSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSK  378 (758)
Q Consensus       299 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~  378 (758)
                      |+..-..    -..+..    ++.  .+......+.+.+.++....|-   ..|..          ..|+.+.|+.+|..
T Consensus       881 yEK~~~h----afev~r----mL~--e~p~~~e~Yv~~~~d~~L~~WW---gqYlE----------S~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  881 YEKAGVH----AFEVFR----MLK--EYPKQIEQYVRRKRDESLYSWW---GQYLE----------SVGEMDAALSFYSS  937 (1416)
T ss_pred             HHhcCCh----HHHHHH----HHH--hChHHHHHHHHhccchHHHHHH---HHHHh----------cccchHHHHHHHHH
Confidence            7643211    111111    111  1233334444555555433321   11222          18999999999987


Q ss_pred             hHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHH
Q 004369          379 LNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWT  458 (758)
Q Consensus       379 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~  458 (758)
                      ...         |-++++..|-.|+.++|.+|-++      ..|....-.|..+|-..|++.+|..+|.+..     ++.
T Consensus       938 A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afs  997 (1416)
T KOG3617|consen  938 AKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFS  997 (1416)
T ss_pred             hhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHH
Confidence            654         55667777888999998887653      2366677788999999999999999998765     222


Q ss_pred             HHHHHHHhcC---------------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHH---------HHH
Q 004369          459 SMITGFANHS---------------LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGY---------FEM  514 (758)
Q Consensus       459 ~li~~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~---------~~~  514 (758)
                      .-|..+-.++               +.-.|-.+|++.   |...     .....-|-++|.+.+|+++         ++-
T Consensus       998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen  998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred             HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence            2232222222               122223333321   1111     1112235556666655543         333


Q ss_pred             hhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccC---CC--
Q 004369          515 MQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK---PK--  589 (758)
Q Consensus       515 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~--  589 (758)
                      +.++..-..|+...+--.+.+....++++|.+++-...      -|.--+..| ...++..-++..+.|.-..   |+  
T Consensus      1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~ 1142 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQ 1142 (1416)
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHH
Confidence            33433334456667777777777777888777765531      122222333 3444555555555553221   22  


Q ss_pred             -CchhHHHHHHHhhhCCCchhHHHHHH
Q 004369          590 -DCESYAMLLDIFVSAGRWEDVAVVKN  615 (758)
Q Consensus       590 -~~~~~~~l~~~~~~~g~~~~a~~~~~  615 (758)
                       .......++..|.++|.+..|.+-|.
T Consensus      1143 ~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1143 ERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHh
Confidence             12356678888888888777765443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=0.00025  Score=67.39  Aligned_cols=372  Identities=12%  Similarity=0.044  Sum_probs=178.3

Q ss_pred             HHHHHHHHhhcCChHHHHHHHhccCC--CCcchHHH-HHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHH--c
Q 004369          213 GNSLCSLYSTCGSLNSAIKAFNRIRE--KNVMSWTT-VIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVC--G  287 (758)
Q Consensus       213 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~  287 (758)
                      .+.|...|-...++..|...++.+..  |...-|.. -...+-+.+.+.+|+++...|...   |+...-..-+.+.  -
T Consensus        47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkY  123 (459)
T KOG4340|consen   47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKY  123 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhc
Confidence            33444455555555555555555543  22222221 123455667777777777766542   2211111111111  1


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC----CCeeechhHHHHHhhhchhhhchh
Q 004369          288 TMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH----VNLVTWNAMIAGHAQMMDLAKDDL  363 (758)
Q Consensus       288 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~~~l  363 (758)
                      ..+++..+..+.++...   +.+..+.+.......+.|+++.|.+-|+...+    ...+.||.-+..|.          
T Consensus       124 se~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~----------  190 (459)
T KOG4340|consen  124 SEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS----------  190 (459)
T ss_pred             ccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh----------
Confidence            22344444444433221   12333334444445566666666666665544    23344554444433          


Q ss_pred             hcCCChhHHHHHHHHhHhCCCCCCHHH----HHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCH
Q 004369          364 SAHNGGTEALSIFSKLNSSGMKPDLYT----FSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRI  439 (758)
Q Consensus       364 ~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~  439 (758)
                        .++++.|++...++++.|++-.+..    -.-.+.    ...+.....++..       .-+..+|.-...+.+.|+.
T Consensus       191 --~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~~lh~S-------al~eAfNLKaAIeyq~~n~  257 (459)
T KOG4340|consen  191 --SRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGNTLVLHQS-------ALVEAFNLKAAIEYQLRNY  257 (459)
T ss_pred             --hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcccchHHHHHH-------HHHHHhhhhhhhhhhcccH
Confidence              4566666666666666554321110    000000    0000000000000       0112333334456788999


Q ss_pred             HHHHHHHHhcCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 004369          440 ERASRVFVEMSTR-----TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEM  514 (758)
Q Consensus       440 ~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~  514 (758)
                      +.|.+.+..|+.+     |++|...+.-. -..+++.+..+-+.-+...+. -...||..++-.|++..-++-|-.++.+
T Consensus       258 eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  258 EAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            9999999999854     66776554322 123445555555555554432 2356899999999999999988887754


Q ss_pred             hhhhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCChhH----HHHHHHHHhccCC
Q 004369          515 MQKEYKIKPVMDHYMCLIDMFVRL-GCIEEAFDFIKKMDFEPNEVIWSVFIAGC-RRHGNMEL----GFYAAEQLLKLKP  588 (758)
Q Consensus       515 ~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~ll~~~-~~~g~~~~----a~~~~~~~~~~~p  588 (758)
                      -....-.-.+...|+ |++++.-+ -..++|++-++.....-....-..-+..- .++.+-++    +.+-+++.+++- 
T Consensus       336 n~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-  413 (459)
T KOG4340|consen  336 NAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY-  413 (459)
T ss_pred             CcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-
Confidence            321000011223333 34444433 35666666555441000000000111111 12222222    223344444433 


Q ss_pred             CCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          589 KDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       589 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                        ..+...-++.|++..++.-+.+.|....+
T Consensus       414 --LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve  442 (459)
T KOG4340|consen  414 --LPVLMAQAKIYWNLEDYPMVEKIFRKSVE  442 (459)
T ss_pred             --HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence              23556778889999999999999887665

>PLN02789 farnesyltranstransferase

Probab=98.46  E-value=5.4e-05  Score=76.89  Aligned_cols=217  Identities=12%  Similarity=0.053  Sum_probs=155.4

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcC-CHHHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCG-RIERASR  444 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g-~~~~A~~  444 (758)
                      .+++.+|+..|+.....                  .+..++|..+...+++.. +.+..+|+.....+.+.| ++++++.
T Consensus        33 ~~~~~~a~~~~ra~l~~------------------~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~   93 (320)
T PLN02789         33 TPEFREAMDYFRAVYAS------------------DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELD   93 (320)
T ss_pred             CHHHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHH
Confidence            45566666666665543                  345567777777776653 334556666666666777 5789999


Q ss_pred             HHHhcC---CCChhHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhc
Q 004369          445 VFVEMS---TRTLISWTSMITGFANHSLS--HQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEY  519 (758)
Q Consensus       445 ~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~  519 (758)
                      .++++.   .++..+|+.....+.+.|+.  ++++.+++++.+.. .-|..+|.....++.+.|+++++++.++++.+. 
T Consensus        94 ~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-  171 (320)
T PLN02789         94 FAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-  171 (320)
T ss_pred             HHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-
Confidence            988876   34556787666566666653  67899999998753 224678888888888999999999999999873 


Q ss_pred             CCCCCHHHHHHHHHHHHHc---CC----HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc----CChhHHHHHHHHHhcc
Q 004369          520 KIKPVMDHYMCLIDMFVRL---GC----IEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH----GNMELGFYAAEQLLKL  586 (758)
Q Consensus       520 ~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~  586 (758)
                       -.-+...|+.....+.+.   |.    .++++++..++ ...| |...|+.+...+...    ++..+|...+.+++..
T Consensus       172 -d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~  250 (320)
T PLN02789        172 -DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK  250 (320)
T ss_pred             -CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence             233456666666555554   22    24677777555 6677 678899999998874    3456788999999999


Q ss_pred             CCCCchhHHHHHHHhhhC
Q 004369          587 KPKDCESYAMLLDIFVSA  604 (758)
Q Consensus       587 ~p~~~~~~~~l~~~~~~~  604 (758)
                      +|.++.+...|+++|+..
T Consensus       251 ~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        251 DSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             cCCcHHHHHHHHHHHHhh
Confidence            999999999999999864

>PF12854 PPR_1: PPR repeat

Probab=98.45  E-value=2.1e-07  Score=59.02  Aligned_cols=33  Identities=30%  Similarity=0.584  Sum_probs=25.4

Q ss_pred             CCCCchhHHHHHHHHhhcCCChHHHHHHHccCC
Q 004369          104 GSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLP  136 (758)
Q Consensus       104 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~  136 (758)
                      |+.||..+||.||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            667777777777777777777777777777774

>PF12854 PPR_1: PPR repeat

Probab=98.43  E-value=4e-07  Score=57.74  Aligned_cols=32  Identities=31%  Similarity=0.604  Sum_probs=26.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369          520 KIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM  551 (758)
Q Consensus       520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  551 (758)
                      |+.||..+|++||++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            67788888888888888888888888888877

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.41  E-value=8e-05  Score=81.87  Aligned_cols=387  Identities=10%  Similarity=0.013  Sum_probs=224.8

Q ss_pred             CCCCC-hhHHHHHHHHHhhcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCC-CCCChhhH
Q 004369          205 QTEDD-TSVGNSLCSLYSTCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEG-IQPNEFTL  279 (758)
Q Consensus       205 g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~  279 (758)
                      .+.++ ...|..|...|...-++..|.+.|++.-+   -|..++......|++...++.|..+.-.--+.. ...-...+
T Consensus       486 rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW  565 (1238)
T KOG1127|consen  486 RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENW  565 (1238)
T ss_pred             hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhh
Confidence            34444 35788899999988899999999998876   356788899999999999999999833222110 00011112


Q ss_pred             HHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhh
Q 004369          280 TSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLA  359 (758)
Q Consensus       280 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~  359 (758)
                      ...--.+.+.++...+..-|....+.. +.|...|..|..+|.++|++..|.++|++...-++.+|-.-...-..     
T Consensus       566 ~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~-----  639 (1238)
T KOG1127|consen  566 VQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVM-----  639 (1238)
T ss_pred             hhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHH-----
Confidence            223333455667777777777776655 56888999999999999999999999988876444443322111111     


Q ss_pred             hchhhcCCChhHHHHHHHHhHhC------CCCCCHHHHHHHHHHHhcccchHHH-------HHHHHHHHHcCCCChHHHH
Q 004369          360 KDDLSAHNGGTEALSIFSKLNSS------GMKPDLYTFSSILTICSRLVALEQG-------EQIHALTLKTGFLSDVVVG  426 (758)
Q Consensus       360 ~~~l~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~a-------~~i~~~~~~~~~~~~~~~~  426 (758)
                         .|..|.+.+|+..+......      +..--..++..+...+...|-...+       .+.+.-........+...|
T Consensus       640 ---ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~W  716 (1238)
T KOG1127|consen  640 ---ECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQW  716 (1238)
T ss_pred             ---HHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence               23389999999999887542      1111112222222222222222222       2222222222222222222


Q ss_pred             hHHhhhHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHH-HHhcCCH---H---HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004369          427 TALVNMYKKCGRIERASRVFVEMSTRTLI--SWTSMITG-FANHSLS---H---QALQLFEDMLLAGVRPNQVTFVGALA  497 (758)
Q Consensus       427 ~~Li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~  497 (758)
                      -.+.          .|..+|-... ++.+  .+..++.. +...+..   +   -+.+.+-.-++  ...+..+|..+..
T Consensus       717 i~as----------dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGi  783 (1238)
T KOG1127|consen  717 IVAS----------DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGI  783 (1238)
T ss_pred             HHHh----------HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhH
Confidence            2222          2333444333 3221  12222222 2222221   1   11111111111  1222334444433


Q ss_pred             HHhc-------cc-cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHH
Q 004369          498 ACSN-------AG-MVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGC  567 (758)
Q Consensus       498 a~~~-------~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~  567 (758)
                      .|.+       .+ +...|...+...++.  ...+...|+.|.- +...|++.-|..-|-+- -..| ...+|..+.-.|
T Consensus       784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGV-lsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~  860 (1238)
T KOG1127|consen  784 NYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLV  860 (1238)
T ss_pred             HHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHH-hhccchhhhhhhhhhhhhhccccchhheeccceeE
Confidence            3322       11 234566677666541  2233455555544 46667777777766554 3445 677899999889


Q ss_pred             HHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHH
Q 004369          568 RRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNL  616 (758)
Q Consensus       568 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  616 (758)
                      .+..|++-|..++.++..++|.|...+...+-+-...|+.-++..++..
T Consensus       861 l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  861 LENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             EecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988888888777888888887777766

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=0.00098  Score=69.02  Aligned_cols=167  Identities=19%  Similarity=0.128  Sum_probs=109.2

Q ss_pred             HhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccccHHH
Q 004369          429 LVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ-VTFVGALAACSNAGMVYE  507 (758)
Q Consensus       429 Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~  507 (758)
                      +...|.+.++++.|...|++.......     -....+....++++...+...-  +.|+. .-...-...+.+.|++..
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~  376 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE  376 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence            445666677777777777764421100     0111222334455554444433  34442 112222456778899999


Q ss_pred             HHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369          508 ALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNE-VIWSVFIAGCRRHGNMELGFYAAEQLLK  585 (758)
Q Consensus       508 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~  585 (758)
                      |...|.++++.  .+-|...|+...-+|.+.|.+.+|++=.+.. ...|+. ..|.-=..++....+++.|.+.|.+.++
T Consensus       377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999988873  3556788888889999999998888876665 556643 3344445556667789999999999999


Q ss_pred             cCCCCchhHHHHHHHhhhC
Q 004369          586 LKPKDCESYAMLLDIFVSA  604 (758)
Q Consensus       586 ~~p~~~~~~~~l~~~~~~~  604 (758)
                      .+|++......+.+++...
T Consensus       455 ~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  455 LDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             cCchhHHHHHHHHHHHHHh
Confidence            9999988888887777654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.40  E-value=0.00033  Score=73.89  Aligned_cols=193  Identities=9%  Similarity=-0.002  Sum_probs=110.3

Q ss_pred             HHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC-----Ch--hHHHHHHHHHH
Q 004369          393 SILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR-----TL--ISWTSMITGFA  465 (758)
Q Consensus       393 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~  465 (758)
                      .+...+...|++++|.+.++...+.. +.+...+..+...|...|++++|...+++..+.     +.  ..|..+...+.
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~  197 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL  197 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence            34445566677777777777666654 344566677777788888888888888775531     21  24556777788


Q ss_pred             hcCCHHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHhccccHHHHHHH--HHHhhhhcCC-CCCHHHHHHHHHHHHHc
Q 004369          466 NHSLSHQALQLFEDMLLAGV-RPNQVTF-V--GALAACSNAGMVYEALGY--FEMMQKEYKI-KPVMDHYMCLIDMFVRL  538 (758)
Q Consensus       466 ~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~~~a~~~--~~~~~~~~~~-~p~~~~~~~li~~~~~~  538 (758)
                      ..|++++|+.++++...... .+..... +  .++.-+...|..+.+.+.  .........- ..........+.++...
T Consensus       198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  277 (355)
T cd05804         198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA  277 (355)
T ss_pred             HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence            88888888888888754322 1112111 1  223333334433322222  1111110000 11112223566777888


Q ss_pred             CCHHHHHHHHHHc--CCCC---C------HHHHHHHHHHHHHcCChhHHHHHHHHHhcc
Q 004369          539 GCIEEAFDFIKKM--DFEP---N------EVIWSVFIAGCRRHGNMELGFYAAEQLLKL  586 (758)
Q Consensus       539 g~~~~A~~~~~~m--~~~p---~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  586 (758)
                      |+.++|..+++.+  ....   .      ....-....++...|+.+.|.+.+..++.+
T Consensus       278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999998877  1111   1      112222334456789999999998888764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.39  E-value=0.00017  Score=86.44  Aligned_cols=323  Identities=11%  Similarity=-0.046  Sum_probs=202.4

Q ss_pred             ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC----CC---eeechh-----HHHHHhhh
Q 004369          288 TMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH----VN---LVTWNA-----MIAGHAQM  355 (758)
Q Consensus       288 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~---~~~~~~-----li~~~~~~  355 (758)
                      ..|..+........+.......+..........+...|++++|..++.....    .+   ......     +-..+.. 
T Consensus       386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-  464 (903)
T PRK04841        386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN-  464 (903)
T ss_pred             hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh-
Confidence            3456666555555432111122233334455566778999998888875422    11   111111     1112233 


Q ss_pred             chhhhchhhcCCChhHHHHHHHHhHhCCCCCCH----HHHHHHHHHHhcccchHHHHHHHHHHHHc----CCC-ChHHHH
Q 004369          356 MDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDL----YTFSSILTICSRLVALEQGEQIHALTLKT----GFL-SDVVVG  426 (758)
Q Consensus       356 ~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~  426 (758)
                                .|++++|...+++....-...+.    .....+...+...|+++.|...+......    |.. ......
T Consensus       465 ----------~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~  534 (903)
T PRK04841        465 ----------DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL  534 (903)
T ss_pred             ----------CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence                      89999999999987763111222    23344555667889999999988777642    211 123455


Q ss_pred             hHHhhhHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC--HHH
Q 004369          427 TALVNMYKKCGRIERASRVFVEMST-------R----TLISWTSMITGFANHSLSHQALQLFEDMLLAG--VRPN--QVT  491 (758)
Q Consensus       427 ~~Li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t  491 (758)
                      ..+...+...|++++|...+++...       +    ....+..+...+...|++++|...+++.....  ..+.  ...
T Consensus       535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  614 (903)
T PRK04841        535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC  614 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence            6677788899999999998876431       1    12234455566777899999999999876531  1222  234


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHcCC-C-CCH----HHH
Q 004369          492 FVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHY-----MCLIDMFVRLGCIEEAFDFIKKMDF-E-PNE----VIW  560 (758)
Q Consensus       492 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~  560 (758)
                      +..+.......|++++|...++.+............+     ......+...|+.++|...+..... . ...    ..+
T Consensus       615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~  694 (903)
T PRK04841        615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW  694 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence            4445556778999999999998875421111111111     1122445668999999999877621 1 111    124


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHhccC------CCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369          561 SVFIAGCRRHGNMELGFYAAEQLLKLK------PKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       561 ~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  621 (758)
                      ..+..++...|+.++|...++++++..      +....++..++.+|...|+.++|...+....+..
T Consensus       695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            566777888999999999999988752      1223467788999999999999999999887643

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.36  E-value=4.3e-05  Score=72.17  Aligned_cols=157  Identities=11%  Similarity=0.109  Sum_probs=116.7

Q ss_pred             hhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHH
Q 004369          430 VNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEAL  509 (758)
Q Consensus       430 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  509 (758)
                      +-.|.+.|+++......+.+..+.        ..|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~   93 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL   93 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            456777888777655443332211        01223566788888888877742 345678888888999999999999


Q ss_pred             HHHHHhhhhcCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 004369          510 GYFEMMQKEYKIKPVMDHYMCLIDMF-VRLGC--IEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLL  584 (758)
Q Consensus       510 ~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  584 (758)
                      ..|+...+.  .+.+...+..+..++ .+.|+  .++|.+++++. ...| +...+..+...+...|++++|...+++++
T Consensus        94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370         94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999988762  233577888888864 67787  59999999998 6677 67788999999999999999999999999


Q ss_pred             ccCCCCchhHHHH
Q 004369          585 KLKPKDCESYAML  597 (758)
Q Consensus       585 ~~~p~~~~~~~~l  597 (758)
                      ++.|.+..-+..+
T Consensus       172 ~l~~~~~~r~~~i  184 (198)
T PRK10370        172 DLNSPRVNRTQLV  184 (198)
T ss_pred             hhCCCCccHHHHH
Confidence            9998765544333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.32  E-value=6e-05  Score=84.43  Aligned_cols=132  Identities=14%  Similarity=0.015  Sum_probs=101.0

Q ss_pred             CCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHH
Q 004369          485 VRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWS  561 (758)
Q Consensus       485 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~  561 (758)
                      ...+...+..|.....+.|.+++|..+++...+   +.|+ ......++..+.+.+++++|+..+++. ...|+ .....
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~  158 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL  158 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence            344466777777777888888888888887754   4565 455666777888888888888888887 66674 45566


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      .+..++.+.|++++|..+|++++..+|+++.++..++.++...|+.++|...++...+
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6777777888888888888888887788888888888888888888888888887765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.30  E-value=5.9e-05  Score=74.25  Aligned_cols=182  Identities=11%  Similarity=0.030  Sum_probs=127.7

Q ss_pred             CCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC-C-hHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---Chh---HH
Q 004369          386 PDLYTFSSILTICSRLVALEQGEQIHALTLKTGFL-S-DVVVGTALVNMYKKCGRIERASRVFVEMSTR---TLI---SW  457 (758)
Q Consensus       386 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~-~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~~~---~~  457 (758)
                      .....+......+...|+++.|...+..+.+.... + ....+..+...|.+.|++++|...|+++.+.   +..   .+
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            35566777778889999999999999998875321 1 1246678889999999999999999998632   222   45


Q ss_pred             HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHH
Q 004369          458 TSMITGFANH--------SLSHQALQLFEDMLLAGVRPNQV-TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHY  528 (758)
Q Consensus       458 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~  528 (758)
                      ..+..++.+.        |+.++|++.|+++.+.  .|+.. ....+...    +....      .. .        ...
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~------~~-~--------~~~  169 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRN------RL-A--------GKE  169 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHH------HH-H--------HHH
Confidence            5555666654        7899999999999874  55532 22111111    00000      00 0        112


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCC
Q 004369          529 MCLIDMFVRLGCIEEAFDFIKKM----DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKP  588 (758)
Q Consensus       529 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  588 (758)
                      ..+.+.|.+.|++++|+..+++.    +-.| ....|..+..++...|++++|...++.+....|
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            35677889999999999999887    2233 356788999999999999999998888776555

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.30  E-value=1.6e-05  Score=84.56  Aligned_cols=189  Identities=11%  Similarity=0.098  Sum_probs=129.5

Q ss_pred             CCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004369          418 GFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALA  497 (758)
Q Consensus       418 ~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  497 (758)
                      +++|-...-..+.+.+.++|-...|..+|++..     .|.-.|..|+..|+..+|..+..+-.+  -+||+.-|..+.+
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD  465 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD  465 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence            456666777788888899999999999998764     677788888999988899888888777  4788888888888


Q ss_pred             HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhH
Q 004369          498 ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMEL  575 (758)
Q Consensus       498 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~  575 (758)
                      ......-+++|+++++....+        .-..+.....+.++++++.+.|+.- .+.| -..+|-.+..+..+.++++.
T Consensus       466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence            887777788888888765442        0111112222355666666666543 4444 44556666666666666666


Q ss_pred             HHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369          576 GFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       576 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  621 (758)
                      |.+.|...+.++|++...++.++-+|.+.|+-.+|...+++..+-+
T Consensus       538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            6666666666666666666666666666666666666666655433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.29  E-value=6.4e-05  Score=70.70  Aligned_cols=117  Identities=13%  Similarity=0.051  Sum_probs=60.1

Q ss_pred             HHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC
Q 004369          495 ALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGN  572 (758)
Q Consensus       495 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~  572 (758)
                      .+....+.|++.+|...|.+...  .-++|.+.|+.+.-.|.+.|++++|..-|.+. .+.| +....+.|...+.-.|+
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd  183 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD  183 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence            44444455555555555555543  33444555555555555555555555555444 3333 33444555555555555


Q ss_pred             hhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369          573 MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV  613 (758)
Q Consensus       573 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  613 (758)
                      .+.|+.++.......+.|+.+-..|+-+....|++++|..+
T Consensus       184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence            55555555555555555555555555555555555555443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.28  E-value=0.0082  Score=62.34  Aligned_cols=147  Identities=17%  Similarity=0.137  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHhHhC-CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCC-hHHHHhHHhhhHHhcCCHHHHHHHH
Q 004369          369 GTEALSIFSKLNSS-GMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLS-DVVVGTALVNMYKKCGRIERASRVF  446 (758)
Q Consensus       369 ~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~Li~~y~~~g~~~~A~~~~  446 (758)
                      .+...+.+.++... .+.|+ .+|...++...+..-++.|+.+|..+.+.+..+ ++.++++++.-|| .++.+-|.++|
T Consensus       347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF  424 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF  424 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence            44444555554432 22332 345555666666666666677776666665555 5666666666665 35556666666


Q ss_pred             HhcCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369          447 VEMST--RT-LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYFEMMQK  517 (758)
Q Consensus       447 ~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  517 (758)
                      +--..  .| +.--+..+.-+...++-..|..+|++....++.||  ...|..+|.-=+.-|++..+.++-+++..
T Consensus       425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            54331  12 22223344444555555555556665555544444  23455555555555555555555544443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=5.9e-05  Score=71.56  Aligned_cols=301  Identities=15%  Similarity=0.097  Sum_probs=164.3

Q ss_pred             HHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCeeechhH-HHHHhhh
Q 004369          279 LTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH--VNLVTWNAM-IAGHAQM  355 (758)
Q Consensus       279 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~l-i~~~~~~  355 (758)
                      +++++..+.+..++..+.+++..-.+.. +.+....+.|...|....++..|-..++++..  |...-|... ...+.+ 
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-   90 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-   90 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-
Confidence            4444444444555555555554444332 22444456666677777777777777776644  221111110 112222 


Q ss_pred             chhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHH--hcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhH
Q 004369          356 MDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTIC--SRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMY  433 (758)
Q Consensus       356 ~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y  433 (758)
                                .+.+..|+.+...|...   |+...-..-+.+.  -+.+++..++.+.+.....   .+..+.+...-..
T Consensus        91 ----------A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCll  154 (459)
T KOG4340|consen   91 ----------ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLL  154 (459)
T ss_pred             ----------hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchhee
Confidence                      66667777777666542   2221111111111  2334444454444443321   1333344444445


Q ss_pred             HhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHH
Q 004369          434 KKCGRIERASRVFVEMSTR----TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEAL  509 (758)
Q Consensus       434 ~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  509 (758)
                      .+.|+.+.|.+-|+...+-    ....||.-+. ..+.|+++.|+++..++.++|++-....         ..|...++.
T Consensus       155 ykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPEl---------gIGm~tegi  224 (459)
T KOG4340|consen  155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPEL---------GIGMTTEGI  224 (459)
T ss_pred             eccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCcc---------CccceeccC
Confidence            5677777777777765532    3355654443 3445677777777777777765422110         001111111


Q ss_pred             H---------HHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCChhHH
Q 004369          510 G---------YFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMD----FEPNEVIWSVFIAGCRRHGNMELG  576 (758)
Q Consensus       510 ~---------~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a  576 (758)
                      .         +.....        ++.+|.-...+.+.|+++.|.+.+..||    .+.|++|...+.-. -..++...+
T Consensus       225 DvrsvgNt~~lh~Sal--------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g  295 (459)
T KOG4340|consen  225 DVRSVGNTLVLHQSAL--------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEG  295 (459)
T ss_pred             chhcccchHHHHHHHH--------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcccc
Confidence            0         111000        1223333345678899999999999993    33477776655432 234667777


Q ss_pred             HHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHH
Q 004369          577 FYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNL  616 (758)
Q Consensus       577 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  616 (758)
                      .+-+.-+++++|-.++++..+.-+|++..-++-|..+.-+
T Consensus       296 ~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  296 FEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            8888888999998889999999999999999888877654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.27  E-value=0.00033  Score=71.74  Aligned_cols=119  Identities=15%  Similarity=0.156  Sum_probs=91.3

Q ss_pred             HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhH
Q 004369          498 ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMEL  575 (758)
Q Consensus       498 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~  575 (758)
                      .....|.+++|+..+..+.+  ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-++..++.+.|+..+
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence            34567788888888888765  33344566667778888888888888888887 66675 5667778888888888888


Q ss_pred             HHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369          576 GFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       576 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                      |...++.....+|+|+..|..|+.+|...|+..++...+.++-
T Consensus       393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~  435 (484)
T COG4783         393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY  435 (484)
T ss_pred             HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            8888888888888888888888888888887777776665543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.25  E-value=2.2e-05  Score=83.63  Aligned_cols=184  Identities=12%  Similarity=0.114  Sum_probs=91.6

Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCC
Q 004369          307 YASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP  386 (758)
Q Consensus       307 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p  386 (758)
                      ++|-......+...+.++|-...|..+|+++     ..|.-.|-+|..           .|+..+|..+..+-.+  -+|
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~-----------lg~~~kaeei~~q~le--k~~  455 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLL-----------LGQHGKAEEINRQELE--KDP  455 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHH-----------hcccchHHHHHHHHhc--CCC
Confidence            4555566666777777788888888877765     346667777777           7777777776666555  255


Q ss_pred             CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHH
Q 004369          387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR---TLISWTSMITG  463 (758)
Q Consensus       387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~  463 (758)
                      |..-|..+.....+..-+++|.++.++....       .-..+.......++++++.+.|+.-.+-   -..+|-....+
T Consensus       456 d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~  528 (777)
T KOG1128|consen  456 DPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCA  528 (777)
T ss_pred             cchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHH
Confidence            5555555555444444444444444332211       1111111112234444444444432211   22344444444


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369          464 FANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQK  517 (758)
Q Consensus       464 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  517 (758)
                      ..+.++++.|.+.|..-..  ..|| ...|+.+-.+|.+.++-.+|...+.+..+
T Consensus       529 ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK  581 (777)
T KOG1128|consen  529 ALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK  581 (777)
T ss_pred             HHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence            4444444444444444333  2333 22344444444444444444444444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.21  E-value=3.5e-05  Score=68.33  Aligned_cols=96  Identities=20%  Similarity=0.297  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369          525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV  602 (758)
Q Consensus       525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  602 (758)
                      ......+...+...|++++|.+.+++. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   96 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            455667777888888888888888887 4455 56778888888888888889998888888888888888888999999


Q ss_pred             hCCCchhHHHHHHHhhhC
Q 004369          603 SAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       603 ~~g~~~~a~~~~~~m~~~  620 (758)
                      ..|++++|.+.++...+.
T Consensus        97 ~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        97 ALGEPESALKALDLAIEI  114 (135)
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            999999998888877763

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.20  E-value=0.00035  Score=79.69  Aligned_cols=233  Identities=17%  Similarity=0.198  Sum_probs=179.5

Q ss_pred             CCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHc-CCC---ChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC-C-hhHH
Q 004369          385 KPD-LYTFSSILTICSRLVALEQGEQIHALTLKT-GFL---SDVVVGTALVNMYKKCGRIERASRVFVEMSTR-T-LISW  457 (758)
Q Consensus       385 ~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~---~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~-~-~~~~  457 (758)
                      .|| ...|-..|.-..+.++.+.|+++.+++++. ++.   --.-+|.+++++-..-|.-+...++|++..+- | ...|
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence            354 456777788888999999999999988764 111   12457888888888888889999999998754 3 3578


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 004369          458 TSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR  537 (758)
Q Consensus       458 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~  537 (758)
                      ..|...|.+.+..++|.+++++|.+. +.-....|...+..+.+...-+.|..++.++.+...-.-.+......+++-.+
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            99999999999999999999999986 55567789999999999999999999999987632222235556677888889


Q ss_pred             cCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccC--CCCchhHHH-HHHHhhhCCCchhHHH
Q 004369          538 LGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK--PKDCESYAM-LLDIFVSAGRWEDVAV  612 (758)
Q Consensus       538 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~-l~~~~~~~g~~~~a~~  612 (758)
                      .|+.+.+..+|+.. .-.| ....|+.++..-.+||+.+-+..+|++++.+.  |...-.+.- ....=.+.|+-+.+..
T Consensus      1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence            99999999999987 3334 57789999999999999999999999999876  444444333 3333344466666655


Q ss_pred             HHHHhh
Q 004369          613 VKNLTR  618 (758)
Q Consensus       613 ~~~~m~  618 (758)
                      +..++.
T Consensus      1693 VKarA~ 1698 (1710)
T KOG1070|consen 1693 VKARAK 1698 (1710)
T ss_pred             HHHHHH
Confidence            554443

>PLN02789 farnesyltranstransferase

Probab=98.19  E-value=0.00024  Score=72.21  Aligned_cols=188  Identities=12%  Similarity=0.112  Sum_probs=136.6

Q ss_pred             HHhhhHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 004369          428 ALVNMYKKCGRIERASRVFVEMSTR---TLISWTSMITGFANHS-LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAG  503 (758)
Q Consensus       428 ~Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g  503 (758)
                      .+-..+.+.++.++|+...+++...   +..+|+.....+...| ++++++..++++.+...+ +..+|..-...+.+.|
T Consensus        42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~  120 (320)
T PLN02789         42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLG  120 (320)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcC
Confidence            3334455667888999998887643   4457777666777777 579999999999985322 3445655544455566


Q ss_pred             c--HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc---CCh---
Q 004369          504 M--VYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH---GNM---  573 (758)
Q Consensus       504 ~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~---  573 (758)
                      .  .+++..+++.+.+  .-+-+...|+....++.+.|++++|++.++++ ...| |...|+.....+.+.   |..   
T Consensus       121 ~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~  198 (320)
T PLN02789        121 PDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM  198 (320)
T ss_pred             chhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence            5  3677888888875  22345778888889999999999999999998 5555 678898888777655   222   


Q ss_pred             -hHHHHHHHHHhccCCCCchhHHHHHHHhhhC----CCchhHHHHHHHhh
Q 004369          574 -ELGFYAAEQLLKLKPKDCESYAMLLDIFVSA----GRWEDVAVVKNLTR  618 (758)
Q Consensus       574 -~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~  618 (758)
                       +.+.....++++.+|+|..+|..+..+|...    ++..+|.++.....
T Consensus       199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~  248 (320)
T PLN02789        199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL  248 (320)
T ss_pred             HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence             4677888899999999999999999999873    34455666655543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.18  E-value=5.5e-05  Score=71.15  Aligned_cols=134  Identities=16%  Similarity=0.095  Sum_probs=111.3

Q ss_pred             CCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--CCCCCHHHHHH
Q 004369          485 VRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--DFEPNEVIWSV  562 (758)
Q Consensus       485 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~  562 (758)
                      ..|+......+-.++...|+-+....+......  ....|......++....+.|++.+|...+++.  .-.||...|+.
T Consensus        62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~  139 (257)
T COG5010          62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL  139 (257)
T ss_pred             cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence            355433335555677778888888877777643  33445566677999999999999999999999  44458999999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      +.-+|-+.|++++|...+.+++++.|.++..+..|+-.|.-.|+.+.|..++......
T Consensus       140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999887753

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.13  E-value=8.3e-05  Score=77.35  Aligned_cols=215  Identities=14%  Similarity=0.092  Sum_probs=146.9

Q ss_pred             cccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCe---eechhHHHHHhhhchhhhchh
Q 004369          287 GTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNL---VTWNAMIAGHAQMMDLAKDDL  363 (758)
Q Consensus       287 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~~~~~~~~l  363 (758)
                      .+.|++..|.-.|+..++.. +.+...|--|...-...++-..|+..+.+..+-|+   ...-+|.-.|..         
T Consensus       296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN---------  365 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTN---------  365 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh---------
Confidence            34566777777777776665 55667777777777777777777777776655333   344444556666         


Q ss_pred             hcCCChhHHHHHHHHhHhCCCC--------CCHHHHHHHHHHHhcccchHHHHHHHHH-HHHcCCCChHHHHhHHhhhHH
Q 004369          364 SAHNGGTEALSIFSKLNSSGMK--------PDLYTFSSILTICSRLVALEQGEQIHAL-TLKTGFLSDVVVGTALVNMYK  434 (758)
Q Consensus       364 ~~~g~~~~A~~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~i~~~-~~~~~~~~~~~~~~~Li~~y~  434 (758)
                        .|.-.+|+..|+.-+....+        ++..+-..  ........+....++|-. ....+...|..++..|.-.|-
T Consensus       366 --eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~  441 (579)
T KOG1125|consen  366 --EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN  441 (579)
T ss_pred             --hhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence              77777888887776543210        00000000  111222233444455544 444555578888999999999


Q ss_pred             hcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccccHHHHHH
Q 004369          435 KCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV-TFVGALAACSNAGMVYEALG  510 (758)
Q Consensus       435 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~  510 (758)
                      -.|++++|.+.|+...   ..|...||.|...++...+.++|+..|++.++  ++|+-+ ....|.-+|...|.+++|.+
T Consensus       442 ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~  519 (579)
T KOG1125|consen  442 LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVK  519 (579)
T ss_pred             cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence            9999999999999876   34778999999999999999999999999998  789843 33444448999999999998


Q ss_pred             HHHHhhh
Q 004369          511 YFEMMQK  517 (758)
Q Consensus       511 ~~~~~~~  517 (758)
                      +|-.+..
T Consensus       520 hlL~AL~  526 (579)
T KOG1125|consen  520 HLLEALS  526 (579)
T ss_pred             HHHHHHH
Confidence            8876543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.12  E-value=0.0025  Score=62.10  Aligned_cols=214  Identities=14%  Similarity=0.140  Sum_probs=162.1

Q ss_pred             HHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHH
Q 004369          423 VVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMI---TGFANHSLSHQALQLFEDMLLAGVRPNQVT-FVGALAA  498 (758)
Q Consensus       423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a  498 (758)
                      +.-.--|...+...|++.+|+.-|....+-|+..|.++.   ..|...|+..-|+.=+.+.++  ++||-.. -..-...
T Consensus        38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchh
Confidence            333334566667789999999999998888888877764   478888999999999999888  6888442 2222335


Q ss_pred             HhccccHHHHHHHHHHhhhhcCCCCC----HHHHH------------HHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHH
Q 004369          499 CSNAGMVYEALGYFEMMQKEYKIKPV----MDHYM------------CLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIW  560 (758)
Q Consensus       499 ~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~  560 (758)
                      +.++|.+++|..-|+.+...   .|+    .+++.            ..+..+.-.|+...|++++..+ .+.| |...+
T Consensus       116 llK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~  192 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR  192 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence            67899999999999988752   231    22222            2234455678999999999888 7777 77777


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEE
Q 004369          561 SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSF  640 (758)
Q Consensus       561 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f  640 (758)
                      ..-..+|...|+...|+.-++.+-++..++...+.-++..+...|+.+++...+++..+.+                   
T Consensus       193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld-------------------  253 (504)
T KOG0624|consen  193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD-------------------  253 (504)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC-------------------
Confidence            7778888999999999999999999999999999999999999999999988877766532                   


Q ss_pred             ecCCCCCCChHHHHHHHHHHHHHH
Q 004369          641 KPNDGLHPQSAEIFKVLDELVEKA  664 (758)
Q Consensus       641 ~~~~~~~~~~~~i~~~l~~l~~~m  664 (758)
                          ..|..+---|.+|.++.+.+
T Consensus       254 ----pdHK~Cf~~YKklkKv~K~l  273 (504)
T KOG0624|consen  254 ----PDHKLCFPFYKKLKKVVKSL  273 (504)
T ss_pred             ----cchhhHHHHHHHHHHHHHHH
Confidence                25555555666666655544

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.11  E-value=4.7e-06  Score=53.75  Aligned_cols=35  Identities=29%  Similarity=0.621  Sum_probs=32.8

Q ss_pred             chHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCCh
Q 004369          242 MSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNE  276 (758)
Q Consensus       242 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  276 (758)
                      ++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999984

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.10  E-value=5.4e-06  Score=53.46  Aligned_cols=35  Identities=29%  Similarity=0.688  Sum_probs=32.1

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004369          455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ  489 (758)
Q Consensus       455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  489 (758)
                      ++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999973

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.07  E-value=6e-05  Score=78.01  Aligned_cols=122  Identities=16%  Similarity=0.229  Sum_probs=100.7

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHH
Q 004369          492 FVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRR  569 (758)
Q Consensus       492 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~  569 (758)
                      ..+++..+...+++++|.++|+++.+.   .|+  ....|+..+...++-.+|.+++++. ...| |...+..-...|..
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            455666677788899999999988763   355  3445788888888888999988887 4445 66667767777889


Q ss_pred             cCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369          570 HGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       570 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                      .++++.|+.+++++.++.|++..+|..|+.+|.+.|++++|.-.++.+.
T Consensus       247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999999999999998876

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.07  E-value=0.00061  Score=76.49  Aligned_cols=133  Identities=11%  Similarity=0.056  Sum_probs=90.1

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q 004369          453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ-VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCL  531 (758)
Q Consensus       453 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l  531 (758)
                      ++..+-.|.....+.|++++|+.+++...+  +.||. .....+..++.+.+++++|....++...  .-+-+......+
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~  160 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE  160 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence            455666666777777777777777777776  56663 3555566677777777777777777754  222235566667


Q ss_pred             HHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          532 IDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       532 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      ..++.+.|++++|.++|++. ...| +..+|.++..++.+.|+.++|..+|+++++...+
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence            77777777777777777777 3334 3566777777777777777777777777776543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.07  E-value=0.035  Score=61.46  Aligned_cols=170  Identities=10%  Similarity=0.099  Sum_probs=96.5

Q ss_pred             HHHHHHHHhcccchHHHH---HHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChh--HHHH-HHHHH
Q 004369          391 FSSILTICSRLVALEQGE---QIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLI--SWTS-MITGF  464 (758)
Q Consensus       391 ~~~ll~a~~~~~~~~~a~---~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~-li~~~  464 (758)
                      .+.++..|.+.++.....   -+++..... -+.|..+--.||..|+-.|-+..|.++|+.+.-+++.  |..- +..-+
T Consensus       439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~  517 (932)
T KOG2053|consen  439 VNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRA  517 (932)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHH
Confidence            345667788877766333   333333332 2445666668899999999999999999998755442  2222 23445


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHH---HHHhhhhcCCCCCHHHHHHHHHHHHHcCC
Q 004369          465 ANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGY---FEMMQKEYKIKPVMDHYMCLIDMFVRLGC  540 (758)
Q Consensus       465 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~---~~~~~~~~~~~p~~~~~~~li~~~~~~g~  540 (758)
                      ...|++..+...+++..+- ...+ ..+-..+..|| +.|.+.+..++   -+++... .-.....+-+..++.+...++
T Consensus       518 ~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~~  594 (932)
T KOG2053|consen  518 ETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNADR  594 (932)
T ss_pred             HhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCc
Confidence            5567777777776665441 1111 11212222233 33444444333   2333221 111123344667888899999


Q ss_pred             HHHHHHHHHHcCCCC--CHHHHHHHH
Q 004369          541 IEEAFDFIKKMDFEP--NEVIWSVFI  564 (758)
Q Consensus       541 ~~~A~~~~~~m~~~p--~~~~~~~ll  564 (758)
                      .++-...+..|...|  |..-|..|.
T Consensus       595 ~~q~~~~~~~~~l~~~e~~I~w~~L~  620 (932)
T KOG2053|consen  595 GTQLLKLLESMKLPPSEDRIQWVSLS  620 (932)
T ss_pred             HHHHHHHHhccccCcchhhccccccc
Confidence            999999988885444  444455443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.04  E-value=0.0012  Score=67.84  Aligned_cols=138  Identities=17%  Similarity=0.202  Sum_probs=110.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcC
Q 004369          462 TGFANHSLSHQALQLFEDMLLAGVRPNQVTFVG-ALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLG  539 (758)
Q Consensus       462 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g  539 (758)
                      -.+...|++++|+..++.+...  .||...|.. ....+...++.++|.+.++.+..   ..|+ ....-.+.++|.+.|
T Consensus       314 ~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g  388 (484)
T COG4783         314 LQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGG  388 (484)
T ss_pred             HHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcC
Confidence            3455678899999999998874  666555544 45578899999999999999975   3465 556677889999999


Q ss_pred             CHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369          540 CIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLT  617 (758)
Q Consensus       540 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  617 (758)
                      +..+|...+++. .-.| |+..|..|..+|...|+..++...                 .+..|.-.|+|++|.......
T Consensus       389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A  451 (484)
T COG4783         389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRA  451 (484)
T ss_pred             ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHH
Confidence            999999999988 3344 788999999999999998876655                 455678899999999998888


Q ss_pred             hhCC
Q 004369          618 REEK  621 (758)
Q Consensus       618 ~~~~  621 (758)
                      +++.
T Consensus       452 ~~~~  455 (484)
T COG4783         452 SQQV  455 (484)
T ss_pred             HHhc
Confidence            7753

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=0.0015  Score=61.21  Aligned_cols=167  Identities=19%  Similarity=0.186  Sum_probs=118.2

Q ss_pred             HHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 004369          428 ALVNMYKKCGRIERASRVFVEMSTRTLISWTSM---ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGM  504 (758)
Q Consensus       428 ~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~  504 (758)
                      .++-+...+|+.+.|...++.+..+=+-++...   ..-+-..|++++|+++++...+.. +.|.+++.-=+...-..|+
T Consensus        57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK  135 (289)
T KOG3060|consen   57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK  135 (289)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence            334444456677777776666542211111111   112445788999999999998875 4456777666666666777


Q ss_pred             HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC---ChhHHHHH
Q 004369          505 VYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHG---NMELGFYA  579 (758)
Q Consensus       505 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~  579 (758)
                      --+|++-+....+  .+..|.+.|.-+.+.|...|++++|.-.++++ -..| +...+..+...+...|   +++.|.+.
T Consensus       136 ~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky  213 (289)
T KOG3060|consen  136 NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY  213 (289)
T ss_pred             cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            7788888887776  46678899999999999999999999999998 5556 5666677777666555   77889999


Q ss_pred             HHHHhccCCCCchhHHHH
Q 004369          580 AEQLLKLKPKDCESYAML  597 (758)
Q Consensus       580 ~~~~~~~~p~~~~~~~~l  597 (758)
                      +++++++.|.+...+..+
T Consensus       214 y~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  214 YERALKLNPKNLRALFGI  231 (289)
T ss_pred             HHHHHHhChHhHHHHHHH
Confidence            999999999665444433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.98  E-value=0.00064  Score=77.06  Aligned_cols=198  Identities=8%  Similarity=0.108  Sum_probs=138.5

Q ss_pred             CCC-CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCC------
Q 004369          384 MKP-DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRT------  453 (758)
Q Consensus       384 ~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~------  453 (758)
                      +.| +...+..++..+...++++++.++.....+.. +.....|-.+...|.+.++.+++..+  .+.   ..+      
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v  102 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV  102 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence            444 44566777888878888888888887655542 22333444444467777777766655  222   111      


Q ss_pred             -------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcC
Q 004369          454 -------------LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYK  520 (758)
Q Consensus       454 -------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~  520 (758)
                                   -..+-.+..+|.+.|+.++|..+|+++++.. .-|....+.+...++.. ++++|.+++..+...  
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--  178 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--  178 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--
Confidence                         1345567778888899999999999999965 33467788888888888 999999998888663  


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC---------------------HHHHHHHHHHHHHcCChhHHHH
Q 004369          521 IKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN---------------------EVIWSVFIAGCRRHGNMELGFY  578 (758)
Q Consensus       521 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---------------------~~~~~~ll~~~~~~g~~~~a~~  578 (758)
                                    |....++.++.++|.++ ...|+                     ..++--|-.-|...++++++..
T Consensus       179 --------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~  244 (906)
T PRK14720        179 --------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY  244 (906)
T ss_pred             --------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence                          44444556666666555 33332                     2233444466777889999999


Q ss_pred             HHHHHhccCCCCchhHHHHHHHhh
Q 004369          579 AAEQLLKLKPKDCESYAMLLDIFV  602 (758)
Q Consensus       579 ~~~~~~~~~p~~~~~~~~l~~~~~  602 (758)
                      +++.+++.+|.|..+..-|+..|.
T Consensus       245 iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        245 ILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHhcCCcchhhHHHHHHHHH
Confidence            999999999999999888988886

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.95  E-value=0.00024  Score=62.94  Aligned_cols=114  Identities=17%  Similarity=0.100  Sum_probs=87.2

Q ss_pred             HHHHHHHcCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CC
Q 004369          476 LFEDMLLAGVRPNQ-VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DF  553 (758)
Q Consensus       476 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~  553 (758)
                      .|++...  ..|+. .....+...+...|++++|.+.|+.+...  .+.+...+..+...|.+.|++++|.+.+++. ..
T Consensus         5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552         5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445544  45543 34555666778889999999999888662  2345677888889999999999999988887 45


Q ss_pred             CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh
Q 004369          554 EP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES  593 (758)
Q Consensus       554 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  593 (758)
                      .| +...|..+...+...|+++.|...+++++++.|++...
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence            55 56778888888999999999999999999999987553

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.95  E-value=1.4e-05  Score=51.07  Aligned_cols=34  Identities=26%  Similarity=0.724  Sum_probs=31.1

Q ss_pred             cchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCC
Q 004369          241 VMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQP  274 (758)
Q Consensus       241 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  274 (758)
                      +.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3689999999999999999999999999999887

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.92  E-value=1.9e-05  Score=50.45  Aligned_cols=33  Identities=30%  Similarity=0.551  Sum_probs=28.2

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004369          455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRP  487 (758)
Q Consensus       455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  487 (758)
                      .+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888877

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.87  E-value=0.00045  Score=71.67  Aligned_cols=127  Identities=12%  Similarity=0.109  Sum_probs=86.6

Q ss_pred             HHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 004369          425 VGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGM  504 (758)
Q Consensus       425 ~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~  504 (758)
                      ...+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++..+. .+-|...+..-...|.+.++
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~  249 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK  249 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence            33445555666777888888888877766666666777777777777888888777754 12234444444455677777


Q ss_pred             HHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHcCCCC
Q 004369          505 VYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKMDFEP  555 (758)
Q Consensus       505 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p  555 (758)
                      ++.|.++.+++.+   ..|+ ..+|..|+..|...|++++|+..++.+|..|
T Consensus       250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~  298 (395)
T PF09295_consen  250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT  298 (395)
T ss_pred             HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence            8888888777764   3344 5577778888888888888887777775544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.86  E-value=0.00018  Score=74.89  Aligned_cols=97  Identities=14%  Similarity=0.092  Sum_probs=48.8

Q ss_pred             HhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 004369          499 CSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELG  576 (758)
Q Consensus       499 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a  576 (758)
                      +...|++++|...|+++.+.  -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++|
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence            34445555555555555431  1122444455555555555555555555554 3344 344455555555555555555


Q ss_pred             HHHHHHHhccCCCCchhHHHH
Q 004369          577 FYAAEQLLKLKPKDCESYAML  597 (758)
Q Consensus       577 ~~~~~~~~~~~p~~~~~~~~l  597 (758)
                      ...++++++++|+++.....+
T Consensus        90 ~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         90 KAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHhCCCCHHHHHHH
Confidence            555555555555554444443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.84  E-value=0.056  Score=56.43  Aligned_cols=210  Identities=10%  Similarity=0.110  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcC---CHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCCHHHHHHHH
Q 004369          405 EQGEQIHALTLKTGFLSDVVVGTALVNMYKKCG---RIERASRVFVEMST----RTLISWTSMITGFANHSLSHQALQLF  477 (758)
Q Consensus       405 ~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~  477 (758)
                      +++..+++..+..-...+..+|.++.+---..-   +.+.....+++...    .-..+|-..+..-.+..-...|..+|
T Consensus       310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF  389 (656)
T KOG1914|consen  310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF  389 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence            444555555444333334555555443221111   23444444444431    22346777777777777789999999


Q ss_pred             HHHHHcCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc---CC
Q 004369          478 EDMLLAGVRP-NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM---DF  553 (758)
Q Consensus       478 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~  553 (758)
                      .+..+.+..+ +.....+++.-++ +++.+-|.++|+.=.+.+|-.|  .--.+.++-+...++-+.|..+|++.   .+
T Consensus       390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l  466 (656)
T KOG1914|consen  390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVL  466 (656)
T ss_pred             HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence            9999998888 5667777776554 5788999999998777666544  55567889999999999999999998   34


Q ss_pred             CCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC----chhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369          554 EPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD----CESYAMLLDIFVSAGRWEDVAVVKNLT  617 (758)
Q Consensus       554 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m  617 (758)
                      .||  ..+|..++.--..-|++..+.++-++....-|.+    ...-..+.+.|.=.+.+..-..-++.|
T Consensus       467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l  536 (656)
T KOG1914|consen  467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL  536 (656)
T ss_pred             ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence            554  4689999999999999999999988887766622    123456667777666665444433333

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.83  E-value=0.00061  Score=61.03  Aligned_cols=114  Identities=17%  Similarity=0.172  Sum_probs=67.0

Q ss_pred             cccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHHcCChhH
Q 004369          502 AGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNE----VIWSVFIAGCRRHGNMEL  575 (758)
Q Consensus       502 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~  575 (758)
                      .++...+...++.+.+.++-.| .....-.+...+...|++++|.+.|+.. ...||.    .....|...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            5666666666666665432221 1223333456666777777777777666 222332    234445666667777777


Q ss_pred             HHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHH
Q 004369          576 GFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNL  616 (758)
Q Consensus       576 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  616 (758)
                      |+..++.. .-.+-.+..+..++++|.+.|++++|...++.
T Consensus       104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            77776552 22333455667777777777777777777664

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.82  E-value=0.0038  Score=59.00  Aligned_cols=154  Identities=16%  Similarity=0.106  Sum_probs=75.5

Q ss_pred             hhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cccH
Q 004369          430 VNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN----AGMV  505 (758)
Q Consensus       430 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~  505 (758)
                      ...|++.|++++|.+.......-+....|  ...+.+..+.+-|.+.+++|.+-   -+..|.+-|..++.+    .+.+
T Consensus       115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~  189 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI  189 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence            34466667777777766653322222222  22334455566666666666542   134455544444432    2345


Q ss_pred             HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCh-hHHHHHHHH
Q 004369          506 YEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNM-ELGFYAAEQ  582 (758)
Q Consensus       506 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~  582 (758)
                      .+|.-+|++|.+  ...|+..+.+.+.-+....|++++|..++++. .-.+ ++.+...++-.-...|.. +.-.+...+
T Consensus       190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q  267 (299)
T KOG3081|consen  190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ  267 (299)
T ss_pred             hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            556666666644  34455555555555555556666666555555 2122 344444444333333332 333344445


Q ss_pred             HhccCCCC
Q 004369          583 LLKLKPKD  590 (758)
Q Consensus       583 ~~~~~p~~  590 (758)
                      +....|..
T Consensus       268 Lk~~~p~h  275 (299)
T KOG3081|consen  268 LKLSHPEH  275 (299)
T ss_pred             HHhcCCcc
Confidence            54444543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.80  E-value=0.00014  Score=69.83  Aligned_cols=111  Identities=17%  Similarity=0.176  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004369          472 QALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKK  550 (758)
Q Consensus       472 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~  550 (758)
                      +...+-++++..|            .-..+.+++.+|+..|..+++   +.| |..-|..-..+|.+.|.++.|++-.+.
T Consensus        76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence            4455555565554            235577888888888888875   344 466677778888888888888887777


Q ss_pred             c-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369          551 M-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML  597 (758)
Q Consensus       551 m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  597 (758)
                      . .+.|. ..+|..|..+|...|++++|++.|+++++++|++......|
T Consensus       141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL  189 (304)
T KOG0553|consen  141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL  189 (304)
T ss_pred             HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence            6 67774 56788888888888888888888888888888886544444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.78  E-value=0.0035  Score=58.78  Aligned_cols=160  Identities=13%  Similarity=0.142  Sum_probs=124.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 004369          457 WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGAL-AACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMF  535 (758)
Q Consensus       457 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  535 (758)
                      |..++-+....|+.+.|...++++... + |...-...+= .-+...|++++|.++++.+.++  -+.|..+|---+-+.
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil  130 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL  130 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence            444556667789999999999999886 3 5543222221 1245578999999999999874  345567777667777


Q ss_pred             HHcCCHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC---CchhH
Q 004369          536 VRLGCIEEAFDFIKKM--DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG---RWEDV  610 (758)
Q Consensus       536 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a  610 (758)
                      -..|+--+|++-+.+.  .+..|...|.-|...|...|+++.|.-.+++++=+.|.++-.+..|++.+...|   +.+-|
T Consensus       131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a  210 (289)
T KOG3060|consen  131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA  210 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence            7788888888877776  455699999999999999999999999999999999999999999999987776   45556


Q ss_pred             HHHHHHhhhC
Q 004369          611 AVVKNLTREE  620 (758)
Q Consensus       611 ~~~~~~m~~~  620 (758)
                      .+++....+-
T Consensus       211 rkyy~~alkl  220 (289)
T KOG3060|consen  211 RKYYERALKL  220 (289)
T ss_pred             HHHHHHHHHh
Confidence            7777766653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.75  E-value=3.6e-05  Score=61.50  Aligned_cols=78  Identities=19%  Similarity=0.333  Sum_probs=53.8

Q ss_pred             cCCHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369          538 LGCIEEAFDFIKKM-DFEP---NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV  613 (758)
Q Consensus       538 ~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  613 (758)
                      .|++++|+.+++++ ...|   +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46677777777776 2222   445566677777888888888888777 666676666677778888888888888877


Q ss_pred             HHH
Q 004369          614 KNL  616 (758)
Q Consensus       614 ~~~  616 (758)
                      ++.
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.73  E-value=0.0003  Score=57.32  Aligned_cols=92  Identities=22%  Similarity=0.388  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC
Q 004369          528 YMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG  605 (758)
Q Consensus       528 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  605 (758)
                      +..+...+...|++++|...+++. ...| +...|..+...+...|+++.|...+++.++..|.+...+..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            445666777788888888888876 4444 34667777777888888888888888888888888778888888888888


Q ss_pred             CchhHHHHHHHhhh
Q 004369          606 RWEDVAVVKNLTRE  619 (758)
Q Consensus       606 ~~~~a~~~~~~m~~  619 (758)
                      ++++|...++...+
T Consensus        83 ~~~~a~~~~~~~~~   96 (100)
T cd00189          83 KYEEALEAYEKALE   96 (100)
T ss_pred             hHHHHHHHHHHHHc
Confidence            88888888777654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.73  E-value=0.013  Score=66.82  Aligned_cols=237  Identities=12%  Similarity=0.101  Sum_probs=146.4

Q ss_pred             CcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004369          240 NVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMY  319 (758)
Q Consensus       240 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  319 (758)
                      +...|..|+..+...+++++|.++.+.-.+.  .|+...+                                  |-.+..
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~----------------------------------yy~~G~   73 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISA----------------------------------LYISGI   73 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceeh----------------------------------HHHHHH
Confidence            4556777777777777777777777755542  3443322                                  222222


Q ss_pred             HHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHh
Q 004369          320 LYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICS  399 (758)
Q Consensus       320 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~  399 (758)
                      .|.+.++.+++..+  .+           +.....           ..++.-...+...|...  .-+...+..+..+|.
T Consensus        74 l~~q~~~~~~~~lv--~~-----------l~~~~~-----------~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Yd  127 (906)
T PRK14720         74 LSLSRRPLNDSNLL--NL-----------IDSFSQ-----------NLKWAIVEHICDKILLY--GENKLALRTLAEAYA  127 (906)
T ss_pred             HHHhhcchhhhhhh--hh-----------hhhccc-----------ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHH
Confidence            45555555544443  11           111111           33443333333344432  234446777888888


Q ss_pred             cccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004369          400 RLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFED  479 (758)
Q Consensus       400 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  479 (758)
                      +.|+.+++..+++.+++.. +.|+.+.|.+...|+.. ++++|.+++.+.           +.-|...+++.++.++|.+
T Consensus       128 k~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k  194 (906)
T PRK14720        128 KLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSK  194 (906)
T ss_pred             HcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHH
Confidence            9999999999999999887 66888999999999999 999999987664           3346777788899999998


Q ss_pred             HHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CH
Q 004369          480 MLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NE  557 (758)
Q Consensus       480 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~  557 (758)
                      +...  .|+.+.+               -.++.+.+....+..--+.++--+...|-...+++++.++++.. ...| |.
T Consensus       195 ~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~  257 (906)
T PRK14720        195 LVHY--NSDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNN  257 (906)
T ss_pred             HHhc--CcccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcch
Confidence            8874  4443322               22222223222222233345555666677777888888888877 5555 55


Q ss_pred             HHHHHHHHHHH
Q 004369          558 VIWSVFIAGCR  568 (758)
Q Consensus       558 ~~~~~ll~~~~  568 (758)
                      ....-|+..|.
T Consensus       258 ~a~~~l~~~y~  268 (906)
T PRK14720        258 KAREELIRFYK  268 (906)
T ss_pred             hhHHHHHHHHH
Confidence            55666666655

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.72  E-value=4.2e-05  Score=47.56  Aligned_cols=31  Identities=23%  Similarity=0.487  Sum_probs=27.0

Q ss_pred             chHHHHHHHHhhCCChhhHHHHHHHHHHCCC
Q 004369          242 MSWTTVIGACGENGEAVQGLRFFSKMLSEGI  272 (758)
Q Consensus       242 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  272 (758)
                      ++||+||++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4789999999999999999999999988764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.70  E-value=0.0019  Score=70.36  Aligned_cols=140  Identities=15%  Similarity=0.091  Sum_probs=81.8

Q ss_pred             CCChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------ccHHHHHHHHHHhh
Q 004369          451 TRTLISWTSMITGFANH-----SLSHQALQLFEDMLLAGVRPNQ-VTFVGALAACSNA--------GMVYEALGYFEMMQ  516 (758)
Q Consensus       451 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~  516 (758)
                      ..|...|...+.|....     +...+|+.+|++..+  ..||. ..+..+..++...        +++..+.+......
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            45667777777664432     226688888888888  56773 3344332222111        12233333333322


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369          517 KEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE  592 (758)
Q Consensus       517 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  592 (758)
                      .......+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...++++++++|.++.
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            21112233455666655555667777777777776 56666666777777777777777777777777777777654

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.68  E-value=5e-05  Score=47.21  Aligned_cols=31  Identities=26%  Similarity=0.648  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004369          455 ISWTSMITGFANHSLSHQALQLFEDMLLAGV  485 (758)
Q Consensus       455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  485 (758)
                      ++||+||++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4788888888888888888888888888764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.67  E-value=0.00084  Score=57.73  Aligned_cols=101  Identities=16%  Similarity=0.115  Sum_probs=55.3

Q ss_pred             HHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHHH
Q 004369          493 VGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN----EVIWSVFIAG  566 (758)
Q Consensus       493 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~  566 (758)
                      ..+...+...|++++|.+.|..+.+...-.| ....+..+..++.+.|++++|.+.++++ ...|+    ..++..+...
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence            3344445555666666666666554321111 1234444566666666666666666655 22222    3345566666


Q ss_pred             HHHcCChhHHHHHHHHHhccCCCCchh
Q 004369          567 CRRHGNMELGFYAAEQLLKLKPKDCES  593 (758)
Q Consensus       567 ~~~~g~~~~a~~~~~~~~~~~p~~~~~  593 (758)
                      +...|+.+.|...++++++..|+++..
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            666667777777777776666665443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15331 chaperone protein SicA; Provisional

Probab=97.65  E-value=0.001  Score=58.77  Aligned_cols=90  Identities=13%  Similarity=0.057  Sum_probs=79.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCc
Q 004369          530 CLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRW  607 (758)
Q Consensus       530 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  607 (758)
                      ....-+...|++++|..+|+-. -..| |..-|..|...|...++++.|...+..+..++++||..+...+.+|...|+.
T Consensus        42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence            3445566899999999999987 3344 5667888999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhh
Q 004369          608 EDVAVVKNLTRE  619 (758)
Q Consensus       608 ~~a~~~~~~m~~  619 (758)
                      ++|+..++...+
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998865

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.64  E-value=0.00061  Score=58.61  Aligned_cols=96  Identities=13%  Similarity=0.042  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC---chhHHHH
Q 004369          526 DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD---CESYAML  597 (758)
Q Consensus       526 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l  597 (758)
                      ..+-.++..+.+.|++++|.+.++++ ...|+    ...+..+...+...|+++.|...+++++...|++   +..+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            45667888899999999999999988 33443    3467778999999999999999999999998875   5678899


Q ss_pred             HHHhhhCCCchhHHHHHHHhhhCC
Q 004369          598 LDIFVSAGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       598 ~~~~~~~g~~~~a~~~~~~m~~~~  621 (758)
                      +.+|.+.|++++|.+.++.+.+..
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHC
Confidence            999999999999999999988743

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.63  E-value=0.0015  Score=60.49  Aligned_cols=129  Identities=14%  Similarity=0.110  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 004369          455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLI  532 (758)
Q Consensus       455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li  532 (758)
                      ..+..+...+...|++++|+..|++..+....++  ...+..+...+.+.|++++|...+++..+.  .+-+...+..+.
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg  113 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence            4556666666667777777777777665432222  245555566666667777777766666542  112244455555


Q ss_pred             HHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369          533 DMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGR  606 (758)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  606 (758)
                      .+|...|+...+..-++..                  ...+++|.+.++++++.+|++   |..+...+...|+
T Consensus       114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            5665555554444322211                  012577888888888888876   5555555555554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.63  E-value=0.00012  Score=55.84  Aligned_cols=64  Identities=19%  Similarity=0.236  Sum_probs=57.7

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC-CchhHHHHHHHhhh
Q 004369          556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG-RWEDVAVVKNLTRE  619 (758)
Q Consensus       556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~  619 (758)
                      ++.+|..+...+...|++++|+..++++++++|+++..+..++.+|...| ++++|.+.++...+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999 79999999888765

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.60  E-value=0.0039  Score=55.78  Aligned_cols=125  Identities=12%  Similarity=0.065  Sum_probs=73.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH--HHHHHHH
Q 004369          457 WTSMITGFANHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM--DHYMCLI  532 (758)
Q Consensus       457 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li  532 (758)
                      |..++..+ ..++...+...++++.+....-.  ......+...+...|++++|...|+.+... .-.|+.  ...-.|.
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence            33344444 36667777777777766421111  122333445566677777777777777663 222221  2333456


Q ss_pred             HHHHHcCCHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369          533 DMFVRLGCIEEAFDFIKKMDFE-PNEVIWSVFIAGCRRHGNMELGFYAAEQL  583 (758)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  583 (758)
                      ..+...|++++|+..++...-. .....+..+...+...|+.++|...|+++
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            6777777777777777665222 24455666777777777777777777765

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.01  Score=56.22  Aligned_cols=148  Identities=15%  Similarity=0.067  Sum_probs=106.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH----H
Q 004369          461 ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMF----V  536 (758)
Q Consensus       461 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~  536 (758)
                      ...|...|++++|++..+...    ..+....+  ...+.+..+++-|.+.++.|.+   + .+-.+.+.|..++    .
T Consensus       115 a~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~  184 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLAT  184 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhc
Confidence            345788899999998887621    11222222  2235577888999999998865   2 2334555454444    4


Q ss_pred             HcCCHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHH-HH
Q 004369          537 RLGCIEEAFDFIKKM--DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVA-VV  613 (758)
Q Consensus       537 ~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~  613 (758)
                      -.+.+.+|.-+|++|  ...|+..+.+-...+|...|++++|+.+++.++..+++++.+...++-.--..|+-.++. +.
T Consensus       185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN  264 (299)
T ss_pred             cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence            456789999999999  477888888888888999999999999999999999999988888887777788776554 33


Q ss_pred             HHHhh
Q 004369          614 KNLTR  618 (758)
Q Consensus       614 ~~~m~  618 (758)
                      ....+
T Consensus       265 l~QLk  269 (299)
T KOG3081|consen  265 LSQLK  269 (299)
T ss_pred             HHHHH
Confidence            44443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.59  E-value=0.1  Score=52.38  Aligned_cols=248  Identities=17%  Similarity=0.145  Sum_probs=168.8

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCH--HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDL--YTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERAS  443 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~  443 (758)
                      .|+++.|.+-|+.|...   |..  .-+..+.-...+.|+.+.+.+.-+.....- +.-.....++++..+..|+++.|+
T Consensus       133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al  208 (531)
T COG3898         133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL  208 (531)
T ss_pred             cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence            89999999999999762   222  223344444567888888888777665543 223556778899999999999999


Q ss_pred             HHHHhcC-----CCChh--HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccccHHHHHHHH
Q 004369          444 RVFVEMS-----TRTLI--SWTSMITGFAN---HSLSHQALQLFEDMLLAGVRPNQVT-FVGALAACSNAGMVYEALGYF  512 (758)
Q Consensus       444 ~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~  512 (758)
                      ++.+.-.     ++|+.  .--.|+.+-+.   .-+...|...-.+..+  +.||.+- -.....++.+.|++.++-.++
T Consensus       209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il  286 (531)
T COG3898         209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL  286 (531)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence            9998654     44542  22333333222   2345566665555554  6788543 344456889999999999999


Q ss_pred             HHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369          513 EMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM----DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK  587 (758)
Q Consensus       513 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  587 (758)
                      +.+-+   ..|....+...  .+.|.|+.  +..-+++.    .++| +..+...+..+-...|++..|..-.+.+....
T Consensus       287 E~aWK---~ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~  359 (531)
T COG3898         287 ETAWK---AEPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA  359 (531)
T ss_pred             HHHHh---cCCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence            99965   46766655433  33455543  33333332    5566 46667778888889999999999999999999


Q ss_pred             CCCchhHHHHHHHhhhC-CCchhHHHHHHHhhhCCCCCCCcee
Q 004369          588 PKDCESYAMLLDIFVSA-GRWEDVAVVKNLTREEKLSETDDWS  629 (758)
Q Consensus       588 p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~s  629 (758)
                      |.. ..|..|+++-... |+-.++...+-+....  ..+|.++
T Consensus       360 pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW~  399 (531)
T COG3898         360 PRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAWT  399 (531)
T ss_pred             chh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCccc
Confidence            985 7889999987655 8888888777665542  3445443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.55  E-value=0.0012  Score=68.93  Aligned_cols=103  Identities=16%  Similarity=0.178  Sum_probs=83.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHH
Q 004369          460 MITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVR  537 (758)
Q Consensus       460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~  537 (758)
                      ....+...|++++|+++|+++++.  .|+ ...|..+..++.+.|++++|...++.+.+   +.| +...|..+..+|..
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence            345667889999999999999985  454 66777888899999999999999999976   334 57788899999999


Q ss_pred             cCCHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 004369          538 LGCIEEAFDFIKKM-DFEPNEVIWSVFIAGC  567 (758)
Q Consensus       538 ~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~  567 (758)
                      .|++++|+..|++. .+.|+......++..|
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999998 6777655544444444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.54  E-value=0.00068  Score=65.27  Aligned_cols=96  Identities=22%  Similarity=0.299  Sum_probs=78.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcC
Q 004369          462 TGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLG  539 (758)
Q Consensus       462 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g  539 (758)
                      .-+.+.+++.+|+..|.+.++  +.|+ .+-|..-..+|++.|.++.|++-.+....   +.|. ...|..|..+|...|
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence            446778999999999999998  4554 66677778899999999999998887764   5565 678999999999999


Q ss_pred             CHHHHHHHHHHc-CCCCCHHHHHH
Q 004369          540 CIEEAFDFIKKM-DFEPNEVIWSV  562 (758)
Q Consensus       540 ~~~~A~~~~~~m-~~~p~~~~~~~  562 (758)
                      ++++|++.|++. .+.|+-.+|..
T Consensus       164 k~~~A~~aykKaLeldP~Ne~~K~  187 (304)
T KOG0553|consen  164 KYEEAIEAYKKALELDPDNESYKS  187 (304)
T ss_pred             cHHHHHHHHHhhhccCCCcHHHHH
Confidence            999999999988 88897665543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.53  E-value=0.00086  Score=61.90  Aligned_cols=94  Identities=14%  Similarity=-0.087  Sum_probs=77.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 004369          524 VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLL  598 (758)
Q Consensus       524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  598 (758)
                      ....|..++..+...|++++|+..|++. ...|+    ..+|..+...+...|++++|+..+++++++.|.....+..++
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            3566777788888899999999999887 33333    347889999999999999999999999999999888888888


Q ss_pred             HHhh-------hCCCchhHHHHHHHh
Q 004369          599 DIFV-------SAGRWEDVAVVKNLT  617 (758)
Q Consensus       599 ~~~~-------~~g~~~~a~~~~~~m  617 (758)
                      .+|.       ..|++++|...++..
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            8888       788888666665544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.49  E-value=0.0012  Score=61.08  Aligned_cols=82  Identities=17%  Similarity=0.084  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 004369          525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLD  599 (758)
Q Consensus       525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  599 (758)
                      ...+..+...|.+.|++++|...|++. ...|+    ...|..+...+...|+++.|...++++++..|+++..+..++.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            345666677777778888887777766 22222    3567788888888888888888888888888888888888888


Q ss_pred             HhhhCCC
Q 004369          600 IFVSAGR  606 (758)
Q Consensus       600 ~~~~~g~  606 (758)
                      +|...|+
T Consensus       115 ~~~~~g~  121 (172)
T PRK02603        115 IYHKRGE  121 (172)
T ss_pred             HHHHcCC
Confidence            8887776

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.47  E-value=0.0003  Score=52.92  Aligned_cols=57  Identities=23%  Similarity=0.339  Sum_probs=41.6

Q ss_pred             HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +...+...|++++|...++++++..|+++..+..++.++...|++++|..+++.+.+
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445566777777777777777777777777777777777777777777777777654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.47  E-value=0.00035  Score=52.51  Aligned_cols=61  Identities=20%  Similarity=0.295  Sum_probs=51.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369          531 LIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       531 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  591 (758)
                      +...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|++|
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            456788899999999999988 6667 567788999999999999999999999999999874

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.46  E-value=0.3  Score=54.44  Aligned_cols=217  Identities=12%  Similarity=0.106  Sum_probs=122.6

Q ss_pred             CCCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHh--hcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHH
Q 004369           50 NSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQEC--VNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEE  127 (758)
Q Consensus        50 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~  127 (758)
                      ...+.+..|+....++++..|  + ..|..++.++  .+.|..++|..+++.....+. .|..+...+...|...|+.++
T Consensus        20 ld~~qfkkal~~~~kllkk~P--n-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHP--N-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCC--C-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence            346677888888888776543  2 3466677764  477888888877777665553 377788888888888888999


Q ss_pred             HHHHHccCCCCCcc--hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccC----------ChHHHH
Q 004369          128 AQKVFDNLPRINVV--SWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLE----------SIRLGK  195 (758)
Q Consensus       128 A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------~~~~a~  195 (758)
                      |..+++...+.++.  -...+..+|++.+++.+-.+.--+|.+. +.-+.+.|=++++...+..          -+..|.
T Consensus        96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~  174 (932)
T KOG2053|consen   96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE  174 (932)
T ss_pred             HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence            98888887754333  3334445677776665433333333221 1223444434443332211          122344


Q ss_pred             HHHHHHHHhC-CCCChhHHHHHHHHHhhcCChHHHHHHHhc-cC----CCCcchHHHHHHHHhhCCChhhHHHHHHHHHH
Q 004369          196 QIHAYVVKYQ-TEDDTSVGNSLCSLYSTCGSLNSAIKAFNR-IR----EKNVMSWTTVIGACGENGEAVQGLRFFSKMLS  269 (758)
Q Consensus       196 ~~~~~~~~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  269 (758)
                      ...+.+++.+ ...+..-.-.-.......|++++|..++.. ..    .-+...-|--+.-+...++|.+..++-.++..
T Consensus       175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            4555554443 111111111222344456777777777722 11    12333334445556667777777777777766


Q ss_pred             CC
Q 004369          270 EG  271 (758)
Q Consensus       270 ~g  271 (758)
                      .|
T Consensus       255 k~  256 (932)
T KOG2053|consen  255 KG  256 (932)
T ss_pred             hC
Confidence            54

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.43  E-value=0.00037  Score=52.96  Aligned_cols=52  Identities=13%  Similarity=0.307  Sum_probs=40.1

Q ss_pred             HHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          568 RRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       568 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ...|++++|...++++++.+|+++..+..|+.+|.+.|++++|..+++.+..
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3567788888888888888888888888888888888888888887777665

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.41  E-value=0.0021  Score=52.15  Aligned_cols=88  Identities=27%  Similarity=0.337  Sum_probs=42.1

Q ss_pred             HhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 004369          499 CSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELG  576 (758)
Q Consensus       499 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a  576 (758)
                      +...|++++|..+++.+.+.  .+.+...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+.+.|
T Consensus        10 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a   87 (100)
T cd00189          10 YYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEA   87 (100)
T ss_pred             HHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHH
Confidence            33444444444444444331  1112233444445555555555555555544 2222 233455555555556666666


Q ss_pred             HHHHHHHhccCC
Q 004369          577 FYAAEQLLKLKP  588 (758)
Q Consensus       577 ~~~~~~~~~~~p  588 (758)
                      ...++++++..|
T Consensus        88 ~~~~~~~~~~~~   99 (100)
T cd00189          88 LEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHccCC
Confidence            666666555544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.002  Score=62.52  Aligned_cols=102  Identities=13%  Similarity=0.080  Sum_probs=88.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC---ChhHHHHHHHHHhccCCCCchhHHH
Q 004369          522 KPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHG---NMELGFYAAEQLLKLKPKDCESYAM  596 (758)
Q Consensus       522 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~  596 (758)
                      +-|.+.|--|...|.+.|+.+.|..-|.+. .+.| +...+..+..++....   ...++..+++++++++|.|..+...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            446899999999999999999999999998 5555 5677777777765543   4678999999999999999999999


Q ss_pred             HHHHhhhCCCchhHHHHHHHhhhCCCC
Q 004369          597 LLDIFVSAGRWEDVAVVKNLTREEKLS  623 (758)
Q Consensus       597 l~~~~~~~g~~~~a~~~~~~m~~~~~~  623 (758)
                      |+-.+...|++.+|...++.|.+....
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999986543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.36  E-value=0.0059  Score=61.33  Aligned_cols=143  Identities=17%  Similarity=0.217  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 004369          455 ISWTSMITGFANHSLSHQALQLFEDMLLAG-VRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLID  533 (758)
Q Consensus       455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~  533 (758)
                      .+|-.++...-+.+..+.|..+|.+.++.+ ...+.....+++. +...++.+.|.++|+...+.+  ..+...|...++
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence            367778888888888899999999988543 2222333333332 333567777999999998854  456677889999


Q ss_pred             HHHHcCCHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh
Q 004369          534 MFVRLGCIEEAFDFIKKM-DFEPNE----VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF  601 (758)
Q Consensus       534 ~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  601 (758)
                      .+.+.|+.+.|..+|++. ..-|..    .+|...+.-=.+.|+.+....+.+++.+.-|++. ....+.+-|
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry  150 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY  150 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence            999999999999999998 333433    4899999999999999999999999999888753 333344444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.34  E-value=0.031  Score=59.28  Aligned_cols=125  Identities=14%  Similarity=0.167  Sum_probs=68.1

Q ss_pred             HhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHH
Q 004369          429 LVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEA  508 (758)
Q Consensus       429 Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a  508 (758)
                      -..++...|+.++|..+.                  ..+|=.+-++++-+++-.    .+..+...+...+-+...+.-|
T Consensus       709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA  766 (1081)
T KOG1538|consen  709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA  766 (1081)
T ss_pred             HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence            344555667777766643                  233334444444444322    1233444444444455566667


Q ss_pred             HHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHH-HH----------HHHHHHHHcCChhHH
Q 004369          509 LGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVI-WS----------VFIAGCRRHGNMELG  576 (758)
Q Consensus       509 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~----------~ll~~~~~~g~~~~a  576 (758)
                      -++|..|-.          ..+++++....|+++||..+-++. .+.||... |.          ---.++.+.|+..+|
T Consensus       767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA  836 (1081)
T KOG1538|consen  767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREA  836 (1081)
T ss_pred             HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHH
Confidence            777776632          235677777778888888777777 34455432 11          122345556666677


Q ss_pred             HHHHHHHhc
Q 004369          577 FYAAEQLLK  585 (758)
Q Consensus       577 ~~~~~~~~~  585 (758)
                      .++++++-.
T Consensus       837 ~~vLeQLtn  845 (1081)
T KOG1538|consen  837 VQVLEQLTN  845 (1081)
T ss_pred             HHHHHHhhh
Confidence            776666643

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.0036  Score=62.76  Aligned_cols=160  Identities=11%  Similarity=0.070  Sum_probs=116.4

Q ss_pred             hHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccccHHHHHHHHHHhhhhcCCCCCHHHH---
Q 004369          455 ISWTSM-ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALA--ACSNAGMVYEALGYFEMMQKEYKIKPVMDHY---  528 (758)
Q Consensus       455 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~---  528 (758)
                      .+|-.+ ...+...|++++|...--..++.  .++. .+..+++  ++-..++.+.|...|++..   .+.|+-..-   
T Consensus       169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~  242 (486)
T KOG0550|consen  169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSA  242 (486)
T ss_pred             hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhH
Confidence            344433 23566789999998887777663  2221 1222222  3455778899999998875   345553221   


Q ss_pred             ----------HHHHHHHHHcCCHHHHHHHHHHc-CCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369          529 ----------MCLIDMFVRLGCIEEAFDFIKKM-DFEP-----NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE  592 (758)
Q Consensus       529 ----------~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  592 (758)
                                .-=.+...+.|++.+|.+.+.+. .+.|     +...|.....+..+.|+.++|+.-.+.+++++|.-..
T Consensus       243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik  322 (486)
T KOG0550|consen  243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK  322 (486)
T ss_pred             hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence                      12234567899999999999988 5555     4445666677788899999999999999999999888


Q ss_pred             hHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          593 SYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       593 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      .|..-++++...++|++|.+-++...+.
T Consensus       323 all~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  323 ALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999988764

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.23  E-value=0.00042  Score=52.63  Aligned_cols=61  Identities=23%  Similarity=0.315  Sum_probs=31.4

Q ss_pred             HcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369          537 RLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML  597 (758)
Q Consensus       537 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  597 (758)
                      ..|++++|++.|+++ ...| +..++..+...|.+.|++++|...++++...+|+++..+..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            345555555555555 3333 444455555555555555555555555555555554444333

...

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.20  E-value=0.33  Score=49.45  Aligned_cols=118  Identities=15%  Similarity=0.200  Sum_probs=83.5

Q ss_pred             hhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHH
Q 004369          430 VNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEAL  509 (758)
Q Consensus       430 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  509 (758)
                      +.-+...|+...|.++-.+..-+|-.-|-..+.+|+..++|++-..+...      +-.++-|..++.+|.+.|...+|.
T Consensus       184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~  257 (319)
T PF04840_consen  184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS  257 (319)
T ss_pred             HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence            44455678888888888888888888888899999999998877665432      123477888888888888888888


Q ss_pred             HHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004369          510 GYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGC  567 (758)
Q Consensus       510 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~  567 (758)
                      .+...+.           +.--+.+|.++|++.+|.+.--+.+   |...+..+...|
T Consensus       258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~  301 (319)
T PF04840_consen  258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC  301 (319)
T ss_pred             HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence            8876631           1345778888888888877655432   444444444333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.19  E-value=0.0011  Score=52.75  Aligned_cols=80  Identities=23%  Similarity=0.319  Sum_probs=44.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 004369          467 HSLSHQALQLFEDMLLAGVR-PNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEA  544 (758)
Q Consensus       467 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A  544 (758)
                      .|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++.. +   ..|+ ....-.+..+|.+.|++++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~---~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-K---LDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-T---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-C---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            46677777777777664321 23334444566667777777777777662 1   1222 23333446666677777777


Q ss_pred             HHHHHH
Q 004369          545 FDFIKK  550 (758)
Q Consensus       545 ~~~~~~  550 (758)
                      ++.+++
T Consensus        78 i~~l~~   83 (84)
T PF12895_consen   78 IKALEK   83 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            766654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.17  E-value=0.00076  Score=51.39  Aligned_cols=65  Identities=23%  Similarity=0.387  Sum_probs=54.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC-ChhHHHHHHHHHhccCC
Q 004369          524 VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHG-NMELGFYAAEQLLKLKP  588 (758)
Q Consensus       524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p  588 (758)
                      +...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3567788888888999999999998887 5566 5667888889999998 79999999999998887

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.10  E-value=0.0093  Score=54.94  Aligned_cols=63  Identities=13%  Similarity=0.098  Sum_probs=35.0

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369          455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYFEMMQK  517 (758)
Q Consensus       455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  517 (758)
                      ..|..+...+...|++++|+..|++.......|.  ..++..+...+.+.|++++|...++...+
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455555666666666666666666655322221  23455555555666666666666655543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.10  E-value=0.41  Score=51.66  Aligned_cols=144  Identities=17%  Similarity=0.190  Sum_probs=70.7

Q ss_pred             hhhHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 004369          430 VNMYKKCGRIERASRVFVEMSTRTL---ISWTSMITGF----ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNA  502 (758)
Q Consensus       430 i~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~  502 (758)
                      |.++.+.|+.-+|.+++.+|.++..   +.|..+=..|    .-..+..++++-.++....|...|...       +...
T Consensus       930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles 1002 (1189)
T KOG2041|consen  930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLES 1002 (1189)
T ss_pred             HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhh
Confidence            5567777877777777777763321   1111111111    111223344444444444554433322       2233


Q ss_pred             ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCChhHHHH
Q 004369          503 GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM----DFEPNEVIWSVFIAGCRRHGNMELGFY  578 (758)
Q Consensus       503 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~  578 (758)
                      |...++-.+.+..-.  |  ....||-.|..--...|.++.|+..--..    .+-|-..+|..|.-+-+....+...-+
T Consensus      1003 ~~l~~~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSK 1078 (1189)
T KOG2041|consen 1003 GLLAEQSRILENTWR--G--AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSK 1078 (1189)
T ss_pred             hhhhhHHHHHHhhhh--h--HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHH
Confidence            444444444443322  1  23456666666667788888887754433    455556666666554444444444444


Q ss_pred             HHHHHh
Q 004369          579 AAEQLL  584 (758)
Q Consensus       579 ~~~~~~  584 (758)
                      ++-++-
T Consensus      1079 AfmkLe 1084 (1189)
T KOG2041|consen 1079 AFMKLE 1084 (1189)
T ss_pred             HHHHHH
Confidence            444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.10  E-value=0.0013  Score=50.80  Aligned_cols=56  Identities=20%  Similarity=0.184  Sum_probs=45.7

Q ss_pred             HHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          565 AGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       565 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      ..+.+.++++.|.++++++++++|+++..+...+.+|.+.|++++|.+.++...+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45677888888888888888888888888888888888888888888888877753

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.04  E-value=0.042  Score=55.45  Aligned_cols=116  Identities=17%  Similarity=0.228  Sum_probs=72.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-ccHHHHHHHHHHhhhhcCCCCC----HHHHHHHHH
Q 004369          459 SMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNA-GMVYEALGYFEMMQKEYKIKPV----MDHYMCLID  533 (758)
Q Consensus       459 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~  533 (758)
                      ..+..|...|++..|-.++.++               ...|... |++++|.++|++..+-+.....    ...+..+..
T Consensus        99 ~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~  163 (282)
T PF14938_consen   99 KAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD  163 (282)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence            3455566666666665555544               3356666 8888888888887663322222    345667788


Q ss_pred             HHHHcCCHHHHHHHHHHcC---CC-----CCHH-HHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          534 MFVRLGCIEEAFDFIKKMD---FE-----PNEV-IWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       534 ~~~~~g~~~~A~~~~~~m~---~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      .+.+.|++++|.++|++..   ..     .+.. .+...+-.+...||...|...+++....+|.
T Consensus       164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred             HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            8999999999999998871   11     1111 1223333556678999999999999988874

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.01  E-value=0.00042  Score=43.81  Aligned_cols=32  Identities=22%  Similarity=0.632  Sum_probs=30.4

Q ss_pred             HHHHhccCCCCchhHHHHHHHhhhCCCchhHH
Q 004369          580 AEQLLKLKPKDCESYAMLLDIFVSAGRWEDVA  611 (758)
Q Consensus       580 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~  611 (758)
                      ++++++++|+++.+|..|+.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            68899999999999999999999999999986

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.99  E-value=0.0046  Score=61.77  Aligned_cols=258  Identities=13%  Similarity=0.085  Sum_probs=162.0

Q ss_pred             chhhcCCChhHHHHHHHHhHhCCCC---CCHHHHHHHHHHHhcccchHHHHHHHHHH--HHc--CC-CChHHHHhHHhhh
Q 004369          361 DDLSAHNGGTEALSIFSKLNSSGMK---PDLYTFSSILTICSRLVALEQGEQIHALT--LKT--GF-LSDVVVGTALVNM  432 (758)
Q Consensus       361 ~~l~~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~i~~~~--~~~--~~-~~~~~~~~~Li~~  432 (758)
                      .+||+.|+....+.+|+..++.|-.   .=+..|..+-.+|.-++++++|.++|..=  +..  |- .........|.+.
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            3466699999999999999987732   22345666777888889999999987532  111  11 0112223334445


Q ss_pred             HHhcCCHHHHHHHHHhcC-------CC--ChhHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH-
Q 004369          433 YKKCGRIERASRVFVEMS-------TR--TLISWTSMITGFANHSL--------------------SHQALQLFEDMLL-  482 (758)
Q Consensus       433 y~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~-  482 (758)
                      +--.|.+++|...-.+-.       .+  ....+-.+...|-..|+                    .+.|.+.|.+=++ 
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l  184 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL  184 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            555677777765432211       11  11233334455544332                    2334444433221 


Q ss_pred             ---cCCC-CCHHHHHHHHHHHhccccHHHHHHHHHHh---hhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc---
Q 004369          483 ---AGVR-PNQVTFVGALAACSNAGMVYEALGYFEMM---QKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM---  551 (758)
Q Consensus       483 ---~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---  551 (758)
                         .|-. .-...|..|...|.-.|++++|+..++.-   .+++|-... ...++.|.+++.-.|+++.|.+.++..   
T Consensus       185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence               1100 01234555555566678999999887642   234554432 456788999999999999999998865   


Q ss_pred             ----CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHhccC------CCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369          552 ----DFE-PNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK------PKDCESYAMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       552 ----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                          +-+ ...-+.-+|...|....+++.|+.++.+-+.+.      .....++..|+++|...|..+.|..+.+.-.
T Consensus       265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence                222 234567788999999899999998887766532      2345688999999999999999988766544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.96  E-value=0.12  Score=46.33  Aligned_cols=132  Identities=11%  Similarity=0.077  Sum_probs=100.9

Q ss_pred             CCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC---HHHH
Q 004369          485 VRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN---EVIW  560 (758)
Q Consensus       485 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~  560 (758)
                      ..|+...-..|..+....|+..+|...|++... --+.-|....-.+..+....+++.+|...+++. ...|+   +...
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            467777777788888999999999999998876 133456777778888888889999999888876 22222   2234


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369          561 SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       561 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                      ..+...+...|..+.|+..++.++.-.|+ +..-...+.++.++|+.+++..-...+.
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            46777888999999999999999998886 5667777888999999888775444443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.95  E-value=0.49  Score=47.70  Aligned_cols=243  Identities=14%  Similarity=0.107  Sum_probs=161.3

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHH--hcccchHHHHHHHHHHHHcCCCChHHHH--hHHhhhHHhcCCHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTIC--SRLVALEQGEQIHALTLKTGFLSDVVVG--TALVNMYKKCGRIER  441 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~~~~~~~~~~--~~Li~~y~~~g~~~~  441 (758)
                      .|+...|.++-.+-... +..|..-+..++.+-  .-.|+.+.+++-|+-|...   |.....  ..|.----+.|..+.
T Consensus        97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea  172 (531)
T COG3898          97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA  172 (531)
T ss_pred             cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence            67777777666554322 455666666666654  3468999999999999862   332222  122222346788888


Q ss_pred             HHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhc---cccHHHHHHHH
Q 004369          442 ASRVFVEMSTR---TLISWTSMITGFANHSLSHQALQLFEDMLLAG-VRPNQV--TFVGALAACSN---AGMVYEALGYF  512 (758)
Q Consensus       442 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~---~g~~~~a~~~~  512 (758)
                      |...-++.-..   -...|.+.+...+..|+++.|+++++.-+... +.+|..  .-..|+.+-..   ..+...|...-
T Consensus       173 Ar~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A  252 (531)
T COG3898         173 ARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA  252 (531)
T ss_pred             HHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            88887776532   33678899999999999999999998876643 556632  22334433211   22455555554


Q ss_pred             HHhhhhcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHH-HHHHHHHhccCCC
Q 004369          513 EMMQKEYKIKPVMDHY-MCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELG-FYAAEQLLKLKPK  589 (758)
Q Consensus       513 ~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~~p~  589 (758)
                      .+.   ..+.||..-- -.-..+|.+.|++.++-.+++.+ ...|.+.+|....  ..+.|+.-.. .+-.+++..+.|+
T Consensus       253 ~~a---~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk~n  327 (531)
T COG3898         253 LEA---NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDRLKRAKKLESLKPN  327 (531)
T ss_pred             HHH---hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcCcc
Confidence            444   3566764322 23357889999999999999999 7778777765443  4456664333 2345667788999


Q ss_pred             CchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369          590 DCESYAMLLDIFVSAGRWEDVAVVKNLT  617 (758)
Q Consensus       590 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m  617 (758)
                      +.+....++..-...|.+..|..--+..
T Consensus       328 naes~~~va~aAlda~e~~~ARa~Aeaa  355 (531)
T COG3898         328 NAESSLAVAEAALDAGEFSAARAKAEAA  355 (531)
T ss_pred             chHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            9999999999999999988776554444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.94  E-value=0.11  Score=55.28  Aligned_cols=199  Identities=15%  Similarity=0.111  Sum_probs=97.2

Q ss_pred             HHHHHHHhcccCChHHHHHH--HHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCC
Q 004369          178 LGTALTACSSLESIRLGKQI--HAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENG  255 (758)
Q Consensus       178 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g  255 (758)
                      ++..=++|.+.+++..-+-+  ++.+.+.|-.|+...   +...++-.|++.+|.++|.+                  +|
T Consensus       601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G  659 (1081)
T KOG1538|consen  601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG  659 (1081)
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence            44444455555554443333  344556666566544   33456667888888888754                  45


Q ss_pred             ChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHc
Q 004369          256 EAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFD  335 (758)
Q Consensus       256 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  335 (758)
                      .-..|+++|..|+--          -..+-+...|+.++-+.+...-...  ..+..--.+-..++...|+.++|..+.-
T Consensus       660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~  727 (1081)
T KOG1538|consen  660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICG  727 (1081)
T ss_pred             chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhh
Confidence            556666666665421          1112222233333333332221111  0111111233445555566666654431


Q ss_pred             cCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 004369          336 GMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTL  415 (758)
Q Consensus       336 ~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~  415 (758)
                      +                             +|-.+-++++-+++-.    .+..+...+..-+-+...+..|.+||..|-
T Consensus       728 d-----------------------------~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~g  774 (1081)
T KOG1538|consen  728 D-----------------------------HGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMG  774 (1081)
T ss_pred             c-----------------------------ccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence            1                             3333334443333321    223334344444445555666666666553


Q ss_pred             HcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC
Q 004369          416 KTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST  451 (758)
Q Consensus       416 ~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~  451 (758)
                      +.         .+++++....+++.+|..+-++.++
T Consensus       775 D~---------ksiVqlHve~~~W~eAFalAe~hPe  801 (1081)
T KOG1538|consen  775 DL---------KSLVQLHVETQRWDEAFALAEKHPE  801 (1081)
T ss_pred             cH---------HHHhhheeecccchHhHhhhhhCcc
Confidence            32         3466777777888888877777664

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.92  E-value=0.023  Score=50.74  Aligned_cols=106  Identities=13%  Similarity=0.199  Sum_probs=92.4

Q ss_pred             HhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC-
Q 004369          514 MMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM---DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK-  589 (758)
Q Consensus       514 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-  589 (758)
                      +..++..+.|++.+--.|...+.+.|+..||...|++.   .+.-|......+..+....++...|...++++.+.+|. 
T Consensus        78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~  157 (251)
T COG4700          78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF  157 (251)
T ss_pred             HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence            33444566799888889999999999999999999998   34558888899999999999999999999999999875 


Q ss_pred             -CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          590 -DCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       590 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                       .|.....++..|...|+..+|+..++...+
T Consensus       158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~  188 (251)
T COG4700         158 RSPDGHLLFARTLAAQGKYADAESAFEVAIS  188 (251)
T ss_pred             CCCCchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence             567788899999999999999999998875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.90  E-value=0.099  Score=51.18  Aligned_cols=173  Identities=11%  Similarity=0.076  Sum_probs=103.3

Q ss_pred             HhhhHHhcCCHHHHHHHHHhcCCCCh---hH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-
Q 004369          429 LVNMYKKCGRIERASRVFVEMSTRTL---IS---WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN-  501 (758)
Q Consensus       429 Li~~y~~~g~~~~A~~~~~~~~~~~~---~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-  501 (758)
                      ....+.+.|++++|.+.|+++....+   ..   .-.++.+|.+.+++++|+..|++..+.-..-...-+...+.+.+. 
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~  117 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM  117 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence            34445567888888888888763322   22   234566778888888999888888874222123333333333321 


Q ss_pred             -c------------------ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHH
Q 004369          502 -A------------------GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSV  562 (758)
Q Consensus       502 -~------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~  562 (758)
                       .                  ....+|...|+.+++.+   |+             ..-..+|...+..+...--..- -.
T Consensus       118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la~~e-~~  180 (243)
T PRK10866        118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLAKYE-LS  180 (243)
T ss_pred             hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHHHHH-HH
Confidence             1                  11233445555554433   32             2223344433333210000000 13


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhccCCCC---chhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369          563 FIAGCRRHGNMELGFYAAEQLLKLKPKD---CESYAMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                      +..-|.+.|.+.-|..-++.+++.-|+.   ..+...+.++|...|..++|.++.....
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            4555788899999999999999988764   4567788899999999999998877654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.86  E-value=0.14  Score=52.65  Aligned_cols=160  Identities=14%  Similarity=0.106  Sum_probs=102.7

Q ss_pred             HHhhhHHhcCCHHHHHHHHHhcCCC---Ch----hHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004369          428 ALVNMYKKCGRIERASRVFVEMSTR---TL----ISWTSMITGFAN---HSLSHQALQLFEDMLLAGVRPNQVTFVGALA  497 (758)
Q Consensus       428 ~Li~~y~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  497 (758)
                      .|+-.|....+++...++.+.+...   ++    ..--...-++.+   .|+.++|++++..+....-.++..||..+..
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3444577788888888888877643   11    122233445556   7889999999988766666777777777766


Q ss_pred             HHhc---------cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHH---HHc----C---CC
Q 004369          498 ACSN---------AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIE----EAFDFI---KKM----D---FE  554 (758)
Q Consensus       498 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m----~---~~  554 (758)
                      .|-.         ....++|...|.+.   +.+.|+..+--.++.++...|...    +..++-   ...    +   -.
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            5522         23477788777765   456676544334444444555322    222222   111    1   22


Q ss_pred             CCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369          555 PNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD  590 (758)
Q Consensus       555 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  590 (758)
                      .|-..+.+++.++.-.||.+.|.+++++++++.|+.
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            345556889999999999999999999999998764

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.86  E-value=0.037  Score=60.46  Aligned_cols=134  Identities=10%  Similarity=0.021  Sum_probs=98.5

Q ss_pred             CCCCCHHHHHHHHHHHhcc-----ccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHc--------CCHHHHHHHHH
Q 004369          484 GVRPNQVTFVGALAACSNA-----GMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRL--------GCIEEAFDFIK  549 (758)
Q Consensus       484 g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~  549 (758)
                      +.+.|...|...+.+....     +..+.|..+|+++.+   ..|+ ...|..+..+|...        ++++++.+..+
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            4566778888888875442     347799999999975   4676 44555544444322        23445555555


Q ss_pred             Hc---CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369          550 KM---DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       550 ~m---~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  621 (758)
                      +.   +..| +..++..+.-.....|++++|...++++++++|. ...|..++.+|...|+.++|...+++....+
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            53   2233 5567877777777789999999999999999994 7899999999999999999999999887644

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.86  E-value=0.012  Score=49.87  Aligned_cols=85  Identities=15%  Similarity=0.081  Sum_probs=50.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHc---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC---CchhHHHHHHHhhh
Q 004369          532 IDMFVRLGCIEEAFDFIKKM---DFEPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK---DCESYAMLLDIFVS  603 (758)
Q Consensus       532 i~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~  603 (758)
                      ..++-..|+.++|+.+|++.   +....  ...+-.+.+.++..|++++|..++++.++..|+   +......++-++..
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence            34455566666666666655   22221  224555666666677777777777766666565   44555556666667


Q ss_pred             CCCchhHHHHHHH
Q 004369          604 AGRWEDVAVVKNL  616 (758)
Q Consensus       604 ~g~~~~a~~~~~~  616 (758)
                      .|+.++|...+-.
T Consensus        88 ~gr~~eAl~~~l~  100 (120)
T PF12688_consen   88 LGRPKEALEWLLE  100 (120)
T ss_pred             CCCHHHHHHHHHH
Confidence            7777776665543

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.83  E-value=0.017  Score=60.52  Aligned_cols=82  Identities=17%  Similarity=0.196  Sum_probs=59.4

Q ss_pred             hHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 004369          243 SWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYL  322 (758)
Q Consensus       243 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  322 (758)
                      +..++|+.|.+.|..++++.++..=..-|+-||.+|++.+|..+.+.|++..|.++...|...+...+..++.--+..+.
T Consensus       105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~  184 (429)
T PF10037_consen  105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY  184 (429)
T ss_pred             cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence            44577777777777777777777777777778888888888888888888777777777777766666665555555555


Q ss_pred             hc
Q 004369          323 KC  324 (758)
Q Consensus       323 ~~  324 (758)
                      +.
T Consensus       185 ~~  186 (429)
T PF10037_consen  185 KY  186 (429)
T ss_pred             Hh
Confidence            55

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.82  E-value=0.0042  Score=47.84  Aligned_cols=65  Identities=20%  Similarity=0.392  Sum_probs=54.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369          532 IDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM  596 (758)
Q Consensus       532 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  596 (758)
                      -..|.+.+++++|+++++++ ...| +...|......+...|++++|...++++++..|+++.....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            35678899999999999988 6667 56678888889999999999999999999999987665443

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.82  E-value=0.015  Score=60.92  Aligned_cols=120  Identities=10%  Similarity=0.039  Sum_probs=75.3

Q ss_pred             CCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-C-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004369          418 GFLSDVVVGTALVNMYKKCGRIERASRVFVEMST-R-----TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVT  491 (758)
Q Consensus       418 ~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  491 (758)
                      +.+.+......+++......+++.+..++-+... +     -..+..++|..|.+.|..++++++++.=...|+-||..|
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            3344555555666666666667777776666542 1     123445777777777777777777777777777777777


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHc
Q 004369          492 FVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRL  538 (758)
Q Consensus       492 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~  538 (758)
                      |+.|+..+.+.|++..|.++...|..+ ....+..++.--+..+.+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence            777777777777777777777766553 4434444444444444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.82  E-value=0.042  Score=48.55  Aligned_cols=93  Identities=9%  Similarity=0.007  Sum_probs=68.5

Q ss_pred             hHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 004369          427 TALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAG  503 (758)
Q Consensus       427 ~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g  503 (758)
                      -++...+...|++++|.++|+-+.   ..+..-|-.|...+-..|++++|+..|....... +-|...+-.+..++...|
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence            344555667888888888888765   3355677788888888888888888888888753 233666777777888888


Q ss_pred             cHHHHHHHHHHhhhhcC
Q 004369          504 MVYEALGYFEMMQKEYK  520 (758)
Q Consensus       504 ~~~~a~~~~~~~~~~~~  520 (758)
                      +.+.|++.|+......+
T Consensus       118 ~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        118 NVCYAIKALKAVVRICG  134 (157)
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            88888888888776433

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.81  E-value=0.016  Score=58.17  Aligned_cols=129  Identities=12%  Similarity=0.131  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHc--CCCCCHHHHHHHHHH
Q 004369          490 VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR-LGCIEEAFDFIKKM--DFEPNEVIWSVFIAG  566 (758)
Q Consensus       490 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~  566 (758)
                      .+|..++..+-+.+.++.|+.+|..+.+....  +...|-....+-.+ .++.+.|.++|+..  .+..+...|...+.-
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            46888889999999999999999999863223  34556555666445 45666699999998  444478889999999


Q ss_pred             HHHcCChhHHHHHHHHHhccCCCCc---hhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          567 CRRHGNMELGFYAAEQLLKLKPKDC---ESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       567 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      +...++.+.|..++++.+..-|.+.   ..|...++.=.+.|+++.+.++.+.+.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999876644   57888888888999999999999888764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.80  E-value=0.024  Score=52.50  Aligned_cols=105  Identities=22%  Similarity=0.175  Sum_probs=73.4

Q ss_pred             CCCHHHHHHHHHHHh-----cccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHH
Q 004369          385 KPDLYTFSSILTICS-----RLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTS  459 (758)
Q Consensus       385 ~p~~~t~~~ll~a~~-----~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~  459 (758)
                      ..|..+|..++..+.     +.|.++-....+..|.+.|+..|..+|+.|++.+=| |.+- -..+|+.           
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~-----------  110 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA-----------  110 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH-----------
Confidence            557778888887775     347788888889999999999999999999998875 3322 1111111           


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 004369          460 MITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGM  504 (758)
Q Consensus       460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~  504 (758)
                      +..  -...+-+-|++++++|...|+.||..|+..++..+++.+.
T Consensus       111 ~F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  111 EFM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             Hhc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            111  1123456678888888888888888888888887766553

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.74  E-value=0.018  Score=53.33  Aligned_cols=97  Identities=13%  Similarity=0.174  Sum_probs=72.8

Q ss_pred             HHHHHhc--CCCChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-------------
Q 004369          443 SRVFVEM--STRTLISWTSMITGFANH-----SLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNA-------------  502 (758)
Q Consensus       443 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------------  502 (758)
                      ...|+..  ..+|-.+|..++..|.+.     |..+=....++.|.+-|+.-|..+|+.||+.+=+.             
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~  113 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM  113 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence            3445554  356667777777777643     66777777888888889999999999998887542             


Q ss_pred             ---ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCC
Q 004369          503 ---GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGC  540 (758)
Q Consensus       503 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  540 (758)
                         .+-+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus       114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence               234568888999976 6999999999999998887764

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.73  E-value=0.0053  Score=63.49  Aligned_cols=63  Identities=13%  Similarity=-0.045  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh---HHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          557 EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES---YAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       557 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ...|+.+..+|...|++++|...++++++++|++...   |..++.+|...|+.++|...+++..+
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344444444444444445554444444444444422   44444444444554444444444443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.69  E-value=1.4  Score=48.51  Aligned_cols=337  Identities=11%  Similarity=0.021  Sum_probs=167.5

Q ss_pred             cCCCCChhhHHH-----HHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcC---ChHHHHHHHhccCC--
Q 004369          169 AGNYPTNVTLGT-----ALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCG---SLNSAIKAFNRIRE--  238 (758)
Q Consensus       169 ~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~~~~--  238 (758)
                      -|+..+..-|..     ++.-+...+.+..|.++-..+-..-... ..++.....-+.+..   +-+.+..+=+++..  
T Consensus       426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~  504 (829)
T KOG2280|consen  426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL  504 (829)
T ss_pred             cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence            355544444433     3444455566666666655553211111 456666666666653   22333444444444  


Q ss_pred             CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCC----CCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHH
Q 004369          239 KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGI----QPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVR  314 (758)
Q Consensus       239 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~  314 (758)
                      ...++|..+.+---+.|+.+-|..+++.=...+-    -.+..-+...+.-+...|+.+...++.-.+.+.-.       
T Consensus       505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~-------  577 (829)
T KOG2280|consen  505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN-------  577 (829)
T ss_pred             CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH-------
Confidence            4566788888777788888888877664322211    01222344555666666766666666555443210       


Q ss_pred             HHHHHHHHhcCCHHHHHHHHccCCC-CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHH--HhH----hCCCCCC
Q 004369          315 NSIMYLYLKCGLVDEAQKLFDGMSH-VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFS--KLN----SSGMKPD  387 (758)
Q Consensus       315 ~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~--~m~----~~g~~p~  387 (758)
                        .-+...-..+...|..+|.+..+ .|..   .+-..| +           .++-.+++.-|.  ...    ..|..|+
T Consensus       578 --~s~l~~~l~~~p~a~~lY~~~~r~~~~~---~l~d~y-~-----------q~dn~~~~a~~~~q~~~~~~~~~~r~~~  640 (829)
T KOG2280|consen  578 --RSSLFMTLRNQPLALSLYRQFMRHQDRA---TLYDFY-N-----------QDDNHQALASFHLQASYAAETIEGRIPA  640 (829)
T ss_pred             --HHHHHHHHHhchhhhHHHHHHHHhhchh---hhhhhh-h-----------cccchhhhhhhhhhhhhhhhhhcccchh
Confidence              00001111122233333333221 1110   000111 1           222222222211  100    1122333


Q ss_pred             HHHHHHHHHHHhcccchHHHHHHHHH----------HH-HcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhH
Q 004369          388 LYTFSSILTICSRLVALEQGEQIHAL----------TL-KTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLIS  456 (758)
Q Consensus       388 ~~t~~~ll~a~~~~~~~~~a~~i~~~----------~~-~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~  456 (758)
                         ....-.+|++........+..+.          +. +.|....-.+.+--+.-+...|+..+|.++-.+.+-+|-..
T Consensus       641 ---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~  717 (829)
T KOG2280|consen  641 ---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRL  717 (829)
T ss_pred             ---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhh
Confidence               23333444444432222221111          11 11211111122222333445688888888888888888877


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 004369          457 WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFV  536 (758)
Q Consensus       457 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~  536 (758)
                      |-.-+.+++..+++++-+++-+.+.      .+.-|.-...+|.+.|+.++|.+++.+..   |..       -.+.+|.
T Consensus       718 ~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~  781 (829)
T KOG2280|consen  718 WWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYL  781 (829)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHH
Confidence            7777888888888877666655443      14556667778888888888888876552   211       3577788


Q ss_pred             HcCCHHHHHHHHH
Q 004369          537 RLGCIEEAFDFIK  549 (758)
Q Consensus       537 ~~g~~~~A~~~~~  549 (758)
                      +.|++.+|.++--
T Consensus       782 ~~~~~~eAad~A~  794 (829)
T KOG2280|consen  782 RVGDVKEAADLAA  794 (829)
T ss_pred             HhccHHHHHHHHH
Confidence            8888888776543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.69  E-value=0.012  Score=58.12  Aligned_cols=93  Identities=13%  Similarity=0.064  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC---chhHHHHH
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNE----VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD---CESYAMLL  598 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~  598 (758)
                      .|..-+..+.+.|++++|...|+.+ ...|+.    ..+--+...+...|++++|...|+++++..|++   +..+..++
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            3444444445556666666666655 223322    345556666666666666666666666665553   33444456


Q ss_pred             HHhhhCCCchhHHHHHHHhhh
Q 004369          599 DIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       599 ~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      .+|...|++++|.++++...+
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            666666777777666666654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.66  E-value=0.17  Score=54.37  Aligned_cols=32  Identities=16%  Similarity=0.049  Sum_probs=22.7

Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 004369          308 ASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH  339 (758)
Q Consensus       308 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  339 (758)
                      .|.+..|..|...-.+.-.++.|+..|-+..+
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d  720 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD  720 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence            67778888887777777777777776655543

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=96.65  E-value=0.031  Score=45.70  Aligned_cols=81  Identities=12%  Similarity=0.211  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccc--------cHHHHHHHHHHhhhhcCCCCCHH
Q 004369          456 SWTSMITGFANHSLSHQALQLFEDMLLAGV-RPNQVTFVGALAACSNAG--------MVYEALGYFEMMQKEYKIKPVMD  526 (758)
Q Consensus       456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~  526 (758)
                      +-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+..        ++-+.+.+++.|... +++|+.+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e  105 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE  105 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence            334456666677899999999999999999 899999999998766532        345567778888774 7888888


Q ss_pred             HHHHHHHHHHH
Q 004369          527 HYMCLIDMFVR  537 (758)
Q Consensus       527 ~~~~li~~~~~  537 (758)
                      +|+.++..+.+
T Consensus       106 tYnivl~~Llk  116 (120)
T PF08579_consen  106 TYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHH
Confidence            88888876654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.65  E-value=0.24  Score=49.97  Aligned_cols=138  Identities=15%  Similarity=0.275  Sum_probs=79.8

Q ss_pred             HHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHH
Q 004369          425 VGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANH-SLSHQALQLFEDMLLA----GVRPN--QVTFVGALA  497 (758)
Q Consensus       425 ~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~  497 (758)
                      .+...++.|.+.|++..|-+++.+           +...|... |++++|++.|++..+.    | .+.  ..++..+..
T Consensus        96 ~~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~  163 (282)
T PF14938_consen   96 CYEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD  163 (282)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence            344455667777777777665443           45566666 7888888888877652    2 221  334566667


Q ss_pred             HHhccccHHHHHHHHHHhhhhcC----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC------HHHHHHHHH
Q 004369          498 ACSNAGMVYEALGYFEMMQKEYK----IKPVM-DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN------EVIWSVFIA  565 (758)
Q Consensus       498 a~~~~g~~~~a~~~~~~~~~~~~----~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~ll~  565 (758)
                      .+.+.|++++|.++|+++....-    ...++ ..|-..+-++...|+...|.+.+++. ...|.      ......|+.
T Consensus       164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~  243 (282)
T PF14938_consen  164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE  243 (282)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence            78888889999988888765321    11222 23334445666778888888888876 33331      234555666


Q ss_pred             HHHHcCChhH
Q 004369          566 GCRRHGNMEL  575 (758)
Q Consensus       566 ~~~~~g~~~~  575 (758)
                      +|. .||.+.
T Consensus       244 A~~-~~D~e~  252 (282)
T PF14938_consen  244 AYE-EGDVEA  252 (282)
T ss_dssp             HHH-TT-CCC
T ss_pred             HHH-hCCHHH
Confidence            654 344433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.023  Score=57.43  Aligned_cols=83  Identities=12%  Similarity=0.100  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEE
Q 004369          558 VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKV  637 (758)
Q Consensus       558 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~  637 (758)
                      .+++.|...|.+.+++..|++..++.++++|+|.-+...-+.+|...|.++.|+..|+++.+                  
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k------------------  319 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK------------------  319 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH------------------
Confidence            45777888889999999999999999999999999999999999999999999999999986                  


Q ss_pred             EEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 004369          638 YSFKPNDGLHPQSAEIFKVLDELVEKAKC  666 (758)
Q Consensus       638 ~~f~~~~~~~~~~~~i~~~l~~l~~~m~~  666 (758)
                              ..|..+.|...|..+.+++++
T Consensus       320 --------~~P~Nka~~~el~~l~~k~~~  340 (397)
T KOG0543|consen  320 --------LEPSNKAARAELIKLKQKIRE  340 (397)
T ss_pred             --------hCCCcHHHHHHHHHHHHHHHH
Confidence                    456667777777777666654

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.62  E-value=0.99  Score=46.02  Aligned_cols=104  Identities=17%  Similarity=0.230  Sum_probs=73.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHH
Q 004369          315 NSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSI  394 (758)
Q Consensus       315 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l  394 (758)
                      +..+.-+...|+...|.++-.+..-||-.-|-..|.+++.           .+++++-..+-..      +-.+.-|..+
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~-----------~~~w~eL~~fa~s------kKsPIGyepF  243 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAE-----------NKDWDELEKFAKS------KKSPIGYEPF  243 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHh-----------cCCHHHHHHHHhC------CCCCCChHHH
Confidence            3445556677888888888888877888888888888888           8888776654321      1234667777


Q ss_pred             HHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHH
Q 004369          395 LTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRV  445 (758)
Q Consensus       395 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~  445 (758)
                      +.+|.+.|+..+|..+...+          .+..-+.+|.++|++.+|.+.
T Consensus       244 v~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  244 VEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence            88888888877777666541          124567778888888887765

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=96.58  E-value=0.022  Score=46.58  Aligned_cols=80  Identities=16%  Similarity=0.039  Sum_probs=64.3

Q ss_pred             HHHHHHHHhhCCChhhHHHHHHHHHHCCC-CCChhhHHHHHHHHcccCC--------hHHHHHHHHHHHHhCCCCchhHH
Q 004369          244 WTTVIGACGENGEAVQGLRFFSKMLSEGI-QPNEFTLTSISSVCGTMLS--------LRVGAQVHSLGIKLGYASNLRVR  314 (758)
Q Consensus       244 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~  314 (758)
                      -...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..-        +-....++..++..++.|+..+|
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            34456666777999999999999999999 8999999999998876532        33456778888888999999999


Q ss_pred             HHHHHHHHh
Q 004369          315 NSIMYLYLK  323 (758)
Q Consensus       315 ~~li~~~~~  323 (758)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            998887765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.57  E-value=0.047  Score=46.40  Aligned_cols=91  Identities=19%  Similarity=0.231  Sum_probs=63.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHH
Q 004369          460 MITGFANHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFV  536 (758)
Q Consensus       460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~  536 (758)
                      +..++-..|+.++|+.+|++....|+...  ...+..+.+.+...|++++|..+++.....+.-.+ +......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            44566778889999999999888886655  34666777788888899999888888876432211 1122223445677


Q ss_pred             HcCCHHHHHHHHHH
Q 004369          537 RLGCIEEAFDFIKK  550 (758)
Q Consensus       537 ~~g~~~~A~~~~~~  550 (758)
                      ..|+.++|++.+-.
T Consensus        87 ~~gr~~eAl~~~l~  100 (120)
T PF12688_consen   87 NLGRPKEALEWLLE  100 (120)
T ss_pred             HCCCHHHHHHHHHH
Confidence            78888888876654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.55  E-value=0.0041  Score=42.21  Aligned_cols=42  Identities=24%  Similarity=0.370  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 004369          558 VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLD  599 (758)
Q Consensus       558 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  599 (758)
                      .+|..+..++...|++++|+++++++++..|+|+..+..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            367889999999999999999999999999999988887764

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.54  E-value=0.061  Score=54.12  Aligned_cols=152  Identities=13%  Similarity=0.078  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhhh---hcCC-CCCHH
Q 004369          456 SWTSMITGFANHSLSHQALQLFEDML----LAGVRP-NQVTFVGALAACSNAGMVYEALGYFEMMQK---EYKI-KPVMD  526 (758)
Q Consensus       456 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~-~p~~~  526 (758)
                      .|..|...|.-.|+++.|+..-+.-+    +-|-+. ....+..+..++.-.|+++.|.+.|+....   +.|- .....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            45555555555667777765543322    112111 123455666666667777777777665422   0111 12234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccC-----CC-Cch
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKM--------DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK-----PK-DCE  592 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----p~-~~~  592 (758)
                      ..-+|.+.|.-...+++|+.++.+-        ...-....+.+|..++...|..+.|+..+++.+++.     |. ...
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT  356 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT  356 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence            4456677777777777777776553        111234566778888888888888887777766532     21 223


Q ss_pred             hHHHHHHHhhhCCCc
Q 004369          593 SYAMLLDIFVSAGRW  607 (758)
Q Consensus       593 ~~~~l~~~~~~~g~~  607 (758)
                      ....|++.-...|.-
T Consensus       357 ar~Nlsdl~~~lG~~  371 (639)
T KOG1130|consen  357 ARDNLSDLILELGQE  371 (639)
T ss_pred             hhhhhHHHHHHhCCC
Confidence            444555555555543

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.39  E-value=0.25  Score=41.68  Aligned_cols=140  Identities=11%  Similarity=0.070  Sum_probs=85.3

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004369          465 ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA  544 (758)
Q Consensus       465 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A  544 (758)
                      .-.|..++..++..+...+   .+..-++.++.-....-+-+-..+.++.+-+-+.+.              .+|++...
T Consensus        13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV   75 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV   75 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred             HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence            3457777888888777653   234445555544444555555666666665433332              23444444


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCC
Q 004369          545 FDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLS  623 (758)
Q Consensus       545 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  623 (758)
                      ...+-.++.  +..-.+.-+......|+-+.-.+++..+.+.+..+|.....++++|.+.|...++.+++++.-++|++
T Consensus        76 i~C~~~~n~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   76 IECYAKRNK--LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            444444332  33445666778888999999999999998766677899999999999999999999999999998875

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.36  E-value=0.067  Score=52.81  Aligned_cols=100  Identities=14%  Similarity=0.078  Sum_probs=64.6

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC----CHHHHHHHHH
Q 004369          492 FVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP----NEVIWSVFIA  565 (758)
Q Consensus       492 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~  565 (758)
                      |...+.-..+.|++++|...|+.+.+.+.-.+- ...+--+...|...|++++|...|+++ ...|    ....|..+..
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            444443334457777777777777664422211 234556777777778888887777776 2222    2344555666


Q ss_pred             HHHHcCChhHHHHHHHHHhccCCCCc
Q 004369          566 GCRRHGNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       566 ~~~~~g~~~~a~~~~~~~~~~~p~~~  591 (758)
                      .+...|+.+.|...++++++..|++.
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            77788889999999998888888764

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.05  E-value=0.41  Score=45.56  Aligned_cols=137  Identities=13%  Similarity=0.103  Sum_probs=86.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcC----CCCCHHHHHHHHH
Q 004369          458 TSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYK----IKPVMDHYMCLID  533 (758)
Q Consensus       458 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~  533 (758)
                      +.++..+.-+|.+.-.+.++++.++...+-+......+.+.-.+.|+.+.|..+|+...+..+    +.-...+...+..
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            455666666777888888888888866566677777788888888999999999887665322    2222222233334


Q ss_pred             HHHHcCCHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369          534 MFVRLGCIEEAFDFIKKMD-FEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESY  594 (758)
Q Consensus       534 ~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  594 (758)
                      .|.-+.++.+|...+.+.. ..| |+...|.=.-...-.|+...|.+..+.+++..|....+-
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~e  323 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHE  323 (366)
T ss_pred             heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence            4555667777777777762 223 333333333333345777778888888888777644433

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.04  E-value=0.33  Score=46.10  Aligned_cols=126  Identities=12%  Similarity=0.052  Sum_probs=88.1

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCh-----HHHHhHHhhhHHhcCCHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSD-----VVVGTALVNMYKKCGRIE  440 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~-----~~~~~~Li~~y~~~g~~~  440 (758)
                      .+.+.-.+.++.+.++...+.++.....+.+.-.+.|+.+.+...++...+..-..|     ..+.......|.-..++.
T Consensus       190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a  269 (366)
T KOG2796|consen  190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA  269 (366)
T ss_pred             chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence            677777888888888876666788888888888889999999888887776433333     333333344456677888


Q ss_pred             HHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004369          441 RASRVFVEMSTR---TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFV  493 (758)
Q Consensus       441 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  493 (758)
                      .|...|.++...   |++.-|.-.-...-.|+..+|++..+.|...  .|...+-+
T Consensus       270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e  323 (366)
T KOG2796|consen  270 EAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE  323 (366)
T ss_pred             HHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence            888888877643   4555555444555568888888888888874  45544444

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.01  E-value=0.011  Score=46.10  Aligned_cols=24  Identities=33%  Similarity=0.596  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKK  550 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~  550 (758)
                      .|+.+...|.+.|++++|++.+++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~   30 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEK   30 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344444444444444444444444

...

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.95  E-value=0.094  Score=45.07  Aligned_cols=51  Identities=12%  Similarity=0.182  Sum_probs=35.1

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHc
Q 004369          520 KIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM----DFEPNEVIWSVFIAGCRRH  570 (758)
Q Consensus       520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~  570 (758)
                      ...|+.....+++.+|+..|++..|+++++..    +++-+..+|..|+.=+...
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            45577777777777777777777777777665    5444567777777655443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.89  E-value=1.8  Score=41.64  Aligned_cols=195  Identities=19%  Similarity=0.190  Sum_probs=141.3

Q ss_pred             HHHHhHHhhhHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004369          423 VVVGTALVNMYKKCGRIERASRVFVEMS-----TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALA  497 (758)
Q Consensus       423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  497 (758)
                      ..........+...+.+..+...+....     ......+..+...+...+++.++.+.+.........+. ........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  137 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL  137 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence            4666677777888888888888877754     23445666777777788888899999988887543332 22222222


Q ss_pred             -HHhccccHHHHHHHHHHhhhhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC--HHHHHHHHHHHHHcC
Q 004369          498 -ACSNAGMVYEALGYFEMMQKEYKI--KPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN--EVIWSVFIAGCRRHG  571 (758)
Q Consensus       498 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g  571 (758)
                       .+...|+++.+...+..... ..-  ......+......+...++.++|...+.+. ...|+  ...+..+...+...+
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence             67888999999999988843 111  123444455555577888999999998887 44444  567888888888888


Q ss_pred             ChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          572 NMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       572 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +.+.|...+...+...|.....+..+...+...|.++++...+.....
T Consensus       217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999888666777777777777778888888777765

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.87  E-value=0.083  Score=47.24  Aligned_cols=106  Identities=21%  Similarity=0.265  Sum_probs=70.4

Q ss_pred             hccccHHHHHHHHHHhhhhcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 004369          500 SNAGMVYEALGYFEMMQKEYKIK--PVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGF  577 (758)
Q Consensus       500 ~~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~  577 (758)
                      ...|+.+.+...+..+...+.-+  |+...          ...+......++++    -..+...++..+...|+++.|.
T Consensus        17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a~   82 (146)
T PF03704_consen   17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEAL   82 (146)
T ss_dssp             HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHHH
Confidence            44567777777777766543211  11110          11222222333332    1234566777888999999999


Q ss_pred             HHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          578 YAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       578 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ..+++++..+|-+...|..+..+|...|+..+|.++++.++.
T Consensus        83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988864

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.29  Score=47.93  Aligned_cols=102  Identities=16%  Similarity=0.099  Sum_probs=72.0

Q ss_pred             CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHc-CCCC-CHHHHHH
Q 004369          488 NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG---CIEEAFDFIKKM-DFEP-NEVIWSV  562 (758)
Q Consensus       488 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p-~~~~~~~  562 (758)
                      |...|..|..+|...|+.+.|...|....+-.|  ++.+.+..+..++....   ...++.++|+++ ..+| |..+...
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            466777777888888888888888877765323  33455555665554333   345678888887 6666 5556666


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369          563 FIAGCRRHGNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  591 (758)
                      |..++...|++.+|...++.+++..|.+.
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            77788888888888888888888887653

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.73  E-value=0.062  Score=44.98  Aligned_cols=90  Identities=11%  Similarity=0.146  Sum_probs=73.5

Q ss_pred             HHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC----chhHHHHHHHhhhCCC
Q 004369          533 DMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD----CESYAMLLDIFVSAGR  606 (758)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~  606 (758)
                      -++...|+++.|++.|.+. .+-| +...||.-..+++-.|+.++|+.-+++++++.-+.    ...|+.-+.+|-..|+
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            3567889999999999887 5555 67789999999999999999999999999875332    2367788889999999


Q ss_pred             chhHHHHHHHhhhCCC
Q 004369          607 WEDVAVVKNLTREEKL  622 (758)
Q Consensus       607 ~~~a~~~~~~m~~~~~  622 (758)
                      -+.|+.-|+...+.|-
T Consensus       131 dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  131 DDAARADFEAAAQLGS  146 (175)
T ss_pred             hHHHHHhHHHHHHhCC
Confidence            9999998888877553

>PRK11906 transcriptional regulator; Provisional

Probab=95.70  E-value=0.18  Score=52.68  Aligned_cols=134  Identities=8%  Similarity=0.053  Sum_probs=68.6

Q ss_pred             hHH--HHHHHHHHhc-----CCHHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHhc---------cccHHHHHHHHHHhh
Q 004369          455 ISW--TSMITGFANH-----SLSHQALQLFEDMLL-AGVRPNQV-TFVGALAACSN---------AGMVYEALGYFEMMQ  516 (758)
Q Consensus       455 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~  516 (758)
                      ..|  ..++.|....     -..+.|+.+|.+... +.+.|+.. .|..+..++..         .....+|.+.-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            455  5555554441     135677778888772 23666633 34433332211         112334444444443


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369          517 KEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD  590 (758)
Q Consensus       517 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  590 (758)
                      +  --.-|......+..++.-.|+++.|...|++. ...|| ..+|......+.-.|+.++|.+.+++.++++|..
T Consensus       332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence            3  11223444444555555555566666666665 45553 3445555555555666666666666666666653

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.67  E-value=3.9  Score=44.07  Aligned_cols=183  Identities=12%  Similarity=0.060  Sum_probs=125.7

Q ss_pred             ChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHH
Q 004369          421 SDVVVGTALVNMYKKCGRIERASRVFVEMSTR---TLISWTSMITGFANHSLSHQALQLFEDMLLAGV--RPNQVTFVGA  495 (758)
Q Consensus       421 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~l  495 (758)
                      ++..+|..-++.-.+.|+.+.+.-+|++..-+   =...|--.+.-....|+.+-|..++....+--+  .|....+.+.
T Consensus       295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~  374 (577)
T KOG1258|consen  295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR  374 (577)
T ss_pred             HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence            35677888888888999999999999987644   223455555444455888888877776655322  2333333333


Q ss_pred             HHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHH---HHHHHc-CCCCCHHHHHHHHHH----
Q 004369          496 LAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAF---DFIKKM-DFEPNEVIWSVFIAG----  566 (758)
Q Consensus       496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~~----  566 (758)
                      +  +...|+++.|..+++.+.++  . |+ +..-.--+....+.|..+.+.   +++... +.+-+..+...+.--    
T Consensus       375 f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~  449 (577)
T KOG1258|consen  375 F--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL  449 (577)
T ss_pred             H--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence            3  56688999999999999885  3 55 333444567778999999888   555544 222233333333322    


Q ss_pred             -HHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCch
Q 004369          567 -CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWE  608 (758)
Q Consensus       567 -~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  608 (758)
                       +...++.+.|..++.++.+..|++...|..+.+.....+...
T Consensus       450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~  492 (577)
T KOG1258|consen  450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR  492 (577)
T ss_pred             HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence             334578999999999999999999999999999887776433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.64  E-value=0.016  Score=45.34  Aligned_cols=63  Identities=11%  Similarity=0.140  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhcc----CCC---CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          557 EVIWSVFIAGCRRHGNMELGFYAAEQLLKL----KPK---DCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       557 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ..+++.+...+...|++++|+..+++++++    +++   -..++..++.+|...|++++|.+++++..+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            356889999999999999999999999865    222   245788999999999999999999988654

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.54  E-value=0.82  Score=44.77  Aligned_cols=52  Identities=21%  Similarity=0.127  Sum_probs=29.9

Q ss_pred             HhhcCCChHHHHHHHccCCC--CCcc-h---HHHHHHHHHhCCCchHHHHHHHHHHHc
Q 004369          118 VYGKCGNMEEAQKVFDNLPR--INVV-S---WTSLISGYVQNSQPELAIHVFLDMLEA  169 (758)
Q Consensus       118 ~~~~~g~~~~A~~~f~~~~~--~~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~  169 (758)
                      .+.+.|++++|.+.|+.+..  |+.. .   .-.+..++.+.+++++|+..|++..+.
T Consensus        41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~   98 (243)
T PRK10866         41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   98 (243)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            33456777777777766653  2211 1   122344566777777777777777664

>PRK11906 transcriptional regulator; Provisional

Probab=95.44  E-value=2.2  Score=44.88  Aligned_cols=118  Identities=13%  Similarity=0.178  Sum_probs=85.1

Q ss_pred             cHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC
Q 004369          504 MVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVR---------LGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHG  571 (758)
Q Consensus       504 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g  571 (758)
                      ..+.|..+|.+......++|+ ...|..+...+..         .....+|.++.++. .+.| |......+..+....+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence            456778888888744456666 4455544443321         22455667777666 5666 6777777777777778


Q ss_pred             ChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369          572 NMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       572 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  621 (758)
                      +++.|...++++..++|+.+.++...++...-.|+.++|.+.++...+..
T Consensus       353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs  402 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE  402 (458)
T ss_pred             chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence            88999999999999999988899999998888999999988888855543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.41  E-value=4  Score=42.41  Aligned_cols=73  Identities=18%  Similarity=0.260  Sum_probs=57.6

Q ss_pred             HHHHHHcCCCC----CHHHHHHHHHH--HHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369          545 FDFIKKMDFEP----NEVIWSVFIAG--CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       545 ~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                      +.++++.|+.|    +...-|.|..|  ...+|++.++.-...=+.+..| ++.+|..++-.+....+++||-.++..+.
T Consensus       444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            44555556665    34456667666  4678999999988888889999 78999999999999999999999988764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.41  E-value=5.6  Score=44.03  Aligned_cols=113  Identities=13%  Similarity=0.135  Sum_probs=84.9

Q ss_pred             CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004369          488 NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGC  567 (758)
Q Consensus       488 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~  567 (758)
                      ...|.+--+.-+...|...+|.++-.+.    .+ ||...|---+.+++..+++++-+++-+++.   .+.-|.-+..+|
T Consensus       683 ~dlSl~dTv~~li~~g~~k~a~ql~~~F----ki-pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c  754 (829)
T KOG2280|consen  683 VDLSLHDTVTTLILIGQNKRAEQLKSDF----KI-PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEAC  754 (829)
T ss_pred             ccCcHHHHHHHHHHccchHHHHHHHHhc----CC-cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHH
Confidence            3444555556677888888888776554    33 888888888999999999999888887763   134466778899


Q ss_pred             HHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHH
Q 004369          568 RRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNL  616 (758)
Q Consensus       568 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  616 (758)
                      .+.|+.++|.+++-+.-.        +.-...+|.+.|++.+|.+.--+
T Consensus       755 ~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  755 LKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence            999999999988766522        22678899999999999876443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.38  E-value=1.5  Score=41.76  Aligned_cols=163  Identities=13%  Similarity=0.120  Sum_probs=82.6

Q ss_pred             hhHHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcc
Q 004369          431 NMYKKCGRIERASRVFVEMSTR------TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNA  502 (758)
Q Consensus       431 ~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~  502 (758)
                      ..+...|++++|.+.|+.+...      -....-.++.++.+.|++++|...+++.++.  -|+  ..-+...+.+.+..
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence            3445566777777777666521      1123445566666667777777777766653  222  22222222222221


Q ss_pred             ccH-------------HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004369          503 GMV-------------YEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRR  569 (758)
Q Consensus       503 g~~-------------~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~  569 (758)
                      ...             .+|...                +..++.-|=......+|...+..+...--. ---.+..-|.+
T Consensus        91 ~~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~la~-~e~~ia~~Y~~  153 (203)
T PF13525_consen   91 KQIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNRLAE-HELYIARFYYK  153 (203)
T ss_dssp             HHHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred             HhCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            111             112222                223333333333344444333332100000 01124556778


Q ss_pred             cCChhHHHHHHHHHhccCCCCch---hHHHHHHHhhhCCCchhHHH
Q 004369          570 HGNMELGFYAAEQLLKLKPKDCE---SYAMLLDIFVSAGRWEDVAV  612 (758)
Q Consensus       570 ~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~  612 (758)
                      .|.+..|..-++.+++.-|+.+.   ....|+.+|.+.|..+.+..
T Consensus       154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence            89999999999999999888543   55678888999998875443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.37  E-value=1.2  Score=42.37  Aligned_cols=140  Identities=16%  Similarity=0.126  Sum_probs=71.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 004369          460 MITGFANHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR  537 (758)
Q Consensus       460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~  537 (758)
                      ....+...|++.+|+..|+++...-....  ......+..++.+.|++++|...++...+.+.-.|... +.....+.+.
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~   89 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSY   89 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHH
Confidence            34455667777777777777776421111  23445556667777777777777777766555444421 1111111110


Q ss_pred             cCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch-----------------hHHHHHHH
Q 004369          538 LGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE-----------------SYAMLLDI  600 (758)
Q Consensus       538 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~  600 (758)
                      ........                   ......+....|...++.+++.-|+++-                 .-..++..
T Consensus        90 ~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~  150 (203)
T PF13525_consen   90 YKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF  150 (203)
T ss_dssp             HHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000000                   0011122334455555555555555322                 33457888


Q ss_pred             hhhCCCchhHHHHHHHhhh
Q 004369          601 FVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       601 ~~~~g~~~~a~~~~~~m~~  619 (758)
                      |.+.|+|..|..-++.+.+
T Consensus       151 Y~~~~~y~aA~~r~~~v~~  169 (203)
T PF13525_consen  151 YYKRGKYKAAIIRFQYVIE  169 (203)
T ss_dssp             HHCTT-HHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHH
Confidence            9999999999999999876

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.32  E-value=4  Score=41.86  Aligned_cols=157  Identities=12%  Similarity=0.023  Sum_probs=102.5

Q ss_pred             HHHHHHHH-HHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhh--HHhcCCHHHHHHHHHhcCCCChh----------
Q 004369          389 YTFSSILT-ICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNM--YKKCGRIERASRVFVEMSTRTLI----------  455 (758)
Q Consensus       389 ~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~--y~~~g~~~~A~~~~~~~~~~~~~----------  455 (758)
                      .++..+-. .+...++.+.+.++-..+.+..   ....+..++..  +--.++.+.|...|++...-|+.          
T Consensus       169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~  245 (486)
T KOG0550|consen  169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM  245 (486)
T ss_pred             hHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence            44433322 3466788888888877776643   11222222222  33467889999999887744332          


Q ss_pred             -----HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HH
Q 004369          456 -----SWTSMITGFANHSLSHQALQLFEDMLLA---GVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MD  526 (758)
Q Consensus       456 -----~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~  526 (758)
                           .|..-..-..+.|++.+|.+.|.+.+..   .++|+...|.....+..+.|+.++|+.-.+...+   +.|. ..
T Consensus       246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syik  322 (486)
T KOG0550|consen  246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIK  322 (486)
T ss_pred             HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHH
Confidence                 2333344567889999999999998863   3455666777777788899999999998887753   4443 22


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKM  551 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m  551 (758)
                      .|-.-..++.-.+++++|.+-+++.
T Consensus       323 all~ra~c~l~le~~e~AV~d~~~a  347 (486)
T KOG0550|consen  323 ALLRRANCHLALEKWEEAVEDYEKA  347 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344555667888998888876

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.29  E-value=0.22  Score=42.74  Aligned_cols=98  Identities=9%  Similarity=0.160  Sum_probs=66.6

Q ss_pred             HHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 004369          423 VVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNA  502 (758)
Q Consensus       423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~  502 (758)
                      ..++.+++-++++.|+++....+.+..=.-|+       .+-...+.         --......|+..+..+++.+++..
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n   65 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN   65 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence            34556666666666666666666654321111       00000110         011234779999999999999999


Q ss_pred             ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 004369          503 GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFV  536 (758)
Q Consensus       503 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~  536 (758)
                      |++..|.++.+...+.|+++-+...|..|+.-..
T Consensus        66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999888888988876443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.22  E-value=0.12  Score=53.89  Aligned_cols=64  Identities=9%  Similarity=0.032  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369          524 VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNE----VIWSVFIAGCRRHGNMELGFYAAEQLLKLK  587 (758)
Q Consensus       524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  587 (758)
                      +...++.+..+|.+.|++++|+..|++. .+.|+.    .+|..+..+|...|+.++|+..+++++++.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            3567778888888888888888888876 667753    358888888888888888888888888863

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.17  E-value=3.1  Score=39.80  Aligned_cols=218  Identities=18%  Similarity=0.129  Sum_probs=157.5

Q ss_pred             ChhHHHHHHHHhHhCCCC-CCHHHHHHHHHHHhcccchHHHHHHHHHHHHc-CCCChHHHHhHHhhhHHhcCCHHHHHHH
Q 004369          368 GGTEALSIFSKLNSSGMK-PDLYTFSSILTICSRLVALEQGEQIHALTLKT-GFLSDVVVGTALVNMYKKCGRIERASRV  445 (758)
Q Consensus       368 ~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~Li~~y~~~g~~~~A~~~  445 (758)
                      ....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++...+.+.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (291)
T COG0457          38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL  117 (291)
T ss_pred             hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence            334455555555443222 13566667777778888888888877776653 3455666777788888888999999999


Q ss_pred             HHhcCCC--C-hhHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369          446 FVEMSTR--T-LISWTSMIT-GFANHSLSHQALQLFEDMLLAGVRP----NQVTFVGALAACSNAGMVYEALGYFEMMQK  517 (758)
Q Consensus       446 ~~~~~~~--~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  517 (758)
                      +......  + ...+..... .+...|+.+.|...+++...  ..|    ....+......+...++.+++...+....+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            9887642  2 233333444 78899999999999999965  343    234444455556778999999999999876


Q ss_pred             hcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          518 EYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       518 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      .  ... ....+..+...+...+.+++|...+... ...|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus       196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            2  333 4677888899999999999999999988 55554 555666666666777899999999999999887

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.08  E-value=3  Score=39.58  Aligned_cols=199  Identities=15%  Similarity=0.102  Sum_probs=108.0

Q ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCCh--hHHHHHHHHHHhcC
Q 004369          391 FSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTL--ISWTSMITGFANHS  468 (758)
Q Consensus       391 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g  468 (758)
                      |...-.++....+++.+...+....+. .+.+...|.       ....++.|.-+.+++.+-+.  ..|+--...|..+|
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G  105 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG  105 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence            444445666677777777765555431 111111111       12234444444555443322  34555667788888


Q ss_pred             CHHHHHHHHHHHHH--cCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004369          469 LSHQALQLFEDMLL--AGVRPNQV--TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA  544 (758)
Q Consensus       469 ~~~~A~~~~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A  544 (758)
                      .++-|-..+++.-+  .++.|+..  .|.--+......++...|                .+.|......|.+..+++||
T Consensus       106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~sr~lVrl~kf~Ea  169 (308)
T KOG1585|consen  106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKCSRVLVRLEKFTEA  169 (308)
T ss_pred             CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHhhhHhhhhHHhhHH
Confidence            87777666665443  22444421  222222222222222222                23455556677788888887


Q ss_pred             HHHHHHcC-------CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhcc----CCCCchhHHHHHHHhhhCCCchhHHH
Q 004369          545 FDFIKKMD-------FEPNE-VIWSVFIAGCRRHGNMELGFYAAEQLLKL----KPKDCESYAMLLDIFVSAGRWEDVAV  612 (758)
Q Consensus       545 ~~~~~~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~  612 (758)
                      -..|.+-+       --|+. ..+-+.+-.+....|+..|++.++.--+.    +|++..+...|..+| ..|+.+++.+
T Consensus       170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k  248 (308)
T KOG1585|consen  170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK  248 (308)
T ss_pred             HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence            77665541       11222 22444555556667888899888886553    466777777887777 4677777766


Q ss_pred             HH
Q 004369          613 VK  614 (758)
Q Consensus       613 ~~  614 (758)
                      +.
T Consensus       249 vl  250 (308)
T KOG1585|consen  249 VL  250 (308)
T ss_pred             HH
Confidence            54

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.02  E-value=0.47  Score=41.26  Aligned_cols=58  Identities=19%  Similarity=0.280  Sum_probs=39.5

Q ss_pred             HHHcCCHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369          535 FVRLGCIEEAFDFIKKM----DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE  592 (758)
Q Consensus       535 ~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  592 (758)
                      ..+.|++++|.+.|+.+    +..| ..-.-..|+.++.+.+++++|...+++.+++.|.++.
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            34667777777777766    3333 2334556777788888888888888888888776543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.92  E-value=0.31  Score=49.68  Aligned_cols=138  Identities=14%  Similarity=0.064  Sum_probs=95.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCC
Q 004369          461 ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGC  540 (758)
Q Consensus       461 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  540 (758)
                      .+.|.+.|++..|...|++....            |. +...-+.++......         .-...+..|.-.|.+.+.
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~  272 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE  272 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence            45677777787777777776542            00 111111222221111         112456677788899999


Q ss_pred             HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhH-HHHHHHh
Q 004369          541 IEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDV-AVVKNLT  617 (758)
Q Consensus       541 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m  617 (758)
                      +.+|++.-++. ..+| |....--=..+|...|+++.|+..++++++++|+|-.+...|+.+-.+..+..+. .+++..|
T Consensus       273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM  352 (397)
T ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888877 5555 6666666678899999999999999999999999999888888887777666554 6677777


Q ss_pred             hhC
Q 004369          618 REE  620 (758)
Q Consensus       618 ~~~  620 (758)
                      -.+
T Consensus       353 F~k  355 (397)
T KOG0543|consen  353 FAK  355 (397)
T ss_pred             hhc
Confidence            543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.84  E-value=8.6  Score=43.20  Aligned_cols=166  Identities=10%  Similarity=0.079  Sum_probs=96.4

Q ss_pred             CCchhHHHHHHHHHHHcCCCCCcchHHHHHHH----hhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHH
Q 004369           52 EPVRSLGFQEALSVLTEGPKVQTSSYVSLLQE----CVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEE  127 (758)
Q Consensus        52 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~  127 (758)
                      ...+..|+.+...-   +.  +..+...+...    |-+.|+++.|..-+-+-+.. +.|.     .+|.-|....++..
T Consensus       347 K~ly~~Ai~LAk~~---~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~Ikn  415 (933)
T KOG2114|consen  347 KNLYKVAINLAKSQ---HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKN  415 (933)
T ss_pred             hhhHHHHHHHHHhc---CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHH
Confidence            56777787766542   22  33344444444    44678888887666544321 1222     23444444445555


Q ss_pred             HHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHh
Q 004369          128 AQKVFDNLPR---INVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKY  204 (758)
Q Consensus       128 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  204 (758)
                      -...++.+.+   .+...-..|+.+|.+.++.++-.++.+.-. .|..  .+-+-..+..|.+.+-+++|..+-....+ 
T Consensus       416 Lt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-  491 (933)
T KOG2114|consen  416 LTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-  491 (933)
T ss_pred             HHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence            5555555543   234445678888888888888777766544 3321  22345667777777777777665443322 


Q ss_pred             CCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCC
Q 004369          205 QTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREK  239 (758)
Q Consensus       205 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~  239 (758)
                          ...+...++   -..|++++|.+.+..++-+
T Consensus       492 ----he~vl~ill---e~~~ny~eAl~yi~slp~~  519 (933)
T KOG2114|consen  492 ----HEWVLDILL---EDLHNYEEALRYISSLPIS  519 (933)
T ss_pred             ----CHHHHHHHH---HHhcCHHHHHHHHhcCCHH
Confidence                334444443   3568899999999998753

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.79  E-value=0.26  Score=47.28  Aligned_cols=99  Identities=16%  Similarity=0.159  Sum_probs=79.8

Q ss_pred             HHHHHHhcC--CCChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc----------
Q 004369          442 ASRVFVEMS--TRTLISWTSMITGFANH-----SLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGM----------  504 (758)
Q Consensus       442 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~----------  504 (758)
                      .++.|....  ++|-.+|-+++..|..+     +..+-....++.|.+-|+.-|..+|..||+.+-+..-          
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F  132 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF  132 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence            355666666  67888888888888754     5577777788999999999999999999998765332          


Q ss_pred             ------HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCH
Q 004369          505 ------VYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCI  541 (758)
Q Consensus       505 ------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  541 (758)
                            -+=++.++++|.. +|+.||.++-..|++++++.|..
T Consensus       133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence                  2347889999976 79999999999999999999864

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.27  E-value=0.98  Score=45.13  Aligned_cols=117  Identities=20%  Similarity=0.177  Sum_probs=52.1

Q ss_pred             HHHHHhccccHHHHHHHHHHhhhhcCC--CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHc-------CCCC-----CHH
Q 004369          495 ALAACSNAGMVYEALGYFEMMQKEYKI--KP--VMDHYMCLIDMFVRLGCIEEAFDFIKKM-------DFEP-----NEV  558 (758)
Q Consensus       495 ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-----~~~  558 (758)
                      +-.|..-.+.++++++.|+.+.+--.-  +|  ...+|..|...|++..++++|.-+..+.       +++-     ...
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            333444444555555555554431110  11  1234555566666666665555444433       1110     011


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhccC--CCC----chhHHHHHHHhhhCCCchhHH
Q 004369          559 IWSVFIAGCRRHGNMELGFYAAEQLLKLK--PKD----CESYAMLLDIFVSAGRWEDVA  611 (758)
Q Consensus       559 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~  611 (758)
                      +.-.+.-+++..|.+..|.+..+++.++.  ..|    ......++++|-..|+.+.|.
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af  266 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAF  266 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHH
Confidence            12223345555566555555555554431  122    223334556666655555443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.17  E-value=0.32  Score=47.03  Aligned_cols=57  Identities=14%  Similarity=0.088  Sum_probs=26.6

Q ss_pred             HHHHHHHcCChhHHHHHHHHHhccCCC---CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          563 FIAGCRRHGNMELGFYAAEQLLKLKPK---DCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       563 ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      |..++...|+++.|...|..+.+-.|+   -|..+.-|+.+..+.|+.++|..+++...+
T Consensus       184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            344444445555555444444443332   233444444455555555555555444443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.14  E-value=10  Score=44.35  Aligned_cols=94  Identities=20%  Similarity=0.222  Sum_probs=52.5

Q ss_pred             HHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHH--HHHHH
Q 004369          318 MYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYT--FSSIL  395 (758)
Q Consensus       318 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll  395 (758)
                      .-+|.++|+.++|.+.+..                             .|++.+|+.+-.+|...   -|...  -..|.
T Consensus       959 al~Ye~~GklekAl~a~~~-----------------------------~~dWr~~l~~a~ql~~~---~de~~~~a~~L~ 1006 (1265)
T KOG1920|consen  959 ALMYERCGKLEKALKAYKE-----------------------------CGDWREALSLAAQLSEG---KDELVILAEELV 1006 (1265)
T ss_pred             HHHHHHhccHHHHHHHHHH-----------------------------hccHHHHHHHHHhhcCC---HHHHHHHHHHHH
Confidence            4467777888877665543                             78888888887776432   12221  13444


Q ss_pred             HHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC
Q 004369          396 TICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST  451 (758)
Q Consensus       396 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~  451 (758)
                      .-+...++.-+|-++..+....        ..-.+..|++...+++|.++-..-..
T Consensus      1007 s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1007 SRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred             HHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhccc
Confidence            5555555555555554433221        12234456666677777766554443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.06  E-value=0.55  Score=41.86  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhh----hcCCCCCHHH
Q 004369          457 WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK----EYKIKPVMDH  527 (758)
Q Consensus       457 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~  527 (758)
                      ...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.++|+.+.+    +.|+.|+..+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            3445555566666666666666666632 23455666666666666766666666665532    3466666543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.97  E-value=0.12  Score=32.40  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369          558 VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD  590 (758)
Q Consensus       558 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  590 (758)
                      ..|..+...+...|++++|++.++++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            356777888888888888888888888888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.96  E-value=0.087  Score=33.12  Aligned_cols=32  Identities=16%  Similarity=0.163  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          558 VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       558 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      .+|..+...+...|++++|+..++++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            46778888888888888898888888888886

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.85  E-value=2.6  Score=45.87  Aligned_cols=115  Identities=17%  Similarity=0.098  Sum_probs=75.2

Q ss_pred             cccHHHHHHHHHHhhhhcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHc-C----CC-CCHHHHHHHHHHHHHcCChh
Q 004369          502 AGMVYEALGYFEMMQKEYKIKPVMDHYMC-LIDMFVRLGCIEEAFDFIKKM-D----FE-PNEVIWSVFIAGCRRHGNME  574 (758)
Q Consensus       502 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m-~----~~-p~~~~~~~ll~~~~~~g~~~  574 (758)
                      ....+.+.++++.+.+.|   |+...|.- -...+...|++++|++.|++. .    .+ .....+--+.+.+....+++
T Consensus       246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~  322 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE  322 (468)
T ss_pred             CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence            446677777777776543   55444332 345566777888888888765 1    11 12334555667777788999


Q ss_pred             HHHHHHHHHhccCCCCchhHH-HHHHHhhhCCCc-------hhHHHHHHHhhh
Q 004369          575 LGFYAAEQLLKLKPKDCESYA-MLLDIFVSAGRW-------EDVAVVKNLTRE  619 (758)
Q Consensus       575 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~  619 (758)
                      +|...+.++.+.+.-....|. ..+-+|...|+.       ++|.+++++...
T Consensus       323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            999999999887665444444 445666778888       777777777655

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=93.78  E-value=6.8  Score=37.79  Aligned_cols=165  Identities=16%  Similarity=0.181  Sum_probs=92.2

Q ss_pred             hcCCHHHHHHHHHhcCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhc---c--
Q 004369          435 KCGRIERASRVFVEMSTRTL------ISWTSMITGFANHSLSHQALQLFEDMLLAG-VRPNQVTFVGALAACSN---A--  502 (758)
Q Consensus       435 ~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~---~--  502 (758)
                      +.|++++|.+.|+.+....+      .+--.++-++-+.+++++|+..+++....- -.|| .-|...|.+++.   .  
T Consensus        46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~~  124 (254)
T COG4105          46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQIDD  124 (254)
T ss_pred             hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCCc
Confidence            56888888888888774322      233445667777888888888888877642 2333 233333333321   1  


Q ss_pred             --ccH---HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCChhH
Q 004369          503 --GMV---YEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVI--WSVFIAGCRRHGNMEL  575 (758)
Q Consensus       503 --g~~---~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~--~~~ll~~~~~~g~~~~  575 (758)
                        .+.   .+|..-|+.++.++   |+..             -..+|..-+....   |...  =.++..-|.+.|.+..
T Consensus       125 ~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~A  185 (254)
T COG4105         125 VTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVA  185 (254)
T ss_pred             cccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHH
Confidence              122   23333344444332   2211             1111111111110   0000  0134556778888888


Q ss_pred             HHHHHHHHhccCCCCc---hhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          576 GFYAAEQLLKLKPKDC---ESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       576 a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      |..-++.+++.-|+.+   ..+..|..+|...|..++|.+..+.+..
T Consensus       186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            8888888888766543   3555677788888988888888776654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.71  E-value=0.64  Score=45.85  Aligned_cols=159  Identities=10%  Similarity=-0.001  Sum_probs=111.5

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHH----HHHHHHHcCCH
Q 004369          466 NHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMC----LIDMFVRLGCI  541 (758)
Q Consensus       466 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~  541 (758)
                      -+|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-...++++..  ...||...|..    +.-++..+|-+
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence            367888888888888875 566677777777889999998888888888865  33555544433    33445688899


Q ss_pred             HHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC----CchhHHHHHHHhhhCCCchhHHHHHH
Q 004369          542 EEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK----DCESYAMLLDIFVSAGRWEDVAVVKN  615 (758)
Q Consensus       542 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~  615 (758)
                      ++|++.-++. .+.| |.-.-.++.......|+..++.+.+.+--..=..    -.-.|-+.+-.|...+.++.|.++++
T Consensus       192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            9999988887 6665 5556667777777888888888876654322111    12356667777778889999999887


Q ss_pred             HhhhCCCCCCCc
Q 004369          616 LTREEKLSETDD  627 (758)
Q Consensus       616 ~m~~~~~~~~~~  627 (758)
                      .=.-+.+.|..+
T Consensus       272 ~ei~k~l~k~Da  283 (491)
T KOG2610|consen  272 REIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHhhccch
Confidence            755545555544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.65  E-value=1.1  Score=46.98  Aligned_cols=152  Identities=13%  Similarity=0.109  Sum_probs=85.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004369          467 HSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFD  546 (758)
Q Consensus       467 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  546 (758)
                      ..+...-+++-++.++  +.||-.+...++ +-..+..+.++.+++++..+. +-    ..+..- ......|.   ..+
T Consensus       181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~lg~s-~~~~~~g~---~~e  248 (539)
T PF04184_consen  181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASLGKS-QFLQHHGH---FWE  248 (539)
T ss_pred             cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhhchh-hhhhcccc---hhh
Confidence            4455566666666665  567755443333 334455678888888877652 10    000000 00001111   111


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC--CchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCC
Q 004369          547 FIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK--DCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSE  624 (758)
Q Consensus       547 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  624 (758)
                      .+.+-...|-..+=..|...+++.|+.++|.+.++.+++..|.  +......|+..+...+++.++..++.+-.+-.+.|
T Consensus       249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk  328 (539)
T PF04184_consen  249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK  328 (539)
T ss_pred             hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence            1111122222333455777777888888888888888877664  45577788888888888888888887765544444


Q ss_pred             CCceeE
Q 004369          625 TDDWSW  630 (758)
Q Consensus       625 ~~~~s~  630 (758)
                      ...++|
T Consensus       329 SAti~Y  334 (539)
T PF04184_consen  329 SATICY  334 (539)
T ss_pred             hHHHHH
Confidence            443333

The molecular function of this protein is uncertain.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=93.61  E-value=2.5  Score=36.88  Aligned_cols=91  Identities=20%  Similarity=0.255  Sum_probs=46.1

Q ss_pred             hccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCCCHHHHHHHHHHHHH--c--
Q 004369          500 SNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM----DFEPNEVIWSVFIAGCRR--H--  570 (758)
Q Consensus       500 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~--~--  570 (758)
                      .+.|++++|.+.|+.+...+...|- ....--|+++|.+.|++++|...+++.    |..|+. -|-..+.|+..  .  
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYEQDE   99 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHHhh
Confidence            3455666666666666554433332 223344556666666666666555554    222321 12222222211  1  


Q ss_pred             -------------CChhHHHHHHHHHhccCCCCc
Q 004369          571 -------------GNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       571 -------------g~~~~a~~~~~~~~~~~p~~~  591 (758)
                                   +....|...++++++.-|++.
T Consensus       100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen  100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence                         125567777888888888753

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.58  E-value=15  Score=41.08  Aligned_cols=48  Identities=15%  Similarity=0.185  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhh
Q 004369          212 VGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQ  259 (758)
Q Consensus       212 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~  259 (758)
                      ++..+|+.+.-.|++++|-...-.|...+..-|.--+..+...++...
T Consensus       394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~  441 (846)
T KOG2066|consen  394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD  441 (846)
T ss_pred             HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence            344555666666777777776666666666666666666666655544

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.54  E-value=0.75  Score=44.29  Aligned_cols=112  Identities=9%  Similarity=0.077  Sum_probs=85.9

Q ss_pred             HHHHHHhccC--CCCcchHHHHHHHHhhC-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccC----------
Q 004369          228 SAIKAFNRIR--EKNVMSWTTVIGACGEN-----GEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTML----------  290 (758)
Q Consensus       228 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~----------  290 (758)
                      ..+..|...+  ++|-.+|-+++..+...     +..+=....++.|.+-|+.-|..+|..||+.+-+..          
T Consensus        52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~  131 (406)
T KOG3941|consen   52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV  131 (406)
T ss_pred             chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence            3456666666  57888888888777653     556666777889999999999999999999886543          


Q ss_pred             ------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHccCCC
Q 004369          291 ------SLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGL-VDEAQKLFDGMSH  339 (758)
Q Consensus       291 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~  339 (758)
                            .-+-+..++++|...|+.||-.+-..|++++.+.+- ..+..++.-.|++
T Consensus       132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk  187 (406)
T KOG3941|consen  132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK  187 (406)
T ss_pred             HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence                  235578899999999999999999999999998876 3445555555554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=93.52  E-value=7.6  Score=37.50  Aligned_cols=28  Identities=7%  Similarity=0.036  Sum_probs=23.5

Q ss_pred             hHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          593 SYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       593 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      .-..+++.|.+.|.|.-|..-++.|.+.
T Consensus       169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~  196 (254)
T COG4105         169 HEMAIARYYLKRGAYVAAINRFEEVLEN  196 (254)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence            3456788899999999999999999873

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=93.49  E-value=13  Score=42.17  Aligned_cols=70  Identities=17%  Similarity=0.052  Sum_probs=42.0

Q ss_pred             cchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCCh-------HHHHHHHHHHHHhCCCCChh
Q 004369          140 VVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESI-------RLGKQIHAYVVKYQTEDDTS  211 (758)
Q Consensus       140 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~~  211 (758)
                      ...| ++|=-+.|.|++++|.++..+... ........|...+..+....+-       +....-+.+.++.....|++
T Consensus       112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy  188 (613)
T PF04097_consen  112 DPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY  188 (613)
T ss_dssp             EEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred             CccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence            3445 556677899999999999866544 3555677888888888775332       23444455555444433554

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.37  E-value=1.8  Score=42.88  Aligned_cols=175  Identities=10%  Similarity=0.049  Sum_probs=114.3

Q ss_pred             hcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHH--HHHhccccHHH
Q 004369          435 KCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV--TFVGAL--AACSNAGMVYE  507 (758)
Q Consensus       435 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll--~a~~~~g~~~~  507 (758)
                      -.|+..+|-..++++.   +.|..+|+--=.+|..+|+-+.-...+++.... ..||..  +|..=+  -++...|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            3577888877788776   458889998889999999999999999988764 355543  332222  24567899999


Q ss_pred             HHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcC--CCC-C---HHHHHHHHHHHHHcCChhHHHHHH
Q 004369          508 ALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKMD--FEP-N---EVIWSVFIAGCRRHGNMELGFYAA  580 (758)
Q Consensus       508 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p-~---~~~~~~ll~~~~~~g~~~~a~~~~  580 (758)
                      |.+.-++..+   +.| |...-.+....+-..|++.|+.+++.+-.  .+- +   ...|-...-.+...+.++.|+++|
T Consensus       194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            9988877754   333 45566678888899999999999988762  110 0   011222222344558899999998


Q ss_pred             HHHh--ccCCCCchhHH---HHHHHhhhCCCchhHHHH
Q 004369          581 EQLL--KLKPKDCESYA---MLLDIFVSAGRWEDVAVV  613 (758)
Q Consensus       581 ~~~~--~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~  613 (758)
                      .+-+  +++.+|.....   -+--+....-.|.+-.++
T Consensus       271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~l  308 (491)
T KOG2610|consen  271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKL  308 (491)
T ss_pred             HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhh
Confidence            6543  45566654333   233333444444444433

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.30  E-value=3.1  Score=36.69  Aligned_cols=22  Identities=18%  Similarity=0.224  Sum_probs=10.5

Q ss_pred             HHHHHHhccccHHHHHHHHHHh
Q 004369          494 GALAACSNAGMVYEALGYFEMM  515 (758)
Q Consensus       494 ~ll~a~~~~g~~~~a~~~~~~~  515 (758)
                      .++..|.+.+.++++..++..+
T Consensus        74 ~~~~~c~~~~l~~~~~~l~~k~   95 (140)
T smart00299       74 KVGKLCEKAKLYEEAVELYKKD   95 (140)
T ss_pred             HHHHHHHHcCcHHHHHHHHHhh
Confidence            3444455555555555444443

>PRK15331 chaperone protein SicA; Provisional

Probab=93.25  E-value=1.9  Score=38.59  Aligned_cols=90  Identities=14%  Similarity=-0.015  Sum_probs=66.3

Q ss_pred             HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhH
Q 004369          498 ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMEL  575 (758)
Q Consensus       498 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~  575 (758)
                      -+...|++++|..+|.-+.. ++ .-+..-+..|...+-..+++++|+..|... -+.+ |+...-.....+...|+.+.
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~-~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCI-YD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHH-hC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence            44578999999999998865 22 223455677888888899999999998876 2222 44445567778888999999


Q ss_pred             HHHHHHHHhccCCCC
Q 004369          576 GFYAAEQLLKLKPKD  590 (758)
Q Consensus       576 a~~~~~~~~~~~p~~  590 (758)
                      |+..++.+++ .|.+
T Consensus       124 A~~~f~~a~~-~~~~  137 (165)
T PRK15331        124 ARQCFELVNE-RTED  137 (165)
T ss_pred             HHHHHHHHHh-Ccch
Confidence            9999998887 3443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.18  E-value=0.54  Score=42.84  Aligned_cols=90  Identities=13%  Similarity=0.131  Sum_probs=69.3

Q ss_pred             HHHHHcCCHHHHHHHHHHc-CCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC
Q 004369          533 DMFVRLGCIEEAFDFIKKM-DFEP------NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG  605 (758)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  605 (758)
                      +-+.+.|.+++|..-|.++ ..-|      ..+.|..-..+..+.+..+.|+....++++++|....+...-+.+|.+..
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e  182 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME  182 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence            3455677888887777766 2222      13345555567778899999999999999999988888888899999999


Q ss_pred             CchhHHHHHHHhhhCCC
Q 004369          606 RWEDVAVVKNLTREEKL  622 (758)
Q Consensus       606 ~~~~a~~~~~~m~~~~~  622 (758)
                      ++++|..-++.+.+...
T Consensus       183 k~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  183 KYEEALEDYKKILESDP  199 (271)
T ss_pred             hHHHHHHHHHHHHHhCc
Confidence            99999999999887443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.14  E-value=18  Score=40.79  Aligned_cols=118  Identities=7%  Similarity=0.003  Sum_probs=68.8

Q ss_pred             HHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHH----HHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 004369          112 MTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLIS----GYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSS  187 (758)
Q Consensus       112 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  187 (758)
                      ...-++++.+...++-|..+-+.-.. |...-..+..    -+-+.|++++|..-|-+-... +.|     ..+++-+-.
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd  409 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD  409 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence            34456677777777777777655332 2222222222    234678888888877665432 333     234444544


Q ss_pred             cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccC
Q 004369          188 LESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIR  237 (758)
Q Consensus       188 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~  237 (758)
                      ......-..+++.+.+.|+... .--+.|+..|.+.++.+.-.++.+...
T Consensus       410 aq~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~  458 (933)
T KOG2114|consen  410 AQRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD  458 (933)
T ss_pred             HHHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence            4455555556666677776432 333567788888887777776666554

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.12  E-value=0.99  Score=43.74  Aligned_cols=86  Identities=19%  Similarity=0.145  Sum_probs=45.3

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH-HHHHHHHHHHHHcCCHH
Q 004369          466 NHSLSHQALQLFEDMLLAGVRP--NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM-DHYMCLIDMFVRLGCIE  542 (758)
Q Consensus       466 ~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~  542 (758)
                      +.|++.+|...|...++....-  ....+-.|..++...|++++|..+|..+.++++-.|.. +.+-.|.....+.|+.+
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d  232 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD  232 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence            3455666666666666532110  01223345555666666666666666666555544442 45555555555555555


Q ss_pred             HHHHHHHHc
Q 004369          543 EAFDFIKKM  551 (758)
Q Consensus       543 ~A~~~~~~m  551 (758)
                      +|...+++.
T Consensus       233 ~A~atl~qv  241 (262)
T COG1729         233 EACATLQQV  241 (262)
T ss_pred             HHHHHHHHH
Confidence            555555554

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.09  E-value=11  Score=44.29  Aligned_cols=107  Identities=17%  Similarity=0.122  Sum_probs=55.9

Q ss_pred             hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 004369          435 KCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEM  514 (758)
Q Consensus       435 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~  514 (758)
                      +.|.+.+|..++..=.++-...|.+...-+...+.+++|.-+|+..-+         ..-.+.+|-..|+|.+|..+..+
T Consensus       920 kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~q  990 (1265)
T KOG1920|consen  920 KHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQ  990 (1265)
T ss_pred             hcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHh
Confidence            444444444444322222223344444444445666666655554321         12234566667777777777666


Q ss_pred             hhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC
Q 004369          515 MQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMD  552 (758)
Q Consensus       515 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  552 (758)
                      +..  +-.--..+-..|+..+...++.-||-++..+..
T Consensus       991 l~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen  991 LSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred             hcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence            643  221122333566777777777777777777663

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.03  E-value=5.2  Score=35.22  Aligned_cols=74  Identities=12%  Similarity=0.171  Sum_probs=33.0

Q ss_pred             ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHH
Q 004369          190 SIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKM  267 (758)
Q Consensus       190 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  267 (758)
                      .......+++.+++.+ ..+....+.|+..|++.+ ..+....+..  ..+......+++.|.+.+.++++.-++.++
T Consensus        22 ~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~   95 (140)
T smart00299       22 LLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAVELYKKD   95 (140)
T ss_pred             cHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence            3333334444443333 134445555555555442 2233333331  123333444555555555555555555554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.83  E-value=3  Score=40.92  Aligned_cols=120  Identities=14%  Similarity=0.042  Sum_probs=78.3

Q ss_pred             HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHcCChh
Q 004369          498 ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSV---FIAGCRRHGNME  574 (758)
Q Consensus       498 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~g~~~  574 (758)
                      .....|+..++...|+.....  .+-+...--.|+.+|...|+.++|..++..++.+-...-|..   =+....+..+..
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            345677778888877777652  222345566778888888888888888888854433333333   122233333333


Q ss_pred             HHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          575 LGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       575 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      +.. .+++-+..+|+|...-..|+..|...|+.++|...+=.+.++
T Consensus       221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            222 244555678988889999999999999999998876666554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.68  E-value=11  Score=37.13  Aligned_cols=154  Identities=16%  Similarity=0.121  Sum_probs=101.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcC
Q 004369          461 ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLG  539 (758)
Q Consensus       461 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g  539 (758)
                      .......|+..+|..+|+...... .-+...-..+..++...|+.+.|..++..+-.+  ..-+ ......-+..+.+..
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa  217 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAA  217 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHh
Confidence            345567788888888888887753 222445566777888899999999888877442  1111 111233456666666


Q ss_pred             CHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccC--CCCchhHHHHHHHhhhCCCchh-HHHHHH
Q 004369          540 CIEEAFDFIKKMDFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK--PKDCESYAMLLDIFVSAGRWED-VAVVKN  615 (758)
Q Consensus       540 ~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~-a~~~~~  615 (758)
                      ...+...+-.+..-.| |...--.|...+...|+.+.|.+.+-.+++.+  -.|...-..|..++...|.-+. +.+.++
T Consensus       218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR  297 (304)
T COG3118         218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR  297 (304)
T ss_pred             cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            6666666666665566 55666677888888899888888777777654  4466777788888877775443 344444


Q ss_pred             Hh
Q 004369          616 LT  617 (758)
Q Consensus       616 ~m  617 (758)
                      ++
T Consensus       298 kL  299 (304)
T COG3118         298 KL  299 (304)
T ss_pred             HH
Confidence            44

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.62  E-value=1.6  Score=46.71  Aligned_cols=130  Identities=17%  Similarity=0.251  Sum_probs=68.9

Q ss_pred             HhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004369          465 ANHSLSHQALQLFEDML-LAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEE  543 (758)
Q Consensus       465 ~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  543 (758)
                      ...|+++++.++.+.-. -..++  ..-...++.-+.+.|..+.|+++-..-..             -.++..+.|+++.
T Consensus       272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~  336 (443)
T PF04053_consen  272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDI  336 (443)
T ss_dssp             HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHH
T ss_pred             HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHH
Confidence            34566666555553111 11111  23355566666667777777655332211             2345556777777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          544 AFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       544 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      |.++.++..   +...|..|.......|+++.|++++++.        .-+..|.-.|...|+.+.-.++-+....+
T Consensus       337 A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  337 ALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            777665532   5667777777777777777777777764        34566666677777766665555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.55  E-value=15  Score=39.07  Aligned_cols=98  Identities=16%  Similarity=0.239  Sum_probs=61.1

Q ss_pred             HHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-C-CCCH--HHHHHHHHHHHH
Q 004369          494 GALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMD-F-EPNE--VIWSVFIAGCRR  569 (758)
Q Consensus       494 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~--~~~~~ll~~~~~  569 (758)
                      .+..++-+.|+.++|.+.+.+|.+++...........|+..|...+.+.++..++.+.. + -|..  ..|+..+-..+.
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa  343 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA  343 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence            34445567788888888888877644332334455667888888888888888887762 2 2332  335554444443


Q ss_pred             cCCh---------------hHHHHHHHHHhccCCCCc
Q 004369          570 HGNM---------------ELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       570 ~g~~---------------~~a~~~~~~~~~~~p~~~  591 (758)
                      .++.               ..|.++..++++.+|.-+
T Consensus       344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp  380 (539)
T PF04184_consen  344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP  380 (539)
T ss_pred             hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence            3331               235678888888887644

The molecular function of this protein is uncertain.

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=92.39  E-value=23  Score=40.11  Aligned_cols=80  Identities=13%  Similarity=0.046  Sum_probs=38.7

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcC-CCChHHHHhHHhhhHHh---cCCHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTG-FLSDVVVGTALVNMYKK---CGRIER  441 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~Li~~y~~---~g~~~~  441 (758)
                      .|+++.|++.+.+  ..+...|.+.+...+.-+.-..-.+...   ..+.... -.+...-+..||..|.+   ..+..+
T Consensus       271 tgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~  345 (613)
T PF04097_consen  271 TGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEITDPRE  345 (613)
T ss_dssp             TT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT-HHH
T ss_pred             HhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhccCHHH
Confidence            8999999998876  3445678888877776654433222211   2111111 01112446677777776   457777


Q ss_pred             HHHHHHhcC
Q 004369          442 ASRVFVEMS  450 (758)
Q Consensus       442 A~~~~~~~~  450 (758)
                      |.+.|--+.
T Consensus       346 Al~Y~~li~  354 (613)
T PF04097_consen  346 ALQYLYLIC  354 (613)
T ss_dssp             HHHHHHGGG
T ss_pred             HHHHHHHHH
Confidence            777776554

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.28  E-value=16  Score=38.13  Aligned_cols=120  Identities=16%  Similarity=0.154  Sum_probs=65.3

Q ss_pred             CHHHHHHHHHhcC---CCChhHHHHHH----HHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHH--HHhc
Q 004369          438 RIERASRVFVEMS---TRTLISWTSMI----TGFAN---HSLSHQALQLFEDMLLAGVRPNQVT----FVGALA--ACSN  501 (758)
Q Consensus       438 ~~~~A~~~~~~~~---~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~--a~~~  501 (758)
                      +-++|..+++.+.   ..|..+-|...    .+|.+   .....+-+.+-+-..+.|+.|-.+.    -+.+..  -+..
T Consensus       395 ~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys  474 (549)
T PF07079_consen  395 CDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS  474 (549)
T ss_pred             ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence            3677777777655   33444433322    12222   1223333444444455666664332    222222  1334


Q ss_pred             cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHH
Q 004369          502 AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSV  562 (758)
Q Consensus       502 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~  562 (758)
                      .|++.++.-+-..+.   .+.|++.+|..+.-.+....+++||.+++...|  |+..+|++
T Consensus       475 qgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds  530 (549)
T PF07079_consen  475 QGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS  530 (549)
T ss_pred             cccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence            677777665554443   467777777777777777777788888777764  45555544

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.24  E-value=14  Score=37.15  Aligned_cols=121  Identities=12%  Similarity=0.085  Sum_probs=55.6

Q ss_pred             CC-ChhHHHHHHHHhHhC--------CCCCCH-----HHHHHHHHHHhcccchH---HHHHHHHHHHHcCCCChHHHHhH
Q 004369          366 HN-GGTEALSIFSKLNSS--------GMKPDL-----YTFSSILTICSRLVALE---QGEQIHALTLKTGFLSDVVVGTA  428 (758)
Q Consensus       366 ~g-~~~~A~~l~~~m~~~--------g~~p~~-----~t~~~ll~a~~~~~~~~---~a~~i~~~~~~~~~~~~~~~~~~  428 (758)
                      .+ ++++|..++++..+-        ...|+.     .++..+..++...+..+   .+..+.+.+... .+..+.++-.
T Consensus        48 ~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L  126 (278)
T PF08631_consen   48 KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLL  126 (278)
T ss_pred             cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHH
Confidence            44 677776666654321        123333     24445555665555443   334444444332 1222333333


Q ss_pred             HhhhHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCC
Q 004369          429 LVNMYKKCGRIERASRVFVEMSTR---TLISWTSMITGF---ANHSLSHQALQLFEDMLLAGVRPN  488 (758)
Q Consensus       429 Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~  488 (758)
                      -+..+.+.++.+.+.+++.+|...   ....+...+..+   ..+ ....|...+.++....+.|.
T Consensus       127 ~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~  191 (278)
T PF08631_consen  127 KLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSS  191 (278)
T ss_pred             HHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCC
Confidence            344455566677777777666522   123344433333   222 23445555555544444443

It is also involved in sporulation [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=91.91  E-value=5.8  Score=39.90  Aligned_cols=221  Identities=15%  Similarity=0.097  Sum_probs=126.4

Q ss_pred             CCChhHHHHHHHHhHhC--CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHc--CCCCh---HHHHhHHhhhHHhcCC
Q 004369          366 HNGGTEALSIFSKLNSS--GMKPDLYTFSSILTICSRLVALEQGEQIHALTLKT--GFLSD---VVVGTALVNMYKKCGR  438 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--~~~~~---~~~~~~Li~~y~~~g~  438 (758)
                      ..+.++|+..+.+-...  ...--..+|..+..+.+..|..+++...-.-.++.  .....   ...|-.|...+-+.-+
T Consensus        19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~   98 (518)
T KOG1941|consen   19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE   98 (518)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666676666655432  11112235555666666666666654432111110  01111   2234444555555555


Q ss_pred             HHHHHHHHHhcC------C-C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHhccccH
Q 004369          439 IERASRVFVEMS------T-R-TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRP-----NQVTFVGALAACSNAGMV  505 (758)
Q Consensus       439 ~~~A~~~~~~~~------~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~  505 (758)
                      +.+++.+=..-.      . . .-....+|..++.-.+.++++++.|+...+-.-..     .-..+.+|-.-+.+..++
T Consensus        99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~  178 (518)
T KOG1941|consen   99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY  178 (518)
T ss_pred             hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence            555554433211      1 1 11233446667777788999999999877632111     135678888888899999


Q ss_pred             HHHHHHHHHhhh---hcCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHH
Q 004369          506 YEALGYFEMMQK---EYKIKPVMDHYMC-----LIDMFVRLGCIEEAFDFIKKM-------DFEP-NEVIWSVFIAGCRR  569 (758)
Q Consensus       506 ~~a~~~~~~~~~---~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~  569 (758)
                      ++|.-+...+.+   .+++.--..-|.+     |.-+|...|++-+|.+.-++.       |-+| -......+.+.|+.
T Consensus       179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~  258 (518)
T KOG1941|consen  179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS  258 (518)
T ss_pred             hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence            998776654432   2343332223333     334566777777776666554       4343 34457788899999


Q ss_pred             cCChhHHHHHHHHHhcc
Q 004369          570 HGNMELGFYAAEQLLKL  586 (758)
Q Consensus       570 ~g~~~~a~~~~~~~~~~  586 (758)
                      .|+.|.|..-|+.+...
T Consensus       259 ~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  259 RGDLERAFRRYEQAMGT  275 (518)
T ss_pred             cccHhHHHHHHHHHHHH
Confidence            99999999988888753

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=91.45  E-value=0.43  Score=32.16  Aligned_cols=37  Identities=22%  Similarity=0.571  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHH
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVF  563 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l  563 (758)
                      .+..+...|.+.|++++|++++++. ...| |...|..|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            4556677777777777777777776 5555 44455544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=91.40  E-value=1.6  Score=36.85  Aligned_cols=53  Identities=21%  Similarity=0.134  Sum_probs=23.2

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369          464 FANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK  517 (758)
Q Consensus       464 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  517 (758)
                      ++..|+.+.|++.|.+.+.. .+-+...|+.-..++.-.|+.++|+.-+++..+
T Consensus        53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            34444444444444444442 111233444444444444444444444444443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=90.86  E-value=2.9  Score=45.45  Aligned_cols=128  Identities=20%  Similarity=0.174  Sum_probs=89.3

Q ss_pred             HHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH-----HHHHHHHHHHH----HcCCHHHHHHHHHHc-CCCCCHHHHHH
Q 004369          493 VGALAACSNAGMVYEALGYFEMMQKEYKIKPVM-----DHYMCLIDMFV----RLGCIEEAFDFIKKM-DFEPNEVIWSV  562 (758)
Q Consensus       493 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~  562 (758)
                      ..+++...-.|+-+.|++.+....+..++.-..     -.|...+..+.    .....++|.++++.+ ..-|+...|..
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~  271 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF  271 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            445555566677777777777765533333322     12333332222    355788999999999 55688887765


Q ss_pred             HH-HHHHHcCChhHHHHHHHHHhccCCC----CchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          563 FI-AGCRRHGNMELGFYAAEQLLKLKPK----DCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       563 ll-~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      .- ..+...|+.++|.+.++++......    ....+.-+++.+.-.++|++|.+.+..+.+.
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE  334 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence            54 4467789999999999988753321    3457788999999999999999999999874

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.78  E-value=5.1  Score=42.98  Aligned_cols=157  Identities=12%  Similarity=0.061  Sum_probs=93.4

Q ss_pred             HHHhCCCchHHHHHHH--HHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCh
Q 004369          149 GYVQNSQPELAIHVFL--DMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSL  226 (758)
Q Consensus       149 ~~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~  226 (758)
                      ..+-+++++++.+...  ++.. .++  ..-...++.-+.+.|..+.|.++-..         +   ..-.+...++|++
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L  334 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNL  334 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-H
T ss_pred             HHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCH
Confidence            3445666666555543  1111 111  23355555556666666666554221         1   1233456688999


Q ss_pred             HHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhC
Q 004369          227 NSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLG  306 (758)
Q Consensus       227 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g  306 (758)
                      +.|.++.++..  +...|..|.....+.|+.+-|.+.|.+...         |..++-.+...|+.+.-.++-......|
T Consensus       335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            99998887765  566899999999999999999999988654         5566666677788777777777776665


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHccC
Q 004369          307 YASNLRVRNSIMYLYLKCGLVDEAQKLFDGM  337 (758)
Q Consensus       307 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  337 (758)
                      -      +|.-..++.-.|++++..+++.+-
T Consensus       404 ~------~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  404 D------INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             C------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            1      344455556668888877776553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=90.23  E-value=15  Score=34.34  Aligned_cols=158  Identities=13%  Similarity=0.107  Sum_probs=87.8

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 004369          454 LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLI  532 (758)
Q Consensus       454 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li  532 (758)
                      +..||-+.--+...|+++.|.+.|+...+.  .|. ..++..-.-++.-.|++.-|.+-|-..-..-.-.|=...|-.++
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~  176 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN  176 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence            356777777777788888888888887764  332 22222222244456777777766555433222233233333332


Q ss_pred             HHHHHcCCHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC-------chhHHHHHHHhhhC
Q 004369          533 DMFVRLGCIEEAFDFI-KKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD-------CESYAMLLDIFVSA  604 (758)
Q Consensus       533 ~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~  604 (758)
                      .   +.-+..+|..-+ ++. ..-|..-|...+-.+.- |+.. .+.+++++.+-..++       .++|.-|+.-|...
T Consensus       177 E---~k~dP~~A~tnL~qR~-~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~  250 (297)
T COG4785         177 E---QKLDPKQAKTNLKQRA-EKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL  250 (297)
T ss_pred             H---hhCCHHHHHHHHHHHH-HhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence            2   333556665433 333 12244556555544432 2211 122233333222221       46889999999999


Q ss_pred             CCchhHHHHHHHhhh
Q 004369          605 GRWEDVAVVKNLTRE  619 (758)
Q Consensus       605 g~~~~a~~~~~~m~~  619 (758)
                      |..++|..+++....
T Consensus       251 G~~~~A~~LfKLaia  265 (297)
T COG4785         251 GDLDEATALFKLAVA  265 (297)
T ss_pred             ccHHHHHHHHHHHHH
Confidence            999999999998865

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=90.15  E-value=16  Score=38.09  Aligned_cols=67  Identities=19%  Similarity=0.277  Sum_probs=56.0

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC----CchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369          556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK----DCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL  622 (758)
Q Consensus       556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  622 (758)
                      ...+|..+...+++.|+++.|...+.++...++.    .+.....-+......|+-.+|....+...+..+
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~  215 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL  215 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            5668999999999999999999999999986522    456777788999999999999998888776333

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK09687 putative lyase; Provisional

Probab=90.14  E-value=22  Score=35.65  Aligned_cols=74  Identities=9%  Similarity=-0.007  Sum_probs=35.6

Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCH
Q 004369          309 SNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDL  388 (758)
Q Consensus       309 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~  388 (758)
                      ++..+...-+.++.+.|+.+-.-.+.+.+..++  ..-..+.+...           .|.. +|+..+.++...  .||.
T Consensus       204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~-----------ig~~-~a~p~L~~l~~~--~~d~  267 (280)
T PRK09687        204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGE-----------LGDK-TLLPVLDTLLYK--FDDN  267 (280)
T ss_pred             CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHh-----------cCCH-hHHHHHHHHHhh--CCCh
Confidence            344445555555555555333333333333332  12234444444           5553 567777666653  3455


Q ss_pred             HHHHHHHHHH
Q 004369          389 YTFSSILTIC  398 (758)
Q Consensus       389 ~t~~~ll~a~  398 (758)
                      ..-...+.+|
T Consensus       268 ~v~~~a~~a~  277 (280)
T PRK09687        268 EIITKAIDKL  277 (280)
T ss_pred             hHHHHHHHHH
Confidence            5555555544

>PRK09687 putative lyase; Provisional

Probab=89.94  E-value=23  Score=35.54  Aligned_cols=80  Identities=9%  Similarity=-0.074  Sum_probs=33.1

Q ss_pred             hHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 004369          422 DVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHS-LSHQALQLFEDMLLAGVRPNQVTFVGALAACS  500 (758)
Q Consensus       422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~  500 (758)
                      +..+-...+.++++.|+.+....+..-+..+|...-..-+.++.+.+ ....+...+..+..   .+|..+-...+.++.
T Consensus       141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg  217 (280)
T PRK09687        141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA  217 (280)
T ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence            44444445555555555332222223333333333333333333322 12344444444442   334444444555555


Q ss_pred             cccc
Q 004369          501 NAGM  504 (758)
Q Consensus       501 ~~g~  504 (758)
                      +.|+
T Consensus       218 ~~~~  221 (280)
T PRK09687        218 LRKD  221 (280)
T ss_pred             ccCC
Confidence            5554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=89.74  E-value=28  Score=36.21  Aligned_cols=168  Identities=14%  Similarity=0.034  Sum_probs=90.0

Q ss_pred             CCChhHHHHHHHHhHhCC---CCCCHHHHHHHHHHHhc---ccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCH
Q 004369          366 HNGGTEALSIFSKLNSSG---MKPDLYTFSSILTICSR---LVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRI  439 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~---~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~  439 (758)
                      ..+++..+++++.|...-   +.-....--...-|+.+   .|+.+.|.+++..+....-.++..++..+...|-.    
T Consensus       154 iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD----  229 (374)
T PF13281_consen  154 IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD----  229 (374)
T ss_pred             hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH----
Confidence            788888888888887631   11111111122334445   77888888887775555555666666665555532    


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhccc-cHHHHHHHH---
Q 004369          440 ERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVT---FVGALAACSNAG-MVYEALGYF---  512 (758)
Q Consensus       440 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~g-~~~~a~~~~---  512 (758)
                           .|.+....|..             ..++|+..|++.-+  +.||..+   +..|+....+.. .-.+..++-   
T Consensus       230 -----~~~~s~~~d~~-------------~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l  289 (374)
T PF13281_consen  230 -----LFLESNFTDRE-------------SLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKL  289 (374)
T ss_pred             -----HHHHcCccchH-------------HHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence                 12211111111             26677777777665  3465332   333443333211 112222222   


Q ss_pred             HHhhhhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH
Q 004369          513 EMMQKEYKI---KPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNE  557 (758)
Q Consensus       513 ~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~  557 (758)
                      ..+..+.|.   ..+-..+..+..+..-.|+.++|.+..++| ...|..
T Consensus       290 ~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  290 SSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             HHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            111111122   234455678888888999999999999998 555443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=89.58  E-value=0.5  Score=29.52  Aligned_cols=31  Identities=19%  Similarity=0.195  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          559 IWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       559 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      +|..+...+...|++++|...+++.++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            5667777777888888888888888877774

...

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.37  E-value=2.5  Score=41.67  Aligned_cols=76  Identities=11%  Similarity=0.158  Sum_probs=61.1

Q ss_pred             HHHHhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 004369          423 VVVGTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLL-----AGVRPNQVTFVG  494 (758)
Q Consensus       423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~  494 (758)
                      ..++..++..+..+|+.+.+...+++...   -|...|..++.+|.+.|+...|+..|+++.+     .|+.|...+...
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            45677888999999999999999988764   3667899999999999999999999998875     577777666555


Q ss_pred             HHHH
Q 004369          495 ALAA  498 (758)
Q Consensus       495 ll~a  498 (758)
                      ...+
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            4444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=89.33  E-value=13  Score=33.21  Aligned_cols=90  Identities=11%  Similarity=0.107  Sum_probs=57.7

Q ss_pred             HHHhccccHHHHHHHHHHhhhhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChh
Q 004369          497 AACSNAGMVYEALGYFEMMQKEYKIKPVM-DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNME  574 (758)
Q Consensus       497 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~  574 (758)
                      ..-.+.++.+++..++..+.-   +.|.. +.-..-...+.+.|++.+|+.+|+++ .-.|....-..|+..|.....-.
T Consensus        18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            334566788888888888754   44542 22233445677889999999999988 33455555566776666655444


Q ss_pred             HHHHHHHHHhccCCC
Q 004369          575 LGFYAAEQLLKLKPK  589 (758)
Q Consensus       575 ~a~~~~~~~~~~~p~  589 (758)
                      .=....+++++..++
T Consensus        95 ~Wr~~A~evle~~~d  109 (160)
T PF09613_consen   95 SWRRYADEVLESGAD  109 (160)
T ss_pred             HHHHHHHHHHhcCCC
Confidence            445566667776654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=89.07  E-value=0.56  Score=29.95  Aligned_cols=25  Identities=24%  Similarity=0.147  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHh
Q 004369          560 WSVFIAGCRRHGNMELGFYAAEQLL  584 (758)
Q Consensus       560 ~~~ll~~~~~~g~~~~a~~~~~~~~  584 (758)
                      |..|...|.+.|++++|+.++++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555555555555555555555543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.94  E-value=10  Score=34.33  Aligned_cols=133  Identities=12%  Similarity=0.095  Sum_probs=85.0

Q ss_pred             HHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCch-hHHHHHHHHhhcC-CChHHHHHHHccCC
Q 004369           59 FQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDF-FVMTFLVNVYGKC-GNMEEAQKVFDNLP  136 (758)
Q Consensus        59 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~-g~~~~A~~~f~~~~  136 (758)
                      +++.+.+.+.+++|+...+..+++.+.+.|++..-.    +++..++-+|. .+...|++.-.+. .-..-|.+.+.++.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~   89 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG   89 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence            466777788899999999999999999999875443    44455555554 4444444332221 11333445555544


Q ss_pred             CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 004369          137 RINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVK  203 (758)
Q Consensus       137 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  203 (758)
                          ..+..++..+...|++-+|+++.+.....    +...-..++.+..+.+|...-..++.....
T Consensus        90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                24778888999999999999998875332    223334566666666665555555555544

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=88.93  E-value=3.4  Score=35.27  Aligned_cols=65  Identities=15%  Similarity=0.045  Sum_probs=41.0

Q ss_pred             CCHHHHHHHHHHHHHcC---ChhHHHHHHHHHhc-cCCC-CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          555 PNEVIWSVFIAGCRRHG---NMELGFYAAEQLLK-LKPK-DCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       555 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +...+--.+.++..+..   +..++..+++.+++ -.|. .......|+-.+.+.|+++.+.++.+...+
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~   99 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE   99 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence            34444445566665544   45667777887776 3343 233445566777888888888888777765

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=88.85  E-value=14  Score=31.61  Aligned_cols=81  Identities=14%  Similarity=0.144  Sum_probs=40.9

Q ss_pred             hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 004369          435 KCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEM  514 (758)
Q Consensus       435 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~  514 (758)
                      .||++......+-.+.. +..-...-+..+...|+-++-.++++++.+. -+|++.....+..||.+.|+..++.+++.+
T Consensus        68 ~C~NlKrVi~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~  145 (161)
T PF09205_consen   68 KCGNLKRVIECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE  145 (161)
T ss_dssp             G-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence            44555544444443321 2222334455666667766666666666542 355666666666777777777777777766


Q ss_pred             hhh
Q 004369          515 MQK  517 (758)
Q Consensus       515 ~~~  517 (758)
                      +.+
T Consensus       146 ACe  148 (161)
T PF09205_consen  146 ACE  148 (161)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=88.49  E-value=1.5  Score=43.43  Aligned_cols=90  Identities=14%  Similarity=0.107  Sum_probs=40.7

Q ss_pred             HHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChh
Q 004369          498 ACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNME  574 (758)
Q Consensus       498 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~  574 (758)
                      -|.++|.+++|+..|.....   +.| +...+..-..+|.+..++..|+.-.+.+ .+.- -...|.--+.+-...|+.+
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence            34555566666655554432   233 4445555555555555555444333322 1110 0111222222333345555


Q ss_pred             HHHHHHHHHhccCCCC
Q 004369          575 LGFYAAEQLLKLKPKD  590 (758)
Q Consensus       575 ~a~~~~~~~~~~~p~~  590 (758)
                      +|.+-++.+++++|++
T Consensus       183 EAKkD~E~vL~LEP~~  198 (536)
T KOG4648|consen  183 EAKKDCETVLALEPKN  198 (536)
T ss_pred             HHHHhHHHHHhhCccc
Confidence            5555566666666553

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.46  E-value=34  Score=35.60  Aligned_cols=148  Identities=10%  Similarity=-0.021  Sum_probs=72.7

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC--HHH
Q 004369          453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRP---NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV--MDH  527 (758)
Q Consensus       453 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~  527 (758)
                      ...+|..++..+.+.|+++.|...+.++...+..+   +......-....-..|+..+|...++...+. ....+  ...
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~  223 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence            34567777777888888888888887777643111   1122222233344556777777777666551 11111  111


Q ss_pred             HHHHHHHHHHcCCHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHc------CChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 004369          528 YMCLIDMFVRLGCIEEAFDF-IKKMDFEPNEVIWSVFIAGCRRH------GNMELGFYAAEQLLKLKPKDCESYAMLLDI  600 (758)
Q Consensus       528 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  600 (758)
                      ...+...+..  ..+..... ........-...+..+..-+...      ++.+.+...++.+.++.|.....+..++..
T Consensus       224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            1111100000  00000000 00000000011222333333333      778888999999999999887788777776


Q ss_pred             hhh
Q 004369          601 FVS  603 (758)
Q Consensus       601 ~~~  603 (758)
                      +.+
T Consensus       302 ~~~  304 (352)
T PF02259_consen  302 NDK  304 (352)
T ss_pred             HHH
Confidence            643

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=88.14  E-value=7.3  Score=39.30  Aligned_cols=64  Identities=17%  Similarity=0.219  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHhccc--cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 004369          470 SHQALQLFEDMLLAGVRPN-Q-VTFVGALAACSNAG--MVYEALGYFEMMQKEYKIKPVMDHYMCLIDM  534 (758)
Q Consensus       470 ~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~  534 (758)
                      .+.+..+|+.+.+.|+..+ . .....+|.-+....  .+..+.++++.+.+. |+++...+|..+.-+
T Consensus       159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL  226 (297)
T ss_pred             HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence            3566777888888787665 3 23333443332222  245778888888774 888888887765543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=87.84  E-value=1.3  Score=28.24  Aligned_cols=26  Identities=12%  Similarity=0.232  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004369          456 SWTSMITGFANHSLSHQALQLFEDML  481 (758)
Q Consensus       456 ~~~~li~~~~~~g~~~~A~~~~~~m~  481 (758)
                      +|+.|...|.+.|++++|+++|++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35667777777777777777777744

>PRK10941 hypothetical protein; Provisional

Probab=87.55  E-value=3.3  Score=40.96  Aligned_cols=60  Identities=20%  Similarity=0.096  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          560 WSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       560 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      .+.|-.++.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..=++...+
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~  243 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE  243 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            567778899999999999999999999999999899999999999999999998887765

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=87.05  E-value=1.1e+02  Score=39.64  Aligned_cols=64  Identities=11%  Similarity=-0.015  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369          557 EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL  622 (758)
Q Consensus       557 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  622 (758)
                      ..+|......++..|.++.|..+.-++.+..+  +..+...+...+..|+-..|..+.+...+...
T Consensus      1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence            45799999999999999999999888888774  47899999999999999999999998876543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=87.02  E-value=61  Score=36.88  Aligned_cols=49  Identities=12%  Similarity=0.188  Sum_probs=28.8

Q ss_pred             cCChhHHHHHHHHHhccC---CCC-chhH-----HHHHHHhhhCCCchhHHHHHHHhh
Q 004369          570 HGNMELGFYAAEQLLKLK---PKD-CESY-----AMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       570 ~g~~~~a~~~~~~~~~~~---p~~-~~~~-----~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                      .|+.++..........+-   |+. ...|     ..+.+.|...|+.++|...+....
T Consensus       547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~  604 (608)
T PF10345_consen  547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD  604 (608)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            677776655555554432   221 1222     245556778888888888776654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=86.87  E-value=3.4  Score=29.14  Aligned_cols=51  Identities=14%  Similarity=0.111  Sum_probs=37.8

Q ss_pred             hHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 004369          593 SYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGY  669 (758)
Q Consensus       593 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~  669 (758)
                      ....|+-++.+.|++++|.+..+.+.+                          ..|+..+.......+.++|++.|.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl   53 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL   53 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence            356678889999999999999999886                          456666666556667778887773

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.81  E-value=28  Score=33.08  Aligned_cols=62  Identities=8%  Similarity=0.015  Sum_probs=35.3

Q ss_pred             HHHHHHHHc-CCHHHHHHHHHHc-----CCCCCHHHHHHHHHH---HHHcCChhHHHHHHHHHhccCCCCc
Q 004369          530 CLIDMFVRL-GCIEEAFDFIKKM-----DFEPNEVIWSVFIAG---CRRHGNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       530 ~li~~~~~~-g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~~  591 (758)
                      .+.+.|-.. .++++|+..++..     +-+.+...-..++..   -...+++.+|..+++++....-+++
T Consensus       118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~  188 (288)
T KOG1586|consen  118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN  188 (288)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            344444433 4566666666665     222222222333332   3456789999999999987655543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=85.73  E-value=18  Score=33.39  Aligned_cols=56  Identities=14%  Similarity=0.062  Sum_probs=26.2

Q ss_pred             HHhHHhhhHHhcCCHHHHHHHHHhcCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004369          425 VGTALVNMYKKCGRIERASRVFVEMSTRTL------ISWTSMITGFANHSLSHQALQLFEDM  480 (758)
Q Consensus       425 ~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m  480 (758)
                      .+..+.+.|.+.|+++.|.+.|.++.+..+      ..+-.+|......|++..+.....+.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            344555555555555555555555443211      23334444444444444444444443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=85.60  E-value=6.6  Score=40.95  Aligned_cols=120  Identities=18%  Similarity=0.166  Sum_probs=69.3

Q ss_pred             hcCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004369          466 NHSLSHQALQ-LFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA  544 (758)
Q Consensus       466 ~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A  544 (758)
                      ..|+...|-+ ++.-+....-.|+.+...+.|  ..+.|.++.+.+.+....+  -+.....+..+++...-+.|++++|
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence            3566555543 444444444456655555444  4567777777777766644  3334455666777777777777777


Q ss_pred             HHHHHHc-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          545 FDFIKKM-DFE-PNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       545 ~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      ...-..| +-+ -+..+...-...-...|-++++...+++++.++|+
T Consensus       377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence            7776666 211 13333333334445556667777777777776654

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=84.93  E-value=28  Score=31.53  Aligned_cols=134  Identities=9%  Similarity=0.074  Sum_probs=75.5

Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHhhc-CChHHHHHHHhccC
Q 004369          160 IHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTS-VGNSLCSLYSTC-GSLNSAIKAFNRIR  237 (758)
Q Consensus       160 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~Li~~y~~~-g~~~~A~~~f~~~~  237 (758)
                      ++.++.+.+.++.|+...+..++..+.+.|....-.+    +++.++-+|.. +.-.|++.-.+. .-..-|...+.++.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~   89 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG   89 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence            3455556667777887788888888877777554433    33344444433 333333332111 01222333343332


Q ss_pred             CCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHh
Q 004369          238 EKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKL  305 (758)
Q Consensus       238 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  305 (758)
                          ..+..++..+...|++-+|+++.+....    .+......++.+..+.+|...--.++......
T Consensus        90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   90 ----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             ----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                2566777788889999999888877532    22233345666666666666655555555443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.85  E-value=33  Score=31.76  Aligned_cols=90  Identities=11%  Similarity=0.001  Sum_probs=59.3

Q ss_pred             HHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH
Q 004369          496 LAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMC-----LIDMFVRLGCIEEAFDFIKKMDFE-PNEVIWSVFIAGCRR  569 (758)
Q Consensus       496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~  569 (758)
                      ...+...+++++|...++.....    |.-+.+..     |.......|.+|+|++.++...-+ -.......-.+.+..
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~  171 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA  171 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence            34566778888888887766531    32333333     345677888899999888875211 122223334567788


Q ss_pred             cCChhHHHHHHHHHhccCCC
Q 004369          570 HGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       570 ~g~~~~a~~~~~~~~~~~p~  589 (758)
                      .|+.++|...|+++++.+++
T Consensus       172 kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         172 KGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             cCchHHHHHHHHHHHHccCC
Confidence            89999999999999888754

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=84.81  E-value=8.4  Score=38.86  Aligned_cols=61  Identities=16%  Similarity=0.100  Sum_probs=36.4

Q ss_pred             hHHHHHHHHhHhCCCCCC-H-HHHHHHHHHHhcccc--hHHHHHHHHHHHHcCCCChHHHHhHHh
Q 004369          370 TEALSIFSKLNSSGMKPD-L-YTFSSILTICSRLVA--LEQGEQIHALTLKTGFLSDVVVGTALV  430 (758)
Q Consensus       370 ~~A~~l~~~m~~~g~~p~-~-~t~~~ll~a~~~~~~--~~~a~~i~~~~~~~~~~~~~~~~~~Li  430 (758)
                      +.+...|+.+...|+..+ . ...+.+|..+.....  ...+.++++.+.+.|++.....|..+.
T Consensus       160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence            456667777777776653 3 344444444433322  346677778888888777666665443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.42  E-value=2.4  Score=26.35  Aligned_cols=27  Identities=11%  Similarity=0.209  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004369          456 SWTSMITGFANHSLSHQALQLFEDMLL  482 (758)
Q Consensus       456 ~~~~li~~~~~~g~~~~A~~~~~~m~~  482 (758)
                      +|..+...|...|++++|+..|++.++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            566677777777777777777777766

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=84.41  E-value=11  Score=30.33  Aligned_cols=87  Identities=14%  Similarity=0.101  Sum_probs=62.1

Q ss_pred             CcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 004369           89 SLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLE  168 (758)
Q Consensus        89 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  168 (758)
                      ..++|..|-+.+...+ .....+.-.-+..+...|++++|..+.+.++.||...|-+|-..  +.|..+++..-+.+|..
T Consensus        20 cHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~   96 (115)
T TIGR02508        20 CHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA   96 (115)
T ss_pred             HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence            4677888887776554 22333444445677889999999999999999999999888764  66777777777777777


Q ss_pred             cCCCCChhhHH
Q 004369          169 AGNYPTNVTLG  179 (758)
Q Consensus       169 ~g~~p~~~t~~  179 (758)
                      .| .|...+|.
T Consensus        97 sg-~p~lq~Fa  106 (115)
T TIGR02508        97 SG-DPRLQTFV  106 (115)
T ss_pred             CC-CHHHHHHH
Confidence            65 44444443

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=83.81  E-value=3.8  Score=36.48  Aligned_cols=70  Identities=16%  Similarity=0.058  Sum_probs=32.8

Q ss_pred             HcCCHHHHHHHHHHc-CCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369          537 RLGCIEEAFDFIKKM-DFEPNEVIWSV-FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGR  606 (758)
Q Consensus       537 ~~g~~~~A~~~~~~m-~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  606 (758)
                      +.++.+++..++..+ -.+|....... -..-+...|++.+|.++++.+.+-.|..+..-..++.++...|+
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            444555555555555 33343222211 12233445555555555555555555544444444444444443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=83.48  E-value=16  Score=33.60  Aligned_cols=95  Identities=11%  Similarity=0.035  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHhhhhcCC--CCCH----H
Q 004369          455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ--VTFVGALAACSNAGMVYEALGYFEMMQKEYKI--KPVM----D  526 (758)
Q Consensus       455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~----~  526 (758)
                      ..+..+..-|++.|+.++|++.|.++.+....|..  ..+..++..+...+++..+..+..++......  +++.    .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            36777888999999999999999999987666664  35677888888899999998888877652111  1121    2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKM  551 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m  551 (758)
                      .|..|.  +...+++.+|-+.|-..
T Consensus       117 ~~~gL~--~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  117 VYEGLA--NLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHH--HHHhchHHHHHHHHHcc
Confidence            233332  33568999998888776

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.31  E-value=17  Score=32.76  Aligned_cols=119  Identities=13%  Similarity=0.105  Sum_probs=64.8

Q ss_pred             hcCChHHHHHHHhccCCCCcchHHHHH-----HHHhhCCChhhHHHHHHHHHHCCCCCChh-hHHHHHHH--HcccCChH
Q 004369          222 TCGSLNSAIKAFNRIREKNVMSWTTVI-----GACGENGEAVQGLRFFSKMLSEGIQPNEF-TLTSISSV--CGTMLSLR  293 (758)
Q Consensus       222 ~~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~--~~~~~~~~  293 (758)
                      +.+..++|+.-|..+...+.-+|-.|.     ...++.|+...|+..|.+.-.....|-.. -...+=.+  +...|.++
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            345556666666665554444444332     23455666666666666665543333332 11111111  23345555


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC
Q 004369          294 VGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHV  340 (758)
Q Consensus       294 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  340 (758)
                      ......+-+-..+-+.-.....+|.-+-.|.|++.+|.+.|..+.+.
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            55444444433333333445566777778899999999999988663

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.51  E-value=48  Score=31.87  Aligned_cols=78  Identities=13%  Similarity=0.121  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC------CchhHHHHHHH
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK------DCESYAMLLDI  600 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~  600 (758)
                      .|+--..+|..+|..+-|-..+++..             -.....+.++|++++++.+.+-..      -...|...+++
T Consensus        93 l~eKAs~lY~E~GspdtAAmaleKAa-------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~  159 (308)
T KOG1585|consen   93 LYEKASELYVECGSPDTAAMALEKAA-------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV  159 (308)
T ss_pred             HHHHHHHHHHHhCCcchHHHHHHHHH-------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence            34444445555555554444444430             012344566777777777654221      12356667888


Q ss_pred             hhhCCCchhHHHHHHHh
Q 004369          601 FVSAGRWEDVAVVKNLT  617 (758)
Q Consensus       601 ~~~~g~~~~a~~~~~~m  617 (758)
                      |.+..+++||...+.+-
T Consensus       160 lVrl~kf~Eaa~a~lKe  176 (308)
T KOG1585|consen  160 LVRLEKFTEAATAFLKE  176 (308)
T ss_pred             hhhhHHhhHHHHHHHHh
Confidence            88888999888776653

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.19  E-value=6.4  Score=34.48  Aligned_cols=51  Identities=12%  Similarity=0.034  Sum_probs=34.6

Q ss_pred             cCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          570 HGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       570 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      .++.++++.++..+--+.|+.+..-..-++.+...|+|+||.++++...+.
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            566666666666666666776666666667777777777777776666554

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=81.93  E-value=9.6  Score=30.50  Aligned_cols=63  Identities=13%  Similarity=0.177  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 004369          469 LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLID  533 (758)
Q Consensus       469 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~  533 (758)
                      +.-++.+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+  .+...|..+++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence            4456666677777778999999999999999999999999999998875333  34556776664

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=81.84  E-value=3.3  Score=29.19  Aligned_cols=33  Identities=18%  Similarity=0.316  Sum_probs=26.5

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369          562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDCESY  594 (758)
Q Consensus       562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  594 (758)
                      .+.-++.+.|+++.|.+..+.+++++|+|..+-
T Consensus         6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            466788999999999999999999999986543

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.42  E-value=55  Score=31.81  Aligned_cols=258  Identities=15%  Similarity=0.141  Sum_probs=143.8

Q ss_pred             CCHHHHHHHHccCCC--CCee-----echhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHh---CCC--CCCHHHHH
Q 004369          325 GLVDEAQKLFDGMSH--VNLV-----TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNS---SGM--KPDLYTFS  392 (758)
Q Consensus       325 g~~~~A~~~~~~m~~--~~~~-----~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~---~g~--~p~~~t~~  392 (758)
                      .+.++|..-|.++.+  +.-.     +.-.||..+.+           .+++++.++.+.+|..   +.+  .-...+.+
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~-----------l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN  109 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFR-----------LGNYKEMMERYKQLLTYIKSAVTRNYSEKSIN  109 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhc-----------cccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            345566666655433  1111     22345666677           7888888888887753   111  22445677


Q ss_pred             HHHHHHhcccchHHHHHHHHHHHHc-----CCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC--------CC------
Q 004369          393 SILTICSRLVALEQGEQIHALTLKT-----GFLSDVVVGTALVNMYKKCGRIERASRVFVEMST--------RT------  453 (758)
Q Consensus       393 ~ll~a~~~~~~~~~a~~i~~~~~~~-----~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~--------~~------  453 (758)
                      +++.-.+...+.+.-..+++.-.+.     +-..-..+-+.|...|...|.+.+-.+++.++..        .|      
T Consensus       110 ~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ  189 (440)
T KOG1464|consen  110 SILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ  189 (440)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch
Confidence            7777666666666655555433221     1111223445677778888888888888877651        11      


Q ss_pred             -hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-----ccccHHHHHHHHHHhhhhcCC--CCC-
Q 004369          454 -LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACS-----NAGMVYEALGYFEMMQKEYKI--KPV-  524 (758)
Q Consensus       454 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~--~p~-  524 (758)
                       ...|..=|..|....+-.+-..+|++...-.-.........+++-|.     +.|.+++|..-|-++-+.|.-  .|. 
T Consensus       190 LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR  269 (440)
T KOG1464|consen  190 LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR  269 (440)
T ss_pred             hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch
Confidence             24677778888888888888888887765322222333455666664     567888876544444443322  222 


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHH--Hc-CC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369          525 --MDHYMCLIDMFVRLGCIEEAFDFIK--KM-DF--EPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML  597 (758)
Q Consensus       525 --~~~~~~li~~~~~~g~~~~A~~~~~--~m-~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  597 (758)
                        .--|-.|.+++.+.|-     .-|+  ++ |.  .|.......|+.+|... +..+-+++++.-...--+||....++
T Consensus       270 ttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~~~~~~IM~DpFIReh~  343 (440)
T KOG1464|consen  270 TTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERILKSNRSNIMDDPFIREHI  343 (440)
T ss_pred             hHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHHhhhccccccHHHHHHH
Confidence              2336667778877762     1111  11 33  34556678888888654 44433333332222223455555444


Q ss_pred             HH
Q 004369          598 LD  599 (758)
Q Consensus       598 ~~  599 (758)
                      -+
T Consensus       344 Ed  345 (440)
T KOG1464|consen  344 ED  345 (440)
T ss_pred             HH
Confidence            33

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=81.34  E-value=27  Score=28.24  Aligned_cols=86  Identities=15%  Similarity=0.171  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004369          405 EQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAG  484 (758)
Q Consensus       405 ~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  484 (758)
                      ++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+....||+..|-+|-.  .+.|..+++..-+.+|..+|
T Consensus        22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg   98 (115)
T TIGR02508        22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG   98 (115)
T ss_pred             HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence            4444444444443311 22222223345667899999999999998999999987754  45677777777777777765


Q ss_pred             CCCCHHHHHH
Q 004369          485 VRPNQVTFVG  494 (758)
Q Consensus       485 ~~p~~~t~~~  494 (758)
                       .|...+|..
T Consensus        99 -~p~lq~Faa  107 (115)
T TIGR02508        99 -DPRLQTFVA  107 (115)
T ss_pred             -CHHHHHHHH
Confidence             555555543

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.33  E-value=7.9  Score=38.24  Aligned_cols=102  Identities=16%  Similarity=0.199  Sum_probs=70.6

Q ss_pred             hCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCC-CCc-----chHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChh
Q 004369          103 TGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR-INV-----VSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNV  176 (758)
Q Consensus       103 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  176 (758)
                      .|.+....+...++..-....+++++...+-++.. ++.     .+-.+.++. +-.-++++++.++..=++.|+.||.+
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence            34445555556666666667788888887766552 111     111222332 23447889999998888899999999


Q ss_pred             hHHHHHHHhcccCChHHHHHHHHHHHHhC
Q 004369          177 TLGTALTACSSLESIRLGKQIHAYVVKYQ  205 (758)
Q Consensus       177 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g  205 (758)
                      ++..+|..+.+.++...|.++.-.|+...
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            99999999999999888888877776543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=81.21  E-value=6.3  Score=38.97  Aligned_cols=57  Identities=18%  Similarity=0.256  Sum_probs=27.9

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369          562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                      .++..+...|+.+.+...++++++.+|-+...|..|..+|.+.|+...|+..++.+.
T Consensus       158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         158 KLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            344444444444444555555555555444455555555555555555555444443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=80.83  E-value=61  Score=32.02  Aligned_cols=59  Identities=12%  Similarity=0.039  Sum_probs=51.8

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          561 SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       561 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +.....|...|.+.+|.++.++++.++|-+...+-.|.+.|+..|+--+|.+-++.+.+
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            34456788999999999999999999999999999999999999998888887777754

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=80.53  E-value=81  Score=33.21  Aligned_cols=133  Identities=15%  Similarity=0.171  Sum_probs=98.7

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHH-HHHH
Q 004369          454 LISWTSMITGFANHSLSHQALQLFEDMLLAG-VRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDH-YMCL  531 (758)
Q Consensus       454 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l  531 (758)
                      ...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+..-|..+|+.-...+   ||... -...
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky  472 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY  472 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence            3567777777777777888899999998888 6677778888886554 577888888888765533   33333 3456


Q ss_pred             HHHHHHcCCHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369          532 IDMFVRLGCIEEAFDFIKKM--DFEPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD  590 (758)
Q Consensus       532 i~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  590 (758)
                      ++-+.+-++-+.|..+|+..  .+..+  ..+|..++.--..-|++..+..+-+++.+.-|..
T Consensus       473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe  535 (660)
T COG5107         473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE  535 (660)
T ss_pred             HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence            67778888888899998865  23333  5678888888888888888888888888888874

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=80.43  E-value=2.5  Score=26.11  Aligned_cols=28  Identities=18%  Similarity=0.242  Sum_probs=24.4

Q ss_pred             hhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          592 ESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       592 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ..+..++.+|...|++++|.+.+++..+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            5688999999999999999999998875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=80.05  E-value=84  Score=33.11  Aligned_cols=143  Identities=17%  Similarity=0.237  Sum_probs=97.9

Q ss_pred             HHHHhHHhhhHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 004369          423 VVVGTALVNMYKKCGRIERASRVFVEMS-----TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTF-VGAL  496 (758)
Q Consensus       423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll  496 (758)
                      ..++..+++.-.+..-++.|..+|-+..     .+++..++++|.-++. |+..-|..+|+--...  -||...| .-.+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            4556667777777777888888887765     3466778888876664 6677788888765442  4554333 3445


Q ss_pred             HHHhccccHHHHHHHHHHhhhhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHc
Q 004369          497 AACSNAGMVYEALGYFEMMQKEYKIKPV--MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRH  570 (758)
Q Consensus       497 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~  570 (758)
                      .-+...++-+.|..+|+....+  +..+  ...|..+|+-=..-|++..+..+=++| ..-|...+...+.+-|...
T Consensus       474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik  548 (660)
T COG5107         474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK  548 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence            5667788888999999976652  3333  568899999888999999888887777 4445555555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	758
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-11
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-07
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-04
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	5e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 64.5 bits (155), Expect = 9e-11
 Identities = 22/193 (11%), Positives = 58/193 (30%), Gaps = 11/193 (5%)

Query: 372 ALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVN 431
           A  +      +   P     + +L      ++L+  +       +           A   
Sbjct: 76  AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135

Query: 432 MYKKCGRIERASRVFVEMSTR-------TLISWTSMITGFANHSLSHQALQLFEDMLLAG 484
                 ++  A  + V    +       TL  + +++ G+A      + + +   +  AG
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195

Query: 485 VRPNQVTFVGALAACSNAGMVYEALGYF--EMMQKEYKIKPVMDHYMCLIDMFVRLGCIE 542
           + P+ +++  AL            +     +M Q+  K++ +      L+    R   ++
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF--TAVLLSEEDRATVLK 253

Query: 543 EAFDFIKKMDFEP 555
                       P
Sbjct: 254 AVHKVKPTFSLPP 266

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 53.7 bits (127), Expect = 2e-07
 Identities = 26/193 (13%), Positives = 50/193 (25%), Gaps = 13/193 (6%)

Query: 2   ASVPWAAAAACTLETKSRQPSSSLATLKDKNHTVSYQRSGSKLIQLNGNSEPVRSLGFQE 61
               WA      LE   R     +  LK K            L +       + S     
Sbjct: 22  PCGRWAKI----LEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAG 77

Query: 62  ALSVLTEGPKVQTS--SYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVY 119
            L   T              LLQE   + SL   +       +         +       
Sbjct: 78  CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137

Query: 120 GKCGNMEEAQKVFDNLPR-------INVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNY 172
                +  A  +             + +  + +++ G+ +    +  ++V   + +AG  
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197

Query: 173 PTNVTLGTALTAC 185
           P  ++   AL   
Sbjct: 198 PDLLSYAAALQCM 210

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 44.8 bits (104), Expect = 1e-04
 Identities = 12/102 (11%), Positives = 31/102 (30%), Gaps = 5/102 (4%)

Query: 478 EDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMM--QKEYKIKPVMDHYMCLIDMF 535
                A +   Q   +     C     +  A     +   Q++ +    +D Y  ++  +
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175

Query: 536 VRLGCIEEAFDFIKKMD---FEPNEVIWSVFIAGCRRHGNME 574
            R G  +E    +  +      P+ + ++  +    R     
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 41.7 bits (96), Expect = 9e-04
 Identities = 17/190 (8%), Positives = 44/190 (23%), Gaps = 8/190 (4%)

Query: 158 LAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLC 217
           +A  +     +A   P    L   L       S+ + +       + Q         +  
Sbjct: 75  MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134

Query: 218 SLYSTCGSLNSAIKAFNRIREK-------NVMSWTTVIGACGENGEAVQGLRFFSKMLSE 270
                   L  A         +        +  +  V+      G   + +     +   
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194

Query: 271 GIQPNEFTLTSISSVCGTM-LSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDE 329
           G+ P+  +  +     G          +      + G          ++    +  ++  
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254

Query: 330 AQKLFDGMSH 339
             K+    S 
Sbjct: 255 VHKVKPTFSL 264

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 2e-10
 Identities = 100/653 (15%), Positives = 186/653 (28%), Gaps = 165/653 (25%)

Query: 85  VNRKSLSNAEIIHAH---IVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVF---DNLPRI 138
                    +I+       V     +D  V     ++  K    EE   +    D +   
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKD--VQDMPKSILSK----EEIDHIIMSKDAVSGT 64

Query: 139 NVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIH 198
             + WT L       S+ E  +  F++ +   NY     L + +      E  +      
Sbjct: 65  LRLFWTLL-------SKQEEMVQKFVEEVLRINYK---FLMSPIKT----EQRQPSMMTR 110

Query: 199 AYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREK----NVMSWTTVIG--ACG 252
            Y+   +  D     N + + Y+      S ++ + ++R+            + G    G
Sbjct: 111 MYI---EQRDRLYNDNQVFAKYNV-----SRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 253 EN---GEAVQGLRFFSKM------LSEG-IQPNEFTLTSISSVCGTMLSLRVGAQVHSLG 302
           +     +     +   KM      L+       E  L  +  +   +         HS  
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 303 IKLGYAS-NLRVRNSIMY-LYLKCGLV-DEAQ-----KLFDGMSHVNLVTWNAMIAGHAQ 354
           IKL   S    +R  +    Y  C LV    Q       F+    + L T    +     
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 355 MMDLAKDDLSAHNGG---TEALSIFSK-LNSSGMKP-DLYTFSSILTICSRLVALEQGEQ 409
                   L  H+      E  S+  K L+    +P DL     +LT   R +++   E 
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLD---CRPQDLP--REVLTTNPRRLSI-IAES 336

Query: 410 IHALTLKTGFLSDV-------VVGTALVN--------MYKKCGRIERASRVF---VEMST 451
           I            V       ++ ++L          M+ +         VF     + T
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-------VFPPSAHIPT 389

Query: 452 RTL-ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTF------VGALAACSNAGM 504
             L + W  +I      S     +       L   +P + T       +       N   
Sbjct: 390 ILLSLIWFDVIK-----SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 505 V-------YEALGYFEMMQKEYKIKPVMDHY--------MCLIDMFVRLGCIEEAFDFIK 549
           +       Y     F+    +  I P +D Y        +  I+         E     +
Sbjct: 445 LHRSIVDHYNIPKTFD---SDDLIPPYLDQYFYSHIGHHLKNIEH-------PERMTLFR 494

Query: 550 K--MDFEPNEVIWSVFIAGCRRHGNMELGFYAA-----EQLLKLKP---KDCESYAMLLD 599
              +DF         F+    RH +       +     +QL   KP    +   Y  L++
Sbjct: 495 MVFLDFR--------FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546

Query: 600 IFVSAGRWEDVAVVKNLTR-EEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSA 651
                      A++  L + EE L  +     +RI         ++ +  ++ 
Sbjct: 547 -----------AILDFLPKIEENLICSKYTDLLRIA----LMAEDEAIFEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 9e-09
 Identities = 40/295 (13%), Positives = 91/295 (30%), Gaps = 74/295 (25%)

Query: 512 FEMMQKEYKIKPVMDHYMCLIDMFVR-LGC--IEEA---------FDFIKKMDFEPNEVI 559
           FE  + +Y+ K ++  +    D FV    C  +++           D I       + V 
Sbjct: 9   FETGEHQYQYKDILSVFE---DAFVDNFDCKDVQDMPKSILSKEEIDHIIM---SKDAVS 62

Query: 560 WSVFIAGCRRHGNMELGFYAAEQLLK-----LKPK---DCESYAMLLDIFVSAGR---WE 608
            ++ +         E+     E++L+     L      +    +M+  +++   R   + 
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYN 121

Query: 609 DVAVVK--NLTREEKLSETDDWSWIRIKDKVYSFKPNDG--LH-----PQSAEIFKVL-D 658
           D  V    N++R +   +        ++  +   +P     +       ++     V   
Sbjct: 122 DNQVFAKYNVSRLQPYLK--------LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 659 ELVEKAKCFG-----YKQQESFELTDEESASVYH---SEKLAIAFGLLNTPI-VSPILVV 709
             V+    F       K   S E   E    + +       + +    N  + +  I   
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 710 KSTTMCRDCHNFIKIITSLTAREII---VRDSKRLHKFVNGHC----TCRDFGVS 757
               +    +        L    ++   V+++K  + F N  C    T R   V+
Sbjct: 234 LRRLLKSKPYE-----NCL----LVLLNVQNAKAWNAF-NLSCKILLTTRFKQVT 278

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 42.2 bits (98), Expect = 5e-04
 Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 14/184 (7%)

Query: 428 ALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQ----ALQLFEDMLLA 483
           A  +  +   + E+   ++  +     I  T +   +   +   +       +F+     
Sbjct: 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385

Query: 484 GVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEE 543
               + V    AL     +     A   FE+  K+Y   P     +  ID    L     
Sbjct: 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY--VLAYIDYLSHLNEDNN 443

Query: 544 AFDFIKK------MDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE--SYA 595
                ++      +  E +  IW+ F+A     G++       ++      ++ E    A
Sbjct: 444 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETA 503

Query: 596 MLLD 599
           +L+D
Sbjct: 504 LLVD 507

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	758
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.9
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.9
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.88
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.86
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.85
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.81
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.79
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.77
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.74
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.74
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.73
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.72
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.71
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.7
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.69
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.69
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.69
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.68
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.68
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.67
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.67
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.66
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.66
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.65
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.63
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.59
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.59
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.57
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.54
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.52
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.48
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.48
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.48
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.47
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.46
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.46
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.45
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.44
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.43
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.43
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.43
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.42
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.41
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.4
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.39
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.38
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.38
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.36
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.35
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.35
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.35
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.34
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.34
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.32
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.32
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.28
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.25
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.25
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.24
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.22
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.22
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.21
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.21
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.2
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.19
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.19
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.19
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.18
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.14
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.12
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.09
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.09
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.06
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.03
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.99
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.98
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.96
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.95
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.94
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.93
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.92
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.91
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.91
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.9
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.89
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.87
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.86
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.85
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.82
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.82
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.78
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.77
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.76
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.75
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.74
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.74
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.71
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.7
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.7
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.69
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.67
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.66
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.65
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.64
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.64
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.63
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.63
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.62
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.6
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.57
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.55
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.55
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.55
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.55
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.54
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.54
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.5
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.5
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.5
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.5
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.49
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.47
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.47
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.46
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.46
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.43
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.42
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.4
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.39
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.39
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.38
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.36
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.36
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.35
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.35
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.34
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.34
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.33
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.33
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.32
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.32
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.32
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.31
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.3
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.3
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.29
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.29
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.29
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.27
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.27
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.27
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.23
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.2
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.19
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.19
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.18
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.15
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.15
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.13
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.13
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.12
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.07
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.05
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.03
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.02
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.01
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.0
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.99
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.99
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.99
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.99
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.97
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.96
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.94
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.93
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.92
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.89
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.88
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.86
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.84
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.82
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.75
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.74
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.72
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.72
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.51
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.42
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.38
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.32
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.28
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.28
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.26
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.22
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.2
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.08
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.05
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.0
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.98
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.98
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.96
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.84
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.73
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.68
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.24
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.19
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.17
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.17
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.09
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.97
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.94
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.65
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.52
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.35
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.93
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	94.76
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.46
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.41
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.2
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.99
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	92.94
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.83
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.4
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	92.07
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	89.92
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	89.45
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	87.68
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	87.17
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	85.95
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	85.21
2p58_C	116	Putative type III secretion protein YSCG; type III	85.21
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	84.89
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	84.42
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	84.32
2p58_C	116	Putative type III secretion protein YSCG; type III	83.8
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	83.3
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	81.85
2qx5_A	661	Nucleoporin NIC96; mRNA transport, nuclear pore co	80.81
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	80.8
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	80.69

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-41  Score=385.08  Aligned_cols=480  Identities=9%  Similarity=-0.054  Sum_probs=401.9

Q ss_pred             hhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHH
Q 004369          119 YGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIH  198 (758)
Q Consensus       119 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  198 (758)
                      +.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|..  ..|+..++..+..+|...|+++.|..++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~  140 (597)
T 2xpi_A           63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL  140 (597)
T ss_dssp             -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence            45677788888999999988999999999999999999999999999985  4688899999999999999999999999


Q ss_pred             HHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCC-------------------CcchHHHHHHHHhhCCChhh
Q 004369          199 AYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREK-------------------NVMSWTTVIGACGENGEAVQ  259 (758)
Q Consensus       199 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~~~  259 (758)
                      +.+...  +++..+++.++.+|.++|++++|.++|+++...                   ++.+|+.++.+|.+.|++++
T Consensus       141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  218 (597)
T 2xpi_A          141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR  218 (597)
T ss_dssp             HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence            988643  678899999999999999999999999965433                   37899999999999999999


Q ss_pred             HHHHHHHHHHCCCCCChh-hHHHHHHHHcccCChHH--HHHH-HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHc
Q 004369          260 GLRFFSKMLSEGIQPNEF-TLTSISSVCGTMLSLRV--GAQV-HSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFD  335 (758)
Q Consensus       260 A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  335 (758)
                      |+++|++|.+.+  |+.. .+..+...+...+..+.  +..+ +..+...+......+++.++.+|.+.|++++|.++|+
T Consensus       219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  296 (597)
T 2xpi_A          219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS  296 (597)
T ss_dssp             HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence            999999998854  5443 33333333322222111  1111 4445555555566778888999999999999999999


Q ss_pred             cCCC--CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHH
Q 004369          336 GMSH--VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHAL  413 (758)
Q Consensus       336 ~m~~--~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~  413 (758)
                      ++.+  ++..+|+.++.+|.+           .|++++|+++|++|.+.+ +.+..++..++.++...|++++|.+++..
T Consensus       297 ~~~~~~~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  364 (597)
T 2xpi_A          297 SINGLEKSSDLLLCKADTLFV-----------RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISND  364 (597)
T ss_dssp             TSTTGGGCHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HhhcCCchHHHHHHHHHHHHH-----------hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9987  888999999999999           999999999999998764 33778899999999999999999999999


Q ss_pred             HHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004369          414 TLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV  490 (758)
Q Consensus       414 ~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  490 (758)
                      +.+.. +.+..+++.++.+|.++|++++|.++|+++.   ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..
T Consensus       365 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~  442 (597)
T 2xpi_A          365 LVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHL  442 (597)
T ss_dssp             HHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSH
T ss_pred             HHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchH
Confidence            98654 5678899999999999999999999999875   4578899999999999999999999999999863 44788


Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-------CCCCC--HHHHH
Q 004369          491 TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-------DFEPN--EVIWS  561 (758)
Q Consensus       491 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~  561 (758)
                      ++..++.+|.+.|++++|.++|+.+.+.  .+.+..+|+.++.+|.+.|++++|.++|+++       +..|+  ..+|.
T Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~  520 (597)
T 2xpi_A          443 PYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA  520 (597)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence            9999999999999999999999999873  3446889999999999999999999999998       45787  78999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      .++.+|.+.|++++|...++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus       521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999873

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.9e-39  Score=362.78  Aligned_cols=497  Identities=8%  Similarity=-0.003  Sum_probs=408.9

Q ss_pred             CCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCC--CCCcchHHHH
Q 004369           69 GPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLP--RINVVSWTSL  146 (758)
Q Consensus        69 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~l  146 (758)
                      .+.++...|+.++..|.+.|+++.|..+++.+.+.  .|+..++..++.+|.+.|++++|..+|+++.  .++..+|+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l  156 (597)
T 2xpi_A           79 DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLA  156 (597)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHH
Confidence            34467788999999999999999999999999865  4677888999999999999999999999984  5788899999


Q ss_pred             HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCh
Q 004369          147 ISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSL  226 (758)
Q Consensus       147 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~  226 (758)
                      +.+|.+.|++++|+++|+++.     |+..    ...++...++.           ..+.+.+..+++.++.+|.+.|++
T Consensus       157 ~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~  216 (597)
T 2xpi_A          157 AFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLMQ-----------DGGIKLEASMCYLRGQVYTNLSNF  216 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHCSSC-----TTC--------------CC-----------CSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhhHHHHHHHHhccC-----Cccc----ccccccccccc-----------ccccchhHHHHHHHHHHHHHcCCH
Confidence            999999999999999998532     2220    01111111111           123455678888999999999999


Q ss_pred             HHHHHHHhccCCCC---cchHHHHHHHHhhCCChhhHHH--H-HHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHH
Q 004369          227 NSAIKAFNRIREKN---VMSWTTVIGACGENGEAVQGLR--F-FSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHS  300 (758)
Q Consensus       227 ~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~--l-~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  300 (758)
                      ++|.++|+++.+.+   ...|..+...+...+..+.+..  + +..+...+..++..+|..++..+.+.|+++.|.+++.
T Consensus       217 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  296 (597)
T 2xpi_A          217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS  296 (597)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence            99999999887533   3345555544443333222221  1 5555555555666677777888889999999999999


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHH
Q 004369          301 LGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFS  377 (758)
Q Consensus       301 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~  377 (758)
                      .+.+.  +++..+++.++.+|.+.|++++|.++|+++.+   .+..+|+.++.+|.+           .|+.++|..+|+
T Consensus       297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~  363 (597)
T 2xpi_A          297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHE-----------SGEKNKLYLISN  363 (597)
T ss_dssp             TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH-----------HTCHHHHHHHHH
T ss_pred             HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-----------hCCHHHHHHHHH
Confidence            88766  58899999999999999999999999998853   467789999999999           999999999999


Q ss_pred             HhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCh
Q 004369          378 KLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTL  454 (758)
Q Consensus       378 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~  454 (758)
                      +|... .+.+..++..+...+.+.|++++|.+++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++.   ..+.
T Consensus       364 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  441 (597)
T 2xpi_A          364 DLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH  441 (597)
T ss_dssp             HHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            99864 24578889999999999999999999999998864 4568899999999999999999999999875   4477


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhc---CCCCC--HHHHH
Q 004369          455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEY---KIKPV--MDHYM  529 (758)
Q Consensus       455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~  529 (758)
                      .+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..+...|.+.|++++|.++|+++.+..   +..|+  ..+|.
T Consensus       442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~  520 (597)
T 2xpi_A          442 LPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA  520 (597)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence            899999999999999999999999999863 3468899999999999999999999999997732   66787  78999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh
Q 004369          530 CLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS  603 (758)
Q Consensus       530 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  603 (758)
                      .++.+|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|.+.++++++++|+++..+..|+++|..
T Consensus       521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE  596 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence            9999999999999999999998 4455 788999999999999999999999999999999999999999998854

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=4.3e-27  Score=255.41  Aligned_cols=184  Identities=14%  Similarity=0.178  Sum_probs=175.2

Q ss_pred             eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccc---------hHHHHHHHHH
Q 004369          343 VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVA---------LEQGEQIHAL  413 (758)
Q Consensus       343 ~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~a~~i~~~  413 (758)
                      ..++.+|.+|++           .|+.++|+++|++|.+.|++||..||+++|.+|+..+.         ++.|.++|+.
T Consensus        27 ~~l~~~id~c~k-----------~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~   95 (501)
T 4g26_A           27 ALLKQKLDMCSK-----------KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQ   95 (501)
T ss_dssp             HHHHHHHHHTTT-----------SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHH
Confidence            357888999999           99999999999999999999999999999999987554         7889999999


Q ss_pred             HHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004369          414 TLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS----TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ  489 (758)
Q Consensus       414 ~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  489 (758)
                      |.+.|+.||..+||+||++|++.|++++|.++|++|.    .||..+||+||.+|++.|+.++|.++|++|.+.|+.||.
T Consensus        96 M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~  175 (501)
T 4g26_A           96 MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE  175 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence            9999999999999999999999999999999999997    579999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHc
Q 004369          490 VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRL  538 (758)
Q Consensus       490 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~  538 (758)
                      .||++||.+|++.|++++|.++|++|.+ .+..|+..+|+.+++.|...
T Consensus       176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          176 PELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999988 49999999999999998764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=1.1e-24  Score=232.40  Aligned_cols=369  Identities=12%  Similarity=0.110  Sum_probs=259.1

Q ss_pred             HhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhH
Q 004369          184 ACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQG  260 (758)
Q Consensus       184 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A  260 (758)
                      .+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+   .+..+|+.+...|.+.|++++|
T Consensus         8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A   86 (388)
T 1w3b_A            8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            3445566666666666665543 22334445555566666666666666655433   2344566666666666666666


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC-
Q 004369          261 LRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH-  339 (758)
Q Consensus       261 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-  339 (758)
                      ++.|+++.+.  .|+                                  +...+..+...|.+.|++++|.+.|+++.. 
T Consensus        87 ~~~~~~al~~--~p~----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (388)
T 1w3b_A           87 IEHYRHALRL--KPD----------------------------------FIDGYINLAAALVAAGDMEGAVQAYVSALQY  130 (388)
T ss_dssp             HHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc--Ccc----------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6666665542  232                                  233344455555555555555555544432 


Q ss_pred             -CC-eeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHc
Q 004369          340 -VN-LVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKT  417 (758)
Q Consensus       340 -~~-~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~  417 (758)
                       |+ ...|..+...+..           .|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+.+.
T Consensus       131 ~p~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  198 (388)
T 1w3b_A          131 NPDLYCVRSDLGNLLKA-----------LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL  198 (388)
T ss_dssp             CTTCTHHHHHHHHHHHT-----------TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHH-----------ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence             22 2233444444444           566666666666665531 223456666666666667777777766666665


Q ss_pred             CCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 004369          418 GFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFV  493 (758)
Q Consensus       418 ~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~  493 (758)
                      . +.+...+..+...|...|++++|...|++..   +.+..+|..+...|...|++++|++.|+++.+.  .|+ ..++.
T Consensus       199 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~  275 (388)
T 1w3b_A          199 D-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYC  275 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHH
Confidence            3 3456677788888888889999888888654   446788999999999999999999999999984  454 66888


Q ss_pred             HHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC
Q 004369          494 GALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHG  571 (758)
Q Consensus       494 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g  571 (758)
                      .+..++.+.|++++|...|+.+.+.  .+.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+.+.|
T Consensus       276 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  353 (388)
T 1w3b_A          276 NLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            8999999999999999999999873  4556888999999999999999999999998 6666 5778999999999999


Q ss_pred             ChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369          572 NMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGR  606 (758)
Q Consensus       572 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  606 (758)
                      ++++|...+++++++.|+++..|..++.+|...|+
T Consensus       354 ~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          354 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            99999999999999999999999999999887764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=5.3e-27  Score=254.68  Aligned_cols=212  Identities=11%  Similarity=0.049  Sum_probs=166.8

Q ss_pred             hHHHHHHHHHHCCCCCCh-hhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccC
Q 004369          259 QGLRFFSKMLSEGIQPNE-FTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGM  337 (758)
Q Consensus       259 ~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  337 (758)
                      .+..+.+++.+.++.+.. ..++.+|.+|++.|+++.|.++|+.|.+.|+.||..+||+||.+|++.+...++       
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------   80 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------   80 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence            344455555555544332 345566666666666666666666666666666666667777776665543211       


Q ss_pred             CCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHc
Q 004369          338 SHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKT  417 (758)
Q Consensus       338 ~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~  417 (758)
                                     .+           .+..++|.++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.
T Consensus        81 ---------------~~-----------~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~  134 (501)
T 4g26_A           81 ---------------SP-----------NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF  134 (501)
T ss_dssp             ---------------SC-----------CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             ---------------hh-----------cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence                           12           6677899999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004369          418 GFLSDVVVGTALVNMYKKCGRIERASRVFVEMS----TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFV  493 (758)
Q Consensus       418 ~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  493 (758)
                      |+.||..+||+||.+|++.|++++|.++|++|.    .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+
T Consensus       135 g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~  214 (501)
T 4g26_A          135 GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFD  214 (501)
T ss_dssp             TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHH
T ss_pred             CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHH
Confidence            999999999999999999999999999999997    6799999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccc
Q 004369          494 GALAACSNAG  503 (758)
Q Consensus       494 ~ll~a~~~~g  503 (758)
                      .++..++..+
T Consensus       215 ~l~~~F~s~~  224 (501)
T 4g26_A          215 MIEEWFKSEV  224 (501)
T ss_dssp             HHHHHHHSHH
T ss_pred             HHHHHHhcCc
Confidence            9999887654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=7.6e-24  Score=225.75  Aligned_cols=350  Identities=16%  Similarity=0.140  Sum_probs=295.1

Q ss_pred             HHHhhCCChhhHHHHHHHHHHCCCCCCh-hhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 004369          249 GACGENGEAVQGLRFFSKMLSEGIQPNE-FTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLV  327 (758)
Q Consensus       249 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  327 (758)
                      ..+.+.|++++|++.+.++.+.  .|+. ..+..+...+...++++.+...+...++.. +.+...+..+...|.+.|++
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence            4456677777777777776654  2443 344445555666777777777777777654 56778899999999999999


Q ss_pred             HHHHHHHccCCC--C-CeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCH-HHHHHHHHHHhcccc
Q 004369          328 DEAQKLFDGMSH--V-NLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDL-YTFSSILTICSRLVA  403 (758)
Q Consensus       328 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~  403 (758)
                      ++|...|+++..  | +..+|..+...+.+           .|++++|++.|+++.+.  .|+. ..+..+...+...|+
T Consensus        84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~  150 (388)
T 1w3b_A           84 QEAIEHYRHALRLKPDFIDGYINLAAALVA-----------AGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGR  150 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------HSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHcCcchHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccC
Confidence            999999998754  3 44578899999999           99999999999999875  4544 456667778888999


Q ss_pred             hHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004369          404 LEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDM  480 (758)
Q Consensus       404 ~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  480 (758)
                      +++|.+.+..+.+.. +.+..++..+...|.+.|++++|...|+++.   +.+...|..+...+...|++++|+..|++.
T Consensus       151 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  229 (388)
T 1w3b_A          151 LEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA  229 (388)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999998864 4567889999999999999999999999876   345678999999999999999999999999


Q ss_pred             HHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CH
Q 004369          481 LLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NE  557 (758)
Q Consensus       481 ~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~  557 (758)
                      ...  .|+ ..++..+..++...|++++|...|+.+.+.  .+.+...|..+...|.+.|++++|.+.++++ ...| +.
T Consensus       230 l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  305 (388)
T 1w3b_A          230 LSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA  305 (388)
T ss_dssp             HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred             Hhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence            884  555 778889999999999999999999999863  2334778999999999999999999999998 4444 78


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          558 VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       558 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      .+|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|...++.+.+
T Consensus       306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999876

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.3e-22  Score=220.56  Aligned_cols=438  Identities=11%  Similarity=-0.007  Sum_probs=278.9

Q ss_pred             hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHh
Q 004369          142 SWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYS  221 (758)
Q Consensus       142 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~  221 (758)
                      .|......+.+.|++++|+..|+++.+..  |+..++..+..++...|+++.|.+.++.+++.. +.+..++..+..+|.
T Consensus         8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence            35555666777777777777777777654  677777777777777777777777777777654 234566777777777


Q ss_pred             hcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHH
Q 004369          222 TCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQV  298 (758)
Q Consensus       222 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  298 (758)
                      +.|++++|...|+++..   .+......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus        85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM  164 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred             HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence            77777777777776643   233333444443333333333333332222222222221111110000000111111111


Q ss_pred             HHHHHHhCC---------CCchhHHHHHHHHHHh---cCCHHHHHHHHccCCC-----------------CCeeechhHH
Q 004369          299 HSLGIKLGY---------ASNLRVRNSIMYLYLK---CGLVDEAQKLFDGMSH-----------------VNLVTWNAMI  349 (758)
Q Consensus       299 ~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----------------~~~~~~~~li  349 (758)
                      ...+.....         +.+...+..+...+..   .|++++|...|+++.+                 .+...|..+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (514)
T 2gw1_A          165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG  244 (514)
T ss_dssp             HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence            111111100         1223444444444444   7888998888877643                 1234566677


Q ss_pred             HHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHH
Q 004369          350 AGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTAL  429 (758)
Q Consensus       350 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~L  429 (758)
                      ..+..           .|++++|+..|+++.+..  |+...+..+...+...|+++.|...+..+.+.. +.+..++..+
T Consensus       245 ~~~~~-----------~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  310 (514)
T 2gw1_A          245 IFKFL-----------KNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHR  310 (514)
T ss_dssp             HHHHH-----------SSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHH
T ss_pred             HHHHH-----------CCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHH
Confidence            77777           899999999999888754  337777778888888888888888888887754 4456677888


Q ss_pred             hhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHH
Q 004369          430 VNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVY  506 (758)
Q Consensus       430 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  506 (758)
                      ...|.+.|++++|...|++..   ..+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus       311 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  389 (514)
T 2gw1_A          311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFD  389 (514)
T ss_dssp             HHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHH
Confidence            888888888888888888754   3456778888888888888888888888887742 224567777777888888888


Q ss_pred             HHHHHHHHhhhhcCCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHH
Q 004369          507 EALGYFEMMQKEYKIKPV----MDHYMCLIDMFVR---LGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGF  577 (758)
Q Consensus       507 ~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~  577 (758)
                      +|...++.+.+...-.++    ...+..+...|.+   .|++++|.+.++++ ...| +..+|..+...+...|++++|.
T Consensus       390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  469 (514)
T 2gw1_A          390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI  469 (514)
T ss_dssp             HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence            888888887663322232    3477788888888   88888888888877 4444 5667788888888888888888


Q ss_pred             HHHHHHhccCCCCchhHHHH
Q 004369          578 YAAEQLLKLKPKDCESYAML  597 (758)
Q Consensus       578 ~~~~~~~~~~p~~~~~~~~l  597 (758)
                      ..+++++++.|+++..+..+
T Consensus       470 ~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          470 TLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             HHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHHHHhccccHHHHHHH
Confidence            88888888888877666555

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.90  E-value=1.1e-21  Score=213.29  Aligned_cols=335  Identities=13%  Similarity=0.035  Sum_probs=225.6

Q ss_pred             hHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 004369          243 SWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYL  322 (758)
Q Consensus       243 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  322 (758)
                      .|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+++.+ +.+..++..+..+|.
T Consensus        28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  105 (450)
T 2y4t_A           28 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL  105 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence            44444455555555555555555544321 1233344444444444444444444444444443 334555666666677


Q ss_pred             hcCCHHHHHHHHccCCCCCe------eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 004369          323 KCGLVDEAQKLFDGMSHVNL------VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILT  396 (758)
Q Consensus       323 ~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~  396 (758)
                      +.|++++|...|+++...++      ..|..++..+..           .                       .+.....
T Consensus       106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~-----------------------~~~~~a~  151 (450)
T 2y4t_A          106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-----------Q-----------------------RLRSQAL  151 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------H-----------------------HHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-----------H-----------------------HHHHHHH
Confidence            77777777766666544221      333333332111           0                       1111222


Q ss_pred             HHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHH
Q 004369          397 ICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQA  473 (758)
Q Consensus       397 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A  473 (758)
                      .+...|+++.|...+..+.+.. +.+..++..++.+|.+.|++++|.+.|+++.   ..+..+|..+...|...|++++|
T Consensus       152 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  230 (450)
T 2y4t_A          152 NAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS  230 (450)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            3445566666666666665543 4466778888888888888888888888875   45678899999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHH-HHHHH------------HHHHhccccHHHHHHHHHHhhhhcCCCCC--HHHHHHHHHHHHHc
Q 004369          474 LQLFEDMLLAGVRPNQV-TFVGA------------LAACSNAGMVYEALGYFEMMQKEYKIKPV--MDHYMCLIDMFVRL  538 (758)
Q Consensus       474 ~~~~~~m~~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~  538 (758)
                      +..|+++...  .|+.. .+..+            ..+|.+.|++++|..+|+.+.+...-.|.  ..+|..++.++.+.
T Consensus       231 ~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~  308 (450)
T 2y4t_A          231 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD  308 (450)
T ss_dssp             HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence            9999999874  55543 33333            67899999999999999999874222222  45889999999999


Q ss_pred             CCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHH------------HHhhhC
Q 004369          539 GCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLL------------DIFVSA  604 (758)
Q Consensus       539 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~  604 (758)
                      |++++|++.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++            +.|...
T Consensus       309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~l  388 (450)
T 2y4t_A          309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKIL  388 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence            9999999999998 5556 6889999999999999999999999999999999999999999            557666


Q ss_pred             C-----CchhHHHHHHH
Q 004369          605 G-----RWEDVAVVKNL  616 (758)
Q Consensus       605 g-----~~~~a~~~~~~  616 (758)
                      |     +.+++.+.++.
T Consensus       389 g~~~~~~~~~~~~~y~~  405 (450)
T 2y4t_A          389 GVKRNAKKQEIIKAYRK  405 (450)
T ss_dssp             CSSTTCCTTHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHH
Confidence            7     33444554443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.1e-21  Score=212.66  Aligned_cols=427  Identities=8%  Similarity=-0.081  Sum_probs=311.6

Q ss_pred             hHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC--C-CcchHHHHHHHHhh
Q 004369          177 TLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE--K-NVMSWTTVIGACGE  253 (758)
Q Consensus       177 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~  253 (758)
                      .+...-..+...|+++.|...+..+++..  |+..++..+..+|.+.|++++|...|+++.+  | +...|..+...|.+
T Consensus         8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   85 (514)
T 2gw1_A            8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG   85 (514)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            45555667788899999999999999876  6888999999999999999999999998764  3 45688889999999


Q ss_pred             CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHH---HHHHHHhcCCHHHH
Q 004369          254 NGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNS---IMYLYLKCGLVDEA  330 (758)
Q Consensus       254 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A  330 (758)
                      .|++++|+..|+++...+. ++......++..+........+.+.+..+...+..++....+.   .............+
T Consensus        86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
T 2gw1_A           86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM  164 (514)
T ss_dssp             TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred             HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence            9999999999999988753 3444444444444333222222222222211111111100000   00000111111112


Q ss_pred             HHHHccCCC---------CC-eeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHh-----CCCC--------CC
Q 004369          331 QKLFDGMSH---------VN-LVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNS-----SGMK--------PD  387 (758)
Q Consensus       331 ~~~~~~m~~---------~~-~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~-----~g~~--------p~  387 (758)
                      ...+.....         ++ ...|......+..        +...|++++|+..|+++.+     ..-.        .+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (514)
T 2gw1_A          165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLY--------KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL  236 (514)
T ss_dssp             HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHS--------SCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHH--------hhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence            222222211         11 1112111111111        0117999999999999987     3112        23


Q ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHH
Q 004369          388 LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGF  464 (758)
Q Consensus       388 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~  464 (758)
                      ..++..+...+...|+++.|...+..+.+....  ..++..+...|.+.|++++|...|+++.   ..+...|..+...|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  314 (514)
T 2gw1_A          237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN  314 (514)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence            456777888899999999999999999987643  8889999999999999999999999865   34667899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004369          465 ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA  544 (758)
Q Consensus       465 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A  544 (758)
                      ...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+.+.  .+.+...+..+...|.+.|++++|
T Consensus       315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A  391 (514)
T 2gw1_A          315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKA  391 (514)
T ss_dssp             HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999853 234678888899999999999999999999874  233567889999999999999999


Q ss_pred             HHHHHHc----CCCCC----HHHHHHHHHHHHH---cCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369          545 FDFIKKM----DFEPN----EVIWSVFIAGCRR---HGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV  613 (758)
Q Consensus       545 ~~~~~~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  613 (758)
                      .+.++++    +..|+    ..+|..+...+..   .|++++|...++++++..|+++..+..++.+|...|++++|...
T Consensus       392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  471 (514)
T 2gw1_A          392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL  471 (514)
T ss_dssp             HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999987    22222    3489999999999   99999999999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 004369          614 KNLTRE  619 (758)
Q Consensus       614 ~~~m~~  619 (758)
                      ++...+
T Consensus       472 ~~~a~~  477 (514)
T 2gw1_A          472 FEESAD  477 (514)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999887

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.88  E-value=3.9e-20  Score=206.10  Aligned_cols=434  Identities=9%  Similarity=-0.013  Sum_probs=313.5

Q ss_pred             chHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 004369          141 VSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLY  220 (758)
Q Consensus       141 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y  220 (758)
                      ..|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|.+.++.+++.. +.+..++..+...|
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  103 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence            456777778888888888888888888753 2356677777777778888888888888887764 33566777788888


Q ss_pred             hhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHH
Q 004369          221 STCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHS  300 (758)
Q Consensus       221 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  300 (758)
                      ...|++++|...|+.+ ..+....+..+..+...+...+|+..++++....  |+..                       
T Consensus       104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~-----------------------  157 (537)
T 3fp2_A          104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG-----------------------  157 (537)
T ss_dssp             HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred             HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cccc-----------------------
Confidence            8888888888888643 3233333333445555556677777777775431  1000                       


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCee---echhHHHHHhhhchhhhchhhcCCChhHHHHHHH
Q 004369          301 LGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLV---TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFS  377 (758)
Q Consensus       301 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~  377 (758)
                          ....|+    ...+..|....+.+.+...+......+..   .+..+...+....   .......|++++|+.+|+
T Consensus       158 ----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~a~~~~~~A~~~~~  226 (537)
T 3fp2_A          158 ----SQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD---EGYLVANDLLTKSTDMYH  226 (537)
T ss_dssp             -----CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH---HHHHHHHHHHHHHHHHHH
T ss_pred             ----ccccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHH
Confidence                001111    23344455667777777777776654433   2222222222200   000001357899999999


Q ss_pred             HhHhCCCCCC--------HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhc
Q 004369          378 KLNSSGMKPD--------LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEM  449 (758)
Q Consensus       378 ~m~~~g~~p~--------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~  449 (758)
                      ++.+..  |+        ..++..+...+...|+++.|...+..+.+..  |+..++..+...|.+.|++++|...|+++
T Consensus       227 ~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  302 (537)
T 3fp2_A          227 SLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKA  302 (537)
T ss_dssp             HHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHH
T ss_pred             HHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            998753  33        2346666677888999999999999999864  44788889999999999999999999987


Q ss_pred             C---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHH
Q 004369          450 S---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMD  526 (758)
Q Consensus       450 ~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~  526 (758)
                      .   ..+..+|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+.  .+.+..
T Consensus       303 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~  379 (537)
T 3fp2_A          303 VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPE  379 (537)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTH
T ss_pred             hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH
Confidence            5   4567889999999999999999999999999853 224678888999999999999999999999874  234567


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc----CCCC----CHHHHHHHHHHHHHc----------CChhHHHHHHHHHhccCC
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKM----DFEP----NEVIWSVFIAGCRRH----------GNMELGFYAAEQLLKLKP  588 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p  588 (758)
                      .+..+...|.+.|++++|.+.++++    +..+    ....+..+...+...          |++++|...++++++..|
T Consensus       380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p  459 (537)
T 3fp2_A          380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP  459 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence            8899999999999999999999987    1111    223345556777777          999999999999999999


Q ss_pred             CCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          589 KDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       589 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      +++..+..++.+|...|++++|.+.++...+.
T Consensus       460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998873

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.86  E-value=1.2e-19  Score=197.19  Aligned_cols=294  Identities=11%  Similarity=0.029  Sum_probs=220.8

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCC
Q 004369          310 NLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP  386 (758)
Q Consensus       310 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p  386 (758)
                      +...+..+...|.+.|++++|..+|+++.+   .+...|..+...|.+           .|++++|+..|+++.+.+ +.
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~al~~~-p~   92 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA-----------MGKSKAALPDLTKVIQLK-MD   92 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHhcC-CC
Confidence            444555555566666666666666655432   234455555555555           666666666666655532 22


Q ss_pred             CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChH---HHHhHH------------hhhHHhcCCHHHHHHHHHhcC-
Q 004369          387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDV---VVGTAL------------VNMYKKCGRIERASRVFVEMS-  450 (758)
Q Consensus       387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~---~~~~~L------------i~~y~~~g~~~~A~~~~~~~~-  450 (758)
                      +...+..+..++...|++++|...+..+.+.. +.+.   ..+..+            ...|.+.|++++|...|+++. 
T Consensus        93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  171 (450)
T 2y4t_A           93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE  171 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455555556666666666666666655542 2223   333333            455889999999999999875 


Q ss_pred             --CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHH
Q 004369          451 --TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDH  527 (758)
Q Consensus       451 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~  527 (758)
                        ..+...|..++..|...|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+.   .|+ ...
T Consensus       172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~  247 (450)
T 2y4t_A          172 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRC  247 (450)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred             hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHH
Confidence              4577899999999999999999999999998852 345788999999999999999999999999763   343 444


Q ss_pred             HHHH------------HHHHHHcCCHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          528 YMCL------------IDMFVRLGCIEEAFDFIKKM-DFEPN-----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       528 ~~~l------------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      +..+            ...+.+.|++++|.+.|+++ ...|+     ...|..+...+.+.|++++|...+++++++.|+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  327 (450)
T 2y4t_A          248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD  327 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            4444            88999999999999999998 55554     347888999999999999999999999999999


Q ss_pred             CchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          590 DCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       590 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      ++..+..++.+|...|++++|...++.+.+.
T Consensus       328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999863

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.85  E-value=1.3e-18  Score=193.64  Aligned_cols=440  Identities=7%  Similarity=-0.025  Sum_probs=275.4

Q ss_pred             hHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHh
Q 004369           76 SYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR---INVVSWTSLISGYVQ  152 (758)
Q Consensus        76 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~  152 (758)
                      .+..+-..+.+.|+++.|...++.+++.. +.+...+..+...|.+.|++++|.+.|++..+   .+..+|..+...+..
T Consensus        27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  105 (537)
T 3fp2_A           27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES  105 (537)
T ss_dssp             HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            34555566667777777777777777665 45666777777777777777777777766542   345566677777777


Q ss_pred             CCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHhhcCChHHHH
Q 004369          153 NSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQT--EDDTSVGNSLCSLYSTCGSLNSAI  230 (758)
Q Consensus       153 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~  230 (758)
                      .|++++|+..|+.+..   .|+...  ..+..+...+....+...+..+++...  .+........+..|....+.+.+.
T Consensus       106 ~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (537)
T 3fp2_A          106 LGNFTDAMFDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV  180 (537)
T ss_dssp             HTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred             cCCHHHHHHHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence            7777777777753321   222111  112222222333445555544433210  001111122333344455555555


Q ss_pred             HHHhccCCCCcc---hHHHHHHHHhhC--------CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHH
Q 004369          231 KAFNRIREKNVM---SWTTVIGACGEN--------GEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVH  299 (758)
Q Consensus       231 ~~f~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  299 (758)
                      ..+......+..   .+..+...+...        |++++|+.+|+++.+..  |+                        
T Consensus       181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~------------------------  234 (537)
T 3fp2_A          181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TV------------------------  234 (537)
T ss_dssp             HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CC------------------------
T ss_pred             HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CC------------------------
Confidence            555555443332   222222222211        23344444444443321  11                        


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHh
Q 004369          300 SLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKL  379 (758)
Q Consensus       300 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m  379 (758)
                                +..++..+..+                        |..+...+..           .|++++|+..|++.
T Consensus       235 ----------~~~~~~~~~~~------------------------~~~~g~~~~~-----------~~~~~~A~~~~~~~  269 (537)
T 3fp2_A          235 ----------DDPLRENAALA------------------------LCYTGIFHFL-----------KNNLLDAQVLLQES  269 (537)
T ss_dssp             ----------CHHHHHHHHHH------------------------HHHHHHHHHH-----------TTCHHHHHHHHHHH
T ss_pred             ----------cchhhHHHHHH------------------------HHHHHHHHHh-----------cccHHHHHHHHHHH
Confidence                      11111111111                        1222233444           77777777777777


Q ss_pred             HhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhH
Q 004369          380 NSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLIS  456 (758)
Q Consensus       380 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~  456 (758)
                      .+.  .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|++..   ..+...
T Consensus       270 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  346 (537)
T 3fp2_A          270 INL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP  346 (537)
T ss_dssp             HHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHH
T ss_pred             Hhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            664  4556677777777788888888888888777754 4467788888999999999999999998865   345678


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC----CHHHHHHHH
Q 004369          457 WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP----VMDHYMCLI  532 (758)
Q Consensus       457 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li  532 (758)
                      |..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+    ....+..+.
T Consensus       347 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a  425 (537)
T 3fp2_A          347 YIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA  425 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence            9999999999999999999999998853 33466888888899999999999999999876321111    223345566


Q ss_pred             HHHHHc----------CCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369          533 DMFVRL----------GCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM  596 (758)
Q Consensus       533 ~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  596 (758)
                      ..|.+.          |++++|...++++ ...| +..+|..+...+...|++++|...+++++++.|+++.....
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  501 (537)
T 3fp2_A          426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA  501 (537)
T ss_dssp             HHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred             HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            778888          9999999999998 4455 67889999999999999999999999999999987665443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.81  E-value=2.4e-17  Score=172.73  Aligned_cols=303  Identities=9%  Similarity=-0.027  Sum_probs=207.7

Q ss_pred             hhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHh
Q 004369          277 FTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHA  353 (758)
Q Consensus       277 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~  353 (758)
                      ..+..+...+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|+++.+   .+...|..+...|.
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            344555556666667777777776666654 34455666666666666666666666665533   23345555555555


Q ss_pred             hhchhhhchhhcCCChhHHHHHHHHhHhCCCCC---CHH-HHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHH
Q 004369          354 QMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP---DLY-TFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTAL  429 (758)
Q Consensus       354 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p---~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~L  429 (758)
                      .           .|++++|+..|++..+.  .|   +.. .+..+...       ..                ...+..+
T Consensus        83 ~-----------~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~  126 (359)
T 3ieg_A           83 K-----------QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQ  126 (359)
T ss_dssp             H-----------HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHH
T ss_pred             H-----------cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHH
Confidence            5           66666666666666553  23   111 11111000       00                0112233


Q ss_pred             hhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHH
Q 004369          430 VNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVY  506 (758)
Q Consensus       430 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  506 (758)
                      ...|...|++++|.+.|+++.   +.+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|+++
T Consensus       127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  205 (359)
T 3ieg_A          127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHE  205 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence            567778888888888888765   4466778888888888888888888888888742 334667778888888888888


Q ss_pred             HHHHHHHHhhhhcCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHc-CCCCC-H----HHHHHHHHHHH
Q 004369          507 EALGYFEMMQKEYKIKPVMDHYM------------CLIDMFVRLGCIEEAFDFIKKM-DFEPN-E----VIWSVFIAGCR  568 (758)
Q Consensus       507 ~a~~~~~~~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~  568 (758)
                      +|...++.+.+...  .+...+.            .+...+.+.|++++|.+.++++ ...|+ .    ..+..+...+.
T Consensus       206 ~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  283 (359)
T 3ieg_A          206 LSLSEVRECLKLDQ--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS  283 (359)
T ss_dssp             HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCc--cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence            88888888876322  2222222            3367788999999999999987 44453 2    23556778889


Q ss_pred             HcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          569 RHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       569 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ..|++++|...++++++..|+++..+..++.+|...|++++|.+.++.+.+
T Consensus       284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  334 (359)
T 3ieg_A          284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE  334 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999998876

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.79  E-value=6.1e-17  Score=169.66  Aligned_cols=331  Identities=14%  Similarity=0.031  Sum_probs=260.1

Q ss_pred             CcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004369          240 NVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMY  319 (758)
Q Consensus       240 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  319 (758)
                      |+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+++.. +.+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            34567888899999999999999999998853 2356788888899999999999999999999875 556788999999


Q ss_pred             HHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHh
Q 004369          320 LYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICS  399 (758)
Q Consensus       320 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~  399 (758)
                      .|.+.|++++|...|++..+.++.. .                     ....+...+....      ....+......+.
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~-~---------------------~~~~~~~~l~~~~------~~~~~~~~a~~~~  131 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSE-Q---------------------EEKEAESQLVKAD------EMQRLRSQALDAF  131 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCH-H---------------------HHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcc-c---------------------ChHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence            9999999999999999886532200 0                     0011111111100      0112334455677


Q ss_pred             cccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHH
Q 004369          400 RLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQL  476 (758)
Q Consensus       400 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~  476 (758)
                      ..|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|++..   ..+...|..+...|...|++++|+..
T Consensus       132 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  210 (359)
T 3ieg_A          132 DGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE  210 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8899999999999888764 4567888899999999999999999999865   34678899999999999999999999


Q ss_pred             HHHHHHcCCCCC-HHHHH------------HHHHHHhccccHHHHHHHHHHhhhhcCCCCCH--HHHHHHHHHHHHcCCH
Q 004369          477 FEDMLLAGVRPN-QVTFV------------GALAACSNAGMVYEALGYFEMMQKEYKIKPVM--DHYMCLIDMFVRLGCI  541 (758)
Q Consensus       477 ~~~m~~~g~~p~-~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~  541 (758)
                      |++..+.  .|+ ...+.            .+...+.+.|++++|...++.+.+...-.+..  ..+..+...|.+.|++
T Consensus       211 ~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  288 (359)
T 3ieg_A          211 VRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP  288 (359)
T ss_dssp             HHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCH
Confidence            9999884  444 22222            23556889999999999999998743222211  3456688999999999


Q ss_pred             HHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh
Q 004369          542 EEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS  603 (758)
Q Consensus       542 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  603 (758)
                      ++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..|..++..
T Consensus       289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL  352 (359)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            9999999998 4456 688899999999999999999999999999999999988888877654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.77  E-value=7.5e-17  Score=166.91  Aligned_cols=286  Identities=14%  Similarity=0.025  Sum_probs=221.7

Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCC
Q 004369          308 ASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGM  384 (758)
Q Consensus       308 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~  384 (758)
                      +.+..++..+...+...|++++|.++|+++..   .+...+..++..+.+           .|++++|+.+++++.+.. 
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~-----------~~~~~~A~~~~~~~~~~~-   86 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE-----------LNKANELFYLSHKLVDLY-   86 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHH-----------HTCHHHHHHHHHHHHHHC-
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH-----------hhhHHHHHHHHHHHHHhC-
Confidence            45556666777777777888888887777644   233344555666666           788888888888877642 


Q ss_pred             CCCHHHHHHHHHHHhccc-chHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHH
Q 004369          385 KPDLYTFSSILTICSRLV-ALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSM  460 (758)
Q Consensus       385 ~p~~~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~l  460 (758)
                      +.+...+..+...+...| +++.|...+..+.+.. +.+...+..+...|...|++++|...|++..   ..+...|..+
T Consensus        87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  165 (330)
T 3hym_B           87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI  165 (330)
T ss_dssp             TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            224556667777777788 7888888888877654 4456778888889999999999999988865   3355778888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcC-------CCCCHHHHHHHHH
Q 004369          461 ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYK-------IKPVMDHYMCLID  533 (758)
Q Consensus       461 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~  533 (758)
                      ...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..+++.+.+...       .+.....+..+..
T Consensus       166 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~  244 (330)
T 3hym_B          166 GLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH  244 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence            889999999999999999998752 33467788888889999999999999998876321       1334678899999


Q ss_pred             HHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh-hhCCCc
Q 004369          534 MFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF-VSAGRW  607 (758)
Q Consensus       534 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~  607 (758)
                      .|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++|+++..+..++.++ ...|+.
T Consensus       245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence            999999999999999987 4445 5778999999999999999999999999999999999999999988 455554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.77  E-value=1.9e-14  Score=164.85  Aligned_cols=379  Identities=10%  Similarity=0.067  Sum_probs=283.1

Q ss_pred             hHHHHHHHhcccCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhC
Q 004369          177 TLGTALTACSSLESIRLGKQIHAYVVKYQ--TEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGEN  254 (758)
Q Consensus       177 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~  254 (758)
                      -.....+++...|...++.++++.++-.+  +..+....+.|+.+..+. +..+..+..++...-+   ...+...+...
T Consensus       987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A          987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred             HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence            34556777778888888888888877332  113445666677666666 4455555555544222   44466778889


Q ss_pred             CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004369          255 GEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLF  334 (758)
Q Consensus       255 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  334 (758)
                      |.+++|..+|++..     -.......++.   ..++++.|.++...+      .+..+|..+..++.+.|++++|.+.|
T Consensus      1063 glyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A         1063 ELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred             CCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            99999999999852     11111222322   567788888887754      45778889999999999999999999


Q ss_pred             ccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHH
Q 004369          335 DGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALT  414 (758)
Q Consensus       335 ~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~  414 (758)
                      .+.  .|...|.-++..+.+           .|++++|++.|...++..  +++...+.+..+|++.++++....+.   
T Consensus      1129 iKA--dD~say~eVa~~~~~-----------lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A         1129 IKA--DDPSSYMEVVQAANT-----------SGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred             Hhc--CChHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence            765  566677788888888           999999999998777653  33333335888888888887644442   


Q ss_pred             HHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004369          415 LKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVG  494 (758)
Q Consensus       415 ~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~  494 (758)
                       +   .++...+..+.+.|...|++++|..+|...     ..|..+...|.+.|++++|++.+++.      -+..+|..
T Consensus      1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A         1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred             -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence             2   335556667899999999999999999985     48999999999999999999999876      35688888


Q ss_pred             HHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc--
Q 004369          495 ALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH--  570 (758)
Q Consensus       495 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--  570 (758)
                      +-.+|...|++..|......      +..+.+.+..++..|.+.|.+++|+.+++.. +.+| ....|.-|...+.+.  
T Consensus      1256 v~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A         1256 VCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred             HHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence            88899999999998876543      3345677889999999999999999999877 6666 455677777777664  


Q ss_pred             CChhHHHHHHHHHhccCC-----CCchhHHHHHHHhhhCCCchhHHH
Q 004369          571 GNMELGFYAAEQLLKLKP-----KDCESYAMLLDIFVSAGRWEDVAV  612 (758)
Q Consensus       571 g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~  612 (758)
                      ++..++.+.|..-..+.|     .+...|..++-.|.+.|.|+.|..
T Consensus      1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            467778888887777766     677889999999999999999985

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=2.6e-17  Score=169.87  Aligned_cols=320  Identities=13%  Similarity=0.095  Sum_probs=155.3

Q ss_pred             hcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHH
Q 004369          222 TCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSL  301 (758)
Q Consensus       222 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  301 (758)
                      +.|++++|.++++++..|+  +|..|+.++.+.|++++|++.|.+.      +|..+|..++.++...|++++|..++..
T Consensus        15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            6788999999999996654  9999999999999999999999763      6788999999999999999999998888


Q ss_pred             HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHh
Q 004369          302 GIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNS  381 (758)
Q Consensus       302 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~  381 (758)
                      ..+.  .+++.+.+.|+.+|.++|+++++.++++.   |+..+|+.+...|..           .|.+++|...|..+  
T Consensus        87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~-----------~g~yeeA~~~Y~~a--  148 (449)
T 1b89_A           87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYD-----------EKMYDAAKLLYNNV--  148 (449)
T ss_dssp             ------------------------CHHHHTTTTTC---C---------------------------CTTTHHHHHHHT--
T ss_pred             HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHH-----------cCCHHHHHHHHHHh--
Confidence            8774  45678899999999999999999988864   677899999999999           99999999999987  


Q ss_pred             CCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHH
Q 004369          382 SGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMI  461 (758)
Q Consensus       382 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li  461 (758)
                             ..|..+..++.+.|+++.|.+.+..+      .++.+|..++.+|...|+++.|......+. .++.-...++
T Consensus       149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv  214 (449)
T 1b89_A          149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELI  214 (449)
T ss_dssp             -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHH
T ss_pred             -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHH
Confidence                   37899999999999999999999887      378899999999999999999988777655 4554455789


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC------CHHHHHHHH
Q 004369          462 TGFANHSLSHQALQLFEDMLLAGVRPN---QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP------VMDHYMCLI  532 (758)
Q Consensus       462 ~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li  532 (758)
                      ..|.+.|++++|+.+++.....  .+.   ..|...++.+-.+.+++.+..+.|..-   .+++|      +..+|.-++
T Consensus       215 ~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~  289 (449)
T 1b89_A          215 NYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELV  289 (449)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999998753  333   334444555555566777777766533   35555      467799999


Q ss_pred             HHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCC
Q 004369          533 DMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKP  588 (758)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  588 (758)
                      -.|..-++++.|...+-+-+  |+..--..+.....+..+.|.--++..--++..|
T Consensus       290 ~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p  343 (449)
T 1b89_A          290 FLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP  343 (449)
T ss_dssp             HHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred             HHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence            99999999999988665542  2333333444445555555554444444444433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.74  E-value=1.8e-16  Score=167.08  Aligned_cols=282  Identities=11%  Similarity=-0.020  Sum_probs=224.8

Q ss_pred             HHhcCCHHHHHH-HHccCCC-------CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHH
Q 004369          321 YLKCGLVDEAQK-LFDGMSH-------VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFS  392 (758)
Q Consensus       321 ~~~~g~~~~A~~-~~~~m~~-------~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  392 (758)
                      |.-.|++++|.. .|++...       .+...|..+...+.+           .|++++|+..|+++.+.. +.+..++.
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----------~g~~~~A~~~~~~al~~~-p~~~~~~~  102 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ-----------EGDLPNAVLLFEAAVQQD-PKHMEAWQ  102 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH-----------TTCHHHHHHHHHHHHHSC-TTCHHHHH
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            334578888888 7775543       134567778888888           999999999999998863 34677888


Q ss_pred             HHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---ChhHHHH----------
Q 004369          393 SILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR---TLISWTS----------  459 (758)
Q Consensus       393 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~----------  459 (758)
                      .+..++...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++...   +...+..          
T Consensus       103 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (368)
T 1fch_A          103 YLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL  181 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcc
Confidence            88889999999999999999998875 557888999999999999999999999986632   2222221          


Q ss_pred             -----HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 004369          460 -----MITGFANHSLSHQALQLFEDMLLAGVRP-NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLID  533 (758)
Q Consensus       460 -----li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~  533 (758)
                           .+..+...|++++|+..|+++.+..... +..++..+...+...|++++|...|+.+.+.  .+.+...|..+..
T Consensus       182 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~  259 (368)
T 1fch_A          182 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGA  259 (368)
T ss_dssp             ----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHH
Confidence                 2333448899999999999999853221 4788899999999999999999999999873  2345788999999


Q ss_pred             HHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC-----------chhHHHHHHH
Q 004369          534 MFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD-----------CESYAMLLDI  600 (758)
Q Consensus       534 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~  600 (758)
                      .|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|++           ...+..++.+
T Consensus       260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~  339 (368)
T 1fch_A          260 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA  339 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHH
Confidence            999999999999999998 5555 57889999999999999999999999999998887           7899999999


Q ss_pred             hhhCCCchhHHHHHHHh
Q 004369          601 FVSAGRWEDVAVVKNLT  617 (758)
Q Consensus       601 ~~~~g~~~~a~~~~~~m  617 (758)
                      |...|++++|..+.+..
T Consensus       340 ~~~~g~~~~A~~~~~~~  356 (368)
T 1fch_A          340 LSMLGQSDAYGAADARD  356 (368)
T ss_dssp             HHHHTCGGGHHHHHTTC
T ss_pred             HHHhCChHhHHHhHHHH
Confidence            99999999999887643

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.74  E-value=1.1e-16  Score=165.41  Aligned_cols=284  Identities=10%  Similarity=0.071  Sum_probs=109.3

Q ss_pred             hcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHH
Q 004369          120 GKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHA  199 (758)
Q Consensus       120 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  199 (758)
                      -+.|++++|.+.+++++.|+  +|..|..++.+.|++++|++.|.+.      +|..+|..++.++...|++++|...+.
T Consensus        14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~   85 (449)
T 1b89_A           14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ   85 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            36788999999999997664  7999999999999999999999653      577899999999999999999999888


Q ss_pred             HHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhH
Q 004369          200 YVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTL  279 (758)
Q Consensus       200 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  279 (758)
                      .+.+.  .+++.+.+.|+.+|.++|+++++.++++.   |+..+|+.+...|...|++++|..+|..+         ..|
T Consensus        86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~  151 (449)
T 1b89_A           86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF  151 (449)
T ss_dssp             -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred             HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence            87774  45678899999999999999999988864   77789999999999999999999999987         357


Q ss_pred             HHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhh
Q 004369          280 TSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLA  359 (758)
Q Consensus       280 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~  359 (758)
                      ..+..++.+.|+++.|.+.+..+      .++.+|..++.+|...|+++.|......+.. ++.....++..|.+     
T Consensus       152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~-~ad~l~~lv~~Yek-----  219 (449)
T 1b89_A          152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADELEELINYYQD-----  219 (449)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTT-CHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHh-CHhhHHHHHHHHHH-----
Confidence            78888888888888888887776      3677788888888888888888776666542 22223346667777     


Q ss_pred             hchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHH--hcccchHHHHHHHHHHHHcCCCC------hHHHHhHHhh
Q 004369          360 KDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTIC--SRLVALEQGEQIHALTLKTGFLS------DVVVGTALVN  431 (758)
Q Consensus       360 ~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~~~~~------~~~~~~~Li~  431 (758)
                            .|++++|+.+++...... +.....|+-+--++  -+.+++.+..+.|.  .+..+++      +..+|..++-
T Consensus       220 ------~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~  290 (449)
T 1b89_A          220 ------RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVF  290 (449)
T ss_dssp             ------TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHH
T ss_pred             ------CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHH
Confidence                  788888888777765432 22333333333333  23333333333332  1112222      2445556666


Q ss_pred             hHHhcCCHHHHHHHH
Q 004369          432 MYKKCGRIERASRVF  446 (758)
Q Consensus       432 ~y~~~g~~~~A~~~~  446 (758)
                      .|.+.++++.|..+.
T Consensus       291 ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          291 LYDKYEEYDNAIITM  305 (449)
T ss_dssp             HHHHTTCHHHHHHHH
T ss_pred             HHHhhchHHHHHHHH
Confidence            666666666665543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.73  E-value=1.9e-14  Score=159.53  Aligned_cols=209  Identities=9%  Similarity=0.016  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHHcCCCChHHHHhHHhhhHHh-------cCCHH-------HHHHHHHhcCC---C-ChhHHHHHHHHHHhc
Q 004369          406 QGEQIHALTLKTGFLSDVVVGTALVNMYKK-------CGRIE-------RASRVFVEMST---R-TLISWTSMITGFANH  467 (758)
Q Consensus       406 ~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~  467 (758)
                      .+..+++.+++.. +.+..+|..++..+.+       .|+++       +|..+|++...   | +...|..++..+.+.
T Consensus       256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            5666777777752 5567788888888875       68877       89999998763   3 577899999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHH-HHHcCCHHH
Q 004369          468 SLSHQALQLFEDMLLAGVRPNQ--VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDM-FVRLGCIEE  543 (758)
Q Consensus       468 g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~~~  543 (758)
                      |++++|..+|+++.+  +.|+.  ..|...+..+.+.|++++|..+|+...+.   .|+ ...|...+.+ +...|+.++
T Consensus       335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~  409 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV  409 (530)
T ss_dssp             TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred             CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence            999999999999998  46653  47888888888999999999999999763   232 3333333322 346899999


Q ss_pred             HHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch----hHHHHHHHhhhCCCchhHHHHHHHh
Q 004369          544 AFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE----SYAMLLDIFVSAGRWEDVAVVKNLT  617 (758)
Q Consensus       544 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m  617 (758)
                      |.++|++. ...| +...|..++....+.|+.+.|..+++++++..|.++.    .+...+......|+.+.+.++.+.+
T Consensus       410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999987 4445 5788999999999999999999999999998877665    7777788888899999999999888


Q ss_pred             hhC
Q 004369          618 REE  620 (758)
Q Consensus       618 ~~~  620 (758)
                      .+.
T Consensus       490 ~~~  492 (530)
T 2ooe_A          490 FTA  492 (530)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            763

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.73  E-value=7.8e-16  Score=159.21  Aligned_cols=264  Identities=13%  Similarity=0.011  Sum_probs=225.9

Q ss_pred             CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCC
Q 004369          340 VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGF  419 (758)
Q Consensus       340 ~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~  419 (758)
                      .+...+..+...+..           .|++++|+++|+++.+.. +.+...+..+...+...|++++|...+..+.+.. 
T Consensus        20 ~~~~~~~~~a~~~~~-----------~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-   86 (330)
T 3hym_B           20 ENLDVVVSLAERHYY-----------NCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-   86 (330)
T ss_dssp             CCCTTHHHHHHHHHH-----------TTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred             hhHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-
Confidence            345566677777888           999999999999998753 2344566667788889999999999999998864 


Q ss_pred             CChHHHHhHHhhhHHhcC-CHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004369          420 LSDVVVGTALVNMYKKCG-RIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGA  495 (758)
Q Consensus       420 ~~~~~~~~~Li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l  495 (758)
                      +.+..++..+...|...| ++++|...|++..   ..+...|..+...+...|++++|+..|+++.+.. +.+...+..+
T Consensus        87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l  165 (330)
T 3hym_B           87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYI  165 (330)
T ss_dssp             TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHH
Confidence            456788899999999999 9999999999865   3456789999999999999999999999999853 2235677778


Q ss_pred             HHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CC----------CCCHHHHHHHH
Q 004369          496 LAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DF----------EPNEVIWSVFI  564 (758)
Q Consensus       496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll  564 (758)
                      ...+...|++++|..+++.+.+.  .+.+...+..+...|.+.|++++|.+.++++ ..          ..+..+|..+.
T Consensus       166 ~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la  243 (330)
T 3hym_B          166 GLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG  243 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence            88999999999999999999762  3445788999999999999999999999887 11          22467899999


Q ss_pred             HHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          565 AGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       565 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ..+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus       244 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          244 HVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred             HHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999998765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.72  E-value=6.9e-13  Score=152.24  Aligned_cols=420  Identities=10%  Similarity=0.085  Sum_probs=300.8

Q ss_pred             chHHHHHHHhhcCCCcHHHHHHHHHHHHhC--CCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHh
Q 004369           75 SSYVSLLQECVNRKSLSNAEIIHAHIVKTG--SHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQ  152 (758)
Q Consensus        75 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~  152 (758)
                      .-....++++...|.+.+|.++++.++..+  +..+....+.|+....+. +.....+..++...-+   ...+...+..
T Consensus       986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A          986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred             HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence            345667888889999999999999988432  223456677777666665 4455555544444222   4556778888


Q ss_pred             CCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHH
Q 004369          153 NSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKA  232 (758)
Q Consensus       153 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~  232 (758)
                      .|.+++|..+|++...     .....+.++.   ..++++.|.++.+.+      .++.+|..+..++.+.|++++|...
T Consensus      1062 lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A         1062 NELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred             CCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            9999999999998521     2222233332   567788888887754      4578889999999999999999999


Q ss_pred             HhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchh
Q 004369          233 FNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLR  312 (758)
Q Consensus       233 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~  312 (758)
                      |.+.  .|...|..++..+.+.|++++|++.|...++..  ++....+.+.-++++.++++....+.    +   .++..
T Consensus      1128 YiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~a 1196 (1630)
T 1xi4_A         1128 YIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNA 1196 (1630)
T ss_pred             HHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHH
Confidence            9765  677788889999999999999999998877654  44333445888888888887644442    1   44556


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHH
Q 004369          313 VRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFS  392 (758)
Q Consensus       313 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  392 (758)
                      .+..+.+.|...|++++|...|...     ..|..+...|.+           .|++++|.+.+++.      -+..+|.
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvk-----------Lge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVH-----------LGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHH-----------hCCHHHHHHHHHHh------CCHHHHH
Confidence            6677999999999999999999986     378999999999           99999999999876      3567888


Q ss_pred             HHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhc--
Q 004369          393 SILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR---TLISWTSMITGFANH--  467 (758)
Q Consensus       393 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~--  467 (758)
                      .+-.+|...|++..|......     +..+...+..++..|.+.|.+++|..+++....-   ....|+-|...|++.  
T Consensus      1255 ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A         1255 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred             HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence            888899888888888775543     2335566778999999999999999999876533   445677777777764  


Q ss_pred             CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHhccccHHHHHHHHHHh----------hhhcCCCCCHHHHHHH
Q 004369          468 SLSHQALQLFEDMLLAGVRP------NQVTFVGALAACSNAGMVYEALGYFEMM----------QKEYKIKPVMDHYMCL  531 (758)
Q Consensus       468 g~~~~A~~~~~~m~~~g~~p------~~~t~~~ll~a~~~~g~~~~a~~~~~~~----------~~~~~~~p~~~~~~~l  531 (758)
                      ++..+++++|..-..  ++|      +...|.-+..-|.+.|+++.|....-.-          .....-..+++.|...
T Consensus      1330 eklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyyka 1407 (1630)
T 1xi4_A         1330 QKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRA 1407 (1630)
T ss_pred             HHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHH
Confidence            445566666653322  333      3556777777888888888887321111          0011224567777777


Q ss_pred             HHHHHHcC---------------CHHHHHHHHHHcC
Q 004369          532 IDMFVRLG---------------CIEEAFDFIKKMD  552 (758)
Q Consensus       532 i~~~~~~g---------------~~~~A~~~~~~m~  552 (758)
                      ++-|...+               +.+++.++|++.+
T Consensus      1408 i~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~ 1443 (1630)
T 1xi4_A         1408 IQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 1443 (1630)
T ss_pred             HHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcC
Confidence            77777666               7777777777653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.71  E-value=2.4e-14  Score=157.05  Aligned_cols=381  Identities=9%  Similarity=-0.010  Sum_probs=242.9

Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHhcc----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhh----cCChHHHH
Q 004369          159 AIHVFLDMLEAGNYPTNVTLGTALTACSS----LESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYST----CGSLNSAI  230 (758)
Q Consensus       159 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~  230 (758)
                      ++..+....+.|   +...+..+-..+..    .++.+.|...+....+.|   +...+..|..+|..    .++.++|.
T Consensus        26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~   99 (490)
T 2xm6_A           26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV   99 (490)
T ss_dssp             CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            344444444433   44444444444444    455555555555555542   33444445555555    55555555


Q ss_pred             HHHhccCCC-CcchHHHHHHHHhh----CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHh
Q 004369          231 KAFNRIREK-NVMSWTTVIGACGE----NGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKL  305 (758)
Q Consensus       231 ~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  305 (758)
                      +.|++..+. +...+..|...|..    .+++++|+..|++..+.                                   
T Consensus       100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----------------------------------  144 (490)
T 2xm6_A          100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-----------------------------------  144 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------------------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----------------------------------
Confidence            555544332 33344444444444    44555555555554443                                   


Q ss_pred             CCCCchhHHHHHHHHHHh----cCCHHHHHHHHccCCC-CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhH
Q 004369          306 GYASNLRVRNSIMYLYLK----CGLVDEAQKLFDGMSH-VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLN  380 (758)
Q Consensus       306 g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~  380 (758)
                      |   +...+..|..+|..    .++.++|.+.|++..+ .+...+..+...|.+-..       ..++.++|+..|++..
T Consensus       145 ~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g-------~~~~~~~A~~~~~~a~  214 (490)
T 2xm6_A          145 G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLG-------VERNDAISAQWYRKSA  214 (490)
T ss_dssp             T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS-------SCCCHHHHHHHHHHHH
T ss_pred             C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC-------CCcCHHHHHHHHHHHH
Confidence            3   23334444444544    4555555555554432 233333333333332110       0566777777777776


Q ss_pred             hCCCCCCHHHHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHh----cCCHHHHHHHHHhcCC-
Q 004369          381 SSGMKPDLYTFSSILTICSR----LVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKK----CGRIERASRVFVEMST-  451 (758)
Q Consensus       381 ~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~----~g~~~~A~~~~~~~~~-  451 (758)
                      +.|   +...+..+...+..    .++.++|...+....+.+   +...+..|..+|..    .++.++|...|++..+ 
T Consensus       215 ~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~  288 (490)
T 2xm6_A          215 TSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ  288 (490)
T ss_dssp             HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred             HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence            654   34455555555553    677888888888877764   44566667777777    8899999999988764 


Q ss_pred             CChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc---cHHHHHHHHHHhhhhcCCCC
Q 004369          452 RTLISWTSMITGFANH-----SLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAG---MVYEALGYFEMMQKEYKIKP  523 (758)
Q Consensus       452 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p  523 (758)
                      .+...+..+...|...     ++.++|+..|++..+.|   +...+..+...+...|   ++++|.++|+...+.    .
T Consensus       289 ~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~  361 (490)
T 2xm6_A          289 GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----G  361 (490)
T ss_dssp             TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----T
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----C
Confidence            4667788888888887     89999999999998865   3455666666666545   889999999998873    3


Q ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhccCCC---Cch
Q 004369          524 VMDHYMCLIDMFVR----LGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRR----HGNMELGFYAAEQLLKLKPK---DCE  592 (758)
Q Consensus       524 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~  592 (758)
                      +...+..|..+|..    .+++++|.+.|++.-...+...+..|...+..    .++.++|...++++.+.+|+   ++.
T Consensus       362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~  441 (490)
T 2xm6_A          362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTEN  441 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHH
Confidence            56788889999988    89999999999988222367788889999988    89999999999999999854   677


Q ss_pred             hHHHHHHHhhh
Q 004369          593 SYAMLLDIFVS  603 (758)
Q Consensus       593 ~~~~l~~~~~~  603 (758)
                      ....|+.++..
T Consensus       442 a~~~l~~~~~~  452 (490)
T 2xm6_A          442 RNITEKKLTAK  452 (490)
T ss_dssp             HHHHHTTSCHH
T ss_pred             HHHHHHhcCHh
Confidence            77777666654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.70  E-value=3.5e-16  Score=164.76  Aligned_cols=261  Identities=10%  Similarity=-0.053  Sum_probs=213.3

Q ss_pred             CeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC
Q 004369          341 NLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFL  420 (758)
Q Consensus       341 ~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~  420 (758)
                      +...|..+...+.+           .|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +
T Consensus        64 ~~~~~~~~~~~~~~-----------~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p  130 (365)
T 4eqf_A           64 DWPGAFEEGLKRLK-----------EGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-P  130 (365)
T ss_dssp             TCTTHHHHHHHHHH-----------HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             chhHHHHHHHHHHH-----------CCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence            45567788888888           999999999999998753 3467788888999999999999999999988864 4


Q ss_pred             ChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCCh-------------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 004369          421 SDVVVGTALVNMYKKCGRIERASRVFVEMSTRTL-------------ISWTSMITGFANHSLSHQALQLFEDMLLAGVR-  486 (758)
Q Consensus       421 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~-------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-  486 (758)
                      .+..++..+...|.+.|++++|...|+++...++             ..+..+...+...|++++|+..|+++.+.... 
T Consensus       131 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  210 (365)
T 4eqf_A          131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM  210 (365)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS
T ss_pred             CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc
Confidence            5678899999999999999999999998763221             23344578899999999999999999986322 


Q ss_pred             CCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHH
Q 004369          487 PNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFI  564 (758)
Q Consensus       487 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll  564 (758)
                      ++..++..+...+...|++++|..+|+.+.+.  .+.+...|..+..+|.+.|++++|++.++++ ...| +..+|..+.
T Consensus       211 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  288 (365)
T 4eqf_A          211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG  288 (365)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            15778999999999999999999999999873  3345789999999999999999999999998 5556 578899999


Q ss_pred             HHHHHcCChhHHHHHHHHHhccCCC------------CchhHHHHHHHhhhCCCchhHHHHHHH
Q 004369          565 AGCRRHGNMELGFYAAEQLLKLKPK------------DCESYAMLLDIFVSAGRWEDVAVVKNL  616 (758)
Q Consensus       565 ~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~  616 (758)
                      ..+...|++++|...+++++++.|+            +...+..|+.++...|+.+.+.++.+.
T Consensus       289 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          289 ISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9999999999999999999998876            367899999999999999998877654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.69  E-value=3.2e-15  Score=151.30  Aligned_cols=239  Identities=8%  Similarity=-0.039  Sum_probs=198.7

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCH--HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDL--YTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERAS  443 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~  443 (758)
                      .|++.+|+..+++....  .|+.  .....+.+++...|+++.+...++.    .-+|+...+..+...|...|+.++|.
T Consensus        12 ~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~   85 (291)
T 3mkr_A           12 IGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV   85 (291)
T ss_dssp             TTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred             HHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence            89999999999876543  4543  3556678899999999998875533    24678888999999999999999999


Q ss_pred             HHHHhcC----CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhh
Q 004369          444 RVFVEMS----TR-TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKE  518 (758)
Q Consensus       444 ~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  518 (758)
                      +.++++.    .| +...+..+...|.+.|++++|++.+++      ..+...+..+...+.+.|++++|.+.|+.+.+.
T Consensus        86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  159 (291)
T 3mkr_A           86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ  159 (291)
T ss_dssp             HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            9999864    13 566788888999999999999999987      456778888899999999999999999999874


Q ss_pred             cCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh
Q 004369          519 YKIKPVMDH---YMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES  593 (758)
Q Consensus       519 ~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  593 (758)
                         .|+...   ..+++..+...|++++|..+|+++ ...| +...|+.+..++.+.|++++|+..++++++++|+++.+
T Consensus       160 ---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~  236 (291)
T 3mkr_A          160 ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET  236 (291)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence               355321   233445555669999999999999 3344 78889999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCchh-HHHHHHHhhh
Q 004369          594 YAMLLDIFVSAGRWED-VAVVKNLTRE  619 (758)
Q Consensus       594 ~~~l~~~~~~~g~~~~-a~~~~~~m~~  619 (758)
                      +..++.++...|++++ +.++++.+.+
T Consensus       237 l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          237 LINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999999999987 5688888876

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.69  E-value=7.5e-15  Score=148.54  Aligned_cols=268  Identities=8%  Similarity=-0.026  Sum_probs=212.8

Q ss_pred             HHHhcCCHHHHHHHHccCCCCCe----eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHH
Q 004369          320 LYLKCGLVDEAQKLFDGMSHVNL----VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSIL  395 (758)
Q Consensus       320 ~~~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll  395 (758)
                      -....|+++.|+..++.....++    ...-.+..+|..           .|++++|+..++.    .-.|+..++..+.
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~-----------~g~~~~al~~~~~----~~~~~~~a~~~la   72 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLA-----------QRKYGVVLDEIKP----SSAPELQAVRMFA   72 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-----------TTCHHHHHHHSCT----TSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHH-----------CCCHHHHHHHhcc----cCChhHHHHHHHH
Confidence            34456888888888877655332    233456677887           8888888876644    1356677888888


Q ss_pred             HHHhcccchHHHHHHHHHHHHcCC-CChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 004369          396 TICSRLVALEQGEQIHALTLKTGF-LSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQAL  474 (758)
Q Consensus       396 ~a~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  474 (758)
                      ..+...++.+.+.+.++.+...+. +.+..++..+...|.+.|++++|.+.|++  ..+...+..++..|.+.|++++|+
T Consensus        73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~  150 (291)
T 3mkr_A           73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLAR  150 (291)
T ss_dssp             HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            888888899999999998887764 44667778888999999999999999999  567889999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHH---HHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369          475 QLFEDMLLAGVRPNQVTF---VGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM  551 (758)
Q Consensus       475 ~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  551 (758)
                      +.|+++.+.  .|+....   ...+..+...|++++|..+|+++.+.  .+.+...++.+..++.+.|++++|.+.++++
T Consensus       151 ~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a  226 (291)
T 3mkr_A          151 KELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA  226 (291)
T ss_dssp             HHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999985  4664321   12233344569999999999999884  4567889999999999999999999999997


Q ss_pred             -CCCC-CHHHHHHHHHHHHHcCChhH-HHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHH
Q 004369          552 -DFEP-NEVIWSVFIAGCRRHGNMEL-GFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAV  612 (758)
Q Consensus       552 -~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~  612 (758)
                       ...| +..+|..++..+...|+.++ +.++++++++++|+++.+.    +...+.+.++++..
T Consensus       227 l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          227 LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL  286 (291)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence             5566 67889999999999999876 6789999999999997643    45566666666544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.69  E-value=9.1e-16  Score=161.57  Aligned_cols=252  Identities=14%  Similarity=0.037  Sum_probs=205.1

Q ss_pred             CCChhHHHH-HHHHhHhCCC-CC--CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHH
Q 004369          366 HNGGTEALS-IFSKLNSSGM-KP--DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIER  441 (758)
Q Consensus       366 ~g~~~~A~~-l~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~  441 (758)
                      .|++++|++ .|.+...... .|  +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence            788888988 8886654321 11  34567788889999999999999999999874 5577889999999999999999


Q ss_pred             HHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHH---------------HHHHHhcc
Q 004369          442 ASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV-TFVG---------------ALAACSNA  502 (758)
Q Consensus       442 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------ll~a~~~~  502 (758)
                      |...|+++.   +.+..+|..+...|...|++++|+..|+++....  |+.. .+..               .+..+...
T Consensus       117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (368)
T 1fch_A          117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD  194 (368)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence            999999865   4577899999999999999999999999999853  4322 1111               23344489


Q ss_pred             ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHH
Q 004369          503 GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAA  580 (758)
Q Consensus       503 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~  580 (758)
                      |++++|..+|+.+.+.....++...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  274 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY  274 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999875333335889999999999999999999999998 4455 5788999999999999999999999


Q ss_pred             HHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          581 EQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       581 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      ++++++.|+++..+..++.+|.+.|++++|...++.+.+.
T Consensus       275 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  314 (368)
T 1fch_A          275 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM  314 (368)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998763

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.68  E-value=2e-14  Score=159.37  Aligned_cols=430  Identities=10%  Similarity=0.080  Sum_probs=271.7

Q ss_pred             HHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 004369           97 HAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR--I-NVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYP  173 (758)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  173 (758)
                      ++..++.. +.+...|..++. +.+.|++++|+.+|+++.+  | +...|...+..+.+.|++++|..+|++....  .|
T Consensus         2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p   77 (530)
T 2ooe_A            2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL   77 (530)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred             hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence            34444443 557788888888 4778999999999988764  3 4556888899999999999999999998875  46


Q ss_pred             ChhhHHHHHHHh-cccCChHHHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHH
Q 004369          174 TNVTLGTALTAC-SSLESIRLGKQ----IHAYVVKY-QTED-DTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTT  246 (758)
Q Consensus       174 ~~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~  246 (758)
                      +...|...+... ...|+.+.|++    +++.+++. |..| +..+|...+....+...               ...   
T Consensus        78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~---------------~~~---  139 (530)
T 2ooe_A           78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA---------------VGS---  139 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC---------------CSS---
T ss_pred             ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC---------------ccc---
Confidence            766666655422 33455555544    66666543 4443 34556665555433100               000   


Q ss_pred             HHHHHhhCCChhhHHHHHHHHHHCCCCCCh---hhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 004369          247 VIGACGENGEAVQGLRFFSKMLSEGIQPNE---FTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLK  323 (758)
Q Consensus       247 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~  323 (758)
                          +.+.|++++|..+|++.+..   |+.   ..|..........+ ...+..+                   +.  .+
T Consensus       140 ----~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~-~~~~~~~-------------------l~--~~  190 (530)
T 2ooe_A          140 ----YAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGIN-IHLAKKM-------------------IE--DR  190 (530)
T ss_dssp             ----TTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHC-HHHHHHH-------------------HH--TT
T ss_pred             ----HHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhc-hhHHHHH-------------------HH--Hh
Confidence                01234444455555544441   211   11110000000000 0000000                   00  01


Q ss_pred             cCCHHHHHHHHcc-------CC------CCC--------eeechhHHHHHhhhchhhhchhhcCCCh----hHHHHHHHH
Q 004369          324 CGLVDEAQKLFDG-------MS------HVN--------LVTWNAMIAGHAQMMDLAKDDLSAHNGG----TEALSIFSK  378 (758)
Q Consensus       324 ~g~~~~A~~~~~~-------m~------~~~--------~~~~~~li~~~~~~~~~~~~~l~~~g~~----~~A~~l~~~  378 (758)
                      .++++.|..++..       +.      .|+        ...|...+.-...       .....++.    .+++.+|++
T Consensus       191 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~-------~~~~~~~~~~~~~~a~~~y~~  263 (530)
T 2ooe_A          191 SRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS-------NPLRTEDQTLITKRVMFAYEQ  263 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH-------CSSCCSCSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc-------CCccCCcchhHHHHHHHHHHH
Confidence            1223333332221       11      111        1233333321111       00002232    477888988


Q ss_pred             hHhCCCCCCHHHHHHHHHHHhc-------ccchH-------HHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHH
Q 004369          379 LNSSGMKPDLYTFSSILTICSR-------LVALE-------QGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASR  444 (758)
Q Consensus       379 m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~  444 (758)
                      ..... +-+...|......+.+       .|+++       .|..+++..++.-.+.+..++..++..+.+.|++++|..
T Consensus       264 al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~  342 (530)
T 2ooe_A          264 CLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS  342 (530)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence            87742 2355666666666654       68887       899999999874345578899999999999999999999


Q ss_pred             HHHhcC--CC-Ch-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HhccccHHHHHHHHHHhhhh
Q 004369          445 VFVEMS--TR-TL-ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAA-CSNAGMVYEALGYFEMMQKE  518 (758)
Q Consensus       445 ~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~  518 (758)
                      +|+++.  .| +. ..|..++..+.+.|+.++|.++|++..+.  .|+ ...|...... +...|++++|..+|+...+.
T Consensus       343 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~  420 (530)
T 2ooe_A          343 IYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK  420 (530)
T ss_dssp             HHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence            999876  23 33 58999999999999999999999999875  333 3333332222 33589999999999999874


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          519 YKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM----DFEPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       519 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      .  +.+...|..+++.+.+.|+.++|..+|++.    +..|+  ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus       421 ~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          421 Y--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             H--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             C--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            3  234788999999999999999999999998    23332  447999999999999999999999999998885

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.68  E-value=2.3e-15  Score=158.45  Aligned_cols=231  Identities=11%  Similarity=-0.016  Sum_probs=196.4

Q ss_pred             CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHH
Q 004369          387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITG  463 (758)
Q Consensus       387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~  463 (758)
                      +...+......+.+.|++++|..++..+++.. +.+..++..+...|.+.|++++|...|+++.   +.+..+|..+...
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            44557788889999999999999999999875 5578899999999999999999999999876   4567899999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 004369          464 FANHSLSHQALQLFEDMLLAGVRPNQ-----------VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLI  532 (758)
Q Consensus       464 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li  532 (758)
                      |...|++++|+..|+++.+.  .|+.           ..+..+...+...|++++|..+|+++.+...-.++...+..+.
T Consensus       143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            99999999999999999884  3432           2233457788999999999999999987533333688999999


Q ss_pred             HHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhH
Q 004369          533 DMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDV  610 (758)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  610 (758)
                      ..|.+.|++++|++.++++ ...| +..+|..+...+...|++++|...+++++++.|+++..+..++.+|...|++++|
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999998 4455 6889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhC
Q 004369          611 AVVKNLTREE  620 (758)
Q Consensus       611 ~~~~~~m~~~  620 (758)
                      ...++.+.+.
T Consensus       301 ~~~~~~al~~  310 (365)
T 4eqf_A          301 VSNFLTALSL  310 (365)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.67  E-value=2.3e-15  Score=155.39  Aligned_cols=261  Identities=9%  Similarity=-0.086  Sum_probs=217.7

Q ss_pred             eeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCC
Q 004369          342 LVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLS  421 (758)
Q Consensus       342 ~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~  421 (758)
                      ...|..+...+..           .|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.
T Consensus        21 ~~~~~~~a~~~~~-----------~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~   87 (327)
T 3cv0_A           21 HENPMEEGLSMLK-----------LANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK   87 (327)
T ss_dssp             SSCHHHHHHHHHH-----------TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             hHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC
Confidence            3455666677777           999999999999998753 3367788888889999999999999999998874 45


Q ss_pred             hHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---ChhHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHc
Q 004369          422 DVVVGTALVNMYKKCGRIERASRVFVEMSTR---TLISWTSM--------------IT-GFANHSLSHQALQLFEDMLLA  483 (758)
Q Consensus       422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~  483 (758)
                      +..++..+...|.+.|++++|.+.|+++...   +...+..+              .. .+...|++++|+..++++.+.
T Consensus        88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  167 (327)
T 3cv0_A           88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM  167 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence            6788999999999999999999999987632   33334333              22 367789999999999999986


Q ss_pred             CCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHH
Q 004369          484 GVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWS  561 (758)
Q Consensus       484 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~  561 (758)
                      . +.+...+..+...+...|++++|..+++.+.+.  .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|.
T Consensus       168 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  244 (327)
T 3cv0_A          168 N-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY  244 (327)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            3 335778888999999999999999999999873  2345788999999999999999999999998 4445 678899


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhccCCC------------CchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369          562 VFIAGCRRHGNMELGFYAAEQLLKLKPK------------DCESYAMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                      .+...+...|++++|...++++++..|+            ++..+..++.+|...|++++|..+++...
T Consensus       245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999998            78899999999999999999998876543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.67  E-value=3.3e-13  Score=148.01  Aligned_cols=354  Identities=10%  Similarity=0.012  Sum_probs=267.3

Q ss_pred             CcchHHHHHHHHhh----CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcc----cCChHHHHHHHHHHHHhCCCCch
Q 004369          240 NVMSWTTVIGACGE----NGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGT----MLSLRVGAQVHSLGIKLGYASNL  311 (758)
Q Consensus       240 ~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~  311 (758)
                      |...+..+...|..    .+++++|+..|++..+.|   +...+..+-..+..    .++.+.|.+.+....+.|   +.
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~  111 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP  111 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            33344444444444    555666666666655543   33344444444444    566666666666666654   45


Q ss_pred             hHHHHHHHHHHh----cCCHHHHHHHHccCCCC-CeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCC
Q 004369          312 RVRNSIMYLYLK----CGLVDEAQKLFDGMSHV-NLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP  386 (758)
Q Consensus       312 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p  386 (758)
                      ..+..|..+|..    .+++++|...|++..+. +...+..+...|......       .++.++|++.|++..+.|   
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~-------~~d~~~A~~~~~~a~~~~---  181 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGV-------TRDYVMAREWYSKAAEQG---  181 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS-------CCCHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC-------CCCHHHHHHHHHHHHHCC---
Confidence            556677778877    78999999999887553 444555555555431111       678999999999998875   


Q ss_pred             CHHHHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHh----cCCHHHHHHHHHhcCC-CChhHH
Q 004369          387 DLYTFSSILTICSR----LVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKK----CGRIERASRVFVEMST-RTLISW  457 (758)
Q Consensus       387 ~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~  457 (758)
                      +...+..+...+..    .++.++|...+....+.+   +...+..|..+|..    .+++++|...|++..+ .+...+
T Consensus       182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~  258 (490)
T 2xm6_A          182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQ  258 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            56677777777776    789999999999998876   56677788888886    8999999999998664 466778


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----ccHHHHHHHHHHhhhhcCCCCCHHHH
Q 004369          458 TSMITGFAN----HSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNA-----GMVYEALGYFEMMQKEYKIKPVMDHY  528 (758)
Q Consensus       458 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~  528 (758)
                      ..+...|..    .++.++|+..|++..+.|   +...+..+...+...     +++++|..+|+...+. +   +...+
T Consensus       259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~  331 (490)
T 2xm6_A          259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQ  331 (490)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHH
Confidence            888888888    899999999999998764   445666666667666     8999999999999873 3   45677


Q ss_pred             HHHHHHHHHcC---CHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhccCCCCchhHHHHHHHh
Q 004369          529 MCLIDMFVRLG---CIEEAFDFIKKMDFEPNEVIWSVFIAGCRR----HGNMELGFYAAEQLLKLKPKDCESYAMLLDIF  601 (758)
Q Consensus       529 ~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  601 (758)
                      ..|..+|.+.|   +.++|++.|++.-...+...+..|...+..    .++.++|...++++.+.+  ++..+..|+.+|
T Consensus       332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y  409 (490)
T 2xm6_A          332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIY  409 (490)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Confidence            88888888877   889999999988222478889999999998    899999999999998865  578999999999


Q ss_pred             hh----CCCchhHHHHHHHhhhCC
Q 004369          602 VS----AGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       602 ~~----~g~~~~a~~~~~~m~~~~  621 (758)
                      ..    .+++++|...++...+.+
T Consensus       410 ~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          410 YYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHCC
Confidence            98    899999999999998865

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.66  E-value=1.1e-16  Score=177.73  Aligned_cols=128  Identities=14%  Similarity=0.122  Sum_probs=114.0

Q ss_pred             CCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004369          419 FLSDVVVGTALVNMYKKCGRIERASRVFVEMS-------TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVT  491 (758)
Q Consensus       419 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  491 (758)
                      ...-..+||+||++|+++|++++|.++|++|.       .||+++||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT  202 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS  202 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence            44567799999999999999999999997753       68999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccc-HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004369          492 FVGALAACSNAGM-VYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDF  547 (758)
Q Consensus       492 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  547 (758)
                      |+++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....|.+-++...++
T Consensus       203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv  258 (1134)
T 3spa_A          203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV  258 (1134)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence            9999999999997 57899999999985 9999999999999888777555444444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.66  E-value=3e-14  Score=155.62  Aligned_cols=370  Identities=12%  Similarity=0.056  Sum_probs=211.0

Q ss_pred             hhHHHHHHHHHhhcCChHHHHHHHhccCC-----------C-CcchHHHHHHHHhhCCChhhHHHHHHHHHHCC---CCC
Q 004369          210 TSVGNSLCSLYSTCGSLNSAIKAFNRIRE-----------K-NVMSWTTVIGACGENGEAVQGLRFFSKMLSEG---IQP  274 (758)
Q Consensus       210 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p  274 (758)
                      ...||.|...|...|+.++|.+.|++..+           + ..++|+.+...|...|++++|...|++.....   ..|
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            45667777777777777777776654321           1 23456666666666666666666666554310   000


Q ss_pred             ChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHHHccCCC--C-CeeechhHH
Q 004369          275 NEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKC--GLVDEAQKLFDGMSH--V-NLVTWNAMI  349 (758)
Q Consensus       275 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~--~-~~~~~~~li  349 (758)
                      .                               -.....++..+..++.+.  +++++|...|++..+  | +...+..+.
T Consensus       131 ~-------------------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~  179 (472)
T 4g1t_A          131 Y-------------------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLA  179 (472)
T ss_dssp             S-------------------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             c-------------------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            0                               001122333333333333  346666666665532  2 222333333


Q ss_pred             HHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHh----cccchHHHHHHHHHHHHcCCCChHHH
Q 004369          350 AGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICS----RLVALEQGEQIHALTLKTGFLSDVVV  425 (758)
Q Consensus       350 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~~~~~~~~~  425 (758)
                      ..+.+        +...++.++|++.|++..+.. +.+...+..+...+.    ..++.++|.+.+....+.. +.+..+
T Consensus       180 ~~~~~--------l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~  249 (472)
T 4g1t_A          180 IASYR--------LDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDV  249 (472)
T ss_dssp             HHHHH--------HHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHH
T ss_pred             HHHHH--------hcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHH
Confidence            33222        111567777888777776542 223444444433333    3456777888887777654 445667


Q ss_pred             HhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHc
Q 004369          426 GTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFAN-------------------HSLSHQALQLFEDMLLA  483 (758)
Q Consensus       426 ~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~  483 (758)
                      +..+...|.+.|++++|...|++..   +.+..+|..+...|..                   .+..++|+..|++..+.
T Consensus       250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  329 (472)
T 4g1t_A          250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA  329 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence            7788888888888888888888765   3345566666555432                   23367788888888774


Q ss_pred             CCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH--HHHHHHHH-HHHHcCCHHHHHHHHHHc-CCCCCHHH
Q 004369          484 GVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM--DHYMCLID-MFVRLGCIEEAFDFIKKM-DFEPNEVI  559 (758)
Q Consensus       484 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~  559 (758)
                      . +.+..++..+...+...|++++|...|+++.+. ...|..  ..+..+.. .+...|+.++|++.+++. .+.|+...
T Consensus       330 ~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~  407 (472)
T 4g1t_A          330 N-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE  407 (472)
T ss_dssp             C-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred             C-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence            2 223556777888899999999999999998762 222221  12333333 234678999999999887 67776544


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEE
Q 004369          560 WSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWI  631 (758)
Q Consensus       560 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~  631 (758)
                      +...         .+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-......+|+
T Consensus       408 ~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          408 KEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             HHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred             HHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence            3332         34456778888999999999999999999999999999999999988665433334443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.65  E-value=2.2e-16  Score=175.49  Aligned_cols=148  Identities=8%  Similarity=-0.034  Sum_probs=126.2

Q ss_pred             CCChhHHHHHHHHHhhcCChHHHHHHHhccC-------CCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhH
Q 004369          207 EDDTSVGNSLCSLYSTCGSLNSAIKAFNRIR-------EKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTL  279 (758)
Q Consensus       207 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  279 (758)
                      ..-..+||+||++|+++|++++|.++|++|.       .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            3345689999999999999999999997764       489999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC-----CeeechhHHHHHh
Q 004369          280 TSISSVCGTMLSL-RVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHV-----NLVTWNAMIAGHA  353 (758)
Q Consensus       280 ~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~  353 (758)
                      +++|.++++.|.. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++...+++..+..+     .+.+.+.|...|.
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s  283 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA  283 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence            9999999999985 789999999999999999999999999888877777776666555431     2334445555665


Q ss_pred             h
Q 004369          354 Q  354 (758)
Q Consensus       354 ~  354 (758)
                      +
T Consensus       284 ~  284 (1134)
T 3spa_A          284 K  284 (1134)
T ss_dssp             C
T ss_pred             c
Confidence            5

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.63  E-value=2.5e-14  Score=156.17  Aligned_cols=381  Identities=10%  Similarity=-0.047  Sum_probs=223.6

Q ss_pred             ChhhHHHHHHHhcccCChHHHHHHHHHHHHh-----C--CCC-ChhHHHHHHHHHhhcCChHHHHHHHhccCC-------
Q 004369          174 TNVTLGTALTACSSLESIRLGKQIHAYVVKY-----Q--TED-DTSVGNSLCSLYSTCGSLNSAIKAFNRIRE-------  238 (758)
Q Consensus       174 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-------  238 (758)
                      ....|+.+-..+...|+.++|.+.+..+++.     +  ..| ...+|+.+...|...|++++|...|++..+       
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3556888888899999999999999988763     1  123 345788999999999999999999886642       


Q ss_pred             ---C-CcchHHHHHHHHhh--CCChhhHHHHHHHHHHCCCCCChh-hHHHHHHH---HcccCChHHHHHHHHHHHHhCCC
Q 004369          239 ---K-NVMSWTTVIGACGE--NGEAVQGLRFFSKMLSEGIQPNEF-TLTSISSV---CGTMLSLRVGAQVHSLGIKLGYA  308 (758)
Q Consensus       239 ---~-~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~  308 (758)
                         + ...+++.+..++..  .+++++|++.|++..+.  .|+.. .+..+..+   +...++.+.|.+.+...++.. +
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p  206 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P  206 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence               1 12345555545544  45789999999998874  45543 33333222   345567777888888887765 3


Q ss_pred             CchhHHHHHHHHHHh----cCCHHHHHHHHccCCC--C-CeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHh
Q 004369          309 SNLRVRNSIMYLYLK----CGLVDEAQKLFDGMSH--V-NLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNS  381 (758)
Q Consensus       309 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~  381 (758)
                      .+..++..+...+..    .|+.++|.+.+++...  | +...|..+...|..           .|++++|+..|++..+
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~-----------~~~~~~A~~~~~~al~  275 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR-----------KDEPDKAIELLKKALE  275 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH-----------cCchHHHHHHHHHHHH
Confidence            445555555544444    3456677777776654  2 23445666666666           7777777777777765


Q ss_pred             CCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHH
Q 004369          382 SGMKPD-LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISW  457 (758)
Q Consensus       382 ~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~  457 (758)
                      .  .|+ ..++..+...+...+....         ..       ............+..+.|...|++..   ..+..+|
T Consensus       276 ~--~p~~~~~~~~lg~~y~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  337 (472)
T 4g1t_A          276 Y--IPNNAYLHCQIGCCYRAKVFQVM---------NL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVC  337 (472)
T ss_dssp             H--STTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCH
T ss_pred             h--CCChHHHHHHHHHHHHHHHHHhh---------hH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhh
Confidence            4  333 3333333332221110000         00       00011111122234667777777654   4456789


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 004369          458 TSMITGFANHSLSHQALQLFEDMLLAGVRPNQV--TFVGALA-ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDM  534 (758)
Q Consensus       458 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~  534 (758)
                      ..+...|...|++++|++.|++..+....|...  .+..+.. ...+.|+.++|+..|++..+   +.|+.......   
T Consensus       338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---  411 (472)
T 4g1t_A          338 SILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---  411 (472)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---
T ss_pred             hhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---
Confidence            999999999999999999999999864443321  2222222 34578999999999998865   45654332222   


Q ss_pred             HHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 004369          535 FVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLL  598 (758)
Q Consensus       535 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  598 (758)
                            .+.+.+++++. ...| +..+|..|...+...|++++|++.++++++++|.+|.+...++
T Consensus       412 ------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          412 ------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             ------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred             ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence                  23344445444 3345 6788999999999999999999999999999998887766554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.59  E-value=6.2e-14  Score=135.27  Aligned_cols=193  Identities=16%  Similarity=0.103  Sum_probs=157.1

Q ss_pred             CChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 004369          420 LSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGA  495 (758)
Q Consensus       420 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l  495 (758)
                      +++...+..+...|.+.|++++|...|++..   +.+...|..+...+.+.|++++|+..|++..+.  .|+ ...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence            4566778888889999999999999999865   346678999999999999999999999999984  565 6678888


Q ss_pred             HHHHhcc-----------ccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHH
Q 004369          496 LAACSNA-----------GMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSV  562 (758)
Q Consensus       496 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~  562 (758)
                      ..++...           |++++|...++...+.   .| +...+..+..+|...|++++|++.|++. ....+...|..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence            8889999           9999999999999863   34 4778899999999999999999999998 22268889999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369          563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLT  617 (758)
Q Consensus       563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  617 (758)
                      +...+...|++++|...++++++++|+++..+..++.+|...|++++|...++..
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999887764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.59  E-value=1.2e-13  Score=136.90  Aligned_cols=218  Identities=7%  Similarity=-0.013  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---C-------hhHHH
Q 004369          389 YTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR---T-------LISWT  458 (758)
Q Consensus       389 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~-------~~~~~  458 (758)
                      ..+..+...+...|++++|...+..+.+..  .+..++..+...|...|++++|...|++....   +       ...|.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            456667778888999999999999988877  67888999999999999999999999887631   1       57889


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHc
Q 004369          459 SMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRL  538 (758)
Q Consensus       459 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~  538 (758)
                      .+...|...|++++|+..|+++.+.  .|+.       ..+...|++++|...++.+.+  ..+.+...+..+...+...
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHh
Confidence            9999999999999999999999984  5553       346677899999999999876  2233467888999999999


Q ss_pred             CCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHH
Q 004369          539 GCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNL  616 (758)
Q Consensus       539 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  616 (758)
                      |++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|...++.
T Consensus       153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999998 4445 6788999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhh
Q 004369          617 TRE  619 (758)
Q Consensus       617 m~~  619 (758)
                      ..+
T Consensus       233 a~~  235 (258)
T 3uq3_A          233 ART  235 (258)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.57  E-value=1.2e-13  Score=142.30  Aligned_cols=229  Identities=9%  Similarity=-0.017  Sum_probs=194.2

Q ss_pred             CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHH
Q 004369          387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITG  463 (758)
Q Consensus       387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~  463 (758)
                      +...+......+...|++++|..++..+.+.. +.+...+..+...|.+.|++++|...|+++.   +.+...|..+...
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   98 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   98 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence            33455666778888999999999999998864 4577888899999999999999999999875   4467889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH--------------HH-HHhccccHHHHHHHHHHhhhhcCCCCCHHH
Q 004369          464 FANHSLSHQALQLFEDMLLAGVRPNQV-TFVGA--------------LA-ACSNAGMVYEALGYFEMMQKEYKIKPVMDH  527 (758)
Q Consensus       464 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l--------------l~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~  527 (758)
                      |...|++++|+..++++.+.  .|+.. .+..+              .. .+...|++++|..+++.+.+.  .+.+...
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~  174 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQL  174 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHH
Confidence            99999999999999999985  34422 22222              22 378899999999999999873  2346788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC
Q 004369          528 YMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG  605 (758)
Q Consensus       528 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  605 (758)
                      +..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|...|
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g  254 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS  254 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999998 4445 57889999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHhhhC
Q 004369          606 RWEDVAVVKNLTREE  620 (758)
Q Consensus       606 ~~~~a~~~~~~m~~~  620 (758)
                      ++++|.+.++.+.+.
T Consensus       255 ~~~~A~~~~~~a~~~  269 (327)
T 3cv0_A          255 QYDLAAKQLVRAIYM  269 (327)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHh
Confidence            999999999998764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.54  E-value=2.9e-13  Score=135.72  Aligned_cols=240  Identities=7%  Similarity=-0.121  Sum_probs=195.9

Q ss_pred             CCChhHHHHHHHHhHhCCCC--C-CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMK--P-DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERA  442 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~--p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A  442 (758)
                      .|++++|+..|+++.+....  | +..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            78999999999999886321  2 45678888889999999999999999999875 45688999999999999999999


Q ss_pred             HHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhc
Q 004369          443 SRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEY  519 (758)
Q Consensus       443 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~  519 (758)
                      ...|++..   +.+...|..+...|...|++++|+..|+++.+.  .|+.......+..+...|++++|...++..... 
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-  173 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-  173 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence            99999876   346789999999999999999999999999984  566555555566667889999999999888764 


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh
Q 004369          520 KIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES  593 (758)
Q Consensus       520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  593 (758)
                       .+++...+ .++..+...++.++|.+.+++. ...|+     ..+|..+...+...|++++|...++++++.+|++...
T Consensus       174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  251 (275)
T 1xnf_A          174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  251 (275)
T ss_dssp             -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence             23444444 4777788888999999999987 44342     5778999999999999999999999999999987554


Q ss_pred             HHHHHHHhhhCCCchhHHHHH
Q 004369          594 YAMLLDIFVSAGRWEDVAVVK  614 (758)
Q Consensus       594 ~~~l~~~~~~~g~~~~a~~~~  614 (758)
                      +   +.++...|++++|.+.+
T Consensus       252 ~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          252 H---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             H---HHHHHHHHHHHHC----
T ss_pred             H---HHHHHHHHHHHhhHHHH
Confidence            4   66788888988887654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.52  E-value=2.6e-13  Score=134.59  Aligned_cols=235  Identities=11%  Similarity=-0.019  Sum_probs=195.7

Q ss_pred             echhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCC--CC
Q 004369          344 TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGF--LS  421 (758)
Q Consensus       344 ~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~--~~  421 (758)
                      .|..+...+..           .|++++|+..|++..+..  .+...+..+..++...|++++|...+..+.+...  .+
T Consensus         7 ~~~~~g~~~~~-----------~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   73 (258)
T 3uq3_A            7 KEKAEGNKFYK-----------ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA   73 (258)
T ss_dssp             HHHHHHHHHHH-----------TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHH-----------hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc
Confidence            35556667777           999999999999998876  7788899999999999999999999998877431  11


Q ss_pred             h----HHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 004369          422 D----VVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGAL  496 (758)
Q Consensus       422 ~----~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll  496 (758)
                      +    ..++..+...|.+.|++++|...|++....+..     ...+...|++++|+..++++...  .|+ ...+..+.
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~  146 (258)
T 3uq3_A           74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEG  146 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHH
Confidence            1    578899999999999999999999987632111     24566778899999999999884  454 56778888


Q ss_pred             HHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChh
Q 004369          497 AACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNME  574 (758)
Q Consensus       497 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~  574 (758)
                      ..+...|++++|...++.+.+.  .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+++
T Consensus       147 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~  224 (258)
T 3uq3_A          147 KEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA  224 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHH
Confidence            8999999999999999999873  2345788999999999999999999999998 4455 5788999999999999999


Q ss_pred             HHHHHHHHHhccC------CCCchhHHHHHHH
Q 004369          575 LGFYAAEQLLKLK------PKDCESYAMLLDI  600 (758)
Q Consensus       575 ~a~~~~~~~~~~~------p~~~~~~~~l~~~  600 (758)
                      +|...+++++++.      |++...+..|..+
T Consensus       225 ~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          225 SALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            9999999999998      8877776666543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.48  E-value=3.4e-12  Score=123.46  Aligned_cols=197  Identities=10%  Similarity=0.025  Sum_probs=155.6

Q ss_pred             ChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004369          421 SDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALA  497 (758)
Q Consensus       421 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  497 (758)
                      .+..++..+...|...|++++|.+.|+++.   ..+...|..+...|...|++++|++.|+++.+.. +.+..++..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            356667777888888888888888887754   3456778888888888888888888888887752 234667777888


Q ss_pred             HHhcc-ccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCh
Q 004369          498 ACSNA-GMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNM  573 (758)
Q Consensus       498 a~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~  573 (758)
                      .+... |++++|..+++.+.+ .+..|+ ...+..+...+...|++++|++.++++ ...| +...|..+...+...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence            88888 888888888888876 333443 567788888888888888888888887 4444 577788888888888999


Q ss_pred             hHHHHHHHHHhccCC-CCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          574 ELGFYAAEQLLKLKP-KDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       574 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ++|...++++++..| +++..+..++..+...|+.++|..+++.+.+
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            999999988888888 8888888888888888888888888888765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.48  E-value=2.7e-12  Score=126.88  Aligned_cols=196  Identities=9%  Similarity=-0.052  Sum_probs=147.0

Q ss_pred             HHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004369          423 VVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAAC  499 (758)
Q Consensus       423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  499 (758)
                      ...+..+...|...|++++|.+.|+++.   ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            4556667777777777777777777654   3356677777788888888888888888877752 22456677777778


Q ss_pred             hccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 004369          500 SNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELG  576 (758)
Q Consensus       500 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a  576 (758)
                      ...|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            888888888888888765 23444 3566777888888888888888888876 3334 567778888888888888888


Q ss_pred             HHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          577 FYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       577 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      ...++++++..|++...+..++.+|...|++++|.+.++.+.+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888877663

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.48  E-value=1.3e-12  Score=130.80  Aligned_cols=235  Identities=13%  Similarity=-0.001  Sum_probs=177.4

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCh--HHHHhHHhhhHHhcCCHHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSD--VVVGTALVNMYKKCGRIERAS  443 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~Li~~y~~~g~~~~A~  443 (758)
                      .|++++|+..|++..+.. +.+...+..+...+...|++++|...+..+.+.+..++  ...+..+...|.+.|++++|.
T Consensus        16 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~   94 (272)
T 3u4t_A           16 NNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI   94 (272)
T ss_dssp             TTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence            999999999999998753 22344777788888999999999999999888432222  334788899999999999999


Q ss_pred             HHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhc
Q 004369          444 RVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEY  519 (758)
Q Consensus       444 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~  519 (758)
                      +.|++..   +.+...|..+...|...|++++|+..|++..+.  .|+ ...+..+...+...+++++|.+.|+.+.+. 
T Consensus        95 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-  171 (272)
T 3u4t_A           95 QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL-  171 (272)
T ss_dssp             HHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            9998865   446678999999999999999999999988774  454 455555552444556999999999998763 


Q ss_pred             CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHc----CCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHhcc
Q 004369          520 KIKPVMDHYMCLIDMFVRLGC---IEEAFDFIKKM----DFEPN------EVIWSVFIAGCRRHGNMELGFYAAEQLLKL  586 (758)
Q Consensus       520 ~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  586 (758)
                       .+.+...+..+...+...|+   +++|...++++    ...|+      ..+|..+...+...|++++|...+++++++
T Consensus       172 -~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          172 -KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL  250 (272)
T ss_dssp             -STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence             22336777778888888887   77777777766    22243      246778888889999999999999999999


Q ss_pred             CCCCchhHHHHHHHhhhCC
Q 004369          587 KPKDCESYAMLLDIFVSAG  605 (758)
Q Consensus       587 ~p~~~~~~~~l~~~~~~~g  605 (758)
                      +|+++.+...+..+....+
T Consensus       251 ~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          251 DPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             CTTCHHHHHHHC-------
T ss_pred             CccHHHHHHHhhhhhcccc
Confidence            9999888888776665544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.47  E-value=8.7e-12  Score=123.19  Aligned_cols=206  Identities=12%  Similarity=-0.015  Sum_probs=176.8

Q ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHH
Q 004369          388 LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGF  464 (758)
Q Consensus       388 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~  464 (758)
                      ...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.   ..+...|..+...|
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence            4566777788889999999999999988864 4567888999999999999999999999865   44678899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004369          465 ANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEE  543 (758)
Q Consensus       465 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  543 (758)
                      ...|++++|++.|+++.+.+..|+ ...+..+...+...|++++|..+++.+.+.  .+.+...+..+...|.+.|++++
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999988445564 567788888999999999999999999874  23457889999999999999999


Q ss_pred             HHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369          544 AFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM  596 (758)
Q Consensus       544 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  596 (758)
                      |.+.++++ ...| +...+..+...+...|+.++|...++++++..|+++.....
T Consensus       194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  248 (252)
T 2ho1_A          194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF  248 (252)
T ss_dssp             HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            99999998 5555 67778889999999999999999999999999998765543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.46  E-value=1.4e-12  Score=128.13  Aligned_cols=192  Identities=13%  Similarity=0.149  Sum_probs=87.0

Q ss_pred             HHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 004369          425 VGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN  501 (758)
Q Consensus       425 ~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  501 (758)
                      .+..+...|.+.|++++|...|+++.   ..+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+..
T Consensus        25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~  103 (243)
T 2q7f_A           25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV  103 (243)
T ss_dssp             -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence            33444444444555555555544432   1233444455555555555555555555554431 1123444444455555


Q ss_pred             cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 004369          502 AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYA  579 (758)
Q Consensus       502 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~  579 (758)
                      .|++++|.++++.+.+.  .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|...
T Consensus       104 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  181 (243)
T 2q7f_A          104 KEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ  181 (243)
T ss_dssp             TTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             hccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            55555555555555442  1223444555555555555555555555554 2222 344455555555555555555555


Q ss_pred             HHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          580 AEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       580 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ++++++..|+++..+..++.+|...|++++|.+.++.+.+
T Consensus       182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence            5555555555555555555555555555555555555544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.46  E-value=1.4e-12  Score=128.01  Aligned_cols=215  Identities=12%  Similarity=0.075  Sum_probs=165.6

Q ss_pred             CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHH
Q 004369          385 KPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMI  461 (758)
Q Consensus       385 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li  461 (758)
                      .....++..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|++..   ..+...|..+.
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la   98 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG   98 (243)
T ss_dssp             ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence            4455677778888899999999999999998854 4568888999999999999999999999865   44678899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCH
Q 004369          462 TGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCI  541 (758)
Q Consensus       462 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  541 (758)
                      ..|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..+++.+.+.  .+.+...+..+...|.+.|++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGML  175 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999863 345778888888999999999999999999873  234578899999999999999


Q ss_pred             HHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh
Q 004369          542 EEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS  603 (758)
Q Consensus       542 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  603 (758)
                      ++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|+++..+..+..+...
T Consensus       176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH  239 (243)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence            9999999988 4444 577899999999999999999999999999999998888777655443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.45  E-value=8.2e-12  Score=134.78  Aligned_cols=366  Identities=8%  Similarity=0.018  Sum_probs=193.1

Q ss_pred             hcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCh---HHHHHHHhccCCCCcchHHHHHHHHhhCC-----C
Q 004369          185 CSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSL---NSAIKAFNRIREKNVMSWTTVIGACGENG-----E  256 (758)
Q Consensus       185 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~  256 (758)
                      +.+.|++++|.+++..+.+.|   +...+..|..+|...|+.   ++|...|++..+.+...+..|...+...|     +
T Consensus        13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~   89 (452)
T 3e4b_A           13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE   89 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence            334455555555555555544   222333444555556666   77777777776666666666666454444     6


Q ss_pred             hhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH----HH
Q 004369          257 AVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSL---RVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLV----DE  329 (758)
Q Consensus       257 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~  329 (758)
                      +++|+..|++..+.|...   .+..+...+...+..   ..+.+.+......|.   ......|..+|...+.+    +.
T Consensus        90 ~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~  163 (452)
T 3e4b_A           90 HHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDD  163 (452)
T ss_dssp             HHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHH
T ss_pred             HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHH
Confidence            677888888877765322   333344444333221   223334444443332   33444555555555532    23


Q ss_pred             HHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhccc---chHH
Q 004369          330 AQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLV---ALEQ  406 (758)
Q Consensus       330 A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~---~~~~  406 (758)
                      +..+++.....++..+..+..                                              .+...|   +.++
T Consensus       164 a~~~~~~a~~~~~~a~~~Lg~----------------------------------------------~~~~~g~~~~~~~  197 (452)
T 3e4b_A          164 VERICKAALNTTDICYVELAT----------------------------------------------VYQKKQQPEQQAE  197 (452)
T ss_dssp             HHHHHHHHTTTCTTHHHHHHH----------------------------------------------HHHHTTCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHH----------------------------------------------HHHHcCCcccHHH
Confidence            333333333333333333333                                              444444   4555


Q ss_pred             HHHHHHHHHHcCCCChHHHHhHHhhhHHhc----CCHHHHHHHHHhcCCCChhHHHHHHHH-H--HhcCCHHHHHHHHHH
Q 004369          407 GEQIHALTLKTGFLSDVVVGTALVNMYKKC----GRIERASRVFVEMSTRTLISWTSMITG-F--ANHSLSHQALQLFED  479 (758)
Q Consensus       407 a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~  479 (758)
                      |...+....+.| +++...+..|..+|...    ++.++|.+.|++....+...+..|... |  ...++.++|++.|++
T Consensus       198 A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~  276 (452)
T 3e4b_A          198 LLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDN  276 (452)
T ss_dssp             HHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence            555555555544 23333334455555443    678888888877663355667777666 3  457888899999988


Q ss_pred             HHHcCCCCCHHHHHHHHHHHhccc-----cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 004369          480 MLLAGVRPNQVTFVGALAACSNAG-----MVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR----LGCIEEAFDFIKK  550 (758)
Q Consensus       480 m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~  550 (758)
                      ..+.|   +...+..+...|. .|     ++++|.++|+...     .-+...+..|..+|..    ..++++|.+.|++
T Consensus       277 Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~  347 (452)
T 3e4b_A          277 GRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT  347 (452)
T ss_dssp             HHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred             HHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence            88776   4555555555555 45     8899999888775     3456677777777766    3388999999988


Q ss_pred             cCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhccCCCCchhHHHHHHHhh--hCCCchhHHHHHHHh
Q 004369          551 MDFEPNEVIWSVFIAGCRR----HGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV--SAGRWEDVAVVKNLT  617 (758)
Q Consensus       551 m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m  617 (758)
                      .-..-+......|...|..    .+|.++|...++++.+.++.+  ....+..+..  ..++.++|..+.+.-
T Consensus       348 Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~  418 (452)
T 3e4b_A          348 AARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQE  418 (452)
T ss_dssp             HHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            7222244455666666653    458899999999998877653  3344444432  334555565555543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.44  E-value=1.2e-11  Score=133.53  Aligned_cols=183  Identities=12%  Similarity=0.068  Sum_probs=97.8

Q ss_pred             HHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh---HHHHHHHccCCCCCcchHHHHHHHHHhCC--
Q 004369           80 LLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNM---EEAQKVFDNLPRINVVSWTSLISGYVQNS--  154 (758)
Q Consensus        80 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g--  154 (758)
                      +...+.+.|++++|.+++....+.|. ++  .+..|-.+|...|+.   ++|.+.|++..+.+...+..|...+...+  
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~   85 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELGY-SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA   85 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTC-CT--GGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence            34445567788888888888887762 32  334455566667777   88888888877667777777777566655  


Q ss_pred             ---CchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcC----
Q 004369          155 ---QPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESI---RLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCG----  224 (758)
Q Consensus       155 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g----  224 (758)
                         ++++|+..|++..+.|..   ..+..+-..+...+..   ..+.+.+......|   +......|..+|...+    
T Consensus        86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~  159 (452)
T 3e4b_A           86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ  159 (452)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred             CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence               678899999888886632   2555555555444332   22344444444433   3455556666666666    


Q ss_pred             ChHHHHHHHhccCCCCcchHHHHHHHHhhCC---ChhhHHHHHHHHHHCC
Q 004369          225 SLNSAIKAFNRIREKNVMSWTTVIGACGENG---EAVQGLRFFSKMLSEG  271 (758)
Q Consensus       225 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g  271 (758)
                      ..+.|..+++.....+...+..|...|.+.|   +.++|++.|++..+.|
T Consensus       160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g  209 (452)
T 3e4b_A          160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG  209 (452)
T ss_dssp             GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence            3445555666666666667777777777777   7777777777776655

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.43  E-value=4.6e-12  Score=132.47  Aligned_cols=225  Identities=12%  Similarity=0.092  Sum_probs=190.1

Q ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCC-HHHHHHHHHhcC---CCChhHHHHHHHHH
Q 004369          389 YTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGR-IERASRVFVEMS---TRTLISWTSMITGF  464 (758)
Q Consensus       389 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~  464 (758)
                      ..|..+...+...|++++|...+..+++.. +.+..+|+.+...|.+.|+ +++|+..|++..   ..+...|+.+...+
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            456666677788899999999999999875 5568889999999999997 999999999876   45778999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH-cCCHH
Q 004369          465 ANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR-LGCIE  542 (758)
Q Consensus       465 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~  542 (758)
                      ...|++++|+..|+++++.  .|+ ...|..+..++.+.|++++|+..|+++.+.  -+-+...|+.+..+|.+ .|..+
T Consensus       177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence            9999999999999999984  554 678888989999999999999999999873  23357889999999999 66657


Q ss_pred             HH-----HHHHHHc-CCCC-CHHHHHHHHHHHHHcC--ChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC--------
Q 004369          543 EA-----FDFIKKM-DFEP-NEVIWSVFIAGCRRHG--NMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG--------  605 (758)
Q Consensus       543 ~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------  605 (758)
                      +|     ++.+++. ...| +...|..+...+...|  ++++|...++++ +.+|+++..+..|+++|.+.|        
T Consensus       253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~  331 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE  331 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence            77     4777776 6667 6778999999998888  689999999998 889999999999999999875        


Q ss_pred             -CchhHHHHHHHh-hh
Q 004369          606 -RWEDVAVVKNLT-RE  619 (758)
Q Consensus       606 -~~~~a~~~~~~m-~~  619 (758)
                       .+++|.++++.+ .+
T Consensus       332 ~~~~~A~~~~~~l~~~  347 (382)
T 2h6f_A          332 DILNKALELCEILAKE  347 (382)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence             258899999887 54

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.43  E-value=1.8e-11  Score=118.27  Aligned_cols=208  Identities=12%  Similarity=0.014  Sum_probs=176.2

Q ss_pred             CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHH
Q 004369          387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITG  463 (758)
Q Consensus       387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~  463 (758)
                      +...+..+...+...|+++.|.+.+..+.+.. +.+..++..+...|...|++++|.+.|++..   ..+...|..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~   85 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            45567777888899999999999999988864 4467788899999999999999999999875   4467889999999


Q ss_pred             HHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCH
Q 004369          464 FANH-SLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCI  541 (758)
Q Consensus       464 ~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  541 (758)
                      |... |++++|+..|+++.+.+..|+ ...+..+..++...|++++|...++.+.+.  .+.+...+..+...|.+.|++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence            9999 999999999999998444455 567888888999999999999999999873  233478889999999999999


Q ss_pred             HHHHHHHHHc-CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369          542 EEAFDFIKKM-DFEP--NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML  597 (758)
Q Consensus       542 ~~A~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  597 (758)
                      ++|.+.++++ ...|  +...|..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            9999999988 3333  566777788888999999999999999999999988776655

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.43  E-value=6.4e-11  Score=118.61  Aligned_cols=223  Identities=8%  Similarity=-0.066  Sum_probs=186.9

Q ss_pred             CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHh----cCCHHHHHHHHHhcCC-CChhHHHHHH
Q 004369          387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKK----CGRIERASRVFVEMST-RTLISWTSMI  461 (758)
Q Consensus       387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li  461 (758)
                      +..++..+...+...|++++|...+....+.   .+...+..+...|..    .|++++|...|++..+ .+...+..+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg   81 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG   81 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4455666677778888999999999888883   355677788888998    9999999999988663 3677888899


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 004369          462 TGFAN----HSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN----AGMVYEALGYFEMMQKEYKIKPVMDHYMCLID  533 (758)
Q Consensus       462 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~  533 (758)
                      ..|..    .+++++|+..|++..+.+   +...+..+...+..    .+++++|..+|+...+. +   +...+..+..
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~  154 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS  154 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence            99999    999999999999998875   66778888888888    89999999999998873 3   5667788888


Q ss_pred             HHHH----cCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh--
Q 004369          534 MFVR----LGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRR----HGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS--  603 (758)
Q Consensus       534 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--  603 (758)
                      .|..    .+++++|++.+++.--..+...+..+...+..    .+++++|...++++++.+|  +..+..|+.+|..  
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~  232 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE  232 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence            8988    89999999999987212356778889999999    9999999999999999876  6788999999999  


Q ss_pred             --CCCchhHHHHHHHhhhCC
Q 004369          604 --AGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       604 --~g~~~~a~~~~~~m~~~~  621 (758)
                        .|++++|.+.+++..+.+
T Consensus       233 ~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          233 GVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             SSSCCSTTHHHHHHHHHHHT
T ss_pred             CcccCHHHHHHHHHHHHHcC
Confidence              999999999999988754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.42  E-value=8.6e-12  Score=116.65  Aligned_cols=164  Identities=13%  Similarity=0.104  Sum_probs=128.9

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q 004369          453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCL  531 (758)
Q Consensus       453 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l  531 (758)
                      +...|..+...|...|++++|++.|++..+.  .|+ ..++..+..++.+.|++++|...+..+...  .+.+...+..+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~   79 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL   79 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence            4456777777888888888888888887774  454 556777777888888888888888887653  23345667777


Q ss_pred             HHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchh
Q 004369          532 IDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWED  609 (758)
Q Consensus       532 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  609 (758)
                      ...+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            78888888888888888877 4445 567788888888888999999999999988889888888889999999999999


Q ss_pred             HHHHHHHhhhC
Q 004369          610 VAVVKNLTREE  620 (758)
Q Consensus       610 a~~~~~~m~~~  620 (758)
                      |.+.+++..+.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            98888887764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.41  E-value=2.1e-12  Score=140.29  Aligned_cols=208  Identities=11%  Similarity=0.003  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCH-HHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004369          405 EQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRI-ERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDM  480 (758)
Q Consensus       405 ~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  480 (758)
                      +.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++..   ..+...|..+...|...|++++|++.|++.
T Consensus        85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  163 (474)
T 4abn_A           85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA  163 (474)
T ss_dssp             HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444443332 234667777888888888888 88888888765   345778999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHhcc---------ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 004369          481 LLAGVRPNQVTFVGALAACSNA---------GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRL--------GCIEE  543 (758)
Q Consensus       481 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~  543 (758)
                      .+.  .|+...+..+...+...         |++++|...|+++.+.  .+.+...|..+..+|...        |++++
T Consensus       164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            884  68878888888899999         9999999999999873  233478899999999999        99999


Q ss_pred             HHHHHHHc-CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369          544 AFDFIKKM-DFEP----NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLT  617 (758)
Q Consensus       544 A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  617 (758)
                      |++.|++. ...|    +...|..+...+...|++++|...++++++++|+++..+..++.++...|++++|.+.++.+
T Consensus       240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999998 5555    67889999999999999999999999999999999999999999999999999998765443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.40  E-value=6.4e-12  Score=121.06  Aligned_cols=194  Identities=14%  Similarity=0.060  Sum_probs=150.9

Q ss_pred             CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHH
Q 004369          385 KPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMI  461 (758)
Q Consensus       385 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li  461 (758)
                      +++...+..+...+...|++++|...++.+++.. +.+...+..+...|.+.|++++|...|++..   +.+...|..+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            3455667777778888999999999999888764 5567888889999999999999999998865   44667888899


Q ss_pred             HHHHhc-----------CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHH
Q 004369          462 TGFANH-----------SLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYM  529 (758)
Q Consensus       462 ~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~  529 (758)
                      ..+...           |++++|+..|++..+.  .|+ ...+..+..++...|++++|...|+++.+. .  .+...+.
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~  155 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRS  155 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHH
Confidence            999999           9999999999999884  565 667888888999999999999999999884 4  6788899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 004369          530 CLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLL  584 (758)
Q Consensus       530 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  584 (758)
                      .+..+|...|++++|+..+++. ...| +...+..+...+...|++++|...+++..
T Consensus       156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            9999999999999999999988 5566 67788899999999999999999887753

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.39  E-value=3.6e-11  Score=120.21  Aligned_cols=241  Identities=11%  Similarity=-0.014  Sum_probs=182.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCC--
Q 004369          313 VRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPD--  387 (758)
Q Consensus       313 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~--  387 (758)
                      ........+.+.|++++|...|++..+   .+...|..+...|..           .|++++|+..|++..+....|+  
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-----------~~~~~~A~~~~~~a~~~~~~~~~~   73 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE-----------LAKYDLAQKDIETYFSKVNATKAK   73 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH-----------TTCHHHHHHHHHHHHTTSCTTTCC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHhccCchhHH
Confidence            344566677788888888888887643   334467777778888           8899999999988887432222  


Q ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 004369          388 LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGF  464 (758)
Q Consensus       388 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~  464 (758)
                      ...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++...   .+...|..+...+
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  152 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY  152 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence            2347778888889999999999998888864 44667899999999999999999999999874   3567788787344


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccc---HHHHHHHHHHhhhhcCCCCC------HHHHHHHHHH
Q 004369          465 ANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGM---VYEALGYFEMMQKEYKIKPV------MDHYMCLIDM  534 (758)
Q Consensus       465 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~  534 (758)
                      ...+++++|++.|+++.+.  .|+ ...+..+..++...|+   +++|...++.+.+...-.|+      ...|..+...
T Consensus       153 ~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  230 (272)
T 3u4t_A          153 YYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY  230 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            4456999999999999985  455 5677777778888887   88899999888764433344      2678889999


Q ss_pred             HHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHH
Q 004369          535 FVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGC  567 (758)
Q Consensus       535 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~  567 (758)
                      |.+.|++++|.+.++++ ...| +...+..+....
T Consensus       231 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  265 (272)
T 3u4t_A          231 YTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL  265 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred             HHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence            99999999999999998 6667 455555554443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.38  E-value=1.1e-10  Score=116.79  Aligned_cols=225  Identities=12%  Similarity=-0.022  Sum_probs=190.3

Q ss_pred             eeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhc----ccchHHHHHHHHHHHHc
Q 004369          342 LVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSR----LVALEQGEQIHALTLKT  417 (758)
Q Consensus       342 ~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~  417 (758)
                      ..++..+...|..           .|++++|+..|++..+.   -+...+..+...+..    .+++++|...+....+.
T Consensus         6 ~~a~~~lg~~~~~-----------~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~   71 (273)
T 1ouv_A            6 PKELVGLGAKSYK-----------EKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL   71 (273)
T ss_dssp             HHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence            3345556666777           99999999999999883   345667777788888    99999999999999987


Q ss_pred             CCCChHHHHhHHhhhHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCC
Q 004369          418 GFLSDVVVGTALVNMYKK----CGRIERASRVFVEMST-RTLISWTSMITGFAN----HSLSHQALQLFEDMLLAGVRPN  488 (758)
Q Consensus       418 ~~~~~~~~~~~Li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~  488 (758)
                      +   +...+..+..+|..    .+++++|...|++..+ .+..++..+...|..    .+++++|+..|++..+.+   +
T Consensus        72 ~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~  145 (273)
T 1ouv_A           72 N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---D  145 (273)
T ss_dssp             T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---c
Confidence            6   67788889999999    9999999999998763 467889999999999    999999999999999876   5


Q ss_pred             HHHHHHHHHHHhc----cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHc-CCCCCHHH
Q 004369          489 QVTFVGALAACSN----AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR----LGCIEEAFDFIKKM-DFEPNEVI  559 (758)
Q Consensus       489 ~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~  559 (758)
                      ...+..+...+..    .+++++|..+|+...+.    .+...+..+..+|..    .+++++|++.+++. ... +...
T Consensus       146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a  220 (273)
T 1ouv_A          146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGG  220 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHH
Confidence            5666777777777    89999999999999873    245778889999999    99999999999988 333 3677


Q ss_pred             HHHHHHHHHH----cCChhHHHHHHHHHhccCCCCc
Q 004369          560 WSVFIAGCRR----HGNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       560 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~  591 (758)
                      +..|...+..    .+++++|...++++++++|+++
T Consensus       221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a  256 (273)
T 1ouv_A          221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA  256 (273)
T ss_dssp             HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence            8888999998    9999999999999999998753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.38  E-value=1.4e-11  Score=128.93  Aligned_cols=241  Identities=10%  Similarity=0.063  Sum_probs=202.1

Q ss_pred             echhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCC-CHHHHHHHHHHHhcccc-hHHHHHHHHHHHHcCCCC
Q 004369          344 TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP-DLYTFSSILTICSRLVA-LEQGEQIHALTLKTGFLS  421 (758)
Q Consensus       344 ~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~~~~~  421 (758)
                      .|+.+...+.+           .|++++|+..|++..+.  .| +...|..+..++...|+ +++|...+..+++.. +.
T Consensus        99 a~~~lg~~~~~-----------~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~  164 (382)
T 2h6f_A           99 VYDYFRAVLQR-----------DERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PK  164 (382)
T ss_dssp             HHHHHHHHHHH-----------TCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHH-----------CCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CC
Confidence            46666666777           99999999999999875  44 56677888888999996 999999999999875 45


Q ss_pred             hHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 004369          422 DVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALA  497 (758)
Q Consensus       422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~  497 (758)
                      +..+|+.+..+|.+.|++++|...|+++.   ..+...|..+..++...|++++|+..|+++++.  .|+ ...|..+..
T Consensus       165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~  242 (382)
T 2h6f_A          165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYF  242 (382)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            78899999999999999999999999876   457789999999999999999999999999985  454 678888888


Q ss_pred             HHhc-cccHHHH-----HHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 004369          498 ACSN-AGMVYEA-----LGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLG--CIEEAFDFIKKMDFEP-NEVIWSVFIAGC  567 (758)
Q Consensus       498 a~~~-~g~~~~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~  567 (758)
                      ++.+ .|..++|     +..|+.+.+   +.| +...|..+..+|.+.|  ++++|++.++++...| +...+..|+..+
T Consensus       243 ~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~  319 (382)
T 2h6f_A          243 VISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY  319 (382)
T ss_dssp             HHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            8888 6665777     578888776   245 4678899999999988  6899999999885566 567788999999


Q ss_pred             HHcC--------C-hhHHHHHHHHH-hccCCCCchhHHHHHHHhhh
Q 004369          568 RRHG--------N-MELGFYAAEQL-LKLKPKDCESYAMLLDIFVS  603 (758)
Q Consensus       568 ~~~g--------~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~  603 (758)
                      .+.|        + .++|..+++++ .+++|.....|..++..+..
T Consensus       320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          320 EDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence            8874        2 58999999999 99999999999988877654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.36  E-value=5.3e-12  Score=134.87  Aligned_cols=253  Identities=13%  Similarity=0.051  Sum_probs=200.7

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCH----HHHHHHHHHHhcccchHHHHHHHHHHHHc----C-CCChHHHHhHHhhhHHhc
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDL----YTFSSILTICSRLVALEQGEQIHALTLKT----G-FLSDVVVGTALVNMYKKC  436 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~-~~~~~~~~~~Li~~y~~~  436 (758)
                      .|++++|+..|++..+.... +.    ..+..+...+...|+++.|...+..+.+.    + .+....++..+...|...
T Consensus        61 ~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  139 (411)
T 4a1s_A           61 AGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM  139 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence            99999999999999885322 22    46777888889999999999999887653    2 123456788899999999


Q ss_pred             CCHHHHHHHHHhcCCC---------ChhHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHc----CCC
Q 004369          437 GRIERASRVFVEMSTR---------TLISWTSMITGFANHSL-----------------SHQALQLFEDMLLA----GVR  486 (758)
Q Consensus       437 g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~----g~~  486 (758)
                      |++++|...|++....         ...+|..+...|...|+                 +++|++.+++..+.    +-.
T Consensus       140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~  219 (411)
T 4a1s_A          140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR  219 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence            9999999999876521         23578889999999999                 99999999887652    212


Q ss_pred             CC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCC---C--
Q 004369          487 PN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFE---P--  555 (758)
Q Consensus       487 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~---p--  555 (758)
                      |. ..++..+...+...|++++|..++++..+...-.++    ...+..+...|...|++++|.+.+++. ...   .  
T Consensus       220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  299 (411)
T 4a1s_A          220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER  299 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence            22 347777888899999999999999988763211122    237888999999999999999999887 111   1  


Q ss_pred             --CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC------CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          556 --NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK------DCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       556 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                        ...++..+...+...|++++|...+++++++.+.      ....+..++.+|...|++++|.+.++...+
T Consensus       300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence              2467888999999999999999999999987543      245888999999999999999999998865

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.35  E-value=3.3e-11  Score=120.60  Aligned_cols=217  Identities=10%  Similarity=-0.041  Sum_probs=179.0

Q ss_pred             hcccchHHHHHHHHHHHHcCC---CChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHH
Q 004369          399 SRLVALEQGEQIHALTLKTGF---LSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQ  472 (758)
Q Consensus       399 ~~~~~~~~a~~i~~~~~~~~~---~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~  472 (758)
                      ...+++++|...+..+.+...   +.+..++..+...|...|++++|...|++..   ..+...|..+...|...|++++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence            345789999999999988632   2357788899999999999999999999875   4567899999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-
Q 004369          473 ALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-  551 (758)
Q Consensus       473 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-  551 (758)
                      |+..|+++.+.. +.+...+..+...+...|++++|..+|+.+.+.   .|+..........+.+.|++++|...+++. 
T Consensus        96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999852 234778889999999999999999999999863   355444555556667889999999999776 


Q ss_pred             CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC----CchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          552 DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK----DCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       552 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      ...| +...| .++..+...++.++|...++++++..|.    ++..+..++.+|...|++++|...++.+.+.
T Consensus       172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            3233 44444 4777778888899999999999988764    3688999999999999999999999999864

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.35  E-value=1.5e-11  Score=130.92  Aligned_cols=253  Identities=15%  Similarity=0.052  Sum_probs=200.4

Q ss_pred             CCChhHHHHHHHHhHhCCCCCC----HHHHHHHHHHHhcccchHHHHHHHHHHHHc----CCCC-hHHHHhHHhhhHHhc
Q 004369          366 HNGGTEALSIFSKLNSSGMKPD----LYTFSSILTICSRLVALEQGEQIHALTLKT----GFLS-DVVVGTALVNMYKKC  436 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~~-~~~~~~~Li~~y~~~  436 (758)
                      .|++++|+..|++..+.... +    ...+..+...+...|+++.|...+..+.+.    +..+ ...++..+...|...
T Consensus        22 ~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  100 (406)
T 3sf4_A           22 SGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL  100 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence            99999999999999885322 2    246777888899999999999998876543    2222 356788899999999


Q ss_pred             CCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHc----
Q 004369          437 GRIERASRVFVEMST-----RT----LISWTSMITGFANHSL--------------------SHQALQLFEDMLLA----  483 (758)
Q Consensus       437 g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~----  483 (758)
                      |++++|...|++...     .+    ..+|..+...|...|+                    +++|+..+++..+.    
T Consensus       101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~  180 (406)
T 3sf4_A          101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL  180 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999987652     12    3478889999999999                    99999999887652    


Q ss_pred             CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc-C---CC
Q 004369          484 GVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MDHYMCLIDMFVRLGCIEEAFDFIKKM-D---FE  554 (758)
Q Consensus       484 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~  554 (758)
                      +-.|. ..++..+...+...|++++|...+++..+...-.++    ...+..+...|...|++++|.+.+++. .   ..
T Consensus       181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  260 (406)
T 3sf4_A          181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL  260 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence            21222 346778888899999999999999988753222222    347888999999999999999999887 1   11


Q ss_pred             CC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC------chhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          555 PN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD------CESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       555 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ++    ..++..+...+...|++++|...+++++++.+..      ...+..++.+|...|++++|.+.++...+
T Consensus       261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            12    5578889999999999999999999999875432      56888999999999999999999998765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.35  E-value=2.4e-11  Score=113.53  Aligned_cols=167  Identities=10%  Similarity=0.084  Sum_probs=144.5

Q ss_pred             hHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004369          422 DVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAA  498 (758)
Q Consensus       422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  498 (758)
                      +..+|..|...|.+.|++++|.+.|++..   +.++.+|..+...|.+.|++++|+..+++..... .-+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            56788899999999999999999999865   4577889999999999999999999999998852 2235667777778


Q ss_pred             HhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 004369          499 CSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELG  576 (758)
Q Consensus       499 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a  576 (758)
                      +...++++.+...+....+.  .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            88999999999999998763  3345778899999999999999999999998 5566 678899999999999999999


Q ss_pred             HHHHHHHhccCCCCc
Q 004369          577 FYAAEQLLKLKPKDC  591 (758)
Q Consensus       577 ~~~~~~~~~~~p~~~  591 (758)
                      ...++++++++|+++
T Consensus       161 ~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          161 VKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHhCCccCH
Confidence            999999999999753

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.34  E-value=3.2e-11  Score=124.36  Aligned_cols=254  Identities=15%  Similarity=0.054  Sum_probs=199.5

Q ss_pred             CCChhHHHHHHHHhHhCCCCCC----HHHHHHHHHHHhcccchHHHHHHHHHHHHc----CCC-ChHHHHhHHhhhHHhc
Q 004369          366 HNGGTEALSIFSKLNSSGMKPD----LYTFSSILTICSRLVALEQGEQIHALTLKT----GFL-SDVVVGTALVNMYKKC  436 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~Li~~y~~~  436 (758)
                      .|++++|+..|+++.+.... +    ...+..+...+...|+++.|...+..+.+.    +.. ....++..+...|...
T Consensus        18 ~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   96 (338)
T 3ro2_A           18 SGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL   96 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             hccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence            99999999999999885322 2    356777888899999999999998876543    222 2366788899999999


Q ss_pred             CCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHc----
Q 004369          437 GRIERASRVFVEMST-----RT----LISWTSMITGFANHSL--------------------SHQALQLFEDMLLA----  483 (758)
Q Consensus       437 g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~----  483 (758)
                      |++++|...|++..+     .+    ..++..+...|...|+                    +++|+..+++....    
T Consensus        97 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~  176 (338)
T 3ro2_A           97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL  176 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999987652     22    2478888899999999                    99999999887642    


Q ss_pred             CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc-C---CC
Q 004369          484 GVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MDHYMCLIDMFVRLGCIEEAFDFIKKM-D---FE  554 (758)
Q Consensus       484 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~  554 (758)
                      +-.|. ..++..+...+...|++++|..+++.+.+...-.++    ...+..+...|...|++++|.+.+++. .   ..
T Consensus       177 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  256 (338)
T 3ro2_A          177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL  256 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Confidence            21222 346777888899999999999999988653211122    347888999999999999999999887 1   11


Q ss_pred             CC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC------chhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          555 PN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD------CESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       555 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      ++    ..++..+...+...|++++|...+++++++.|..      ...+..++.+|...|++++|...++...+.
T Consensus       257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          257 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            22    5568889999999999999999999998875432      447889999999999999999999998763

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.34  E-value=2.7e-09  Score=119.10  Aligned_cols=432  Identities=9%  Similarity=0.012  Sum_probs=272.3

Q ss_pred             CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCC---hHHHHHHHHHHHHhCC-CCChhHH
Q 004369          138 INVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLES---IRLGKQIHAYVVKYQT-EDDTSVG  213 (758)
Q Consensus       138 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~~~~~~~  213 (758)
                      .|..+|..++..+.+.+.++.+..+|+++... .+.....|..-+..-.+.+.   .+.+.++|+..+.... .|++..|
T Consensus        64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW  142 (679)
T 4e6h_A           64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW  142 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            47788999999988889999999999999875 33355566667777677777   8889999998887652 4677788


Q ss_pred             HHHHHHHhhcCCh--------HHHHHHHhccC------CC-CcchHHHHHHHHhh---------CCChhhHHHHHHHHHH
Q 004369          214 NSLCSLYSTCGSL--------NSAIKAFNRIR------EK-NVMSWTTVIGACGE---------NGEAVQGLRFFSKMLS  269 (758)
Q Consensus       214 ~~Li~~y~~~g~~--------~~A~~~f~~~~------~~-~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~  269 (758)
                      ...+....+.++.        +...++|+...      .+ +...|...|.-...         .++.+.+..+|++.+.
T Consensus       143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~  222 (679)
T 4e6h_A          143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC  222 (679)
T ss_dssp             HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence            8777665555543        23446676532      22 23467777754332         2345667778877764


Q ss_pred             CCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcc-------CCC--C
Q 004369          270 EGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDG-------MSH--V  340 (758)
Q Consensus       270 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~--~  340 (758)
                      .....-..+|.......... +...+..++...                     ..+++.|...+.+       +..  |
T Consensus       223 iP~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p  280 (679)
T 4e6h_A          223 QPMDCLESMWQRYTQWEQDV-NQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNLP  280 (679)
T ss_dssp             SCCSSHHHHHHHHHHHHHHH-CTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred             CccHHHHHHHHHHHHHHHhc-CcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhccc
Confidence            21111112221111110000 111122211110                     1122233333322       111  0


Q ss_pred             Ce---------e----echhHHHHHhhhchhhhchhhcCC-------ChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhc
Q 004369          341 NL---------V----TWNAMIAGHAQMMDLAKDDLSAHN-------GGTEALSIFSKLNSSGMKPDLYTFSSILTICSR  400 (758)
Q Consensus       341 ~~---------~----~~~~li~~~~~~~~~~~~~l~~~g-------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~  400 (758)
                      ..         .    .+..-+..+.+..+..+.    ++       ..+.+..+|++.... +.-+...|.....-+..
T Consensus       281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~----~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~  355 (679)
T 4e6h_A          281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESD----NKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGE  355 (679)
T ss_dssp             SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHT----CTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred             cccccchhccCCCCchhHHHHHHHHHHHHHHHHh----CCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Confidence            00         0    011112222222122111    11       123455677777664 23356666666777777


Q ss_pred             ccchHHHH-HHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-------------C------------Ch
Q 004369          401 LVALEQGE-QIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST-------------R------------TL  454 (758)
Q Consensus       401 ~~~~~~a~-~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-------------~------------~~  454 (758)
                      .|+.+.|. .+++..+.. .+.+..++-..+..+-+.|+++.|.++|+++..             |            ..
T Consensus       356 ~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~  434 (679)
T 4e6h_A          356 KNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT  434 (679)
T ss_dssp             HSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence            88888896 999999874 456777788889999999999999999998763             2            12


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 004369          455 ISWTSMITGFANHSLSHQALQLFEDMLLA-G-VRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLI  532 (758)
Q Consensus       455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li  532 (758)
                      ..|...+....+.|..+.|..+|.+..+. + ..+......+.+.-. ..++++.|..+|+...+.++  -+...+...+
T Consensus       435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~  511 (679)
T 4e6h_A          435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKYFA--TDGEYINKYL  511 (679)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCC--CchHHHHHHH
Confidence            36888888888889999999999999885 2 222233333333321 23569999999999988643  3456678889


Q ss_pred             HHHHHcCCHHHHHHHHHHc-CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369          533 DMFVRLGCIEEAFDFIKKM-DFEP----NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV  602 (758)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  602 (758)
                      +.....|+.+.|..+|++. ...|    ....|...+.--.++|+.+.+..+.+++.+..|+++ ....+++-|.
T Consensus       512 ~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry~  585 (679)
T 4e6h_A          512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKYK  585 (679)
T ss_dssp             HHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHTC
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHhc
Confidence            9999999999999999998 3333    346799999999999999999999999999999874 3444455553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.32  E-value=3e-11  Score=136.54  Aligned_cols=162  Identities=17%  Similarity=0.186  Sum_probs=134.6

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHH
Q 004369          453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMC  530 (758)
Q Consensus       453 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~  530 (758)
                      +..+|+.|...|.+.|++++|++.|++.++  +.|+ ...+..+..++.+.|++++|.+.|+++.+.   .|+ ...|..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n   82 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN   82 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence            345677888888888888888888888887  4565 567888888888888888888888888762   344 678888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCch
Q 004369          531 LIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWE  608 (758)
Q Consensus       531 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  608 (758)
                      +..+|.+.|++++|++.|++. .+.| +...|..|...+...|++++|+..++++++++|+++..+..|+.+|...|+|+
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            888999999999999998887 6666 57788999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhh
Q 004369          609 DVAVVKNLTRE  619 (758)
Q Consensus       609 ~a~~~~~~m~~  619 (758)
                      +|.+.+++..+
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99888877654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.32  E-value=9e-12  Score=132.60  Aligned_cols=244  Identities=14%  Similarity=0.029  Sum_probs=173.2

Q ss_pred             CCChhHHHHHHHHhHhC----CCCC-CHHHHHHHHHHHhcccchHHHHHHHHHHHHc----CCC-ChHHHHhHHhhhHHh
Q 004369          366 HNGGTEALSIFSKLNSS----GMKP-DLYTFSSILTICSRLVALEQGEQIHALTLKT----GFL-SDVVVGTALVNMYKK  435 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~Li~~y~~  435 (758)
                      .|++++|+..|++....    +-.| ...++..+...+...|+++.|...+..+.+.    +.. ....++..+...|..
T Consensus        60 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  139 (406)
T 3sf4_A           60 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA  139 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            55556666555554321    1122 2345566666777788888888877766542    111 124477778888888


Q ss_pred             cCC--------------------HHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-
Q 004369          436 CGR--------------------IERASRVFVEMST-----R----TLISWTSMITGFANHSLSHQALQLFEDMLLAGV-  485 (758)
Q Consensus       436 ~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-  485 (758)
                      .|+                    +++|...+++...     .    ...+|..+...|...|++++|+..+++..+... 
T Consensus       140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  219 (406)
T 3sf4_A          140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE  219 (406)
T ss_dssp             HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence            888                    8888888776431     1    234688888899999999999999998875311 


Q ss_pred             CCC----HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc----CC
Q 004369          486 RPN----QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MDHYMCLIDMFVRLGCIEEAFDFIKKM----DF  553 (758)
Q Consensus       486 ~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~  553 (758)
                      .++    ..++..+...+...|++++|..+++...+...-.++    ...+..+...|...|++++|.+.+++.    +.
T Consensus       220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  299 (406)
T 3sf4_A          220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  299 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence            122    336778888899999999999999987653211111    567888999999999999999999887    11


Q ss_pred             CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccC------CCCchhHHHHHHHhhhCCCchh
Q 004369          554 EPN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLK------PKDCESYAMLLDIFVSAGRWED  609 (758)
Q Consensus       554 ~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~  609 (758)
                      .++    ..++..+...+...|++++|...+++++++.      +....++..++.+|...|+...
T Consensus       300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            122    5578889999999999999999999998863      2335678888999988887643

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.28  E-value=1.3e-11  Score=125.95  Aligned_cols=233  Identities=12%  Similarity=0.111  Sum_probs=169.6

Q ss_pred             CHHHHHHHHHHHhcccchHHHHHHHHHHHHc-------CCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-------C
Q 004369          387 DLYTFSSILTICSRLVALEQGEQIHALTLKT-------GFLSDVVVGTALVNMYKKCGRIERASRVFVEMST-------R  452 (758)
Q Consensus       387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-------~  452 (758)
                      +..++..+...+...|++++|..++..+.+.       ..+....++..+...|...|++++|...|++...       +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            4456777888889999999999999888773       3344567888999999999999999999987652       1


Q ss_pred             ----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhc--
Q 004369          453 ----TLISWTSMITGFANHSLSHQALQLFEDMLLA------GVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEY--  519 (758)
Q Consensus       453 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--  519 (758)
                          ...+|..+...|...|++++|+..|+++.+.      +-.|+ ...+..+...+...|++++|.++++.+.+..  
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                2357888999999999999999999998874      22333 4567788889999999999999999987631  


Q ss_pred             ---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-C---------CCCCH-------HHHHHHHHHHHHcCChhHHHH
Q 004369          520 ---KIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-D---------FEPNE-------VIWSVFIAGCRRHGNMELGFY  578 (758)
Q Consensus       520 ---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---------~~p~~-------~~~~~ll~~~~~~g~~~~a~~  578 (758)
                         +..| ....+..+...|.+.|++++|.+.++++ .         ..|..       ..+..+...+...+.+.++..
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  265 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG  265 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence               1123 3567888999999999999999999876 1         12211       122333334445567777788


Q ss_pred             HHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          579 AAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       579 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      .++++....|.++..+..++.+|.+.|++++|.++++...+
T Consensus       266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88888888888899999999999999999999999998765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.25  E-value=1.7e-10  Score=111.95  Aligned_cols=162  Identities=14%  Similarity=0.094  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHH
Q 004369          455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLID  533 (758)
Q Consensus       455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~  533 (758)
                      ..|......+...|++++|+..|++..+....++...+..+..++...|++++|...|+...+   ..| +...|..+..
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~   84 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSA   84 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHH
Confidence            334444444444444444444444444432223333333344444444444444444444433   112 2334444444


Q ss_pred             HHHHcCCHHHHHHHHHHc-CCCC-CH-------HHHHHHHHHHHHcCChhHHHHHHHHHhccCCC--CchhHHHHHHHhh
Q 004369          534 MFVRLGCIEEAFDFIKKM-DFEP-NE-------VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK--DCESYAMLLDIFV  602 (758)
Q Consensus       534 ~~~~~g~~~~A~~~~~~m-~~~p-~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~  602 (758)
                      .|...|++++|++.+++. ...| +.       ..|..+...+...|++++|+..++++++++|+  ++..+..++.+|.
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  164 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY  164 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence            444445555554444444 2222 12       22444444444445555555555555555554  4444555555554


Q ss_pred             hCCC---------------------------chhHHHHHHHhhh
Q 004369          603 SAGR---------------------------WEDVAVVKNLTRE  619 (758)
Q Consensus       603 ~~g~---------------------------~~~a~~~~~~m~~  619 (758)
                      ..|+                           +++|...++...+
T Consensus       165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  208 (228)
T 4i17_A          165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT  208 (228)
T ss_dssp             HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4444                           4777777777765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.25  E-value=1.3e-09  Score=111.11  Aligned_cols=218  Identities=10%  Similarity=0.094  Sum_probs=148.4

Q ss_pred             hHHHHHHHHhHhCCCCCCHHHHHHHHHHHh-------cccch-------HHHHHHHHHHHHcCCCChHHHHhHHhhhHHh
Q 004369          370 TEALSIFSKLNSSGMKPDLYTFSSILTICS-------RLVAL-------EQGEQIHALTLKTGFLSDVVVGTALVNMYKK  435 (758)
Q Consensus       370 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~  435 (758)
                      ++|+..|++..... +-+...|..+...+.       ..|++       ++|..+++..++.-.+.+...+..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            57778888887641 224445555555543       34665       7788888887773224456677788888888


Q ss_pred             cCCHHHHHHHHHhcCC--C-Chh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccccHHHHHH
Q 004369          436 CGRIERASRVFVEMST--R-TLI-SWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACS-NAGMVYEALG  510 (758)
Q Consensus       436 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~  510 (758)
                      .|++++|..+|++..+  | +.. .|..++..+.+.|+.++|..+|++..+.. +++...|........ ..|++++|..
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888888887653  2 333 78888888888888888888888887743 223344443332222 3578888888


Q ss_pred             HHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-C---CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 004369          511 YFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-D---FEP--NEVIWSVFIAGCRRHGNMELGFYAAEQLL  584 (758)
Q Consensus       511 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  584 (758)
                      +|+.+.+..  +-+...|..+++.+.+.|++++|..+|++. .   ..|  ....|..++......|+.+.|..++++++
T Consensus       191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888877642  234667777888888888888888888877 2   344  35567777877778888888888888888


Q ss_pred             ccCCCCc
Q 004369          585 KLKPKDC  591 (758)
Q Consensus       585 ~~~p~~~  591 (758)
                      +..|++.
T Consensus       269 ~~~p~~~  275 (308)
T 2ond_A          269 TAFREEY  275 (308)
T ss_dssp             HHTTTTT
T ss_pred             HHccccc
Confidence            8887754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.24  E-value=4.1e-11  Score=127.95  Aligned_cols=262  Identities=11%  Similarity=0.014  Sum_probs=182.7

Q ss_pred             HHHHHHhcCCHHHHHHHHccCCC--CC-e----eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhC----CCC
Q 004369          317 IMYLYLKCGLVDEAQKLFDGMSH--VN-L----VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSS----GMK  385 (758)
Q Consensus       317 li~~~~~~g~~~~A~~~~~~m~~--~~-~----~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~----g~~  385 (758)
                      +...+...|++++|...|++..+  ++ .    ..|..+...|..           .|++++|+..|++..+.    +-.
T Consensus        54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~-----------~g~~~~A~~~~~~al~~~~~~~~~  122 (411)
T 4a1s_A           54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY-----------LGDYNKAMQYHKHDLTLAKSMNDR  122 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-----------HTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHHHHHHccCc
Confidence            34445555555555555554432  11 1    234444445555           66666666666655431    112


Q ss_pred             C-CHHHHHHHHHHHhcccchHHHHHHHHHHHHc----C-CCChHHHHhHHhhhHHhcCC-----------------HHHH
Q 004369          386 P-DLYTFSSILTICSRLVALEQGEQIHALTLKT----G-FLSDVVVGTALVNMYKKCGR-----------------IERA  442 (758)
Q Consensus       386 p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~-~~~~~~~~~~Li~~y~~~g~-----------------~~~A  442 (758)
                      | ....+..+...+...|++++|...+..+.+.    + .+....++..+...|...|+                 +++|
T Consensus       123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A  202 (411)
T 4a1s_A          123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA  202 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence            2 3356667777888889999998888776653    2 12235578888899999999                 9999


Q ss_pred             HHHHHhcCC-----C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccccHHHH
Q 004369          443 SRVFVEMST-----R----TLISWTSMITGFANHSLSHQALQLFEDMLLAGVR-PN----QVTFVGALAACSNAGMVYEA  508 (758)
Q Consensus       443 ~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a  508 (758)
                      .+.|++...     .    ....|..+...|...|++++|+..|++..+.... ++    ..++..+...+...|++++|
T Consensus       203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  282 (411)
T 4a1s_A          203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA  282 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence            888877542     1    2347888899999999999999999998763111 12    23677888899999999999


Q ss_pred             HHHHHHhhhhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CC------CC-CHHHHHHHHHHHHHcCChhHH
Q 004369          509 LGYFEMMQKEYKIKP----VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DF------EP-NEVIWSVFIAGCRRHGNMELG  576 (758)
Q Consensus       509 ~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~------~p-~~~~~~~ll~~~~~~g~~~~a  576 (758)
                      ..+++.+.+...-..    ....+..+...|.+.|++++|.+.+++. ..      .+ ...++..+...+...|++++|
T Consensus       283 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  362 (411)
T 4a1s_A          283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA  362 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence            999998765321111    1567888999999999999999999887 11      11 244788899999999999999


Q ss_pred             HHHHHHHhccCCC
Q 004369          577 FYAAEQLLKLKPK  589 (758)
Q Consensus       577 ~~~~~~~~~~~p~  589 (758)
                      ...+++++++.+.
T Consensus       363 ~~~~~~al~~~~~  375 (411)
T 4a1s_A          363 LKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.22  E-value=4.9e-10  Score=114.34  Aligned_cols=213  Identities=9%  Similarity=0.017  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHHHcCCCChHHHHhHHhhhHH-------hcCCH-------HHHHHHHHhcCC----CChhHHHHHHHHHHh
Q 004369          405 EQGEQIHALTLKTGFLSDVVVGTALVNMYK-------KCGRI-------ERASRVFVEMST----RTLISWTSMITGFAN  466 (758)
Q Consensus       405 ~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~  466 (758)
                      +.|..+++.+++.. +.+..+|..++..+.       +.|++       ++|..+|++...    .+...|..++..+..
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            56677777777753 556777877777775       35885       999999998653    355789999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH-HcCCHHH
Q 004369          467 HSLSHQALQLFEDMLLAGVRPNQ-V-TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFV-RLGCIEE  543 (758)
Q Consensus       467 ~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~  543 (758)
                      .|++++|..+|+++.+  +.|+. . .|..+...+.+.|++++|..+|+++.+.  .+++...|...+.... ..|+.++
T Consensus       112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999998  56653 3 7888899999999999999999999863  2334555655444433 3699999


Q ss_pred             HHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhcc---CCC-CchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369          544 AFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKL---KPK-DCESYAMLLDIFVSAGRWEDVAVVKNLT  617 (758)
Q Consensus       544 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m  617 (758)
                      |.++|++. ...| +...|..++..+...|+.++|..+++++++.   .|+ ....+..++..+.+.|++++|..+++.+
T Consensus       188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999988 4445 6788999999999999999999999999996   453 5678889999999999999999999998


Q ss_pred             hhCCC
Q 004369          618 REEKL  622 (758)
Q Consensus       618 ~~~~~  622 (758)
                      .+...
T Consensus       268 ~~~~p  272 (308)
T 2ond_A          268 FTAFR  272 (308)
T ss_dssp             HHHTT
T ss_pred             HHHcc
Confidence            87443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.22  E-value=3.4e-10  Score=105.33  Aligned_cols=157  Identities=15%  Similarity=0.079  Sum_probs=85.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC
Q 004369          460 MITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG  539 (758)
Q Consensus       460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  539 (758)
                      +...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+.  .+.+...+..+...|...|
T Consensus        14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~   90 (186)
T 3as5_A           14 KGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQ   90 (186)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Confidence            3333444444444444444433321 112333444444444455555555555544432  1223444555555555666


Q ss_pred             CHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369          540 CIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLT  617 (758)
Q Consensus       540 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  617 (758)
                      ++++|.+.++++ ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++.+
T Consensus        91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  170 (186)
T 3as5_A           91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA  170 (186)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            666666666555 2222 45556666666666777777777777777777766667777777777777777777776666


Q ss_pred             hh
Q 004369          618 RE  619 (758)
Q Consensus       618 ~~  619 (758)
                      .+
T Consensus       171 ~~  172 (186)
T 3as5_A          171 NE  172 (186)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.21  E-value=8.3e-10  Score=107.06  Aligned_cols=204  Identities=11%  Similarity=0.052  Sum_probs=140.0

Q ss_pred             CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHH
Q 004369          387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITG  463 (758)
Q Consensus       387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~  463 (758)
                      |+..+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++..   +.+...|..+...
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            4566667777777888888888888888776543566666667888888888888888887765   2345677778888


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC---HHHHHHHH
Q 004369          464 FANHSLSHQALQLFEDMLLAGVRPN-Q-------VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV---MDHYMCLI  532 (758)
Q Consensus       464 ~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li  532 (758)
                      |...|++++|+..|++..+.  .|+ .       ..|..+...+...|++++|.+.|+.+.+   +.|+   ...|..+.
T Consensus        86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~  160 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence            88888888888888888774  344 3       3466666677777888888888887754   3454   45666677


Q ss_pred             HHHHHcCCHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369          533 DMFVRLGCIEEAFDFIKKM-DFE-PNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV  602 (758)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  602 (758)
                      ..|...|+.     .++++ ... .+...+..+.  ....+.+++|...++++++++|+++.+...|..+..
T Consensus       161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            777655432     22332 111 1233333332  234566799999999999999999988888876654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.21  E-value=2.5e-08  Score=111.26  Aligned_cols=411  Identities=11%  Similarity=0.045  Sum_probs=242.9

Q ss_pred             hHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCC---hHHHHHHH
Q 004369           56 SLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGN---MEEAQKVF  132 (758)
Q Consensus        56 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~f  132 (758)
                      .+.+..|.+.+..++. |..+|..++..+.+.+.++.++.+++.++.. ++.....|...+..-.+.|.   ++.+..+|
T Consensus        49 ~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf  126 (679)
T 4e6h_A           49 SDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL  126 (679)
T ss_dssp             SCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence            3445556666666654 8889999999999999999999999999977 47778889999999888898   99999999


Q ss_pred             ccCCC-----CCcchHHHHHHHHHhCCCc--------hHHHHHHHHHHH-cCC-CCC-hhhHHHHHHHhcc---------
Q 004369          133 DNLPR-----INVVSWTSLISGYVQNSQP--------ELAIHVFLDMLE-AGN-YPT-NVTLGTALTACSS---------  187 (758)
Q Consensus       133 ~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~t~~~ll~~~~~---------  187 (758)
                      ++...     +++..|..-+.-..+.++.        +...++|+.... .|. .|+ ...|...+.-...         
T Consensus       127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee  206 (679)
T 4e6h_A          127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE  206 (679)
T ss_dssp             HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence            88652     6777888877755554443        334477776554 466 554 3456655554322         


Q ss_pred             cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhh-------------cCChHHHHHHHhccC-------C--C------
Q 004369          188 LESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYST-------------CGSLNSAIKAFNRIR-------E--K------  239 (758)
Q Consensus       188 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-------------~g~~~~A~~~f~~~~-------~--~------  239 (758)
                      .++++.++.+|..++......-..+|......-..             ..+++.|...+.++.       .  |      
T Consensus       207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~  286 (679)
T 4e6h_A          207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA  286 (679)
T ss_dssp             HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred             HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence            23467788999988853222122333222211111             112344555554311       0  0      


Q ss_pred             --------C------cchHHHHHHHHhhCCC-------hhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHH-H
Q 004369          240 --------N------VMSWTTVIGACGENGE-------AVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGA-Q  297 (758)
Q Consensus       240 --------~------~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~  297 (758)
                              +      ...|...|.---.++.       .+.+..+|++.+.. ..-+...|.....-+...|+.+.|. +
T Consensus       287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~  365 (679)
T 4e6h_A          287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITK  365 (679)
T ss_dssp             CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred             hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence                    0      1245555543333221       23345677777664 2335556666666667778888896 9


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC-------------CC------------eeechhHHHHH
Q 004369          298 VHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH-------------VN------------LVTWNAMIAGH  352 (758)
Q Consensus       298 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------~~------------~~~~~~li~~~  352 (758)
                      +++..+... +.+...+-.++...-+.|+++.|+++|+.+..             |+            ...|...+...
T Consensus       366 il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e  444 (679)
T 4e6h_A          366 YLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM  444 (679)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence            999998753 56777888899999999999999999988753             11            01233333333


Q ss_pred             hhhchhhhchhhcCCChhHHHHHHHHhHhC-C-CCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHh
Q 004369          353 AQMMDLAKDDLSAHNGGTEALSIFSKLNSS-G-MKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALV  430 (758)
Q Consensus       353 ~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~-g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li  430 (758)
                      .+           .|..+.|..+|.+..+. + ..+........+.-. ..++.+.|..+|+..++. ++.+...+...+
T Consensus       445 rR-----------~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~  511 (679)
T 4e6h_A          445 KR-----------IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKY-FATDGEYINKYL  511 (679)
T ss_dssp             HH-----------HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred             HH-----------cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCchHHHHHHH
Confidence            33           55556666666666554 1 111122211112111 123356666666555554 333444455555


Q ss_pred             hhHHhcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004369          431 NMYKKCGRIERASRVFVEMSTRT------LISWTSMITGFANHSLSHQALQLFEDMLLA  483 (758)
Q Consensus       431 ~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  483 (758)
                      +.....|+.+.|..+|++.....      ...|...+.--.+.|+.+.+..+.+++.+.
T Consensus       512 ~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~  570 (679)
T 4e6h_A          512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK  570 (679)
T ss_dssp             HHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            55555566666666666544221      234555555555555555555555555553

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.20  E-value=2.2e-10  Score=124.43  Aligned_cols=178  Identities=9%  Similarity=-0.038  Sum_probs=157.7

Q ss_pred             CHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHH
Q 004369          438 RIERASRVFVEMS---TRTLISWTSMITGFANHSLS-HQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYF  512 (758)
Q Consensus       438 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~  512 (758)
                      .++++...+++..   ..+...|..+...|...|++ ++|++.|++..+.  .|+ ...+..+..++...|++++|.+.|
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3566666666543   34678899999999999999 9999999999985  455 778999999999999999999999


Q ss_pred             HHhhhhcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc--------CCh
Q 004369          513 EMMQKEYKIKPVMDHYMCLIDMFVRL---------GCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH--------GNM  573 (758)
Q Consensus       513 ~~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------g~~  573 (758)
                      +.+.+   +.|+...+..+...|...         |++++|++.+++. ...| +...|..+..++...        |++
T Consensus       161 ~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            99975   468888999999999999         9999999999998 5566 678899999999998        999


Q ss_pred             hHHHHHHHHHhccCC---CCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          574 ELGFYAAEQLLKLKP---KDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       574 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      ++|...++++++++|   +++..|..++.+|...|++++|.+.++...+.
T Consensus       238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  287 (474)
T 4abn_A          238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL  287 (474)
T ss_dssp             HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999   99999999999999999999999999998763

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.19  E-value=4.4e-11  Score=122.04  Aligned_cols=236  Identities=11%  Similarity=0.017  Sum_probs=170.4

Q ss_pred             eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhC-------CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 004369          343 VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSS-------GMKPDLYTFSSILTICSRLVALEQGEQIHALTL  415 (758)
Q Consensus       343 ~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~  415 (758)
                      .+|..+...|..           .|++++|+.+|+++.+.       ........+..+...+...|++++|...+..+.
T Consensus        28 ~~~~~l~~~~~~-----------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al   96 (311)
T 3nf1_A           28 RTLHNLVIQYAS-----------QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL   96 (311)
T ss_dssp             HHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            456677777888           99999999999998763       223345677788888999999999999998887


Q ss_pred             Hc------CC-CChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhcCCHHHHHHHH
Q 004369          416 KT------GF-LSDVVVGTALVNMYKKCGRIERASRVFVEMST-------R----TLISWTSMITGFANHSLSHQALQLF  477 (758)
Q Consensus       416 ~~------~~-~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~  477 (758)
                      +.      +. +....++..+...|...|++++|...|++...       +    ....|..+...|...|++++|++.|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  176 (311)
T 3nf1_A           97 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY  176 (311)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            64      22 33467888999999999999999999987652       1    2356888999999999999999999


Q ss_pred             HHHHHc------CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhc------CCCCC-------HHHHHHHHHHHHH
Q 004369          478 EDMLLA------GVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEY------KIKPV-------MDHYMCLIDMFVR  537 (758)
Q Consensus       478 ~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-------~~~~~~li~~~~~  537 (758)
                      +++.+.      +-.|+ ..++..+...+...|++++|..+++.+.+..      ...+.       ...+..+...+..
T Consensus       177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (311)
T 3nf1_A          177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD  256 (311)
T ss_dssp             HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence            999874      22443 4567888889999999999999999987521      11111       1223333444555


Q ss_pred             cCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          538 LGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       538 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      .+.+.+|...+++. ...| +..+|..+...|...|++++|...+++++++.|.
T Consensus       257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          257 GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            56666666667666 3344 4667999999999999999999999999988775

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.19  E-value=1.9e-10  Score=121.56  Aligned_cols=225  Identities=9%  Similarity=-0.009  Sum_probs=173.2

Q ss_pred             HHHHHhcccchHHHHHHHHHHHHc----CCCC-hHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC-----hhHHH
Q 004369          394 ILTICSRLVALEQGEQIHALTLKT----GFLS-DVVVGTALVNMYKKCGRIERASRVFVEMST-----RT-----LISWT  458 (758)
Q Consensus       394 ll~a~~~~~~~~~a~~i~~~~~~~----~~~~-~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~  458 (758)
                      ....+...|+++.|...+..+.+.    +-++ ...++..+...|...|++++|...+++..+     .+     ..+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            445567889999999999988764    2122 356888999999999999999998887541     11     25788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccccHHHHHHHHHHhhhh---cCC-CCCHHHHH
Q 004369          459 SMITGFANHSLSHQALQLFEDMLLAGV-RPN----QVTFVGALAACSNAGMVYEALGYFEMMQKE---YKI-KPVMDHYM  529 (758)
Q Consensus       459 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~~~~  529 (758)
                      .+...|...|++++|+..|++..+... .++    ..++..+...+...|++++|...+++..+.   .+. +.....+.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            899999999999999999999876311 112    247888888999999999999999988761   133 23367788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHc-CC-----CCC-HHHHHHHHHHHHHcCC---hhHHHHHHHHHhccCCCCchhHHHHHH
Q 004369          530 CLIDMFVRLGCIEEAFDFIKKM-DF-----EPN-EVIWSVFIAGCRRHGN---MELGFYAAEQLLKLKPKDCESYAMLLD  599 (758)
Q Consensus       530 ~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~  599 (758)
                      .+...|.+.|++++|.+.+++. ..     .|. ...+..+...+...|+   +++|...+++. ...|.....+..|+.
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~  347 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK  347 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence            9999999999999999999887 11     222 2335667777888888   77777777776 333455668889999


Q ss_pred             HhhhCCCchhHHHHHHHhhh
Q 004369          600 IFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       600 ~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +|...|++++|...++...+
T Consensus       348 ~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          348 YYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999998765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.19  E-value=9.5e-10  Score=102.23  Aligned_cols=168  Identities=13%  Similarity=0.021  Sum_probs=144.4

Q ss_pred             HHHHhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004369          423 VVVGTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAAC  499 (758)
Q Consensus       423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  499 (758)
                      ...+..+...|...|++++|...|+++..   .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            45667788889999999999999999874   366789999999999999999999999998852 33567888888899


Q ss_pred             hccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHH
Q 004369          500 SNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGF  577 (758)
Q Consensus       500 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~  577 (758)
                      ...|++++|.++++.+.+.  .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999873  3446788899999999999999999999988 4444 6788999999999999999999


Q ss_pred             HHHHHHhccCCCCchh
Q 004369          578 YAAEQLLKLKPKDCES  593 (758)
Q Consensus       578 ~~~~~~~~~~p~~~~~  593 (758)
                      ..++++++..|+++..
T Consensus       165 ~~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          165 PHFKKANELDEGASVE  180 (186)
T ss_dssp             HHHHHHHHHHHCCCGG
T ss_pred             HHHHHHHHcCCCchhh
Confidence            9999999998887543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.18  E-value=3.8e-10  Score=116.21  Aligned_cols=134  Identities=14%  Similarity=0.035  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HH
Q 004369          456 SWTSMITGFANHSLSHQALQLFEDMLLAGV-RPN----QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MD  526 (758)
Q Consensus       456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~  526 (758)
                      .|..+...|...|++++|+..+++..+... .++    ..++..+...+...|++++|..+++...+...-.++    ..
T Consensus       185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  264 (338)
T 3ro2_A          185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ  264 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence            455566666667777777777666654210 011    235666677777788888888877776542111111    45


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKM-------DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      .+..+...|...|++++|.+.++++       +..+ ...++..+...+...|++++|...+++++++.+.
T Consensus       265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            6777888888888888888888776       1111 1446778888889999999999999999887654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.14  E-value=7.9e-10  Score=116.75  Aligned_cols=222  Identities=10%  Similarity=0.034  Sum_probs=175.4

Q ss_pred             CCChhHHHHHHHHhHhC----CCCC-CHHHHHHHHHHHhcccchHHHHHHHHHHHHc--CC----CChHHHHhHHhhhHH
Q 004369          366 HNGGTEALSIFSKLNSS----GMKP-DLYTFSSILTICSRLVALEQGEQIHALTLKT--GF----LSDVVVGTALVNMYK  434 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--~~----~~~~~~~~~Li~~y~  434 (758)
                      .|++++|+..|++..+.    +-.+ ...++..+...+...|+++.|...+....+.  ..    +....+++.+...|.
T Consensus       116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  195 (383)
T 3ulq_A          116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL  195 (383)
T ss_dssp             TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence            99999999999998763    1122 3357778888899999999999999887763  11    112467888999999


Q ss_pred             hcCCHHHHHHHHHhcCC-----CCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHh
Q 004369          435 KCGRIERASRVFVEMST-----RTL----ISWTSMITGFANHSLSHQALQLFEDMLLA----GVRPN-QVTFVGALAACS  500 (758)
Q Consensus       435 ~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~  500 (758)
                      ..|++++|...|++..+     .+.    .+|..+...|...|++++|+..|++..+.    +..|+ ..++..+...+.
T Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  275 (383)
T 3ulq_A          196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY  275 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence            99999999999987652     222    47888999999999999999999998872    33244 567888889999


Q ss_pred             ccccHHHHHHHHHHhhhhc---CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCh
Q 004369          501 NAGMVYEALGYFEMMQKEY---KIKPVMDHYMCLIDMFVRLGC---IEEAFDFIKKMDFEPN-EVIWSVFIAGCRRHGNM  573 (758)
Q Consensus       501 ~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~  573 (758)
                      +.|++++|..++++..+..   +-+.....+..+...|...|+   +++|+.++++.+..|+ ...+..|...+...|++
T Consensus       276 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~  355 (383)
T 3ulq_A          276 KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNF  355 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCH
Confidence            9999999999999876532   122223346778888999999   9999999999865553 45678899999999999


Q ss_pred             hHHHHHHHHHhccC
Q 004369          574 ELGFYAAEQLLKLK  587 (758)
Q Consensus       574 ~~a~~~~~~~~~~~  587 (758)
                      ++|...+++++++.
T Consensus       356 ~~A~~~~~~al~~~  369 (383)
T 3ulq_A          356 QKASAYFLKVEQVR  369 (383)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.12  E-value=1.9e-08  Score=105.59  Aligned_cols=254  Identities=11%  Similarity=-0.031  Sum_probs=187.0

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHH----HHHHHHHHHhcccchHHHHHHHHHHHHc----CCC-ChHHHHhHHhhhHHhc
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLY----TFSSILTICSRLVALEQGEQIHALTLKT----GFL-SDVVVGTALVNMYKKC  436 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~Li~~y~~~  436 (758)
                      .|++++|...+++........+..    .+..+...+...|+++.|...+....+.    +.. ....++..+...|...
T Consensus        27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  106 (373)
T 1hz4_A           27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  106 (373)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence            899999999999987754222332    4455566778899999999999877653    211 1123466788889999


Q ss_pred             CCHHHHHHHHHhcCC----------C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHHhc
Q 004369          437 GRIERASRVFVEMST----------R-TLISWTSMITGFANHSLSHQALQLFEDMLLAGVR--P--NQVTFVGALAACSN  501 (758)
Q Consensus       437 g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~a~~~  501 (758)
                      |++++|...+++...          + ....+..+...+...|++++|...+++.......  |  ...++..+...+..
T Consensus       107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  186 (373)
T 1hz4_A          107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA  186 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence            999999999887541          1 1245677888899999999999999998874322  1  13567777888899


Q ss_pred             cccHHHHHHHHHHhhhhcCCCCC-HHHHH----HHHHHHHHcCCHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHHc
Q 004369          502 AGMVYEALGYFEMMQKEYKIKPV-MDHYM----CLIDMFVRLGCIEEAFDFIKKM-DFEPN-----EVIWSVFIAGCRRH  570 (758)
Q Consensus       502 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~  570 (758)
                      .|++++|..+++.......-... .....    ..+..+...|++++|...+++. ...|.     ...+..+...+...
T Consensus       187 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~  266 (373)
T 1hz4_A          187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL  266 (373)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHc
Confidence            99999999999988753221111 11111    3445578999999999999998 32232     23567788889999


Q ss_pred             CChhHHHHHHHHHhccCCC-----C-chhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          571 GNMELGFYAAEQLLKLKPK-----D-CESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       571 g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      |++++|...++++++..+.     + ...+..++.+|...|+.++|...++...+
T Consensus       267 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          267 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9999999999999876432     1 23777889999999999999999888765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.09  E-value=8.7e-10  Score=124.62  Aligned_cols=164  Identities=13%  Similarity=0.130  Sum_probs=144.7

Q ss_pred             CChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 004369          420 LSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGA  495 (758)
Q Consensus       420 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l  495 (758)
                      +.+...++.|...|.+.|++++|.+.|++..   ..+..+|+.+...|.+.|++++|++.|++.++  +.|+ ...|..+
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL   83 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM   83 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            3457788999999999999999999999865   44678999999999999999999999999998  4666 6789999


Q ss_pred             HHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC
Q 004369          496 LAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGN  572 (758)
Q Consensus       496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~  572 (758)
                      ..++...|++++|.+.|+++.+.   .| +...|..+..+|.+.|++++|++.|++. .+.| +...|..|...+...|+
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence            99999999999999999999763   44 4788999999999999999999999998 6677 57789999999999999


Q ss_pred             hhHHHHHHHHHhccCC
Q 004369          573 MELGFYAAEQLLKLKP  588 (758)
Q Consensus       573 ~~~a~~~~~~~~~~~p  588 (758)
                      +++|.+.+++++++.|
T Consensus       161 ~~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          161 WTDYDERMKKLVSIVA  176 (723)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCh
Confidence            9999999999988654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.09  E-value=3e-09  Score=111.98  Aligned_cols=223  Identities=11%  Similarity=0.010  Sum_probs=167.4

Q ss_pred             HHHhcccchHHHHHHHHHHHHcC--CC---ChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC-----hhHHHHH
Q 004369          396 TICSRLVALEQGEQIHALTLKTG--FL---SDVVVGTALVNMYKKCGRIERASRVFVEMST-----RT-----LISWTSM  460 (758)
Q Consensus       396 ~a~~~~~~~~~a~~i~~~~~~~~--~~---~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l  460 (758)
                      ..+...|+++.|...+..+.+..  ..   ....++..+...|...|+++.|...+++...     .+     ..+++.+
T Consensus       109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  188 (378)
T 3q15_A          109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI  188 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence            34577899999999999887641  11   1356788899999999999999888877541     11     3578889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhc---CCCCCHHHHHHHH
Q 004369          461 ITGFANHSLSHQALQLFEDMLLA----GVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEY---KIKPVMDHYMCLI  532 (758)
Q Consensus       461 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li  532 (758)
                      ...|...|++++|++.|++..+.    +-.+. ..++..+...+...|++++|..++++..+..   +.+.....+..+.
T Consensus       189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  268 (378)
T 3q15_A          189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS  268 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence            99999999999999999988763    11111 3467788889999999999999999887611   2222367788899


Q ss_pred             HHHHHcCCHHHHHHHHHHc----CC--CCC-HHHHHHHHHHHHHcCC---hhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369          533 DMFVRLGCIEEAFDFIKKM----DF--EPN-EVIWSVFIAGCRRHGN---MELGFYAAEQLLKLKPKDCESYAMLLDIFV  602 (758)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  602 (758)
                      ..|.+.|++++|.+.+++.    ..  .|. ...+..+...+...++   +++|...+++. ...|.....+..++..|.
T Consensus       269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~  347 (378)
T 3q15_A          269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE  347 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence            9999999999999999987    21  222 3345556666666777   77777777762 223444567788999999


Q ss_pred             hCCCchhHHHHHHHhhh
Q 004369          603 SAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       603 ~~g~~~~a~~~~~~m~~  619 (758)
                      ..|++++|.+.++...+
T Consensus       348 ~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          348 SSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            99999999999988754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.06  E-value=2e-09  Score=107.75  Aligned_cols=197  Identities=13%  Similarity=0.148  Sum_probs=122.2

Q ss_pred             HHHHhHHhhhHHhcCCHHHHHHHHHhcCC-----------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 004369          423 VVVGTALVNMYKKCGRIERASRVFVEMST-----------RTLISWTSMITGFANHSLSHQALQLFEDMLLA------GV  485 (758)
Q Consensus       423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~  485 (758)
                      ..++..+...|...|++++|...|++...           ....+|..+...|...|++++|++.|++..+.      .-
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            44555566666666666666666655431           12345666777777777777777777776653      11


Q ss_pred             CCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhc-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-------
Q 004369          486 RPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEY-----KIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-------  551 (758)
Q Consensus       486 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------  551 (758)
                      .|+ ..++..+...+...|++++|..+++++.+..     +..| ....+..+...|.+.|++++|.+.++++       
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK  202 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            233 4567777778888888888888888776521     1122 3566778888888888888888888776       


Q ss_pred             ---CCCCC-HHHHHHHHHHHHHcCChh------HHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          552 ---DFEPN-EVIWSVFIAGCRRHGNME------LGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       552 ---~~~p~-~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                         ...|. ...|..+.......+...      .+...++......|..+..+..|+.+|...|++++|.++++...+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               12332 334444444444333322      222233333333455667888999999999999999999988765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.03  E-value=8e-09  Score=102.42  Aligned_cols=205  Identities=8%  Similarity=-0.023  Sum_probs=125.2

Q ss_pred             hHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---C---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHHH
Q 004369          422 DVVVGTALVNMYKKCGRIERASRVFVEMSTR---T---LISWTSMITGFANHSLSHQALQLFEDMLLAGV-RPN-QVTFV  493 (758)
Q Consensus       422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~  493 (758)
                      +...+-.+...+.+.|++++|...|+++...   +   ...|..+..+|.+.|++++|+..|++..+... .|+ ...+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            3445555556666666666666666665421   2   34555666666666666666666666665321 111 23344


Q ss_pred             HHHHHHhc--------cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004369          494 GALAACSN--------AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIA  565 (758)
Q Consensus       494 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~  565 (758)
                      .+..++..        .|++++|...|+.+.+.+.-.+.  ....+.......+.+               ...+..+..
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~~~~~~~~~---------------~~~~~~la~  156 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL--VDDATQKIRELRAKL---------------ARKQYEAAR  156 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT--HHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh--HHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence            44445555        66666666666666553221111  111111100000000               112466788


Q ss_pred             HHHHcCChhHHHHHHHHHhccCCCC---chhHHHHHHHhhhC----------CCchhHHHHHHHhhhCCCCCCCceeEEE
Q 004369          566 GCRRHGNMELGFYAAEQLLKLKPKD---CESYAMLLDIFVSA----------GRWEDVAVVKNLTREEKLSETDDWSWIR  632 (758)
Q Consensus       566 ~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~~  632 (758)
                      .+...|++++|...++++++..|++   +..+..++.+|...          |++++|...++.+.+...          
T Consensus       157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----------  226 (261)
T 3qky_A          157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----------  226 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred             HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence            8999999999999999999999984   45788999999877          899999999999886322          


Q ss_pred             ECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 004369          633 IKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKC  666 (758)
Q Consensus       633 ~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~  666 (758)
                                   .+|...+....+.++..++.+
T Consensus       227 -------------~~~~~~~a~~~l~~~~~~~~~  247 (261)
T 3qky_A          227 -------------DSPLLRTAEELYTRARQRLTE  247 (261)
T ss_dssp             -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred             -------------CChHHHHHHHHHHHHHHHHHH
Confidence                         455566666677777766654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.99  E-value=7.8e-09  Score=104.40  Aligned_cols=155  Identities=10%  Similarity=-0.072  Sum_probs=75.8

Q ss_pred             HHhcccchHHHHHHHHHHHHc----CCCCh-HHHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHH
Q 004369          397 ICSRLVALEQGEQIHALTLKT----GFLSD-VVVGTALVNMYKKCGRIERASRVFVEMST-----RT----LISWTSMIT  462 (758)
Q Consensus       397 a~~~~~~~~~a~~i~~~~~~~----~~~~~-~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~  462 (758)
                      .+...|++++|...+....+.    |.+++ ..+++.+...|.+.|++++|...|++...     .+    ..+|+.+..
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445566777776666655442    21111 34556666666666666666666555431     11    134555555


Q ss_pred             HHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH-----HHHHHH
Q 004369          463 GFANH-SLSHQALQLFEDMLLAGVRP-N----QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM-----DHYMCL  531 (758)
Q Consensus       463 ~~~~~-g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l  531 (758)
                      .|... |++++|+..|++..+..... +    ..++..+...+.+.|++++|..+|+.+.+...-.+..     ..|..+
T Consensus       126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  205 (292)
T 1qqe_A          126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK  205 (292)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            55553 55555555555554421000 0    2234445555555555555555555554421111111     134444


Q ss_pred             HHHHHHcCCHHHHHHHHHHc
Q 004369          532 IDMFVRLGCIEEAFDFIKKM  551 (758)
Q Consensus       532 i~~~~~~g~~~~A~~~~~~m  551 (758)
                      ..++...|++++|...+++.
T Consensus       206 g~~~~~~g~~~~A~~~~~~a  225 (292)
T 1qqe_A          206 GLCQLAATDAVAAARTLQEG  225 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHGG
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            55555555555555555554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.98  E-value=5.7e-09  Score=105.43  Aligned_cols=201  Identities=11%  Similarity=0.026  Sum_probs=147.4

Q ss_pred             chHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCCHHHH
Q 004369          403 ALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST-----RT----LISWTSMITGFANHSLSHQA  473 (758)
Q Consensus       403 ~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A  473 (758)
                      ++++|...+..+               ...|...|++++|...|++...     .+    ..+|+.+...|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            477777776655               4467788999999998887542     12    45899999999999999999


Q ss_pred             HHHHHHHHHcCC---CCC--HHHHHHHHHHHhcc-ccHHHHHHHHHHhhhhcCCCCC----HHHHHHHHHHHHHcCCHHH
Q 004369          474 LQLFEDMLLAGV---RPN--QVTFVGALAACSNA-GMVYEALGYFEMMQKEYKIKPV----MDHYMCLIDMFVRLGCIEE  543 (758)
Q Consensus       474 ~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~  543 (758)
                      +..|++..+...   .+.  ..++..+...|... |++++|...|++..+...-..+    ...+..+...|.+.|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            999999876311   111  35788888899996 9999999999998763211111    3568889999999999999


Q ss_pred             HHHHHHHc-CCCCC---H-----HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh-----HHHHHHHhh--hCCCc
Q 004369          544 AFDFIKKM-DFEPN---E-----VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES-----YAMLLDIFV--SAGRW  607 (758)
Q Consensus       544 A~~~~~~m-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~  607 (758)
                      |++.+++. ...|+   .     ..|..+...+...|++++|...+++.++++|+....     +..|+..|.  ..+++
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~  256 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL  256 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence            99999988 33332   1     156778888999999999999999999999975443     344666664  55778


Q ss_pred             hhHHHHHHHhh
Q 004369          608 EDVAVVKNLTR  618 (758)
Q Consensus       608 ~~a~~~~~~m~  618 (758)
                      ++|.+.++.+.
T Consensus       257 ~~A~~~~~~~~  267 (292)
T 1qqe_A          257 SEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHTTSS
T ss_pred             HHHHHHhccCC
Confidence            88887776553

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.96  E-value=1.1e-09  Score=98.30  Aligned_cols=138  Identities=9%  Similarity=-0.036  Sum_probs=97.8

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004369          465 ANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEE  543 (758)
Q Consensus       465 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  543 (758)
                      ...|++++|++.+++...  ..|+ ...+..+...|.+.|++++|.+.|++..+.  -+-+...|..+..+|.+.|++++
T Consensus         8 ~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            8 RSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             CCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHH
Confidence            344555666666655543  2233 234445556667777777777777776652  12246677778888888888888


Q ss_pred             HHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHH-HHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369          544 AFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYA-AEQLLKLKPKDCESYAMLLDIFVSAGR  606 (758)
Q Consensus       544 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~  606 (758)
                      |+..|++. .+.| +..+|..+...+.+.|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus        84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            88888877 5566 577888899999999998776654 589999999999999999888888775

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.95  E-value=2.1e-07  Score=92.11  Aligned_cols=233  Identities=10%  Similarity=-0.054  Sum_probs=161.4

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRV  445 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~  445 (758)
                      .|.+..++.-..++..  ..+ .....-+.+++...|+....         ..-.|.......+...+ ..+    |...
T Consensus        26 ~G~yq~~i~e~~~~~~--~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~   88 (310)
T 3mv2_B           26 TGNFVQCLQEIEKFSK--VTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE   88 (310)
T ss_dssp             TTCHHHHTHHHHTSSC--CCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred             hhHHHHHHHHHHhcCc--cch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence            7888888874433321  122 23334445666666665431         11223333444333333 322    6777


Q ss_pred             HHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCC
Q 004369          446 FVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKI  521 (758)
Q Consensus       446 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~  521 (758)
                      |++...   ++..++..+..++...|++++|++++.+.+..|..++ ...+..++..+.+.|+.+.|.+.++.|.+.   
T Consensus        89 l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---  165 (310)
T 3mv2_B           89 LENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---  165 (310)
T ss_dssp             HHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence            877653   4556667888899999999999999999877654333 556777888999999999999999999753   


Q ss_pred             CC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhcc-----
Q 004369          522 KP-----VMDHYMCLIDM--FVRLG--CIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKL-----  586 (758)
Q Consensus       522 ~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----  586 (758)
                      .|     +..+...|..+  ....|  +.++|..+|+++ ...|+..+-..|+.++.+.|++++|+..++.+.+.     
T Consensus       166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~  245 (310)
T 3mv2_B          166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVE  245 (310)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred             CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            56     24455555555  33334  999999999999 44566333344555888999999999999988876     


Q ss_pred             -----CCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          587 -----KPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       587 -----~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                           +|+|+.++..++.++...|+  +|.++++++++.
T Consensus       246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence                 48899999888888888887  889999999873

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.94  E-value=9.6e-08  Score=100.41  Aligned_cols=221  Identities=11%  Similarity=0.056  Sum_probs=172.5

Q ss_pred             CCChhHHHHHHHHhHhCCC-CCC----HHHHHHHHHHHhcccchHHHHHHHHHHHHc----CC-C-ChHHHHhHHhhhHH
Q 004369          366 HNGGTEALSIFSKLNSSGM-KPD----LYTFSSILTICSRLVALEQGEQIHALTLKT----GF-L-SDVVVGTALVNMYK  434 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~-~-~~~~~~~~Li~~y~  434 (758)
                      .|++++|+..|++...... .++    ..++..+...+...|+++.|...+....+.    +. . ....+++.+...|.
T Consensus       114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~  193 (378)
T 3q15_A          114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD  193 (378)
T ss_dssp             TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            9999999999999876321 122    346777888899999999999999887653    11 1 13567888999999


Q ss_pred             hcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhc
Q 004369          435 KCGRIERASRVFVEMST-----RT----LISWTSMITGFANHSLSHQALQLFEDMLLA----GVRPNQVTFVGALAACSN  501 (758)
Q Consensus       435 ~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a~~~  501 (758)
                      ..|++++|.+.|++..+     .+    ..+++.+...|...|++++|+..|++..+.    +.+....++..+...+.+
T Consensus       194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  273 (378)
T 3q15_A          194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK  273 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence            99999999999987652     22    247888999999999999999999998871    222226678888889999


Q ss_pred             cccHHHHHHHHHHhhhhcCC---CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChh
Q 004369          502 AGMVYEALGYFEMMQKEYKI---KPVMDHYMCLIDMFVRLGC---IEEAFDFIKKMDFEPN-EVIWSVFIAGCRRHGNME  574 (758)
Q Consensus       502 ~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~  574 (758)
                      .|++++|..++++..+...-   +.....+..+...|...|+   +++|+..+++.+..|+ ...+..+...+...|+++
T Consensus       274 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~  353 (378)
T 3q15_A          274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFE  353 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHH
Confidence            99999999999998774322   2224556777778888888   9999999999755443 345778899999999999


Q ss_pred             HHHHHHHHHhcc
Q 004369          575 LGFYAAEQLLKL  586 (758)
Q Consensus       575 ~a~~~~~~~~~~  586 (758)
                      +|...++++++.
T Consensus       354 ~A~~~~~~al~~  365 (378)
T 3q15_A          354 QAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.93  E-value=2.4e-08  Score=98.88  Aligned_cols=203  Identities=9%  Similarity=0.002  Sum_probs=147.1

Q ss_pred             CCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCh---HHHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-C---hhH
Q 004369          386 PDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSD---VVVGTALVNMYKKCGRIERASRVFVEMST--R-T---LIS  456 (758)
Q Consensus       386 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~Li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~  456 (758)
                      .+...+......+...|++++|...+..+++.. +.+   ...+..+...|.+.|++++|...|++...  | +   ...
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            355667777778889999999999999998864 223   67788899999999999999999998763  2 2   346


Q ss_pred             HHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHH
Q 004369          457 WTSMITGFAN--------HSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHY  528 (758)
Q Consensus       457 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~  528 (758)
                      |..+..++..        .|++++|+..|++..+.  .|+....             ..+...+..+...     -...+
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-------------~~a~~~~~~~~~~-----~~~~~  151 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELV-------------DDATQKIRELRAK-----LARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTH-------------HHHHHHHHHHHHH-----HHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhH-------------HHHHHHHHHHHHH-----HHHHH
Confidence            7778888888        99999999999999985  4543211             1111111111110     01235


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHHHHHHc----------CChhHHHHHHHHHhccCCCCch-
Q 004369          529 MCLIDMFVRLGCIEEAFDFIKKM-DFEPN----EVIWSVFIAGCRRH----------GNMELGFYAAEQLLKLKPKDCE-  592 (758)
Q Consensus       529 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~-  592 (758)
                      ..+...|.+.|++++|+..|+++ ...|+    ...+..+..++...          |++++|...++++++..|+++. 
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  231 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL  231 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence            66788899999999999999887 33343    34677788888766          8899999999999999999854 


Q ss_pred             --hHHHHHHHhhhCCCchh
Q 004369          593 --SYAMLLDIFVSAGRWED  609 (758)
Q Consensus       593 --~~~~l~~~~~~~g~~~~  609 (758)
                        ....+..++...|++++
T Consensus       232 ~~a~~~l~~~~~~~~~~~~  250 (261)
T 3qky_A          232 RTAEELYTRARQRLTELEG  250 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence              44455556655555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.92  E-value=3.6e-09  Score=94.80  Aligned_cols=121  Identities=6%  Similarity=-0.031  Sum_probs=102.8

Q ss_pred             HHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC
Q 004369          496 LAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGN  572 (758)
Q Consensus       496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~  572 (758)
                      ...+...|++++|+..++....   ..|+ ...+-.+...|.+.|++++|++.|++. ...| +..+|..+...+...|+
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence            3456678899999999988753   3444 345667899999999999999999998 6677 67889999999999999


Q ss_pred             hhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH-HHHhhh
Q 004369          573 MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV-KNLTRE  619 (758)
Q Consensus       573 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~  619 (758)
                      +++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987765 476665

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.91  E-value=8.8e-08  Score=92.42  Aligned_cols=180  Identities=9%  Similarity=0.011  Sum_probs=112.4

Q ss_pred             HHHhHHhhhHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHH
Q 004369          424 VVGTALVNMYKKCGRIERASRVFVEMST--RT----LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ----VTFV  493 (758)
Q Consensus       424 ~~~~~Li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~  493 (758)
                      ..+..+...+.+.|++++|...|+++..  |+    ...+..+..+|.+.|++++|+..|+++.+.  .|+.    ..+.
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~   82 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence            3444556667777888888888877652  21    245666777778888888888888887764  3332    1233


Q ss_pred             HHHHHHhc------------------cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCC
Q 004369          494 GALAACSN------------------AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEP  555 (758)
Q Consensus       494 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p  555 (758)
                      .+..++..                  .|++++|...|+.+.+.+.-.+.  .+.++.    +.+.+.+..          
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~--a~~a~~----~l~~~~~~~----------  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY--TTDATK----RLVFLKDRL----------  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT--HHHHHH----HHHHHHHHH----------
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh--HHHHHH----HHHHHHHHH----------
Confidence            33333332                  34555555555555442211111  111100    000000000          


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc---hhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369          556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC---ESYAMLLDIFVSAGRWEDVAVVKNLTREEKL  622 (758)
Q Consensus       556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  622 (758)
                       ......+...+...|++++|...++++++..|+++   ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus       147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence             00113456678899999999999999999999876   5688999999999999999999999887654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.91  E-value=2.7e-08  Score=99.34  Aligned_cols=222  Identities=10%  Similarity=0.019  Sum_probs=156.9

Q ss_pred             CCChhHHHHHHHHhHh-------CCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHc------CC-CChHHHHhHHhh
Q 004369          366 HNGGTEALSIFSKLNS-------SGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKT------GF-LSDVVVGTALVN  431 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------~~-~~~~~~~~~Li~  431 (758)
                      .|++++|+.+|++..+       ...+....++..+...+...|++++|...+..+.+.      +. +....++..+..
T Consensus        14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~   93 (283)
T 3edt_B           14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV   93 (283)
T ss_dssp             CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            6777777777776654       122224567788888999999999999999888764      22 334678899999


Q ss_pred             hHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHH
Q 004369          432 MYKKCGRIERASRVFVEMST-------R----TLISWTSMITGFANHSLSHQALQLFEDMLLA------GVRPN-QVTFV  493 (758)
Q Consensus       432 ~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~  493 (758)
                      .|...|++++|...|++...       +    ...+|..+...|...|++++|+..|+++.+.      +-.|+ ..++.
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  173 (283)
T 3edt_B           94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN  173 (283)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            99999999999999988652       1    2457888999999999999999999999874      22343 45788


Q ss_pred             HHHHHHhccccHHHHHHHHHHhhhhc------CCCCC-HHHHHHHHHHHHHcC------CHHHHHHHHHHcC-CCC-CHH
Q 004369          494 GALAACSNAGMVYEALGYFEMMQKEY------KIKPV-MDHYMCLIDMFVRLG------CIEEAFDFIKKMD-FEP-NEV  558 (758)
Q Consensus       494 ~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~g------~~~~A~~~~~~m~-~~p-~~~  558 (758)
                      .+...+...|++++|..+++.+.+..      ...+. ...|..+...+...+      .+.++...++..+ ..| ...
T Consensus       174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (283)
T 3edt_B          174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT  253 (283)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            88889999999999999999887631      11222 223333333333322      3445555555553 334 355


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369          559 IWSVFIAGCRRHGNMELGFYAAEQLLKLK  587 (758)
Q Consensus       559 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  587 (758)
                      ++..+...+...|++++|...++++++..
T Consensus       254 ~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          254 TLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            78899999999999999999999998753

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.90  E-value=1.3e-08  Score=115.55  Aligned_cols=167  Identities=8%  Similarity=-0.076  Sum_probs=120.7

Q ss_pred             HhcCCHHHHHHHHHhcC-----------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 004369          434 KKCGRIERASRVFVEMS-----------TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSN  501 (758)
Q Consensus       434 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~  501 (758)
                      ...|++++|.+.|++..           ..+...|..+...|.+.|++++|++.|+++.+.  .|+ ...+..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence            45677777777776654           335567777777788888888888888887774  343 5566777777778


Q ss_pred             cccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHH
Q 004369          502 AGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFY  578 (758)
Q Consensus       502 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~  578 (758)
                      .|++++|...|+++.+.   .| +...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|..
T Consensus       480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence            88888888888877652   23 35677778888888888888 7777776 4555 56677888888888888888888


Q ss_pred             HHHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369          579 AAEQLLKLKPKDCESYAMLLDIFVSAGR  606 (758)
Q Consensus       579 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~  606 (758)
                      .++++++++|++...+..++.+|...|+
T Consensus       556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          556 TLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            8888888888888888888888776655

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.89  E-value=2.8e-08  Score=86.44  Aligned_cols=123  Identities=16%  Similarity=0.291  Sum_probs=68.4

Q ss_pred             HHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC
Q 004369          495 ALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGN  572 (758)
Q Consensus       495 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~  572 (758)
                      +...+...|++++|..+++.+.+.  .+.+...+..+...+...|++++|.+.++++ ...| +...|..+...+...|+
T Consensus         7 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (136)
T 2fo7_A            7 LGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD   84 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence            333444444444444444444331  1122344444555555555555555555554 2222 34455666666666666


Q ss_pred             hhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          573 MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       573 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +++|...++++++..|.++..+..++.+|...|++++|.+.++.+.+
T Consensus        85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            66666666666666666666666666777777777777666666554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.87  E-value=4.7e-07  Score=94.86  Aligned_cols=224  Identities=11%  Similarity=0.039  Sum_probs=166.6

Q ss_pred             HHHhcccchHHHHHHHHHHHHcCCCChH----HHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CCh----hHHHHHHH
Q 004369          396 TICSRLVALEQGEQIHALTLKTGFLSDV----VVGTALVNMYKKCGRIERASRVFVEMST-----RTL----ISWTSMIT  462 (758)
Q Consensus       396 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~----~~~~~Li~~y~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~  462 (758)
                      ..+...|+++.+...+....+..-..+.    .+++.+...|...|++++|...+++...     .+.    .+++.+..
T Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            3456789999999999988775422222    2567778889999999999999987652     222    34667788


Q ss_pred             HHHhcCCHHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCC-CC--CHHHHHHHH
Q 004369          463 GFANHSLSHQALQLFEDMLLA----GVR--PN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKI-KP--VMDHYMCLI  532 (758)
Q Consensus       463 ~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p--~~~~~~~li  532 (758)
                      .+...|++++|+..+++..+.    +..  |. ...+..+...+...|++++|..++++..+...- .+  ....+..+.
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  181 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  181 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence            899999999999999988763    222  33 345666777889999999999999988753211 11  245678889


Q ss_pred             HHHHHcCCHHHHHHHHHHc----CCCCCHHHHHH-----HHHHHHHcCChhHHHHHHHHHhccCCCCc----hhHHHHHH
Q 004369          533 DMFVRLGCIEEAFDFIKKM----DFEPNEVIWSV-----FIAGCRRHGNMELGFYAAEQLLKLKPKDC----ESYAMLLD  599 (758)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~  599 (758)
                      ..+...|++++|...+++.    +...+...|..     .+..+...|++++|...++++++..|.+.    ..+..++.
T Consensus       182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~  261 (373)
T 1hz4_A          182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  261 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence            9999999999999999886    21112122322     33447789999999999999998776542    24678899


Q ss_pred             HhhhCCCchhHHHHHHHhhh
Q 004369          600 IFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       600 ~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ++...|++++|...++...+
T Consensus       262 ~~~~~g~~~~A~~~l~~a~~  281 (373)
T 1hz4_A          262 AQILLGEFEPAEIVLEELNE  281 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999988754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.86  E-value=6.3e-08  Score=84.20  Aligned_cols=131  Identities=15%  Similarity=0.294  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 004369          456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMF  535 (758)
Q Consensus       456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  535 (758)
                      .|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+.  .+.+...+..+...+
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence            56777788888888888888888887753 234667777777888888999999988888763  234566788888889


Q ss_pred             HHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          536 VRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       536 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      .+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++.+|+
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            9999999999998887 3334 5777888888999999999999999999888875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.85  E-value=4.9e-08  Score=98.13  Aligned_cols=176  Identities=9%  Similarity=-0.033  Sum_probs=142.3

Q ss_pred             CHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhh
Q 004369          438 RIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQ  516 (758)
Q Consensus       438 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~  516 (758)
                      ..+...+.+......+...+..+...+...|++++|+..|++..+.  .|+ ...+..+...+...|++++|...++.+.
T Consensus       101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~  178 (287)
T 3qou_A          101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIP  178 (287)
T ss_dssp             CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            3455566666666566677788888899999999999999999884  555 5678888889999999999999999886


Q ss_pred             hhcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC--c
Q 004369          517 KEYKIKPVMDHYMC-LIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD--C  591 (758)
Q Consensus       517 ~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~  591 (758)
                      ..   .|+...... ..-.+.+.|+.++|.+.+++. ...| +...+..|...+...|++++|...++++++.+|++  .
T Consensus       179 ~~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~  255 (287)
T 3qou_A          179 LQ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG  255 (287)
T ss_dssp             GG---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred             hh---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence            53   455443332 233466778888899888887 5556 67889999999999999999999999999999987  8


Q ss_pred             hhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369          592 ESYAMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       592 ~~~~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                      ..+..|+.+|...|+.++|...++...
T Consensus       256 ~a~~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          256 QTRXTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            899999999999999999988776643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.82  E-value=1.8e-08  Score=89.80  Aligned_cols=101  Identities=15%  Similarity=-0.015  Sum_probs=91.5

Q ss_pred             CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369          520 KIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM  596 (758)
Q Consensus       520 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  596 (758)
                      .+.|+ ...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++++|+++..|..
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~  109 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH  109 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence            45554 567888889999999999999999998 6667 68889999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCchhHHHHHHHhhhC
Q 004369          597 LLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       597 l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      ++.+|...|++++|...++...+.
T Consensus       110 lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          110 TGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999998873

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.82  E-value=3.2e-08  Score=85.46  Aligned_cols=94  Identities=12%  Similarity=0.147  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh
Q 004369          526 DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS  603 (758)
Q Consensus       526 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  603 (758)
                      ..+......|.+.|++++|++.|++. ...| +..+|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            34455555566666666666666555 3334 455556666666666666666666666666666666666666666666


Q ss_pred             CCCchhHHHHHHHhhh
Q 004369          604 AGRWEDVAVVKNLTRE  619 (758)
Q Consensus       604 ~g~~~~a~~~~~~m~~  619 (758)
                      .|++++|.+.++...+
T Consensus        94 ~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           94 MREWSKAQRAYEDALQ  109 (126)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            6666666666665554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.78  E-value=1.9e-08  Score=89.81  Aligned_cols=101  Identities=11%  Similarity=0.077  Sum_probs=88.8

Q ss_pred             CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369          520 KIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM  596 (758)
Q Consensus       520 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  596 (758)
                      .+.| +...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++++|+++..+..
T Consensus        15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   94 (148)
T 2vgx_A           15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH   94 (148)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred             cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence            3444 3566777888999999999999999988 5556 67889999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCchhHHHHHHHhhhC
Q 004369          597 LLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       597 l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      ++.+|...|++++|.+.++...+.
T Consensus        95 lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           95 AAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999999988763

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.77  E-value=6.1e-07  Score=88.79  Aligned_cols=181  Identities=13%  Similarity=0.027  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004369          407 GEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST-----RTLISWTSMITGFANHSLSHQALQLFEDML  481 (758)
Q Consensus       407 a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  481 (758)
                      +...++...+.+ .++......+..+|...|++++|++++.+...     .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            455566555554 34444556888899999999999999998743     345678888999999999999999999998


Q ss_pred             HcCCCC-----CHHHHHHHHHH--Hhccc--cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-
Q 004369          482 LAGVRP-----NQVTFVGALAA--CSNAG--MVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-  551 (758)
Q Consensus       482 ~~g~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-  551 (758)
                      +  ..|     +..+...+..+  ....|  ++.+|..+|+++.+.   .|+...-..+..++.+.|++++|.+.++.+ 
T Consensus       164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            8  467     35666666656  33334  899999999999764   354333344445899999999999999875 


Q ss_pred             CC----------CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHH
Q 004369          552 DF----------EP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYA  595 (758)
Q Consensus       552 ~~----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  595 (758)
                      ..          .| |..+.-.++......|+  +|.++++++.+..|+++....
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence            22          25 56666567666667786  889999999999999876543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.76  E-value=6e-08  Score=83.71  Aligned_cols=115  Identities=12%  Similarity=-0.008  Sum_probs=95.5

Q ss_pred             CCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHH
Q 004369          485 VRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWS  561 (758)
Q Consensus       485 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~  561 (758)
                      +.|+ ...+......+.+.|++++|.+.|++..+.  -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|.
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   85 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI   85 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence            4555 345666777888889999999998888763  2345778888999999999999999999887 5566 577899


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh
Q 004369          562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF  601 (758)
Q Consensus       562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  601 (758)
                      .+..++...|++++|...++++++++|+++.++..|.+++
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999888887654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.75  E-value=7e-08  Score=89.05  Aligned_cols=153  Identities=10%  Similarity=0.036  Sum_probs=87.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH-HHHc
Q 004369          461 ITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDM-FVRL  538 (758)
Q Consensus       461 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~  538 (758)
                      ...+...|++++|+..|++..+.  .|+ ...+..+...+...|++++|...++.+.+.   .|+...+..+... +...
T Consensus        13 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A           13 VSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence            33444444555555544444331  222 334444444455555555555555544332   1222211111111 1111


Q ss_pred             CCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC--chhHHHHHHHhhhCCCchhHHHHH
Q 004369          539 GCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD--CESYAMLLDIFVSAGRWEDVAVVK  614 (758)
Q Consensus       539 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~  614 (758)
                      +...+|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+.  +..+..++.+|...|+.++|...+
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            1222355556555 4455 56778888888888888888888888888888764  558888888888888888888877


Q ss_pred             HHhh
Q 004369          615 NLTR  618 (758)
Q Consensus       615 ~~m~  618 (758)
                      +...
T Consensus       168 ~~al  171 (176)
T 2r5s_A          168 RRQL  171 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.74  E-value=5.3e-07  Score=85.94  Aligned_cols=171  Identities=6%  Similarity=-0.110  Sum_probs=125.1

Q ss_pred             HHHHHHhcC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc----cHHHHHHHHHHhh
Q 004369          442 ASRVFVEMS-TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAG----MVYEALGYFEMMQ  516 (758)
Q Consensus       442 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~  516 (758)
                      |.+.|++.. ..++.++..+...|...+++++|++.|++..+.|   +...+..+...|.. +    ++++|.++|+...
T Consensus         5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            334444333 3456667777777777788888888888877765   45555666666666 5    7888888888876


Q ss_pred             hhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHH----cCChhHHHHHHHHHh
Q 004369          517 KEYKIKPVMDHYMCLIDMFVR----LGCIEEAFDFIKKM-DFEPN---EVIWSVFIAGCRR----HGNMELGFYAAEQLL  584 (758)
Q Consensus       517 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~  584 (758)
                      +. +   +...+..|..+|..    .+++++|++.|++. ...|.   ...+..|...|..    .++.++|...++++.
T Consensus        81 ~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           81 EA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            52 2   45667777777776    77888888888887 44443   6778888888887    778999999999998


Q ss_pred             ccCCCCchhHHHHHHHhhhC-C-----CchhHHHHHHHhhhCC
Q 004369          585 KLKPKDCESYAMLLDIFVSA-G-----RWEDVAVVKNLTREEK  621 (758)
Q Consensus       585 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~  621 (758)
                      +. |.++..+..|+.+|... |     ++++|...++...+.|
T Consensus       157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            88 66677888899998754 3     8899999998887754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.74  E-value=8.4e-08  Score=106.94  Aligned_cols=159  Identities=11%  Similarity=0.015  Sum_probs=125.8

Q ss_pred             cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHH
Q 004369          436 CGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGY  511 (758)
Q Consensus       436 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~  511 (758)
                      .|++++|.+.|++..+   .+...|..+...|...|++++|++.|++..+.  .|+ ...+..+..++...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4789999999998763   35678999999999999999999999999984  554 67888888999999999999999


Q ss_pred             HHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc---CChhHHHHHHHHHhcc
Q 004369          512 FEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH---GNMELGFYAAEQLLKL  586 (758)
Q Consensus       512 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~  586 (758)
                      +++..+.  .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+...   |+.++|...++++++.
T Consensus        80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            9999873  2334788999999999999999999999998 5556 577899999999999   9999999999999999


Q ss_pred             CCCCchhHHHHH
Q 004369          587 KPKDCESYAMLL  598 (758)
Q Consensus       587 ~p~~~~~~~~l~  598 (758)
                      +|++...+..++
T Consensus       158 ~p~~~~~~~~l~  169 (568)
T 2vsy_A          158 GVGAVEPFAFLS  169 (568)
T ss_dssp             TCCCSCHHHHTT
T ss_pred             CCcccChHHHhC
Confidence            999988888776

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.71  E-value=1.7e-07  Score=106.49  Aligned_cols=190  Identities=13%  Similarity=0.000  Sum_probs=151.3

Q ss_pred             hcccchHHHHHHHHHHH--------HcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhc
Q 004369          399 SRLVALEQGEQIHALTL--------KTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANH  467 (758)
Q Consensus       399 ~~~~~~~~a~~i~~~~~--------~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~  467 (758)
                      ...|++++|.+.+..+.        +. .+.+...+..+...|.+.|++++|.+.|++..   ..+...|..+..+|...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            77899999999999888        32 24567788899999999999999999999876   45778999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004369          468 SLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFD  546 (758)
Q Consensus       468 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  546 (758)
                      |++++|++.|++..+.  .|+ ...+..+..++.+.|++++ .+.|+++.+.  -+.+...|..+..+|.+.|++++|++
T Consensus       481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999984  554 6778888889999999999 9999999763  23346789999999999999999999


Q ss_pred             HHHHc-CCCCC-HHHHHHHHHHHHHcCC-----hhHHHHHHHHHhccCCCCchhH
Q 004369          547 FIKKM-DFEPN-EVIWSVFIAGCRRHGN-----MELGFYAAEQLLKLKPKDCESY  594 (758)
Q Consensus       547 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~  594 (758)
                      .|+++ ...|+ ...|..+..++...++     .+...++.+.+.++.+.++...
T Consensus       556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~  610 (681)
T 2pzi_A          556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL  610 (681)
T ss_dssp             HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred             HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence            99998 77886 5678888888766555     3444455555555555554443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.70  E-value=1.7e-07  Score=89.02  Aligned_cols=127  Identities=10%  Similarity=0.017  Sum_probs=94.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHc
Q 004369          460 MITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRL  538 (758)
Q Consensus       460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~  538 (758)
                      +...|.+.|++++|+..|++..+.  .|+ ...+..+..++...|++++|...|+++.+.  -+.+...|..+...|...
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT  135 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            788888999999999999998884  454 667888888889999999999999988763  223467788888887766


Q ss_pred             CC--HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369          539 GC--IEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD  590 (758)
Q Consensus       539 g~--~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  590 (758)
                      |.  .+++...+++. ...|....|..+..++...|++++|+..+++++++.|++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          136 AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             hHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            54  34556666665 222233345556667777889999999999999999973

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.70  E-value=1.6e-07  Score=104.59  Aligned_cols=146  Identities=10%  Similarity=-0.058  Sum_probs=99.2

Q ss_pred             ccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHH
Q 004369          401 LVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLF  477 (758)
Q Consensus       401 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~  477 (758)
                      .|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+   .+...|..+...|...|++++|++.|
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            367778888887776653 34567788888888888888888888887653   35667888888888888888888888


Q ss_pred             HHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHc
Q 004369          478 EDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRL---GCIEEAFDFIKKM  551 (758)
Q Consensus       478 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m  551 (758)
                      ++..+.  .|+ ...+..+..++...|++++|.+.++++.+.  .+.+...+..+...+...   |+.++|.+.+++.
T Consensus        81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            888874  344 567777888888888888888888888763  223466777888888888   8888888888877

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.69  E-value=4.9e-07  Score=91.83  Aligned_cols=219  Identities=12%  Similarity=0.052  Sum_probs=152.3

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRV  445 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~  445 (758)
                      .|++++|.+++++..+... ..   +      +...++++.|...+..+               ...|...|++++|...
T Consensus         4 ~~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~   58 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA   58 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence            5778888888887765311 10   0      11135666666655543               4567778888888888


Q ss_pred             HHhcCC-----CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhccccHHHHHHH
Q 004369          446 FVEMST-----RT----LISWTSMITGFANHSLSHQALQLFEDMLLAGV---RPN--QVTFVGALAACSNAGMVYEALGY  511 (758)
Q Consensus       446 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~  511 (758)
                      |.+...     .+    ..+|+.+...|...|++++|+..|++..+.-.   .|.  ..++..+...|.. |++++|...
T Consensus        59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~  137 (307)
T 2ifu_A           59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL  137 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            876542     12    34788888999999999999999998765311   122  3567788888888 999999999


Q ss_pred             HHHhhhhcCCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CC---CCC----HHHHHHHHHHHHHcCChhHHHHH
Q 004369          512 FEMMQKEYKIK---P-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DF---EPN----EVIWSVFIAGCRRHGNMELGFYA  579 (758)
Q Consensus       512 ~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~  579 (758)
                      |++..+.+.-.   + ....+..+...|.+.|++++|++.|++. .+   .++    ...+..++..+...|++++|...
T Consensus       138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~  217 (307)
T 2ifu_A          138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC  217 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99887632111   1 1467888999999999999999999987 21   112    23566777778888999999999


Q ss_pred             HHHHhccCCCCchh-----HHHHHHHhhhCCCchhHHH
Q 004369          580 AEQLLKLKPKDCES-----YAMLLDIFVSAGRWEDVAV  612 (758)
Q Consensus       580 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~  612 (758)
                      +++++ +.|.....     ...++..| ..|+.+.+..
T Consensus       218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            99999 98875432     34455555 5677655554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.67  E-value=1.6e-07  Score=82.98  Aligned_cols=99  Identities=8%  Similarity=-0.020  Sum_probs=86.9

Q ss_pred             CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369          521 IKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML  597 (758)
Q Consensus       521 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  597 (758)
                      +.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..+
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            3443 456667788889999999999999987 5556 678899999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCchhHHHHHHHhhh
Q 004369          598 LDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       598 ~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +.+|...|++++|.+.++...+
T Consensus        93 g~~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           93 AECHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999998876

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.66  E-value=2.6e-06  Score=85.19  Aligned_cols=211  Identities=12%  Similarity=0.120  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcC--CHHHHHHHHHhcC---CCChhHHHHHHHHH----Hhc---CCHHH
Q 004369          405 EQGEQIHALTLKTGFLSDVVVGTALVNMYKKCG--RIERASRVFVEMS---TRTLISWTSMITGF----ANH---SLSHQ  472 (758)
Q Consensus       405 ~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~  472 (758)
                      ++|....+.++... +.+..+++.-...+...|  +++++++.++.+.   .++..+|+.-...+    ...   +++++
T Consensus        50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~  128 (306)
T 3dra_A           50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR  128 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred             HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence            46667777776654 445666777777777777  8999999998876   44556777655555    555   78999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHH--HHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCC------HHHH
Q 004369          473 ALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVY--EALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGC------IEEA  544 (758)
Q Consensus       473 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A  544 (758)
                      ++++++++.+.. +-|...|..-...+.+.|.++  +++++++.+.+.  -.-+-..|+.-..++.+.|.      ++++
T Consensus       129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE  205 (306)
T 3dra_A          129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEE  205 (306)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence            999999999853 335667777777777788887  999999999873  23456667766667777776      8999


Q ss_pred             HHHHHHc-CCCC-CHHHHHHHHHHHHHcCCh-hHHHHHHHHHhccC---CCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369          545 FDFIKKM-DFEP-NEVIWSVFIAGCRRHGNM-ELGFYAAEQLLKLK---PKDCESYAMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       545 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                      ++.++++ ...| |...|+.+...+.+.|+. +.....++++++++   |.++..+..|+++|.+.|+.++|.++++.+.
T Consensus       206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~  285 (306)
T 3dra_A          206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK  285 (306)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            9999887 5566 788899999999888874 44667888888876   8888999999999999999999999999987


Q ss_pred             h
Q 004369          619 E  619 (758)
Q Consensus       619 ~  619 (758)
                      +
T Consensus       286 ~  286 (306)
T 3dra_A          286 S  286 (306)
T ss_dssp             H
T ss_pred             h
Confidence            5

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.65  E-value=1.4e-05  Score=86.45  Aligned_cols=373  Identities=10%  Similarity=-0.004  Sum_probs=179.4

Q ss_pred             hCC-CchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCC-hHHH
Q 004369          152 QNS-QPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGS-LNSA  229 (758)
Q Consensus       152 ~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~-~~~A  229 (758)
                      +.| +++.|..+|+.+...  .|.              ++.+.++++|+..+..  .|+..+|...+..-.+.++ .+..
T Consensus         6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i   67 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL   67 (493)
T ss_dssp             ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred             HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence            345 377777888777653  233              7788888888888773  3577777777776666653 2344


Q ss_pred             HHHHhccCC------CCcchHHHHHHHHh----hCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHc---ccCChHHHH
Q 004369          230 IKAFNRIRE------KNVMSWTTVIGACG----ENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCG---TMLSLRVGA  296 (758)
Q Consensus       230 ~~~f~~~~~------~~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a~  296 (758)
                      ..+|+....      .+...|...+.-+.    .+|+.+.+..+|++.+..  ++..  +..+-..|.   ...+...+.
T Consensus        68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~--~~~lw~~Y~~fE~~~~~~~~~  143 (493)
T 2uy1_A           68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGS--LSELWKDFENFELELNKITGK  143 (493)
T ss_dssp             HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTT--HHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhh--HHHHHHHHHHHHHHhccccHH
Confidence            555554331      24456776665443    235566777777777762  1111  111111111   111111121


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC----CCeeechhHHHHHhhhchhhhchhhcCCChhHH
Q 004369          297 QVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH----VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEA  372 (758)
Q Consensus       297 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A  372 (758)
                      .+...                   +.  +.+..|+.+++.+..    .+...|...+.--..    .+......+..+.+
T Consensus       144 ~~~~~-------------------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~----~~~~~~~~~~~~Rv  198 (493)
T 2uy1_A          144 KIVGD-------------------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME----NGMKLGGRPHESRM  198 (493)
T ss_dssp             HHHHH-------------------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT----CTTCCCHHHHHHHH
T ss_pred             HHHHH-------------------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc----CCccCcchhhHHHH
Confidence            11111                   11  122333333332221    122234333222111    00000000013456


Q ss_pred             HHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHH-HHHHHhcC-
Q 004369          373 LSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERA-SRVFVEMS-  450 (758)
Q Consensus       373 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A-~~~~~~~~-  450 (758)
                      ..+|+++.... +.+...+...+.-+.+.|+++.|..+++..+..  +.+...+..    |+...+.++. ..+.+... 
T Consensus       199 ~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~  271 (493)
T 2uy1_A          199 HFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSM  271 (493)
T ss_dssp             HHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC-
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHh
Confidence            77888877642 344666666677777888999999999998887  444433332    2222111111 11111110 


Q ss_pred             -C-------C---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cccHHHHHHHHHHhhhh
Q 004369          451 -T-------R---TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN-AGMVYEALGYFEMMQKE  518 (758)
Q Consensus       451 -~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~  518 (758)
                       .       +   ....|...+....+.+..+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.
T Consensus       272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~  349 (493)
T 2uy1_A          272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK  349 (493)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence             0       0   1134555555555556666676776666 21 11222233221111111 22466666666666654


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 004369          519 YKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLL  584 (758)
Q Consensus       519 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  584 (758)
                      ++-.  ...+...++...+.|+.+.|..+|+++.  .....|...+.--..+|+.+.+..++++..
T Consensus       350 ~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          350 HPDS--TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             CTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3322  2344555666666666666666666652  134556666655555666666655555554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.64  E-value=1.1e-06  Score=88.43  Aligned_cols=164  Identities=5%  Similarity=-0.041  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccccHHHHHHHHHHhhhhcC--CCCC--HH
Q 004369          456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ-----VTFVGALAACSNAGMVYEALGYFEMMQKEYK--IKPV--MD  526 (758)
Q Consensus       456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~~  526 (758)
                      .+...+..+...|++++|++.+++..+.....+.     ..+..+...+...|++++|...++...+...  ..+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            4455667778888999999988888774322111     2233445566778899999999988765211  1122  45


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc----CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC------Cc
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKM----DFEPN-----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK------DC  591 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~  591 (758)
                      .|+.+...|...|++++|++.++++    ...|+     ..++..+...|...|++++|...+++++++.++      -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            7888999999999999999998876    12222     257889999999999999999999999876432      15


Q ss_pred             hhHHHHHHHhhhCCCchhH-HHHHHHhhh
Q 004369          592 ESYAMLLDIFVSAGRWEDV-AVVKNLTRE  619 (758)
Q Consensus       592 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~  619 (758)
                      .+|..++.+|.+.|++++| ...++...+
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            6788999999999999999 776776543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.64  E-value=4.3e-07  Score=86.49  Aligned_cols=120  Identities=13%  Similarity=0.055  Sum_probs=76.8

Q ss_pred             HHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC
Q 004369          495 ALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGN  572 (758)
Q Consensus       495 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~  572 (758)
                      +...+...|++++|...|+.+.     .|+...|..+...|.+.|++++|++.+++. ...| +...|..+...+...|+
T Consensus        12 ~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A           12 EGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence            3344555666666666665442     345556666666666666666666666665 3333 45566666666777777


Q ss_pred             hhHHHHHHHHHhccCCCCc----------------hhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          573 MELGFYAAEQLLKLKPKDC----------------ESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       573 ~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +++|...++++++..|++.                ..+..++.+|...|++++|.+.++...+
T Consensus        87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            7777777777777666655                6677777777777777777777777665

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.63  E-value=5.7e-07  Score=86.66  Aligned_cols=184  Identities=9%  Similarity=-0.058  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC--ChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-Ch---hHHHH
Q 004369          388 LYTFSSILTICSRLVALEQGEQIHALTLKTGFL--SDVVVGTALVNMYKKCGRIERASRVFVEMST--R-TL---ISWTS  459 (758)
Q Consensus       388 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~~~  459 (758)
                      ...+......+...|++++|...+..+++....  .....+..+...|.+.|++++|...|++..+  | +.   ..|..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            344555667788899999999999999886422  1246778889999999999999999999762  2 22   24555


Q ss_pred             HHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhhhhcC
Q 004369          460 MITGFAN------------------HSLSHQALQLFEDMLLAGVRPNQV-TFVGALAACSNAGMVYEALGYFEMMQKEYK  520 (758)
Q Consensus       460 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~  520 (758)
                      +..++..                  .|+.++|+..|+++.+.  .|+.. ......    +.+      .+...+.    
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l~------~~~~~~~----  147 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RLV------FLKDRLA----  147 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HHH------HHHHHHH----
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HHH------HHHHHHH----
Confidence            5555554                  57899999999999984  56532 221111    111      0111111    


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369          521 IKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE  592 (758)
Q Consensus       521 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  592 (758)
                           .....+...|.+.|++++|+..|+++ ...|+    ...+..+..++.+.|+.++|...++++....|++..
T Consensus       148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence                 12235678899999999999999988 44443    246888999999999999999999999999888654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.63  E-value=3.7e-06  Score=84.60  Aligned_cols=160  Identities=5%  Similarity=-0.041  Sum_probs=118.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HHHHHH
Q 004369          460 MITGFANHSLSHQALQLFEDMLLAG-VRPNQV----TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MDHYMC  530 (758)
Q Consensus       460 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~  530 (758)
                      .+..+...|++++|..++++..+.. ..|+..    .+..+...+...|++++|...|+.+.+...-.++    ...++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            4567788889999999998887642 122221    2334566677778999999999888763222223    346888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHc-----CC--C-CC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC------chhHH
Q 004369          531 LIDMFVRLGCIEEAFDFIKKM-----DF--E-PN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD------CESYA  595 (758)
Q Consensus       531 li~~~~~~g~~~~A~~~~~~m-----~~--~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~  595 (758)
                      +...|...|++++|++.++++     ..  . |. ..++..+...|...|++++|...+++++++.+..      +..|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999888876     11  1 21 3368889999999999999999999998865332      56889


Q ss_pred             HHHHHhhhCCC-chhHHHHHHHhhh
Q 004369          596 MLLDIFVSAGR-WEDVAVVKNLTRE  619 (758)
Q Consensus       596 ~l~~~~~~~g~-~~~a~~~~~~m~~  619 (758)
                      .++.+|.+.|+ +++|.+.++...+
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            99999999995 5999988887654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.62  E-value=4.7e-07  Score=83.38  Aligned_cols=155  Identities=12%  Similarity=-0.002  Sum_probs=117.9

Q ss_pred             HhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hhc
Q 004369          426 GTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAA-CSN  501 (758)
Q Consensus       426 ~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~  501 (758)
                      ...+...+.+.|++++|...|++..   +.+...|..+...+...|++++|+..|++....  .|+...+...... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence            3455667888999999999999987   346678999999999999999999999988764  3443322221111 122


Q ss_pred             cccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHHcCChhHH
Q 004369          502 AGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN---EVIWSVFIAGCRRHGNMELG  576 (758)
Q Consensus       502 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a  576 (758)
                      .+...+|...++...+.   .| +...+..+...|...|++++|...++++ ...|+   ...|..+...+...|+.++|
T Consensus        87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            22333467888887753   34 4788889999999999999999999988 66664   55899999999999999999


Q ss_pred             HHHHHHHhc
Q 004369          577 FYAAEQLLK  585 (758)
Q Consensus       577 ~~~~~~~~~  585 (758)
                      ...+++.+.
T Consensus       164 ~~~y~~al~  172 (176)
T 2r5s_A          164 ASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.60  E-value=2.7e-07  Score=79.53  Aligned_cols=95  Identities=8%  Similarity=0.027  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369          525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV  602 (758)
Q Consensus       525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  602 (758)
                      ...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            456677788888999999999998887 4455 67788899999999999999999999999999999999999999999


Q ss_pred             hCCCchhHHHHHHHhhh
Q 004369          603 SAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       603 ~~g~~~~a~~~~~~m~~  619 (758)
                      ..|++++|...++...+
T Consensus        84 ~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           84 AVKEYASALETLDAART  100 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHH
Confidence            99999999999988876

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.57  E-value=2.6e-06  Score=81.00  Aligned_cols=142  Identities=7%  Similarity=-0.072  Sum_probs=79.4

Q ss_pred             hHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHH
Q 004369          427 TALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVY  506 (758)
Q Consensus       427 ~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  506 (758)
                      ..+...|.+.|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~   88 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD   88 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence            3444555566666666666666655555666666666666666666666666655532 122344555555555555555


Q ss_pred             HHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369          507 EALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQL  583 (758)
Q Consensus       507 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~  583 (758)
                      +|...|+.+.+...-.+...                     +...  ...| ....|..+...+...|++++|...++++
T Consensus        89 ~A~~~~~~al~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           89 LAIKDLKEALIQLRGNQLID---------------------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             HHHHHHHHHHHTTTTCSEEE---------------------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCccHHH---------------------HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            55555555544211100000                     0000  1222 2356777777788888888888888888


Q ss_pred             hccCCCC
Q 004369          584 LKLKPKD  590 (758)
Q Consensus       584 ~~~~p~~  590 (758)
                      +++.|++
T Consensus       148 l~~~p~~  154 (213)
T 1hh8_A          148 TSMKSEP  154 (213)
T ss_dssp             HTTCCSG
T ss_pred             HHcCccc
Confidence            8888765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.55  E-value=2.4e-06  Score=81.04  Aligned_cols=135  Identities=11%  Similarity=-0.026  Sum_probs=99.3

Q ss_pred             HhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 004369          426 GTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSN  501 (758)
Q Consensus       426 ~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~  501 (758)
                      .+.+...|.+.|++++|...|++..   +.+...|..+...|...|++++|+..|++..+.  .|+ ..++..+..++..
T Consensus        57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL  134 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence            3448889999999999999999866   457789999999999999999999999999984  565 5677777777765


Q ss_pred             ccc--HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 004369          502 AGM--VYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIA  565 (758)
Q Consensus       502 ~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~  565 (758)
                      .|.  .+.+...++...   ...|....+..+...+...|++++|...|++. ...|+......|..
T Consensus       135 ~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~  198 (208)
T 3urz_A          135 TAEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK  198 (208)
T ss_dssp             HHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            554  344555555442   22333334445566777889999999999998 88898765555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.55  E-value=4.2e-07  Score=83.75  Aligned_cols=120  Identities=5%  Similarity=0.017  Sum_probs=93.7

Q ss_pred             HhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHH-HHHcCCh--
Q 004369          499 CSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAG-CRRHGNM--  573 (758)
Q Consensus       499 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--  573 (758)
                      +...|++++|...++...+.  .+.+...|..+...|...|++++|.+.+++. ...| +...|..+... +...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence            34567788888888877663  2335677888888888889999998888887 4444 56678888888 7788888  


Q ss_pred             hHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          574 ELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       574 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      ++|...++++++.+|+++..+..++.+|...|++++|...++.+.+.
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999888764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.55  E-value=9.3e-07  Score=88.71  Aligned_cols=160  Identities=9%  Similarity=-0.076  Sum_probs=97.7

Q ss_pred             hHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHH
Q 004369          422 DVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVG-ALA  497 (758)
Q Consensus       422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~  497 (758)
                      +......+...+.+.|++++|...|++..   ..+...+..+...+.+.|++++|+..+++....  .|+...... ...
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~  193 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI  193 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence            34444455555666666666666666544   234456666666666666777776666666543  344332222 222


Q ss_pred             HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCh
Q 004369          498 ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN---EVIWSVFIAGCRRHGNM  573 (758)
Q Consensus       498 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~  573 (758)
                      .+...+..++|...+++..+.  -+.+...+..+...|...|++++|++.++++ ...|+   ...+..|+..+...|+.
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            345556666667777666552  2234566777777777777777777777776 33443   55677777777777877


Q ss_pred             hHHHHHHHHHhc
Q 004369          574 ELGFYAAEQLLK  585 (758)
Q Consensus       574 ~~a~~~~~~~~~  585 (758)
                      ++|...+++.+.
T Consensus       272 ~~a~~~~r~al~  283 (287)
T 3qou_A          272 DALASXYRRQLY  283 (287)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            777777776653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.55  E-value=6.9e-07  Score=77.00  Aligned_cols=118  Identities=8%  Similarity=-0.042  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHH
Q 004369          489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAG  566 (758)
Q Consensus       489 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~  566 (758)
                      ...+..+...+...|++++|...++.+.+.  .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence            345555666666777777777777776653  2234667777788888888888888888776 3344 56778888889


Q ss_pred             HHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCch
Q 004369          567 CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWE  608 (758)
Q Consensus       567 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  608 (758)
                      +...|++++|...++++++..|+++..+..++.++...|+++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999889999999998888753

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.54  E-value=7.1e-07  Score=80.88  Aligned_cols=127  Identities=13%  Similarity=0.082  Sum_probs=95.2

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHH
Q 004369          491 TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCR  568 (758)
Q Consensus       491 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~  568 (758)
                      .+..+...+...|++++|...|+...+.  .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            3455555666677777777777776652  2234667777788888888888888888776 4444 5677888888999


Q ss_pred             HcCChhHHHHHHHHHhccCCCCchhHHHHHHH--hhhCCCchhHHHHHHHhhh
Q 004369          569 RHGNMELGFYAAEQLLKLKPKDCESYAMLLDI--FVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       569 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~  619 (758)
                      ..|++++|...+++++++.|++...+..+..+  +...|++++|.+.++...+
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            99999999999999999999988877554444  7888999999988876643

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.54  E-value=1.2e-06  Score=74.74  Aligned_cols=115  Identities=17%  Similarity=0.270  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHH
Q 004369          489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAG  566 (758)
Q Consensus       489 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~  566 (758)
                      ...+..+...+...|++++|.++++.+.+.  .+.+...+..+...+.+.|++++|...++++ ...| +..+|..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            345556666667777777777777776653  2234566777788888888888888888777 3334 56778888888


Q ss_pred             HHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC
Q 004369          567 CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG  605 (758)
Q Consensus       567 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  605 (758)
                      +...|++++|...++++++..|+++..+..++.++...|
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            999999999999999999999998888888888876544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.50  E-value=5.3e-06  Score=78.86  Aligned_cols=173  Identities=13%  Similarity=-0.037  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 004369          407 GEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST-RTLISWTSMITGFANHS----LSHQALQLFEDML  481 (758)
Q Consensus       407 a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~  481 (758)
                      |.+.+....+.|   +...+..|..+|...+++++|.+.|++..+ .+...+..|...|.. +    +.++|++.|++..
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            334444444443   555666677777777788888887777653 355667777777766 5    7888888888887


Q ss_pred             HcCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHhhhhcCCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 004369          482 LAGVRPNQVTFVGALAACSN----AGMVYEALGYFEMMQKEYKIKPV---MDHYMCLIDMFVR----LGCIEEAFDFIKK  550 (758)
Q Consensus       482 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~  550 (758)
                      +.|   +...+..+...+..    .+++++|.++|+...+.   .|.   ...+..|..+|..    .+++++|++.|++
T Consensus        81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            754   45566666666766    77899999999888652   332   6778888888888    7889999999988


Q ss_pred             c-CCCCCHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHhccCCC
Q 004369          551 M-DFEPNEVIWSVFIAGCRRH-G-----NMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       551 m-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p~  589 (758)
                      . ...++...+..|...|..- |     +.++|...++++.+.+..
T Consensus       155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            8 3334566777777777653 3     889999999999887643

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.50  E-value=7e-07  Score=77.39  Aligned_cols=116  Identities=11%  Similarity=0.020  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHH
Q 004369          489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAG  566 (758)
Q Consensus       489 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~  566 (758)
                      ...+..+...+...|++++|...|+.+.+.  .+.+...+..+...|...|++++|++.+++. ...| +...|..+...
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            334455555555556666666666555431  1223455666666666666666666666665 3334 56677778888


Q ss_pred             HHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369          567 CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGR  606 (758)
Q Consensus       567 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  606 (758)
                      +...|++++|...++++++.+|.+...+..++.++...|+
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            8888888888888888888888888888888888876653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.50  E-value=2.4e-07  Score=92.73  Aligned_cols=191  Identities=10%  Similarity=-0.073  Sum_probs=128.1

Q ss_pred             hHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 004369          422 DVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALA  497 (758)
Q Consensus       422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~  497 (758)
                      +...+..+...|.+.|++++|...|++..   ..+...|..+...|...|++++|+..+++..+.  .|+ ...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            34556667777888888888888887754   346677888888888888888888888888763  454 567777777


Q ss_pred             HHhccccHHHHHHHHHHhhhhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 004369          498 ACSNAGMVYEALGYFEMMQKEYKIKPVM-DHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELG  576 (758)
Q Consensus       498 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a  576 (758)
                      ++...|++++|...|+.+.+.   .|+. ..+...+....+.++..+... .......++..+...+. .+ ..|+.++|
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~-~l-~~~~~~~A  154 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLT-RL-IAAERERE  154 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHH-HH-HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HH-HHHHHHHH
Confidence            888888888888888877652   1211 011111222221111111111 22223333444444443 33 36889999


Q ss_pred             HHHHHHHhccCCCCchhHHHHHHHhhhC-CCchhHHHHHHHhhhC
Q 004369          577 FYAAEQLLKLKPKDCESYAMLLDIFVSA-GRWEDVAVVKNLTREE  620 (758)
Q Consensus       577 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~  620 (758)
                      .+.++++++++|++......+...+.+. +++++|.+++..+.+.
T Consensus       155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999888888888888777 7899999999988764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.50  E-value=4.8e-05  Score=82.27  Aligned_cols=346  Identities=13%  Similarity=0.036  Sum_probs=167.7

Q ss_pred             CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCC-hHHHHHHHccCC------CCCcchHHHHHHHHH----hCCCc
Q 004369           88 KSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGN-MEEAQKVFDNLP------RINVVSWTSLISGYV----QNSQP  156 (758)
Q Consensus        88 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~~~------~~~~~~~~~li~~~~----~~g~~  156 (758)
                      ++.+.+..+|++.+..  .|++.+|...+..-.+.+. .+..+.+|+...      ..+...|...+.-+.    .+++.
T Consensus        28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~  105 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI  105 (493)
T ss_dssp             TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred             CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence            6777788888777763  4577777777766655542 233444554322      123445666655432    23455


Q ss_pred             hHHHHHHHHHHHcCCCCChhhHHHHHHHhcc---cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHH
Q 004369          157 ELAIHVFLDMLEAGNYPTNVTLGTALTACSS---LESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAF  233 (758)
Q Consensus       157 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f  233 (758)
                      +.+..+|++....   |.. .+..+-..|..   ......+..+                   +.-+  .+.+..|+.++
T Consensus       106 ~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~~~~~~~~-------------------~~~~--~~~y~~ar~~y  160 (493)
T 2uy1_A          106 EKIRNGYMRALQT---PMG-SLSELWKDFENFELELNKITGKKI-------------------VGDT--LPIFQSSFQRY  160 (493)
T ss_dssp             HHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHCHHHHHHH-------------------HHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhccccHHHH-------------------HHHH--hHHHHHHHHHH
Confidence            6666677666652   211 11111111111   0011111111                   1111  01222333333


Q ss_pred             hccCC----CCcchHHHHHHHHhhCC--C-----hhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHH
Q 004369          234 NRIRE----KNVMSWTTVIGACGENG--E-----AVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLG  302 (758)
Q Consensus       234 ~~~~~----~~~~~~~~li~~~~~~g--~-----~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  302 (758)
                      +.+..    .+...|...+.---.++  -     .+.+..+|++++... +.+...|...+.-+...|+.+.|..+++..
T Consensus       161 ~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erA  239 (493)
T 2uy1_A          161 QQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERG  239 (493)
T ss_dssp             HHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            22221    13335655554322221  1     234566777776642 334555666666666778888888888888


Q ss_pred             HHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHccCC--C----------CCeeechhHHHHHhhhchhhhchhhcCCCh
Q 004369          303 IKLGYASNLRVRNSIMYLYLKCGLVDEA-QKLFDGMS--H----------VNLVTWNAMIAGHAQMMDLAKDDLSAHNGG  369 (758)
Q Consensus       303 ~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~--~----------~~~~~~~~li~~~~~~~~~~~~~l~~~g~~  369 (758)
                      +..  +.+...+..    |+...+.++. ..+.+...  .          .....|-..+.-..+           .+..
T Consensus       240 i~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r-----------~~~~  302 (493)
T 2uy1_A          240 IEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK-----------KRGL  302 (493)
T ss_dssp             HHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH-----------HHCH
T ss_pred             HhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH-----------cCCH
Confidence            877  444433332    2222111111 11111100  0          001223333333333           5567


Q ss_pred             hHHHHHHHHhHhCCCCCCHHHHHHHHHHHhc-ccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHh
Q 004369          370 TEALSIFSKLNSSGMKPDLYTFSSILTICSR-LVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVE  448 (758)
Q Consensus       370 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~  448 (758)
                      +.|..+|.+. .. ...+...|......-.. .++.+.|+.+++...+.- +.+...+...++...+.|+.+.|..+|++
T Consensus       303 ~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er  379 (493)
T 2uy1_A          303 ELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKR  379 (493)
T ss_dssp             HHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7777777777 21 11233333221111111 225777777777776642 22344455566666777777777777777


Q ss_pred             cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004369          449 MSTRTLISWTSMITGFANHSLSHQALQLFEDMLL  482 (758)
Q Consensus       449 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  482 (758)
                      +. +....|...+.--...|+.+.+..+++++..
T Consensus       380 ~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          380 LE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             SC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            63 3455666666655666777666666666653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.49  E-value=1.4e-05  Score=80.29  Aligned_cols=202  Identities=10%  Similarity=-0.038  Sum_probs=139.2

Q ss_pred             HHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHH---HHhHHhhhHHhcCCHHHHHHHHHhcCCC
Q 004369          376 FSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVV---VGTALVNMYKKCGRIERASRVFVEMSTR  452 (758)
Q Consensus       376 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~---~~~~Li~~y~~~g~~~~A~~~~~~~~~~  452 (758)
                      +.++......|+..++..+...+.-.-+         .+.......+..   .+...+..+...|++++|...+++....
T Consensus        34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~  104 (293)
T 3u3w_A           34 VSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK  104 (293)
T ss_dssp             HHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence            3344333356777777666665543211         111111112222   2333467788999999999999886532


Q ss_pred             ---Ch------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccccHHHHHHHHHHhhhh
Q 004369          453 ---TL------ISWTSMITGFANHSLSHQALQLFEDMLLAGVR-PN----QVTFVGALAACSNAGMVYEALGYFEMMQKE  518 (758)
Q Consensus       453 ---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  518 (758)
                         +.      ..+..+...+...|++++|+..|++..+.... ++    ..+++.+..+|...|++++|..+|+.+.+.
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  184 (293)
T 3u3w_A          105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ  184 (293)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence               11      13334666677788999999999999984322 22    236888999999999999999999998742


Q ss_pred             c----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHHcCC-hhHHHHHHHHHh
Q 004369          519 Y----KIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-------DFEPN-EVIWSVFIAGCRRHGN-MELGFYAAEQLL  584 (758)
Q Consensus       519 ~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~-~~~a~~~~~~~~  584 (758)
                      .    +..+. ...|..+...|.+.|++++|++.+++.       +..+. ..+|..+...+...|+ +++|...+++++
T Consensus       185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            1    22222 347889999999999999999999876       22222 5678999999999995 699999999987


Q ss_pred             cc
Q 004369          585 KL  586 (758)
Q Consensus       585 ~~  586 (758)
                      ++
T Consensus       265 ~i  266 (293)
T 3u3w_A          265 FF  266 (293)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.47  E-value=9.9e-07  Score=90.70  Aligned_cols=143  Identities=15%  Similarity=0.020  Sum_probs=107.4

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 004369          453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLI  532 (758)
Q Consensus       453 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li  532 (758)
                      +...|..+...|.+.|++++|+..|++..+.  .|+...+           ..+++.+.- .        -....|..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~-~--------~~~~~~~nla  203 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ-A--------LRLASHLNLA  203 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH-H--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH-H--------HHHHHHHHHH
Confidence            3456777777777778888888888777763  2221100           001111100 0        0136788889


Q ss_pred             HHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhH
Q 004369          533 DMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDV  610 (758)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  610 (758)
                      .+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|++..++..++.++...|++++|
T Consensus       204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988 5556 6788999999999999999999999999999999999999999999999999998


Q ss_pred             -HHHHHHh
Q 004369          611 -AVVKNLT  617 (758)
Q Consensus       611 -~~~~~~m  617 (758)
                       ...++.|
T Consensus       284 ~~~~~~~~  291 (336)
T 1p5q_A          284 EKKLYANM  291 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence             4455555

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.47  E-value=5e-07  Score=80.42  Aligned_cols=105  Identities=11%  Similarity=-0.058  Sum_probs=78.3

Q ss_pred             CCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHH
Q 004369          485 VRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWS  561 (758)
Q Consensus       485 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~  561 (758)
                      +.|+ ...+..+...+.+.|++++|...|+.+.+.  -+.+...|..+..+|.+.|++++|++.|+++ .+.| +...|.
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~  108 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF  108 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence            3454 335566666777788888888888877652  2234677778888888888888888888877 5556 567788


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369          562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  591 (758)
                      .+..++...|++++|...+++++++.|+++
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            888888888888888888888888888753

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.46  E-value=6.3e-07  Score=90.99  Aligned_cols=197  Identities=9%  Similarity=-0.040  Sum_probs=150.2

Q ss_pred             cccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004369          400 RLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFED  479 (758)
Q Consensus       400 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  479 (758)
                      ..|++++|.+++....+..-. .         .+...+++++|...|.+           ....|...|++++|+..|.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~   61 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ   61 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence            357788888888877764211 1         12225889999988765           45678899999999999998


Q ss_pred             HHHcCC---CC-C-HHHHHHHHHHHhccccHHHHHHHHHHhhhhc---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004369          480 MLLAGV---RP-N-QVTFVGALAACSNAGMVYEALGYFEMMQKEY---KIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKK  550 (758)
Q Consensus       480 m~~~g~---~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~  550 (758)
                      ..+...   .+ . ..+|..+...|...|++++|...|++..+.+   |-.. ...++..+...|.+ |++++|++.+++
T Consensus        62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~  140 (307)
T 2ifu_A           62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ  140 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            876311   11 1 4578888889999999999999999876532   2111 14678889999988 999999999988


Q ss_pred             c-CCCC---C----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc------hhHHHHHHHhhhCCCchhHHHHHHH
Q 004369          551 M-DFEP---N----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC------ESYAMLLDIFVSAGRWEDVAVVKNL  616 (758)
Q Consensus       551 m-~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~  616 (758)
                      . .+.|   +    ..++..+...+...|++++|...+++++++.|++.      ..+..++.+|...|++++|...++.
T Consensus       141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7 2111   1    45788899999999999999999999999866543      3677788889999999999999998


Q ss_pred             hh
Q 004369          617 TR  618 (758)
Q Consensus       617 m~  618 (758)
                      ..
T Consensus       221 al  222 (307)
T 2ifu_A          221 SY  222 (307)
T ss_dssp             HT
T ss_pred             Hh
Confidence            86

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.46  E-value=3.5e-05  Score=77.03  Aligned_cols=229  Identities=10%  Similarity=0.033  Sum_probs=174.8

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHHhccc--chHHHHHHHHHHHHcCCCChHHHHhHHhhhH----Hhc--
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLY-TFSSILTICSRLV--ALEQGEQIHALTLKTGFLSDVVVGTALVNMY----KKC--  436 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y----~~~--  436 (758)
                      ....++|++++.+++..  .|+.. .++.--..+...+  +++++...++.++... +.+..+++.-...+    .+.  
T Consensus        46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~  122 (306)
T 3dra_A           46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN  122 (306)
T ss_dssp             TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence            55667999999999874  56444 4555555666777  9999999999998864 44555665444444    444  


Q ss_pred             -CCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc------
Q 004369          437 -GRIERASRVFVEMS---TRTLISWTSMITGFANHSLSH--QALQLFEDMLLAGVRPNQVTFVGALAACSNAGM------  504 (758)
Q Consensus       437 -g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------  504 (758)
                       ++++++..+++++.   .+|..+|+--.-.+.+.|.++  ++++.++++.+... -|...|..-.....+.+.      
T Consensus       123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~  201 (306)
T 3dra_A          123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT  201 (306)
T ss_dssp             CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence             78999999999877   557788988888888889888  99999999998643 245566655555666666      


Q ss_pred             HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHc-CCC---C-CHHHHHHHHHHHHHcCChhHHHH
Q 004369          505 VYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEE-AFDFIKKM-DFE---P-NEVIWSVFIAGCRRHGNMELGFY  578 (758)
Q Consensus       505 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~~---p-~~~~~~~ll~~~~~~g~~~~a~~  578 (758)
                      +++++++++.+...  .+-|...|+.+...+.+.|+..+ +.++.++. ...   | +...+..+...+.+.|+.++|.+
T Consensus       202 ~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~  279 (306)
T 3dra_A          202 IDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT  279 (306)
T ss_dssp             HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence            89999999998863  34567888889999999998555 55677766 222   3 67889999999999999999999


Q ss_pred             HHHHHhc-cCCCCchhHHHHHHH
Q 004369          579 AAEQLLK-LKPKDCESYAMLLDI  600 (758)
Q Consensus       579 ~~~~~~~-~~p~~~~~~~~l~~~  600 (758)
                      +++.+.+ .+|.....+...++.
T Consensus       280 ~~~~l~~~~Dpir~~yW~~~~~~  302 (306)
T 3dra_A          280 VYDLLKSKYNPIRSNFWDYQISK  302 (306)
T ss_dssp             HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred             HHHHHHhccChHHHHHHHHHHhh
Confidence            9999996 799887777766543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.43  E-value=9.6e-06  Score=81.53  Aligned_cols=163  Identities=9%  Similarity=-0.091  Sum_probs=122.2

Q ss_pred             HHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--H
Q 004369          424 VVGTALVNMYKKCGRIERASRVFVEMST---RTL------ISWTSMITGFANHSLSHQALQLFEDMLLAGVR---PN--Q  489 (758)
Q Consensus       424 ~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~  489 (758)
                      ..+...+..|...|++++|.+.+++..+   ...      ..+..+...+...|++++|+..+++..+....   +.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            3445567788899999999999876432   111      23444566677889999999999998864221   22  3


Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHhhh---hcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHc-CC------CC-C
Q 004369          490 VTFVGALAACSNAGMVYEALGYFEMMQK---EYKIKPV--MDHYMCLIDMFVRLGCIEEAFDFIKKM-DF------EP-N  556 (758)
Q Consensus       490 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~------~p-~  556 (758)
                      .+++.+...|...|++++|..+|+++.+   ..+..+.  ...|..+...|.+.|++++|++.+++. .+      .. -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            4788888999999999999999999873   2222221  258889999999999999999999886 11      11 1


Q ss_pred             HHHHHHHHHHHHHcCChhHH-HHHHHHHhcc
Q 004369          557 EVIWSVFIAGCRRHGNMELG-FYAAEQLLKL  586 (758)
Q Consensus       557 ~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~  586 (758)
                      ..+|..+...+...|++++| ...+++++.+
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            56788999999999999999 7778888753

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.42  E-value=4.7e-07  Score=80.58  Aligned_cols=110  Identities=8%  Similarity=-0.091  Sum_probs=84.9

Q ss_pred             CCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHH
Q 004369          485 VRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWS  561 (758)
Q Consensus       485 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~  561 (758)
                      +.|+ ...+..+...+...|++++|...|+.+.+.  -+.+...|..+..+|.+.|++++|++.|++. ...| +...|.
T Consensus        16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   93 (148)
T 2vgx_A           16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF   93 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            3444 345566666778888888888888887653  2335677788888888899999999888887 4555 567788


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369          562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM  596 (758)
Q Consensus       562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  596 (758)
                      .+..++...|++++|...+++++++.|+++.....
T Consensus        94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  128 (148)
T 2vgx_A           94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXEL  128 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence            89999999999999999999999999987765443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.40  E-value=3.5e-06  Score=76.39  Aligned_cols=95  Identities=16%  Similarity=0.082  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369          525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV  602 (758)
Q Consensus       525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  602 (758)
                      ...+..+...+.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            455666667777777777777777766 4444 56667777777777777777777777777777777777777777777


Q ss_pred             hCCCchhHHHHHHHhhh
Q 004369          603 SAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       603 ~~g~~~~a~~~~~~m~~  619 (758)
                      ..|++++|.+.++...+
T Consensus        91 ~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHH
Confidence            77777777777777665

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.39  E-value=7.8e-07  Score=75.98  Aligned_cols=94  Identities=17%  Similarity=0.053  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhC
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSA  604 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  604 (758)
                      .+..+...+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..|+.+|...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3455677888999999999999988 5566 6788999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHhhhC
Q 004369          605 GRWEDVAVVKNLTREE  620 (758)
Q Consensus       605 g~~~~a~~~~~~m~~~  620 (758)
                      |++++|...++...+.
T Consensus        99 g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           99 HNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999988763

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.39  E-value=3.3e-06  Score=71.11  Aligned_cols=93  Identities=16%  Similarity=0.229  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhC
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSA  604 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  604 (758)
                      .+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~   85 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   85 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            3444455555555555555555554 2223 3444555555555555555555555555555555555555555555555


Q ss_pred             CCchhHHHHHHHhhh
Q 004369          605 GRWEDVAVVKNLTRE  619 (758)
Q Consensus       605 g~~~~a~~~~~~m~~  619 (758)
                      |++++|.+.++...+
T Consensus        86 ~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           86 NRFEEAKRTYEEGLK  100 (118)
T ss_dssp             TCHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHH
Confidence            555555555555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.38  E-value=7.8e-07  Score=96.15  Aligned_cols=117  Identities=13%  Similarity=0.082  Sum_probs=96.0

Q ss_pred             HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhH
Q 004369          498 ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMEL  575 (758)
Q Consensus       498 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~  575 (758)
                      .+.+.|++++|.+.|+++.+.  -+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            456778888888888888763  2234778888999999999999999999888 5566 57789999999999999999


Q ss_pred             HHHHHHHHhccCCCCchhHHHHHHH--hhhCCCchhHHHHHHH
Q 004369          576 GFYAAEQLLKLKPKDCESYAMLLDI--FVSAGRWEDVAVVKNL  616 (758)
Q Consensus       576 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~  616 (758)
                      |+..++++++++|+++..+..++.+  +.+.|++++|.+.++.
T Consensus        93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1           93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999888  8889999999998774

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.36  E-value=2.6e-06  Score=74.33  Aligned_cols=98  Identities=9%  Similarity=-0.005  Sum_probs=84.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 004369          523 PVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDI  600 (758)
Q Consensus       523 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  600 (758)
                      .+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            45677888888888999999999988887 4445 577888899999999999999999999999999999999999999


Q ss_pred             hhhCCCchhHHHHHHHhhhC
Q 004369          601 FVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       601 ~~~~g~~~~a~~~~~~m~~~  620 (758)
                      |...|++++|...++...+.
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999888763

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.36  E-value=3.9e-06  Score=72.53  Aligned_cols=97  Identities=11%  Similarity=0.091  Sum_probs=89.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 004369          523 PVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDI  600 (758)
Q Consensus       523 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  600 (758)
                      .+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            44678888999999999999999999998 6666 678899999999999999999999999999999999999999999


Q ss_pred             hhhCCCchhHHHHHHHhhh
Q 004369          601 FVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       601 ~~~~g~~~~a~~~~~~m~~  619 (758)
                      |...|++++|.+.++...+
T Consensus        94 ~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            9999999999999998876

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.35  E-value=5.4e-06  Score=69.70  Aligned_cols=110  Identities=15%  Similarity=0.021  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHH
Q 004369          490 VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGC  567 (758)
Q Consensus       490 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~  567 (758)
                      ..+..+...+...|++++|...|+...+.  .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34455555666677777777777766552  2234566777777777888888888877776 3344 567788888888


Q ss_pred             HHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh
Q 004369          568 RRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF  601 (758)
Q Consensus       568 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  601 (758)
                      ...|++++|...++++++.+|+++..+..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            8889999999999999998888887777776654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.35  E-value=1.8e-06  Score=72.03  Aligned_cols=97  Identities=12%  Similarity=0.160  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC--CchhHHHHHHH
Q 004369          525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK--DCESYAMLLDI  600 (758)
Q Consensus       525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~  600 (758)
                      ...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+  +...+..++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            445666777788888888888888876 3344 5677888888888899999999999999999988  88889999999


Q ss_pred             hhhC-CCchhHHHHHHHhhhCC
Q 004369          601 FVSA-GRWEDVAVVKNLTREEK  621 (758)
Q Consensus       601 ~~~~-g~~~~a~~~~~~m~~~~  621 (758)
                      |... |++++|.+.++...+..
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHhCCHHHHHHHHHHHhhcc
Confidence            9999 99999999888887644

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.34  E-value=1.4e-06  Score=75.05  Aligned_cols=94  Identities=10%  Similarity=-0.036  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch-------hHHH
Q 004369          526 DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE-------SYAM  596 (758)
Q Consensus       526 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~  596 (758)
                      ..+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|++..       +|..
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            45677888999999999999999987 6666 5778999999999999999999999999999887643       6778


Q ss_pred             HHHHhhhCCCchhHHHHHHHhhh
Q 004369          597 LLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       597 l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ++.+|...|++++|.+.++...+
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            88999999999999999988765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.34  E-value=4.5e-06  Score=78.46  Aligned_cols=152  Identities=10%  Similarity=-0.033  Sum_probs=80.6

Q ss_pred             hcCCHHHHHH---HHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccccHH
Q 004369          435 KCGRIERASR---VFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLA----GVRPN-QVTFVGALAACSNAGMVY  506 (758)
Q Consensus       435 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~  506 (758)
                      ..|++++|.+   .+..-+......+..+...+...|++++|+..+++..+.    +..|. ..++..+...+...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            3566666666   444333334456666666777777777777777666541    11111 334555555666666777


Q ss_pred             HHHHHHHHhhhh---cCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCCC----HHHHHHHHHHHHHcCCh
Q 004369          507 EALGYFEMMQKE---YKIKP--VMDHYMCLIDMFVRLGCIEEAFDFIKKM----DFEPN----EVIWSVFIAGCRRHGNM  573 (758)
Q Consensus       507 ~a~~~~~~~~~~---~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~  573 (758)
                      +|...+++..+.   .+..|  ....+..+...+...|++++|.+.+++.    ...++    ..++..+...+...|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            766666665442   11111  1234555666666666666666666554    00111    12245555556666666


Q ss_pred             hHHHHHHHHHhcc
Q 004369          574 ELGFYAAEQLLKL  586 (758)
Q Consensus       574 ~~a~~~~~~~~~~  586 (758)
                      ++|...+++++++
T Consensus       164 ~~A~~~~~~al~~  176 (203)
T 3gw4_A          164 LEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666555543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.33  E-value=1.5e-05  Score=77.89  Aligned_cols=180  Identities=9%  Similarity=-0.039  Sum_probs=122.6

Q ss_pred             hcCCHHHHHHHHHhcC---CCChhHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------------
Q 004369          435 KCGRIERASRVFVEMS---TRTLISWTSM-------ITGFANHSLSHQALQLFEDMLLAGVRPNQ---------------  489 (758)
Q Consensus       435 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------------  489 (758)
                      ..++.+.|.+.|.+..   ......|+.+       ...+...++..+++..+++-..  +.|+.               
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence            4678888888888766   2344677777       4555555555555555554443  33321               


Q ss_pred             -------HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCH----H
Q 004369          490 -------VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNE----V  558 (758)
Q Consensus       490 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~  558 (758)
                             .....+...+...|++++|.+.|+.+..   ..|+......+...+.+.|++++|+..|++....|+.    .
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~  172 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA  172 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence                   1223344567778888888888887754   2354335556667888888888888888877333332    3


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhccC--CC-CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          559 IWSVFIAGCRRHGNMELGFYAAEQLLKLK--PK-DCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       559 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ++..|..++...|++++|+..++++....  |. .+.....++.++.+.|+.++|...++.+..
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            67778888888888888888888887543  44 445777888888888888888888888876

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.33  E-value=2.5e-06  Score=78.43  Aligned_cols=127  Identities=10%  Similarity=0.058  Sum_probs=93.6

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH-HHHcCCH--
Q 004369          465 ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDM-FVRLGCI--  541 (758)
Q Consensus       465 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--  541 (758)
                      ...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+.+.+..  +.+...+..+..+ |...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence            34567777888887777642 2345677777778888888888888888877632  2345677777777 7788888  


Q ss_pred             HHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369          542 EEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESY  594 (758)
Q Consensus       542 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  594 (758)
                      ++|...++++ ...| +...|..+...+...|++++|...++++++..|+++...
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            8999888887 4455 567788888999999999999999999999999876544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.32  E-value=2.6e-06  Score=77.01  Aligned_cols=93  Identities=10%  Similarity=0.006  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc-CC------------------CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhcc
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKM-DF------------------EP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKL  586 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m-~~------------------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  586 (758)
                      .+......+.+.|++++|++.|++. ..                  .| +...|..+..++.+.|++++|+..+++++++
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~   92 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR   92 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            3444445555555555555555544 11                  22 2456888888888899999999999999999


Q ss_pred             CCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          587 KPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       587 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +|+++..|..++.+|...|++++|...++...+
T Consensus        93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            999989999999999999999999988888775

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.32  E-value=4.9e-06  Score=81.22  Aligned_cols=139  Identities=14%  Similarity=-0.015  Sum_probs=104.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC--HHHHHHHHHH
Q 004369          457 WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV--MDHYMCLIDM  534 (758)
Q Consensus       457 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~  534 (758)
                      +-.+...+...|++++|.++|+.+...  .|+......+...+.+.+++++|+..|+...+. . .|.  ...+..+..+
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence            344566777888888888888887663  465545555555788899999999999865431 1 221  3467778899


Q ss_pred             HHHcCCHHHHHHHHHHc--C-CCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 004369          535 FVRLGCIEEAFDFIKKM--D-FEPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDI  600 (758)
Q Consensus       535 ~~~~g~~~~A~~~~~~m--~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  600 (758)
                      +.+.|++++|+..|++.  + ..|.  ...+..+..++.+.|+.++|...+++++..+|+ +.+...|.+.
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~  250 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP  250 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence            99999999999999988  2 2253  346778888899999999999999999999998 7777777544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.32  E-value=8.5e-06  Score=69.23  Aligned_cols=95  Identities=17%  Similarity=0.366  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369          525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV  602 (758)
Q Consensus       525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  602 (758)
                      ...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            567888999999999999999999998 3344 67789999999999999999999999999999999999999999999


Q ss_pred             hCCCchhHHHHHHHhhh
Q 004369          603 SAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       603 ~~g~~~~a~~~~~~m~~  619 (758)
                      ..|++++|...++.+.+
T Consensus        89 ~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHH
Confidence            99999999999999876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.31  E-value=4.1e-06  Score=71.96  Aligned_cols=109  Identities=9%  Similarity=-0.083  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHH
Q 004369          491 TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCR  568 (758)
Q Consensus       491 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~  568 (758)
                      .+..+...+.+.|++++|...|+...+.  .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            4455555666777777777777776652  2234567777788888888888888888776 4455 5667888888888


Q ss_pred             HcCChhHHHHHHHHHhccC------CCCchhHHHHHHHh
Q 004369          569 RHGNMELGFYAAEQLLKLK------PKDCESYAMLLDIF  601 (758)
Q Consensus       569 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~  601 (758)
                      ..|++++|...++++++++      |.++.....+..+.
T Consensus        84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            8888889998888888888      77777766665554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.30  E-value=4.8e-06  Score=71.52  Aligned_cols=96  Identities=16%  Similarity=0.176  Sum_probs=87.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh
Q 004369          524 VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF  601 (758)
Q Consensus       524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  601 (758)
                      +...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            4567788899999999999999999988 4445 6788999999999999999999999999999999999999999999


Q ss_pred             hhCCCchhHHHHHHHhhh
Q 004369          602 VSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       602 ~~~g~~~~a~~~~~~m~~  619 (758)
                      ...|++++|.+.++...+
T Consensus        91 ~~~~~~~~A~~~~~~~~~  108 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALE  108 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHh
Confidence            999999999999999876

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.30  E-value=3.6e-06  Score=79.06  Aligned_cols=168  Identities=7%  Similarity=-0.049  Sum_probs=106.2

Q ss_pred             hhhHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHH
Q 004369          430 VNMYKKCGRIERASRVFVEMSTR---TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVY  506 (758)
Q Consensus       430 i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  506 (758)
                      +......|++++|.+.++.....   ....|..+...+...|++++|+..|++..+.  .|+...+...        ...
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~   80 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL   80 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence            33444556666666666543321   3346777777788888888888888887773  2221100000        000


Q ss_pred             HHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 004369          507 EALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLL  584 (758)
Q Consensus       507 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  584 (758)
                      .-.   ..        .....|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...+++++
T Consensus        81 ~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  149 (198)
T 2fbn_A           81 DKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA  149 (198)
T ss_dssp             HHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            000   00        01356777888899999999999999887 4455 67788999999999999999999999999


Q ss_pred             ccCCCCchhHHHHHHHhhhCCCchhHH-HHHHHhh
Q 004369          585 KLKPKDCESYAMLLDIFVSAGRWEDVA-VVKNLTR  618 (758)
Q Consensus       585 ~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~  618 (758)
                      +++|+++..+..++.++...|+.+++. ..++.|-
T Consensus       150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999888877776 4444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.29  E-value=2.6e-06  Score=75.12  Aligned_cols=108  Identities=11%  Similarity=-0.091  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHH
Q 004369          491 TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCR  568 (758)
Q Consensus       491 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~  568 (758)
                      .+..+...+.+.|++++|...|+.+.+.  -+.+...|..+..+|.+.|++++|+..|++. ...| +...|..+..++.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            4445555677778888888888877653  2235667777888888888888888888887 4455 5667888888899


Q ss_pred             HcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 004369          569 RHGNMELGFYAAEQLLKLKPKDCESYAMLLDI  600 (758)
Q Consensus       569 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  600 (758)
                      ..|++++|...+++++++.|+++........+
T Consensus        98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            99999999999999999988887665554333

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.29  E-value=6.4e-06  Score=88.96  Aligned_cols=88  Identities=16%  Similarity=0.095  Sum_probs=46.2

Q ss_pred             HHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccc
Q 004369          428 ALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAG  503 (758)
Q Consensus       428 ~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g  503 (758)
                      .+...|.+.|++++|.+.|++..   ..+...|..+..+|.+.|++++|++.+++..+.  .|+ ...+..+..++.+.|
T Consensus        11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g   88 (477)
T 1wao_1           11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALG   88 (477)
T ss_dssp             SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence            34445555566666666655543   223455555555555555555555555555553  232 344444555555555


Q ss_pred             cHHHHHHHHHHhhh
Q 004369          504 MVYEALGYFEMMQK  517 (758)
Q Consensus       504 ~~~~a~~~~~~~~~  517 (758)
                      ++++|.+.|+++.+
T Consensus        89 ~~~eA~~~~~~al~  102 (477)
T 1wao_1           89 KFRAALRDYETVVK  102 (477)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555555544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=9.5e-06  Score=71.62  Aligned_cols=109  Identities=11%  Similarity=0.007  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHH
Q 004369          489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSV  562 (758)
Q Consensus       489 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~  562 (758)
                      ...+..+...+...|++++|...|+...+   ..|+    ...+..+...|...|++++|++.+++. ...| +...|..
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            33444444455555555555555555533   2233    344444555555555555555555444 2223 3344445


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 004369          563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDI  600 (758)
Q Consensus       563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  600 (758)
                      +...+...|++++|...++++++++|++...+..+..+
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            55555555555555555555555555554444444433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.27  E-value=5.6e-06  Score=74.97  Aligned_cols=109  Identities=9%  Similarity=-0.093  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHH
Q 004369          489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAG  566 (758)
Q Consensus       489 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~  566 (758)
                      ...+..+...+.+.|++++|...|+...+.  .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+...
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            445666666777788888888888777653  1235677888888888899999999888887 5556 57789999999


Q ss_pred             HHHcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 004369          567 CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLD  599 (758)
Q Consensus       567 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  599 (758)
                      +...|++++|...++++++++|+++..+...+-
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  121 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL  121 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            999999999999999999999999886655443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.27  E-value=1.3e-05  Score=75.27  Aligned_cols=154  Identities=10%  Similarity=-0.081  Sum_probs=115.8

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhc---CCCC-CHHHHHHHHHHHHHcCC
Q 004369          465 ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEY---KIKP-VMDHYMCLIDMFVRLGC  540 (758)
Q Consensus       465 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~  540 (758)
                      ...|++++|.++++.+... ......++..+...+...|++++|...+++..+..   +..| ....+..+...|...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            4579999999966555431 22346678888889999999999999999887621   2222 24678889999999999


Q ss_pred             HHHHHHHHHHc-CC---CC-C----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCC--CCc----hhHHHHHHHhhhCC
Q 004369          541 IEEAFDFIKKM-DF---EP-N----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKP--KDC----ESYAMLLDIFVSAG  605 (758)
Q Consensus       541 ~~~A~~~~~~m-~~---~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g  605 (758)
                      +++|.+.+++. ..   .+ +    ..++..+...+...|++++|...+++++++.+  .++    ..+..++.+|...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99999999886 11   22 2    34578888999999999999999999987532  222    24678999999999


Q ss_pred             CchhHHHHHHHhhh
Q 004369          606 RWEDVAVVKNLTRE  619 (758)
Q Consensus       606 ~~~~a~~~~~~m~~  619 (758)
                      ++++|.+.++...+
T Consensus       162 ~~~~A~~~~~~al~  175 (203)
T 3gw4_A          162 NLLEAQQHWLRARD  175 (203)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999888765

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.27  E-value=1.3e-05  Score=70.80  Aligned_cols=95  Identities=9%  Similarity=-0.054  Sum_probs=47.5

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHH
Q 004369          453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN----QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHY  528 (758)
Q Consensus       453 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~  528 (758)
                      +...|..+...+...|++++|+..|++..+  ..|+    ...+..+..++...|++++|...++...+.  .+.+...+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~  102 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL  102 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence            334455555555555555555555555554  2333    334444444555555555555555555432  11234444


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHc
Q 004369          529 MCLIDMFVRLGCIEEAFDFIKKM  551 (758)
Q Consensus       529 ~~li~~~~~~g~~~~A~~~~~~m  551 (758)
                      ..+..+|...|++++|.+.+++.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~a  125 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRC  125 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            55555555555555555555554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.23  E-value=6.7e-05  Score=75.77  Aligned_cols=232  Identities=13%  Similarity=0.081  Sum_probs=159.5

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcC-CHHHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCG-RIERASR  444 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g-~~~~A~~  444 (758)
                      ..++.++...++.+...+.                  .-++|.++.+.++... +.+..+++.--..+...| .++++++
T Consensus        50 ~~~y~~~~~~~r~~~~~~e------------------~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~  110 (349)
T 3q7a_A           50 SEEYKDAMDYFRAIAAKEE------------------KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELR  110 (349)
T ss_dssp             CHHHHHHHHHHHHHHHTTC------------------CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCC------------------CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHH
Confidence            3445556666666555432                  2345666666666654 345566776666666777 5899999


Q ss_pred             HHHhcC---CCChhHHHHHHHHHHhc-C-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHH--------HHHHH
Q 004369          445 VFVEMS---TRTLISWTSMITGFANH-S-LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVY--------EALGY  511 (758)
Q Consensus       445 ~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~  511 (758)
                      +++.+.   .++..+|+.-...+... + ++++++++++++.+.. .-|...|..-...+.+.|.++        +++++
T Consensus       111 ~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~  189 (349)
T 3q7a_A          111 LMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW  189 (349)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence            998876   44667888777777666 6 8899999999998753 224556666555566666555        88899


Q ss_pred             HHHhhhhcCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCh---------
Q 004369          512 FEMMQKEYKIKPVMDHYMCLIDMFVRLGC-------IEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNM---------  573 (758)
Q Consensus       512 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~---------  573 (758)
                      ++.+.+.  -.-+...|+....++.+.++       ++++++.++++ ...| |...|+.+-..+.+.|+.         
T Consensus       190 ~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~  267 (349)
T 3q7a_A          190 CNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAIL  267 (349)
T ss_dssp             HHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHG
T ss_pred             HHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccc
Confidence            9888873  23456778877778877776       78999998887 5566 788898888888777654         


Q ss_pred             -----------hHHHHHHHHHhccC------CCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          574 -----------ELGFYAAEQLLKLK------PKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       574 -----------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                                 .........++...      +..+.+...|+++|...|+.++|.++++.+.+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          268 PYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             GGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence                       22233333333322      45667888999999999999999999999864

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.20  E-value=2.1e-06  Score=80.73  Aligned_cols=117  Identities=13%  Similarity=-0.009  Sum_probs=88.3

Q ss_pred             ccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-C----------------HHHHHH
Q 004369          501 NAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-N----------------EVIWSV  562 (758)
Q Consensus       501 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~----------------~~~~~~  562 (758)
                      ..|.++++.+.++.....  .......+..+...+.+.|++++|++.|++. ...| +                ..+|..
T Consensus        16 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (198)
T 2fbn_A           16 NLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN   93 (198)
T ss_dssp             ------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence            345555555555432221  1112455667788888889999999888877 3333 2                267889


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +..++...|++++|+..++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus        94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A           94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998876

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.19  E-value=2.5e-05  Score=70.39  Aligned_cols=127  Identities=11%  Similarity=0.064  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 004369          456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMF  535 (758)
Q Consensus       456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  535 (758)
                      .|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.  .+.+...+..+...+
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence            45555556666666666666666665531 223455555666666666666666666666552  123355666666667


Q ss_pred             HHcCCHHHHHHHHHHc-CCCC-CHHHHHHH--HHHHHHcCChhHHHHHHHHHhc
Q 004369          536 VRLGCIEEAFDFIKKM-DFEP-NEVIWSVF--IAGCRRHGNMELGFYAAEQLLK  585 (758)
Q Consensus       536 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~  585 (758)
                      .+.|++++|.+.++++ ...| +...+..+  +..+...|++++|...+++..+
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            7777777777766665 3333 33344332  3335556677777776666543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.19  E-value=5.6e-06  Score=72.86  Aligned_cols=92  Identities=9%  Similarity=0.016  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-------------HHHHHHHHHHHHHcCChhHHHHHHHHHhcc-------
Q 004369          528 YMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-------------EVIWSVFIAGCRRHGNMELGFYAAEQLLKL-------  586 (758)
Q Consensus       528 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------  586 (758)
                      +......+.+.|++++|++.|++. .+.|+             ...|..+..++...|++++|+..+++++++       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            344555566667777777766665 22232             237888888889999999999999999888       


Q ss_pred             CCCCchhH----HHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          587 KPKDCESY----AMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       587 ~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +|++...|    ..++.++...|++++|...+++..+
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            99998888    9999999999999999999988866

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.18  E-value=7.2e-06  Score=70.55  Aligned_cols=89  Identities=11%  Similarity=0.030  Sum_probs=60.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC---chhHHHHHHHhh
Q 004369          531 LIDMFVRLGCIEEAFDFIKKM-DFEPNE----VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD---CESYAMLLDIFV  602 (758)
Q Consensus       531 li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~  602 (758)
                      +...+.+.|++++|.+.|++. ...|+.    ..|..+...+...|++++|...++++++..|++   +..+..++.+|.
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence            455566677777777777665 223322    356666677777777777777777777777776   566777777777


Q ss_pred             hCCCchhHHHHHHHhhh
Q 004369          603 SAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       603 ~~g~~~~a~~~~~~m~~  619 (758)
                      ..|++++|...++.+.+
T Consensus        88 ~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            77777777777776665

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.15  E-value=1.3e-05  Score=68.85  Aligned_cols=95  Identities=13%  Similarity=0.112  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC-------chhHH
Q 004369          525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD-------CESYA  595 (758)
Q Consensus       525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~  595 (758)
                      ...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|++       +..+.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            356777888888899999999988887 3344 67778888999999999999999999999988766       77899


Q ss_pred             HHHHHhhhCCCchhHHHHHHHhhh
Q 004369          596 MLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       596 ~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      .++.+|...|++++|.+.++...+
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHH
Confidence            999999999999999999998876

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.15  E-value=8.9e-06  Score=70.84  Aligned_cols=100  Identities=7%  Similarity=-0.055  Sum_probs=70.6

Q ss_pred             CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHH
Q 004369          488 NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIA  565 (758)
Q Consensus       488 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~  565 (758)
                      +...+..+...+...|++++|...|+...+.  .+.+...|..+..+|...|++++|...+++. ...| +...|..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            3555666666667777777777777766552  1233566777777777777777777777776 4444 5667788888


Q ss_pred             HHHHcCChhHHHHHHHHHhccCCC
Q 004369          566 GCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       566 ~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      .+...|++++|...+++++++.|+
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChh
Confidence            888888888888888888887776

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.13  E-value=1.4e-05  Score=85.77  Aligned_cols=161  Identities=11%  Similarity=0.011  Sum_probs=111.3

Q ss_pred             CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 004369          437 GRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFE  513 (758)
Q Consensus       437 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  513 (758)
                      +++++|...|+....   .....|..+...|.+.|++++|+..|++..+.  .|+...+          . -++..+ ..
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~  313 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SE  313 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HH
Confidence            344445444443321   23456777888888888888888888888763  2221100          0 011110 00


Q ss_pred             HhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369          514 MMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       514 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  591 (758)
                      .        -....|..+..+|.+.|++++|+..++++ ...| +...|..+..++...|++++|...++++++++|++.
T Consensus       314 ~--------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~  385 (457)
T 1kt0_A          314 S--------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  385 (457)
T ss_dssp             H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred             H--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            0        11367888899999999999999999988 5556 678899999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhhCCCchhHHH-HHHHhhh
Q 004369          592 ESYAMLLDIFVSAGRWEDVAV-VKNLTRE  619 (758)
Q Consensus       592 ~~~~~l~~~~~~~g~~~~a~~-~~~~m~~  619 (758)
                      .++..++.++...|+++++.+ .++.|-.
T Consensus       386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          386 AARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999988774 4455543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.13  E-value=1.6e-05  Score=81.69  Aligned_cols=126  Identities=11%  Similarity=0.015  Sum_probs=73.6

Q ss_pred             hHHHHhHHhhhHHhcCCHHHHHHHHHhcC--CC-C---------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004369          422 DVVVGTALVNMYKKCGRIERASRVFVEMS--TR-T---------------LISWTSMITGFANHSLSHQALQLFEDMLLA  483 (758)
Q Consensus       422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~--~~-~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  483 (758)
                      +...+..+...|.+.|++++|...|++..  .+ +               ...|..+..+|.+.|++++|+..|++.++.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56788899999999999999999998865  22 2               234444444444445555555444444442


Q ss_pred             CCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHH
Q 004369          484 GVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWS  561 (758)
Q Consensus       484 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~  561 (758)
                        .|                                   .+...|..+..+|...|++++|+..|+++ .+.| +..++.
T Consensus       226 --~p-----------------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~  268 (336)
T 1p5q_A          226 --DS-----------------------------------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT  268 (336)
T ss_dssp             --CT-----------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             --CC-----------------------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence              22                                   23444555555555555555555555555 3334 345555


Q ss_pred             HHHHHHHHcCChhHH-HHHHHHHh
Q 004369          562 VFIAGCRRHGNMELG-FYAAEQLL  584 (758)
Q Consensus       562 ~ll~~~~~~g~~~~a-~~~~~~~~  584 (758)
                      .+...+...|+.++| ...+++++
T Consensus       269 ~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          269 QLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666655 33444443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.12  E-value=0.00025  Score=71.31  Aligned_cols=178  Identities=8%  Similarity=0.061  Sum_probs=121.0

Q ss_pred             HHHHHHHHHhcC---CCChhHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc-HHHHHHHH
Q 004369          439 IERASRVFVEMS---TRTLISWTSMITGFANHS--LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGM-VYEALGYF  512 (758)
Q Consensus       439 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~  512 (758)
                      ++++..+++.+.   .++..+|+.-.-.+...|  .+++++++++++.+.. +-|...|+.-..++.+.|. ++++++++
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            566777776655   456677877777777777  4788888888888753 2245566655556666676 58888888


Q ss_pred             HHhhhhcCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc------
Q 004369          513 EMMQKEYKIKPVMDHYMCLIDMFVRL--------------GCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH------  570 (758)
Q Consensus       513 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~------  570 (758)
                      +.+.+.  -+-|...|+....++.+.              +.++++++.+++. ...| |...|+-+-..+...      
T Consensus       169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~  246 (331)
T 3dss_A          169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL  246 (331)
T ss_dssp             HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred             HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence            888763  234556666666665554              4578888888877 5556 677787666665554      


Q ss_pred             -----CChhHHHHHHHHHhccCCCCchhHHHHHHHh---hhCCCchhHHHHHHHhhh
Q 004369          571 -----GNMELGFYAAEQLLKLKPKDCESYAMLLDIF---VSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       571 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~  619 (758)
                           +.++++++.++++++++|++.-.+..++...   ...|..++....+.++.+
T Consensus       247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence                 3578888899999999998865554444322   245667777777777765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.07  E-value=2.7e-06  Score=72.09  Aligned_cols=81  Identities=12%  Similarity=0.031  Sum_probs=40.7

Q ss_pred             CCHHHHHHHHHHc-CC---CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369          539 GCIEEAFDFIKKM-DF---EP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV  613 (758)
Q Consensus       539 g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  613 (758)
                      |++++|+..|++. ..   .| +...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|...
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~   83 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL   83 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence            4444555555444 32   13 2334555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHhhh
Q 004369          614 KNLTRE  619 (758)
Q Consensus       614 ~~~m~~  619 (758)
                      ++...+
T Consensus        84 ~~~al~   89 (117)
T 3k9i_A           84 LLKIIA   89 (117)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.07  E-value=1.4e-05  Score=68.04  Aligned_cols=97  Identities=10%  Similarity=-0.011  Sum_probs=67.8

Q ss_pred             HHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc
Q 004369          493 VGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH  570 (758)
Q Consensus       493 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~  570 (758)
                      ..+...+.+.|++++|...|+.+.+.  -+.+...|..+..++.+.|++++|+..+++. ...| +...|..+...+...
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34445666777888888887777653  2234667777788888888888888888777 5556 566788888888888


Q ss_pred             CChhHHHHHHHHHhccCCCCc
Q 004369          571 GNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       571 g~~~~a~~~~~~~~~~~p~~~  591 (758)
                      |++++|...++++++.+|+++
T Consensus        99 g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHhCcCCC
Confidence            888888888888888888753

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.07  E-value=1.9e-05  Score=65.56  Aligned_cols=99  Identities=15%  Similarity=0.067  Sum_probs=70.3

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC---CHHHHHHHHHH
Q 004369          491 TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP---NEVIWSVFIAG  566 (758)
Q Consensus       491 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~  566 (758)
                      .+..+...+...|++++|...|+.+.+.  .+.+...+..+...|.+.|++++|.+.+++. ...|   +...|..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            4445555666667777777777766552  2234566777777788888888888887776 3344   46678888888


Q ss_pred             HHHc-CChhHHHHHHHHHhccCCCCc
Q 004369          567 CRRH-GNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       567 ~~~~-g~~~~a~~~~~~~~~~~p~~~  591 (758)
                      +... |++++|.+.++++++..|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            8888 888888888888888888754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.05  E-value=1.4e-05  Score=68.63  Aligned_cols=108  Identities=6%  Similarity=-0.075  Sum_probs=59.3

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CC----CCC----HHHHHH
Q 004369          492 FVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DF----EPN----EVIWSV  562 (758)
Q Consensus       492 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~  562 (758)
                      +..+...+...|++++|..+|+.+.+.  .+.+...+..+...|...|++++|...++++ ..    .++    ..+|..
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            333444444455555555555554432  1223444555555555556666665555554 11    112    455666


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369          563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV  602 (758)
Q Consensus       563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  602 (758)
                      +...+...|++++|...++++++..| ++.....+..++.
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            77777777777777777777777776 4555555554443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.05  E-value=0.00089  Score=67.25  Aligned_cols=229  Identities=10%  Similarity=0.073  Sum_probs=161.0

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHH-HHHHHHHHhcccc----------hHHHHHHHHHHHHcCCCChHHHHhHHhhhHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYT-FSSILTICSRLVA----------LEQGEQIHALTLKTGFLSDVVVGTALVNMYK  434 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~----------~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~  434 (758)
                      ....++|++++..+...  .|+..| ++.--..+...+.          ++++..++..+.... +-+..+|+.-...+.
T Consensus        43 ~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~  119 (331)
T 3dss_A           43 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS  119 (331)
T ss_dssp             TCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence            33445899999999875  565443 2222222222222          567778888887764 557778887777777


Q ss_pred             hcC--CHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc------
Q 004369          435 KCG--RIERASRVFVEMS---TRTLISWTSMITGFANHSL-SHQALQLFEDMLLAGVRPNQVTFVGALAACSNA------  502 (758)
Q Consensus       435 ~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------  502 (758)
                      +.|  .++++..+++++.   .+|..+|+--.-.+...|. ++++++.++++.+..+ -|...|+.....+.+.      
T Consensus       120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~  198 (331)
T 3dss_A          120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDS  198 (331)
T ss_dssp             HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC--
T ss_pred             ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcccc
Confidence            777  4899999999887   5577889888888888888 6999999999998642 2455555544444433      


Q ss_pred             --------ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHc-CCCCCHHHHHH
Q 004369          503 --------GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRL-----------GCIEEAFDFIKKM-DFEPNEVIWSV  562 (758)
Q Consensus       503 --------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~~~  562 (758)
                              +.++++++++......  .+-|...|+.+-..+.+.           +.++++++.++++ ...||. .|..
T Consensus       199 ~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l  275 (331)
T 3dss_A          199 GPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCL  275 (331)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHH
Confidence                    5688999999988763  334567777666666655           5689999999998 677764 4543


Q ss_pred             HHHHHH-----HcCChhHHHHHHHHHhccCCCCchhHHHHHHHh
Q 004369          563 FIAGCR-----RHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF  601 (758)
Q Consensus       563 ll~~~~-----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  601 (758)
                      +..+..     ..|..++....+.++.+++|...+-|..|..-+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          276 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             HHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            333221     356778899999999999999888888776554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.04  E-value=2.2e-05  Score=78.23  Aligned_cols=106  Identities=7%  Similarity=-0.045  Sum_probs=81.8

Q ss_pred             CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHH
Q 004369          488 NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIA  565 (758)
Q Consensus       488 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~  565 (758)
                      +...+..+...+...|++++|...|+.+.+.  .+.+...|..+...|.+.|++++|++.+++. ...| +...|..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3556677777888888888888888888763  2235677888888888888888888888887 6666 5667888888


Q ss_pred             HHHHcCChhHHHHHHHHHhccCCCCchhHH
Q 004369          566 GCRRHGNMELGFYAAEQLLKLKPKDCESYA  595 (758)
Q Consensus       566 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  595 (758)
                      ++...|++++|...++++++++|+++..+.
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  110 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFG  110 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence            888888888888888888888887654433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.03  E-value=0.00015  Score=79.65  Aligned_cols=168  Identities=10%  Similarity=-0.011  Sum_probs=135.4

Q ss_pred             CHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccc
Q 004369          438 RIERASRVFVEMS---TRTLISWTSMITGFANHSL----------SHQALQLFEDMLLAGVRP-NQVTFVGALAACSNAG  503 (758)
Q Consensus       438 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g  503 (758)
                      .-++|.+.++++.   ..+...|+.--..+...|+          ++++++.++++.+.  .| +..+|..-..++.+.|
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence            3456777777765   3355677776666666666          89999999999985  44 4667877777888888


Q ss_pred             --cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc--------
Q 004369          504 --MVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG-CIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH--------  570 (758)
Q Consensus       504 --~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------  570 (758)
                        +++++.+.++.+.+.  -+-+...|+.-..++.+.| ..+++++.++++ ...| |...|+.....+...        
T Consensus       122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence              779999999999873  2345677888888888899 899999999998 6677 788899988887763        


Q ss_pred             ------CChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchh
Q 004369          571 ------GNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWED  609 (758)
Q Consensus       571 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  609 (758)
                            +.++++.+.++++++++|+|..+|..+..++.+.|+.++
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                  457899999999999999999999999999999998655

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.02  E-value=2.4e-05  Score=67.19  Aligned_cols=31  Identities=10%  Similarity=-0.036  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          559 IWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       559 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      +|..+...+...|++++|++.++++++..|+
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            4555666666667777777777777666554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.01  E-value=7.8e-05  Score=79.50  Aligned_cols=163  Identities=6%  Similarity=-0.145  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH----HHHHHHHHHHhccccHHHHHHHHHHhhhh---cCCCCC-HH
Q 004369          456 SWTSMITGFANHSLSHQALQLFEDMLLA-GVRPNQ----VTFVGALAACSNAGMVYEALGYFEMMQKE---YKIKPV-MD  526 (758)
Q Consensus       456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~  526 (758)
                      ++..+...|...|++++|.+.+.++... +..++.    .+.+.+-..+...|+++++..+++.....   .+..+. ..
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            3567788888888888888888877652 111222    12233333445678888888888776542   122222 56


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc-----C--CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccC---CCC----c
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKM-----D--FEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK---PKD----C  591 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m-----~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~  591 (758)
                      .+..|...|...|++++|..++++.     +  -+| ...++..++..|...|++++|...+++++...   +.+    .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            7788899999999999999988876     1  122 24468888889999999999999998887653   222    2


Q ss_pred             hhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369          592 ESYAMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       592 ~~~~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                      ..+..++..+...|++++|.+.+....
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            456778888899999999988776654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.00  E-value=2.6e-05  Score=80.97  Aligned_cols=137  Identities=12%  Similarity=0.076  Sum_probs=105.8

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHH
Q 004369          454 LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLI  532 (758)
Q Consensus       454 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li  532 (758)
                      ...|..+...+.+.|++++|+..|++.++.  .|+..          ....       .+...   ...| +...|..+.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla  280 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIG  280 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHH
Confidence            345777888888888888888888887752  11100          0001       11111   1122 356788899


Q ss_pred             HHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhH
Q 004369          533 DMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDV  610 (758)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  610 (758)
                      .+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++
T Consensus       281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998 7777 5778999999999999999999999999999999999999999999988888776


Q ss_pred             HH
Q 004369          611 AV  612 (758)
Q Consensus       611 ~~  612 (758)
                      .+
T Consensus       361 ~k  362 (370)
T 1ihg_A          361 EK  362 (370)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.99  E-value=1.6e-05  Score=71.80  Aligned_cols=77  Identities=13%  Similarity=0.062  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc-hhHHHHHHHh
Q 004369          525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC-ESYAMLLDIF  601 (758)
Q Consensus       525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~  601 (758)
                      ...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++ .....|..+.
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            467888899999999999999999887 5566 577899999999999999999999999999999987 5555554444

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.99  E-value=7e-06  Score=69.46  Aligned_cols=94  Identities=16%  Similarity=0.187  Sum_probs=69.4

Q ss_pred             ccccHHHHHHHHHHhhhhcCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 004369          501 NAGMVYEALGYFEMMQKEYKI-KP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELG  576 (758)
Q Consensus       501 ~~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a  576 (758)
                      ..|++++|...|+++.+. +. .| +...+..+..+|.+.|++++|++.+++. ...| +..++..+..++...|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence            356777888888877652 10 23 3567788888888999999999988887 4455 567788888899999999999


Q ss_pred             HHHHHHHhccCCCCchhHH
Q 004369          577 FYAAEQLLKLKPKDCESYA  595 (758)
Q Consensus       577 ~~~~~~~~~~~p~~~~~~~  595 (758)
                      +..++++++..|+++....
T Consensus        81 ~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHH
Confidence            9999999999988866543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.99  E-value=0.0017  Score=65.59  Aligned_cols=228  Identities=11%  Similarity=0.031  Sum_probs=162.6

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCH-HHHHHHHHHHhccc-chHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhc-C-CHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDL-YTFSSILTICSRLV-ALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKC-G-RIER  441 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~-g-~~~~  441 (758)
                      .+..++|++++.++...  .|+. ..++.--..+...+ .++++..+.+.+++.. +.+..+++.-...+.+. + ++++
T Consensus        67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~  143 (349)
T 3q7a_A           67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS  143 (349)
T ss_dssp             TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred             CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence            66778999999999885  4544 34555455556667 5999999999998765 55677787776666666 6 8899


Q ss_pred             HHHHHHhcCCC---ChhHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc------
Q 004369          442 ASRVFVEMSTR---TLISWTSMITGFANHSLSH--------QALQLFEDMLLAGVRPNQVTFVGALAACSNAGM------  504 (758)
Q Consensus       442 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------  504 (758)
                      ++++++++.+.   |..+|+--.-.+.+.|.++        ++++.++++.+.. .-|...|+.....+.+.+.      
T Consensus       144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~  222 (349)
T 3q7a_A          144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR  222 (349)
T ss_dssp             HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence            99999998854   5567776655555555555        9999999999864 2356667776666777665      


Q ss_pred             -HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHc-CC-------CC
Q 004369          505 -VYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCI--------------------EEAFDFIKKM-DF-------EP  555 (758)
Q Consensus       505 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m-~~-------~p  555 (758)
                       +++++++++.+...  .+-|...|+.+-..+.+.|+.                    .+..++..++ +.       .+
T Consensus       223 ~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (349)
T 3q7a_A          223 SLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP  300 (349)
T ss_dssp             HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred             HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence             78899999888763  344577788777777777753                    4445555555 22       24


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHh-ccCCCCchhHHHHHH
Q 004369          556 NEVIWSVFIAGCRRHGNMELGFYAAEQLL-KLKPKDCESYAMLLD  599 (758)
Q Consensus       556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~  599 (758)
                      ....+..|+..|...|+.++|.++++.+. +.+|-....+...+.
T Consensus       301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~  345 (349)
T 3q7a_A          301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR  345 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence            67789999999999999999999999997 678876555554443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.99  E-value=3.6e-06  Score=70.21  Aligned_cols=93  Identities=14%  Similarity=0.058  Sum_probs=78.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC------chhH
Q 004369          523 PVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD------CESY  594 (758)
Q Consensus       523 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~  594 (758)
                      ++...+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++      ...+
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            34567788888999999999999999887 4455 67889999999999999999999999999999998      7788


Q ss_pred             HHHHHHhhhCCCchhHHHHHH
Q 004369          595 AMLLDIFVSAGRWEDVAVVKN  615 (758)
Q Consensus       595 ~~l~~~~~~~g~~~~a~~~~~  615 (758)
                      ..++.++...|++++|...++
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHhHhhhHhHHH
Confidence            888999988888877765444

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.97  E-value=4.1e-05  Score=68.38  Aligned_cols=93  Identities=14%  Similarity=0.086  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCC------CCch
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKM----DFEPN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKP------KDCE  592 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~  592 (758)
                      .+..+...|...|++++|.+.+++.    +..++    ..++..+...+...|++++|...++++++..+      ....
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            3444555555555555555555544    00011    33455666666667777777777666665421      1234


Q ss_pred             hHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          593 SYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       593 ~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      .+..++.+|...|++++|.+.++...+
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            567777788888888888877776554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.96  E-value=8.5e-05  Score=63.63  Aligned_cols=104  Identities=10%  Similarity=-0.062  Sum_probs=69.0

Q ss_pred             HHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHHHHHH
Q 004369          496 LAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN----EVIWSVFIAGCRR  569 (758)
Q Consensus       496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~  569 (758)
                      ...+...|++++|...|+.+.+...-.+. ...+..+...|.+.|++++|.+.+++. ...|+    ...+..+...+..
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~   88 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG   88 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence            33455667777777777766653211111 145666777777778888888777776 33343    4557777888888


Q ss_pred             cCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 004369          570 HGNMELGFYAAEQLLKLKPKDCESYAMLLD  599 (758)
Q Consensus       570 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  599 (758)
                      .|++++|...++++++..|+++........
T Consensus        89 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~  118 (129)
T 2xev_A           89 EGKNTEAQQTLQQVATQYPGSDAARVAQER  118 (129)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            888888888888888888887655544433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.94  E-value=4.6e-05  Score=79.14  Aligned_cols=112  Identities=5%  Similarity=-0.066  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 004369          489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEP-NEVIWSVFIAGC  567 (758)
Q Consensus       489 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~  567 (758)
                      ...+..+...+.+.|++++|...|+++.+..   +..          ......+++.      ...| +..+|..+..++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~  283 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence            3445555666666777777777766665410   100          0000111111      1334 467799999999


Q ss_pred             HHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          568 RRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       568 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      .+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.++...+
T Consensus       284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~  335 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE  335 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999876

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.93  E-value=2.6e-05  Score=68.65  Aligned_cols=71  Identities=10%  Similarity=0.099  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc-CC-------CCC-HHHH----HHHHHHHHHcCChhHHHHHHHHHhccCCCCchh
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKM-DF-------EPN-EVIW----SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES  593 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-------~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  593 (758)
                      .|..+..++.+.|++++|+..+++. .+       .|+ ...|    .....++...|++++|+..++++++++|+|...
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            6677777777777777777776665 44       885 5678    999999999999999999999999999998765


Q ss_pred             HHHH
Q 004369          594 YAML  597 (758)
Q Consensus       594 ~~~l  597 (758)
                      +..+
T Consensus       139 ~~~~  142 (159)
T 2hr2_A          139 TPGK  142 (159)
T ss_dssp             CTTH
T ss_pred             HHHH
Confidence            4443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.92  E-value=5.8e-05  Score=67.40  Aligned_cols=132  Identities=14%  Similarity=0.056  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HH
Q 004369          456 SWTSMITGFANHSLSHQALQLFEDMLLAGVR-PN----QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MD  526 (758)
Q Consensus       456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~  526 (758)
                      ++..+...|...|++++|+..+++..+.... ++    ..++..+...+...|++++|..+++...+...-.++    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            3444455555555555555555554432100 11    134555555666666666666666665442111111    34


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369          527 HYMCLIDMFVRLGCIEEAFDFIKKM-------DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK  587 (758)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  587 (758)
                      .+..+...+...|++++|.+.+++.       +..+ ...++..+...+...|++++|...+++++++.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            5666777777777777777777665       1111 13456777777888888888888888877653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.89  E-value=2.6e-05  Score=80.05  Aligned_cols=147  Identities=11%  Similarity=-0.024  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 004369          455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDM  534 (758)
Q Consensus       455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~  534 (758)
                      ..|..+...+.+.|++++|+..|++....  .|+...       +...|+.+++...+.           ...|..+..+
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~  239 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence            34666777778888899999998888763  455432       234455555443221           1367788888


Q ss_pred             HHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh-hhCCCchhHH
Q 004369          535 FVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF-VSAGRWEDVA  611 (758)
Q Consensus       535 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~  611 (758)
                      |.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..|..+. ...+..+++.
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998887 5555 6778888999999999999999999999999999888888888884 4456777788


Q ss_pred             HHHHHhhhCC
Q 004369          612 VVKNLTREEK  621 (758)
Q Consensus       612 ~~~~~m~~~~  621 (758)
                      +.++.|.+..
T Consensus       320 ~~~~~~l~~~  329 (338)
T 2if4_A          320 EMYKGIFKGK  329 (338)
T ss_dssp             ----------
T ss_pred             HHHHHhhCCC
Confidence            8888776543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.88  E-value=2.4e-05  Score=80.38  Aligned_cols=114  Identities=10%  Similarity=-0.099  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 004369          491 TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRH  570 (758)
Q Consensus       491 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~  570 (758)
                      .+..+...+.+.|++++|...|+.+.+.   .|+...       +...|+.+++...+.       ...|..+..++.+.
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~  243 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIKL  243 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence            3556666788899999999999988653   344321       223444555544332       23788899999999


Q ss_pred             CChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369          571 GNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       571 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  621 (758)
                      |++++|+..++++++++|++...|..++.+|...|++++|...++...+..
T Consensus       244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~  294 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA  294 (338)
T ss_dssp             TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999999999999999987643

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.86  E-value=6.1e-05  Score=80.87  Aligned_cols=96  Identities=7%  Similarity=-0.080  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----------------HHHHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369          525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN----------------EVIWSVFIAGCRRHGNMELGFYAAEQLLKLK  587 (758)
Q Consensus       525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  587 (758)
                      ...|..+...|.+.|++++|+..|++. ...|+                ...|..+..++.+.|++++|+..++++++++
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            345566667777777777777777766 22332                5789999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          588 PKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       588 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      |+++.+|..++.+|...|++++|...++...+.
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l  380 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  380 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998863

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.84  E-value=5.7e-05  Score=60.01  Aligned_cols=81  Identities=19%  Similarity=0.359  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369          525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV  602 (758)
Q Consensus       525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  602 (758)
                      ...+..+...+.+.|++++|++.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            456777888889999999999999887 4445 57788899999999999999999999999999999999999998887


Q ss_pred             hCC
Q 004369          603 SAG  605 (758)
Q Consensus       603 ~~g  605 (758)
                      ..|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.82  E-value=0.0001  Score=78.95  Aligned_cols=125  Identities=13%  Similarity=0.093  Sum_probs=94.1

Q ss_pred             HhccccHHHHHHHHHHhhhhc----C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc---------CCCCC-HHHHHH
Q 004369          499 CSNAGMVYEALGYFEMMQKEY----K-IKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM---------DFEPN-EVIWSV  562 (758)
Q Consensus       499 ~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~  562 (758)
                      +...|++++|..++++..+..    | -.|+ ..+++.|..+|...|++++|+.++++.         +..|+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            446677777777776665421    1 1122 467888888888888888888887775         33454 456899


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhc-----cCCCCchh---HHHHHHHhhhCCCchhHHHHHHHhhhCCCC
Q 004369          563 FIAGCRRHGNMELGFYAAEQLLK-----LKPKDCES---YAMLLDIFVSAGRWEDVAVVKNLTREEKLS  623 (758)
Q Consensus       563 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  623 (758)
                      |...|...|++++|+.+++++++     ++|++|.+   ...|..++...|++++|..++..++++-++
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~  467 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN  467 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999987     46776554   457788889999999999999999886543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.75  E-value=0.00028  Score=75.12  Aligned_cols=158  Identities=7%  Similarity=-0.033  Sum_probs=117.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH
Q 004369          462 TGFANHSLSHQALQLFEDMLLAGVRPN----------------QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM  525 (758)
Q Consensus       462 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~  525 (758)
                      ..+.+.|++++|++.|.++.+......                ...+..+...|...|++++|.+++..+.+..+..++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            345667888888888888877432211                1246778889999999999999999887643333332


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhcc------C
Q 004369          526 ----DHYMCLIDMFVRLGCIEEAFDFIKKM-------DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKL------K  587 (758)
Q Consensus       526 ----~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~  587 (758)
                          ...+.+...+...|+.++|.+++++.       +..+. ..++..|...+...|++++|...+++++..      .
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                23344445555678999999988776       33333 457888999999999999999999988764      2


Q ss_pred             CCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          588 PKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       588 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      |.....+..++.+|...|++++|..+++....
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  203 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART  203 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            33456888999999999999999999888764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.74  E-value=6.9e-05  Score=62.86  Aligned_cols=77  Identities=9%  Similarity=0.057  Sum_probs=65.3

Q ss_pred             HHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          543 EAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       543 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...++...+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456666665 5556 5778888899999999999999999999999999999999999999999999999999888765

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.72  E-value=9.7e-05  Score=60.19  Aligned_cols=64  Identities=16%  Similarity=0.153  Sum_probs=59.8

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.++...+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6778999999999999999999999999999999999999999999999999999999998765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.72  E-value=2e-05  Score=69.21  Aligned_cols=84  Identities=12%  Similarity=0.071  Sum_probs=67.7

Q ss_pred             HcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC----------hhHHHHHHHHHhccCCCCchhHHHHHHHhhhC
Q 004369          537 RLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGN----------MELGFYAAEQLLKLKPKDCESYAMLLDIFVSA  604 (758)
Q Consensus       537 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  604 (758)
                      |.+++++|++.+++. ...| +...|..+..++...++          +++|+..++++++++|++..+|..|+++|.+.
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            455667777777766 4455 56667767776666655          46999999999999999999999999999987


Q ss_pred             C-----------CchhHHHHHHHhhhC
Q 004369          605 G-----------RWEDVAVVKNLTREE  620 (758)
Q Consensus       605 g-----------~~~~a~~~~~~m~~~  620 (758)
                      |           ++++|.+.+++..+.
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHh
Confidence            5           899999999999874

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.51  E-value=0.00011  Score=64.54  Aligned_cols=89  Identities=13%  Similarity=0.054  Sum_probs=57.1

Q ss_pred             cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHH
Q 004369          502 AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGC----------IEEAFDFIKKM-DFEP-NEVIWSVFIAGCRR  569 (758)
Q Consensus       502 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~  569 (758)
                      .+.+++|.+.++...+.  -+.+...|..+..++...|+          +++|+..|++. .+.| +...|..+..+|..
T Consensus        15 ~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            34445555555554432  11234444445555554443          45777777776 5666 45677777777776


Q ss_pred             c-----------CChhHHHHHHHHHhccCCCCch
Q 004369          570 H-----------GNMELGFYAAEQLLKLKPKDCE  592 (758)
Q Consensus       570 ~-----------g~~~~a~~~~~~~~~~~p~~~~  592 (758)
                      .           |++++|+..++++++++|++..
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence            6           4899999999999999999753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.43  E-value=0.00061  Score=72.96  Aligned_cols=115  Identities=10%  Similarity=-0.076  Sum_probs=87.8

Q ss_pred             HHHHcCCHHHHHHHHHHc---------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhcc-----CCCCc---hhHH
Q 004369          534 MFVRLGCIEEAFDFIKKM---------DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKL-----KPKDC---ESYA  595 (758)
Q Consensus       534 ~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~  595 (758)
                      .+...|++++|+.++++.         +..|+ ..+++.|..+|...|++++|+.++++++++     +|++|   ..+.
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            455789999999988776         22343 456999999999999999999999999873     55554   4678


Q ss_pred             HHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 004369          596 MLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKC  666 (758)
Q Consensus       596 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~  666 (758)
                      .|+.+|..+|++++|..++++..+--.                 -.. ...||...++...+.+...+++.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-----------------~~l-G~~Hp~~~~~~~~l~~~~~e~~~  450 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILL-----------------VTH-GPSHPITKDLEAMRMQTEMELRM  450 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------HHT-CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHH-----------------HHh-CCCChHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999998765210                 011 14799999888777776655543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.42  E-value=0.0018  Score=71.10  Aligned_cols=149  Identities=10%  Similarity=0.052  Sum_probs=121.4

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcccc----------HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 004369          467 HSLSHQALQLFEDMLLAGVRPNQ-VTFVGALAACSNAGM----------VYEALGYFEMMQKEYKIKPVMDHYMCLIDMF  535 (758)
Q Consensus       467 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  535 (758)
                      ....++|++.++++.+  +.|+. ..|+.--.++.+.|+          ++++.+.++.+.+.  -+-+...|..-..++
T Consensus        42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l  117 (567)
T 1dce_A           42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL  117 (567)
T ss_dssp             TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            3446789999999998  46764 455555555666666          99999999999874  234567788888888


Q ss_pred             HHcC--CHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC-ChhHHHHHHHHHhccCCCCchhHHHHHHHhhhC------
Q 004369          536 VRLG--CIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHG-NMELGFYAAEQLLKLKPKDCESYAMLLDIFVSA------  604 (758)
Q Consensus       536 ~~~g--~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------  604 (758)
                      .+.|  ++++++++++++ ...| |...|+.-.....+.| .++++.+.++++++.+|.|..+|...+.++.+.      
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence            8999  779999999999 5566 7889999999999999 899999999999999999999999999998774      


Q ss_pred             --------CCchhHHHHHHHhhh
Q 004369          605 --------GRWEDVAVVKNLTRE  619 (758)
Q Consensus       605 --------g~~~~a~~~~~~m~~  619 (758)
                              ++++++.+..+....
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~  220 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFF  220 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHh
Confidence                    556888887777654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.38  E-value=0.0043  Score=62.48  Aligned_cols=139  Identities=11%  Similarity=0.013  Sum_probs=82.9

Q ss_pred             CCChhHHHHHHHHHHh--cCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc--------cccHHHHHHHHHHhh
Q 004369          451 TRTLISWTSMITGFAN--HSL---SHQALQLFEDMLLAGVRPN-QVTFVGALAACSN--------AGMVYEALGYFEMMQ  516 (758)
Q Consensus       451 ~~~~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~--------~g~~~~a~~~~~~~~  516 (758)
                      ..+...|...+.+...  .+.   ..+|+.+|++..+  ..|+ ...+..+..++..        ..........+....
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            4466777777765442  233   5789999999988  4777 3344443333321        001111111222111


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369          517 KEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC  591 (758)
Q Consensus       517 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  591 (758)
                      .....+.+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|..+
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            11122445666777666666678888888887777 4456766676677777777888888888888888877653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.32  E-value=0.00058  Score=71.98  Aligned_cols=114  Identities=8%  Similarity=0.063  Sum_probs=77.5

Q ss_pred             HHHHcCCHHHHHHHHHHc------CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhcc-----CCCCc---hhHH
Q 004369          534 MFVRLGCIEEAFDFIKKM------DFEPN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKL-----KPKDC---ESYA  595 (758)
Q Consensus       534 ~~~~~g~~~~A~~~~~~m------~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~  595 (758)
                      -+.+.|++++|++++++.      -+.|+    ..+++.|..+|...|++++|+.+++++++.     +|++|   ..+.
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            344556666666666554      11221    345777888888888888888888877753     44443   4677


Q ss_pred             HHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 004369          596 MLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAK  665 (758)
Q Consensus       596 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~  665 (758)
                      .|+.+|...|++++|..++++..+--.                 ... ...||...+++..|.+...+|+
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~-----------------~~l-G~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMR-----------------VTH-GREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------HHT-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHH-----------------Hhc-CCCChHHHHHHHHHHHHHHHHh
Confidence            888889999999999998888765110                 011 1379999988888888777775

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.28  E-value=0.0007  Score=56.52  Aligned_cols=81  Identities=17%  Similarity=0.150  Sum_probs=57.1

Q ss_pred             HHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 004369          507 EALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLL  584 (758)
Q Consensus       507 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  584 (758)
                      ++...|+.+.+.  .+.+...+..+...|.+.|++++|++.+++. ...| +...|..+...+...|++++|...+++++
T Consensus         3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345556655441  2234567777777888888888888888776 4445 46677888888888888888888888888


Q ss_pred             ccCCC
Q 004369          585 KLKPK  589 (758)
Q Consensus       585 ~~~p~  589 (758)
                      ++.|.
T Consensus        81 ~~~~~   85 (115)
T 2kat_A           81 AAAQS   85 (115)
T ss_dssp             HHHHH
T ss_pred             Hhccc
Confidence            87764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.28  E-value=0.0012  Score=52.64  Aligned_cols=68  Identities=10%  Similarity=-0.002  Sum_probs=60.2

Q ss_pred             CCHHHHHHHHHHHHHcCC---hhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369          555 PNEVIWSVFIAGCRRHGN---MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL  622 (758)
Q Consensus       555 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  622 (758)
                      +|...|..+..++...++   .++|...++++++++|+++.....++..+...|++++|...++.+.+...
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            467788888888876655   69999999999999999999999999999999999999999999987544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.00067  Score=55.95  Aligned_cols=66  Identities=9%  Similarity=0.020  Sum_probs=61.3

Q ss_pred             CCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          555 PNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       555 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      ++...|..+...+...|++++|...+++++++.|+++..+..++.+|...|++++|.+.++...+.
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            356678889999999999999999999999999999999999999999999999999999998763

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.22  E-value=0.0017  Score=51.14  Aligned_cols=64  Identities=14%  Similarity=0.279  Sum_probs=59.8

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3567888999999999999999999999999999999999999999999999999999998876

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.20  E-value=0.0027  Score=55.06  Aligned_cols=110  Identities=9%  Similarity=-0.077  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH----cCCHHH
Q 004369          468 SLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR----LGCIEE  543 (758)
Q Consensus       468 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~  543 (758)
                      +++++|++.|++..+.| .|+..    +...|...+.+++|.++|++..+.    -+...+..|..+|..    .+++++
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence            34566666666666655 33332    334455555566666666665542    233444555555554    455555


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhcc
Q 004369          544 AFDFIKKMDFEPNEVIWSVFIAGCRR----HGNMELGFYAAEQLLKL  586 (758)
Q Consensus       544 A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~  586 (758)
                      |.+.|++.-..-+...+..|...|..    .+|.++|...++++.+.
T Consensus        80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            55555554111234444444444444    44555555555555444

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.08  E-value=0.0031  Score=54.63  Aligned_cols=113  Identities=7%  Similarity=-0.125  Sum_probs=90.8

Q ss_pred             cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHH
Q 004369          502 AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRR----HGNMELGF  577 (758)
Q Consensus       502 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~  577 (758)
                      .+++++|.++|++..+. + .|+..    |..+|...+.+++|.+.|++.-..-+...+..|...|..    .+|.++|.
T Consensus         8 ~~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            45788899999988773 4 34433    777888888889999999988223477788888888887    78999999


Q ss_pred             HHHHHHhccCCCCchhHHHHHHHhhh----CCCchhHHHHHHHhhhCCC
Q 004369          578 YAAEQLLKLKPKDCESYAMLLDIFVS----AGRWEDVAVVKNLTREEKL  622 (758)
Q Consensus       578 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~  622 (758)
                      ..++++.+.  .++..+..|+.+|..    .+++++|.+.+++..+.|.
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999999877  567888999999988    8899999999998888764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.05  E-value=0.0028  Score=54.85  Aligned_cols=91  Identities=12%  Similarity=-0.022  Sum_probs=65.3

Q ss_pred             CCHHHHHHHHHHHHHcC---ChhHHHHHHHHHhccC-C-CCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCcee
Q 004369          555 PNEVIWSVFIAGCRRHG---NMELGFYAAEQLLKLK-P-KDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWS  629 (758)
Q Consensus       555 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s  629 (758)
                      ++..+.-.+.+++.+.+   +.++|..+++.+++.+ | ++...+..|+-+|.+.|++++|.+.++.+.+          
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~----------   99 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ----------   99 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----------
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh----------
Confidence            56777777788888777   5668888888888877 6 4567778888888888888888888888876          


Q ss_pred             EEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCccc
Q 004369          630 WIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQ  671 (758)
Q Consensus       630 ~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~  671 (758)
                                      ..|+..+.......+.+++++.|.+-
T Consensus       100 ----------------ieP~n~QA~~Lk~~ie~~~~kdgl~G  125 (152)
T 1pc2_A          100 ----------------TEPQNNQAKELERLIDKAMKKDGLVG  125 (152)
T ss_dssp             ----------------HCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             ----------------cCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence                            34444554444555566677776543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.00  E-value=0.00088  Score=70.47  Aligned_cols=62  Identities=6%  Similarity=-0.019  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhcc-----CCCCc---hhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          558 VIWSVFIAGCRRHGNMELGFYAAEQLLKL-----KPKDC---ESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       558 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      .+++.|..+|...|++++|+.++++++++     +|+++   ..+..|+.+|..+|++++|..++++..+
T Consensus       341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            34666666666666666666666666542     34333   3566677777777777777777776654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.98  E-value=0.043  Score=45.47  Aligned_cols=140  Identities=4%  Similarity=-0.044  Sum_probs=102.2

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004369          465 ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA  544 (758)
Q Consensus       465 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A  544 (758)
                      .-.|..++..++..+....   .+..-|+-++.-....-+-+-..+.++.+-+-+.+.              .+|++...
T Consensus        18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV   80 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV   80 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred             HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence            3457777788887777653   244556666655555566666677777665533332              46666666


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCC
Q 004369          545 FDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLS  623 (758)
Q Consensus       545 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  623 (758)
                      ...+-.++.  +..-.+.-+......|+.+.-.++...++..+|.+++....++++|.+.|...+|.+++++.-++|++
T Consensus        81 i~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           81 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            666666643  44556677888889999999999999988777888999999999999999999999999999999885

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.98  E-value=0.0011  Score=53.77  Aligned_cols=66  Identities=8%  Similarity=0.014  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          524 VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      +...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|...+++++++.|.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            4566777888888888888888888877 4445 4567888888888888888888888888877653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.96  E-value=0.0026  Score=51.12  Aligned_cols=64  Identities=17%  Similarity=0.304  Sum_probs=52.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHc-CCCC-CHH-HHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369          531 LIDMFVRLGCIEEAFDFIKKM-DFEP-NEV-IWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESY  594 (758)
Q Consensus       531 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  594 (758)
                      ....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|...++++++++|+++..+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            456677888888888888887 4455 556 788888888899999999999999999999887766

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.84  E-value=0.006  Score=64.12  Aligned_cols=94  Identities=13%  Similarity=0.052  Sum_probs=65.0

Q ss_pred             cccHHHHHHHHHHhhhhc--CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHc---------CCCCC-HHHHHHHHH
Q 004369          502 AGMVYEALGYFEMMQKEY--KIK---PV-MDHYMCLIDMFVRLGCIEEAFDFIKKM---------DFEPN-EVIWSVFIA  565 (758)
Q Consensus       502 ~g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~  565 (758)
                      .|++++|..++++..+..  -+.   |+ ..+++.|..+|...|++++|+.++++.         +..|+ ..+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            456677776666654421  111   22 456777888888888888888777765         33454 345889999


Q ss_pred             HHHHcCChhHHHHHHHHHhc-----cCCCCchhHH
Q 004369          566 GCRRHGNMELGFYAAEQLLK-----LKPKDCESYA  595 (758)
Q Consensus       566 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~  595 (758)
                      .|...|++++|+.+++++++     ++|++|.+-.
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            99999999999999998887     4677765543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.73  E-value=0.0036  Score=50.28  Aligned_cols=58  Identities=19%  Similarity=0.316  Sum_probs=53.8

Q ss_pred             HHHHHHHcCChhHHHHHHHHHhccCCCCch-hHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCE-SYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      ....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.++...+.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            456778899999999999999999999999 9999999999999999999999998863

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.68  E-value=0.013  Score=61.65  Aligned_cols=99  Identities=11%  Similarity=0.082  Sum_probs=63.0

Q ss_pred             HhccccHHHHHHHHHHhhhhc--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc---------CCCCC-HHHHHH
Q 004369          499 CSNAGMVYEALGYFEMMQKEY--KIKPV----MDHYMCLIDMFVRLGCIEEAFDFIKKM---------DFEPN-EVIWSV  562 (758)
Q Consensus       499 ~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~  562 (758)
                      +.+.|++++|..++++..+..  -+.|+    ..+++.|..+|...|++++|+.++++.         +..|+ ..+++.
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            334556666666665554311  11111    345666777777777777777776655         33444 345888


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhc-----cCCCCchhHHHH
Q 004369          563 FIAGCRRHGNMELGFYAAEQLLK-----LKPKDCESYAML  597 (758)
Q Consensus       563 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~l  597 (758)
                      |...|...|++++|+.+++++++     ++|++|.+-..+
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  416 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI  416 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            88888889999999888888876     467776655443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.24  E-value=0.014  Score=56.22  Aligned_cols=87  Identities=14%  Similarity=0.167  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHc-CCCCC---HHHHHHHHHHHHHc-----CChhHHHHHHHHHhccCCCC-chhHHHHHHHhhhC-CCchh
Q 004369          541 IEEAFDFIKKM-DFEPN---EVIWSVFIAGCRRH-----GNMELGFYAAEQLLKLKPKD-CESYAMLLDIFVSA-GRWED  609 (758)
Q Consensus       541 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~  609 (758)
                      ..+|...+++. .+.|+   ...|..|...|...     |+.++|++.++++++++|+. ..+++.+++.|+.. |+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            45666666666 56676   56788888888884     99999999999999999974 99999999999885 99999


Q ss_pred             HHHHHHHhhhCCCCCCCc
Q 004369          610 VAVVKNLTREEKLSETDD  627 (758)
Q Consensus       610 a~~~~~~m~~~~~~~~~~  627 (758)
                      +.+.+++.........|+
T Consensus       259 a~~~L~kAL~a~p~~~P~  276 (301)
T 3u64_A          259 FDEALDRALAIDPESVPH  276 (301)
T ss_dssp             HHHHHHHHHHCCGGGCSS
T ss_pred             HHHHHHHHHcCCCCCCCC
Confidence            999999998866544344

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.19  E-value=0.085  Score=60.93  Aligned_cols=101  Identities=16%  Similarity=0.099  Sum_probs=66.7

Q ss_pred             HHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHH
Q 004369          219 LYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQV  298 (758)
Q Consensus       219 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  298 (758)
                      .+..+|++++|.++.+.+.  +...|..+...+.+.|+++.|.+.|.++..         |..+...+...++.+...++
T Consensus       661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~  729 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL  729 (814)
T ss_dssp             HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence            3456788888888877663  456888888888888888888888888753         44444444556666655555


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcc
Q 004369          299 HSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDG  336 (758)
Q Consensus       299 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  336 (758)
                      -......|      -++.-..+|.+.|++++|.+++.+
T Consensus       730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence            55444443      123344456667777777766544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.17  E-value=0.045  Score=55.14  Aligned_cols=132  Identities=10%  Similarity=0.032  Sum_probs=91.7

Q ss_pred             CCCCHHHHHHHHHHHhc-----cccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHH----HcC-------CHHHHHHH
Q 004369          485 VRPNQVTFVGALAACSN-----AGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFV----RLG-------CIEEAFDF  547 (758)
Q Consensus       485 ~~p~~~t~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~----~~g-------~~~~A~~~  547 (758)
                      .+.|...|...+.+...     .....+|..+|+++.+   +.|+ ...|..+..+|.    ..+       .+.+|.+.
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a  266 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN  266 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence            45556667776665432     3346889999999976   3566 344443333332    111       11223332


Q ss_pred             HHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          548 IKKMDFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       548 ~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      ...+...| +..+|..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|...+++....
T Consensus       267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            22333334 7788888888788889999999999999999975 678899999999999999999999988764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.17  E-value=0.023  Score=45.02  Aligned_cols=76  Identities=12%  Similarity=0.060  Sum_probs=58.5

Q ss_pred             CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369          522 KPVMDHYMCLIDMFVRLGC---IEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM  596 (758)
Q Consensus       522 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  596 (758)
                      +++...+..+..++...++   .++|..++++. ...| +...+..+...+.+.|++++|...++++++.+|++ .....
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~   81 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVT   81 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHH
Confidence            3456777788888765554   68899999888 6667 56778888888999999999999999999999883 33444


Q ss_pred             HH
Q 004369          597 LL  598 (758)
Q Consensus       597 l~  598 (758)
                      +.
T Consensus        82 i~   83 (93)
T 3bee_A           82 II   83 (93)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.09  E-value=0.038  Score=44.81  Aligned_cols=74  Identities=9%  Similarity=0.122  Sum_probs=57.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHc-----C----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369          524 VMDHYMCLIDMFVRLGCIEEAFDFIKKM-----D----FEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESY  594 (758)
Q Consensus       524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  594 (758)
                      +..-+-.|...+.+.|+++.|...++.+     +    -.+...++..|..++.+.|+++.|...++++++++|+++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            3444556777777888888887777765     1    112466789999999999999999999999999999987765


Q ss_pred             HHH
Q 004369          595 AML  597 (758)
Q Consensus       595 ~~l  597 (758)
                      ..+
T Consensus        84 ~n~   86 (104)
T 2v5f_A           84 GNL   86 (104)
T ss_dssp             HHH
T ss_pred             hhH
Confidence            555

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.97  E-value=0.051  Score=62.82  Aligned_cols=152  Identities=15%  Similarity=0.102  Sum_probs=84.9

Q ss_pred             hcCCHHHHHH-HHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 004369          435 KCGRIERASR-VFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFE  513 (758)
Q Consensus       435 ~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  513 (758)
                      ..+++++|.+ ++..+...  .....++..+.+.|..++|+++.+.-.        .-    .......|++++|.++.+
T Consensus       611 ~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~~----f~~~l~~~~~~~A~~~~~  676 (814)
T 3mkq_A          611 LRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISPDQD--------QK----FELALKVGQLTLARDLLT  676 (814)
T ss_dssp             HTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCCCHH--------HH----HHHHHHHTCHHHHHHHHT
T ss_pred             HhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCCCcc--------hh----eehhhhcCCHHHHHHHHH
Confidence            4567777776 55433301  122566666777777777776553211        11    122345678888877654


Q ss_pred             HhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC----------CCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369          514 MMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDF----------EPNEVIWSVFIAGCRRHGNMELGFYAAEQL  583 (758)
Q Consensus       514 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  583 (758)
                      .+       .+...|..|.+++.+.|+++.|.+.|.+++-          .-+...+..+.......|+++.|..++.+.
T Consensus       677 ~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~  749 (814)
T 3mkq_A          677 DE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA  749 (814)
T ss_dssp             TC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc
Confidence            33       3456788888888888888888888887631          112222233334444444444444443332


Q ss_pred             hccCCCCchhHHHHHHHhhhCCCchhHHHHHH
Q 004369          584 LKLKPKDCESYAMLLDIFVSAGRWEDVAVVKN  615 (758)
Q Consensus       584 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~  615 (758)
                              .-+....++|.+.++|++|..+-+
T Consensus       750 --------g~~~~a~~~~~~~~~~~~A~~lA~  773 (814)
T 3mkq_A          750 --------GDIQGAKDLLIKSQRFSEAAFLGS  773 (814)
T ss_dssp             --------TCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --------CCHHHHHHHHHHcCChHHHHHHHH
Confidence                    233445556666677777666544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.94  E-value=0.038  Score=45.91  Aligned_cols=65  Identities=11%  Similarity=-0.095  Sum_probs=34.8

Q ss_pred             CCHHHHHHHHHHHHHcCChhH---HHHHHHHHhccC-C-CCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          555 PNEVIWSVFIAGCRRHGNMEL---GFYAAEQLLKLK-P-KDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       555 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      |+..+--.+.+++.+.++...   ++.+++.+++.+ | ........|+-++.+.|++++|.+..+.+.+
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            444444445555555544333   555555555554 3 2344555566666666666666666665554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.65  E-value=0.035  Score=48.00  Aligned_cols=91  Identities=11%  Similarity=0.057  Sum_probs=60.3

Q ss_pred             cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHc-CCC-C--CHHHHHHHHHHHHHcCChhHH
Q 004369          504 MVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG---CIEEAFDFIKKM-DFE-P--NEVIWSVFIAGCRRHGNMELG  576 (758)
Q Consensus       504 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a  576 (758)
                      .+..+.+.|.+..+. + .++..+.-.+..++.+..   ++++++.++++. ... |  +...+-.|.-+|.+.|++++|
T Consensus        13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence            344455555544431 2 255566666666666666   455666666665 222 4  245566788888999999999


Q ss_pred             HHHHHHHhccCCCCchhHHH
Q 004369          577 FYAAEQLLKLKPKDCESYAM  596 (758)
Q Consensus       577 ~~~~~~~~~~~p~~~~~~~~  596 (758)
                      .+.++.+++.+|++..+...
T Consensus        91 ~~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           91 LKYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             HHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHH
Confidence            99999999999998655444

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.52  E-value=0.0034  Score=64.46  Aligned_cols=432  Identities=11%  Similarity=0.055  Sum_probs=239.9

Q ss_pred             hhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccc
Q 004369          109 FFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSL  188 (758)
Q Consensus       109 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  188 (758)
                      +.+|..|..++.+.|++.+|++-|=+  ..|+..|..+|....+.|.+++-+..+...++..-  ++..=+.++-+|++.
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~  129 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKT  129 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTS
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhh
Confidence            45677788888888888888765533  34666788888888888888888888776655433  334445677788887


Q ss_pred             CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC------------------------CCcchH
Q 004369          189 ESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE------------------------KNVMSW  244 (758)
Q Consensus       189 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~------------------------~~~~~~  244 (758)
                      +++.+-.++..       .|+..-.....+-+...|.++.|.-+|..+..                        .++.+|
T Consensus       130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW  202 (624)
T 3lvg_A          130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW  202 (624)
T ss_dssp             CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred             CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence            77654433221       34544445566666777778877777776652                        467789


Q ss_pred             HHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 004369          245 TTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKC  324 (758)
Q Consensus       245 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~  324 (758)
                      -.+-.+|...+.+.-|.-.--.+.-.   ||.  ...++.-|-..|.+++-..+++..+.. -.....+++-|.-.|+|-
T Consensus       203 KeV~~ACvd~~EfrLAqicGLniIvh---ade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY  276 (624)
T 3lvg_A          203 KEVCFACVDGKEFRLAQMCGLHIVVH---ADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF  276 (624)
T ss_dssp             HHHTHHHHHSCTTTTTTHHHHHHHCC---SSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHhCchHHHHHHHhcchhccc---HHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence            99999999999888776665554422   221  223455577778888777777766522 145678888898889886


Q ss_pred             CCHHHHHHHHccCCC-----------CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHH
Q 004369          325 GLVDEAQKLFDGMSH-----------VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSS  393 (758)
Q Consensus       325 g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~  393 (758)
                       +.++..+.++....           .....|.-++-.|.+           ...++.|...   |.+.  .|+...-..
T Consensus       277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~-----------ydE~DnA~lt---Mi~h--~~~Aw~h~~  339 (624)
T 3lvg_A          277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK-----------YEEYDNAIIT---MMNH--PTDAWKEGQ  339 (624)
T ss_dssp             -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHH-----------HTCHHHHHHT---TTSC--HHHHCCGGG
T ss_pred             -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhc-----------chhHHHHHHH---HHhC--ChhhccHHH
Confidence             45555555554322           123356666666666           5555554432   2211  011111111


Q ss_pred             HHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhH-------------HhhhHHhcCCHHHHHHHHHhcCCCChhHHH-H
Q 004369          394 ILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTA-------------LVNMYKKCGRIERASRVFVEMSTRTLISWT-S  459 (758)
Q Consensus       394 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~-------------Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~-~  459 (758)
                      ......+.++.+.--+....-++.  .|  ...+-             .++++.|.|++.-....+......|...-| +
T Consensus       340 Fkdii~KVaN~EiyYKAi~FYL~e--~P--~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeA  415 (624)
T 3lvg_A          340 FKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNES  415 (624)
T ss_dssp             GTTTGGGCSCSHHHHHHHHHHTTS--CC--TTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHH
T ss_pred             HHHHHHHcchHHHHHHHHHHHHHh--Ch--HHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHH
Confidence            111112222222211111111111  11  11122             233444445544444444444444443333 2


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC
Q 004369          460 MITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG  539 (758)
Q Consensus       460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  539 (758)
                      +-..|....+++                   +...-+.+|-+-..+.-|.++    .+ +   +-.+.-..-...|.+.+
T Consensus       416 ln~L~IEEEDy~-------------------~LR~SId~ydNFD~i~LA~rL----Ek-H---eL~eFRrIAA~LYkkn~  468 (624)
T 3lvg_A          416 LNNLFITEEDYQ-------------------ALRTSIDAYDNFDNISLAQRL----EK-H---ELIEFRRIAAYLFKGNN  468 (624)
T ss_dssp             HHHHHHHTTCCH-------------------HHHHTTSSCCCSCTTHHHHHH----HT-C---SSHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhhhhHH-------------------HHHHHHHHhccccHHHHHHHH----hh-C---chHHHHHHHHHHHHhcc
Confidence            333344444332                   222223333333333333322    22 1   22333444556788889


Q ss_pred             CHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369          540 CIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV  613 (758)
Q Consensus       540 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  613 (758)
                      +++++.++.++=+.-.|      .+...+..|+.+.++++++-.++.+-.  +.+....-.|...=+.+-+.++
T Consensus       469 rw~qsi~l~KkDklykD------AietAa~S~~~elaeeLL~yFv~~g~~--EcF~a~LytCYdLlrpDvVlEl  534 (624)
T 3lvg_A          469 RWKQSVELCKKDSLYKD------AMQYASESKDTELAEELLQWFLQEEKR--ECFGACLFTCYDLLRPDVVLET  534 (624)
T ss_dssp             HHHHHSSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHCST--HHHHHHHHHTSSSSSCHHHHHH
T ss_pred             cHHHHHHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHcCch--HHHHHHHHHHhhccChHHHHHH
Confidence            99998887665432223      334556778888888888887776543  5566666666666666655543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.35  E-value=0.29  Score=41.32  Aligned_cols=91  Identities=11%  Similarity=-0.016  Sum_probs=57.6

Q ss_pred             CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHhccCCC-CchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCcee
Q 004369          554 EPNEVIWSVFIAGCRRHGN---MELGFYAAEQLLKLKPK-DCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWS  629 (758)
Q Consensus       554 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s  629 (758)
                      .|+..+--.+.+++.+..+   ..++..+++.++...|. .......|+-+|.+.|++++|+++.+.+.+          
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~----------  105 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE----------  105 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence            3555555556666666553   44677777777776663 445566677777888888888887777765          


Q ss_pred             EEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcc
Q 004369          630 WIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYK  670 (758)
Q Consensus       630 ~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~  670 (758)
                                      ..|...+.......+.++|.+.|.+
T Consensus       106 ----------------~eP~n~QA~~Lk~~Ie~~i~kdGli  130 (144)
T 1y8m_A          106 ----------------HERNNKQVGALKSMVEDKIQKETLK  130 (144)
T ss_dssp             ----------------TCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred             ----------------cCCCcHHHHHHHHHHHHHHHHhchh
Confidence                            3445555444444555667666654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.93  E-value=0.48  Score=41.99  Aligned_cols=127  Identities=12%  Similarity=0.060  Sum_probs=79.4

Q ss_pred             HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 004369          433 YKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYF  512 (758)
Q Consensus       433 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  512 (758)
                      -..+|+++.|.++.+.+  .+...|..|.......|+.+-|.+.|.+...         |..+.--|.-.|+.+.-.++-
T Consensus        15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla   83 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ   83 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence            34678888888887766  4567888888888888888888888887643         223333344566666555444


Q ss_pred             HHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369          513 EMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQL  583 (758)
Q Consensus       513 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  583 (758)
                      +....+ |      -++.-...+.-.|+++++.+++.+.+.-|....      ....+|-.+.|.++.+.+
T Consensus        84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence            433331 2      133444455667888888888887754333221      123366667777766554

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=94.76  E-value=0.00051  Score=70.30  Aligned_cols=262  Identities=13%  Similarity=0.121  Sum_probs=171.2

Q ss_pred             CChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHc
Q 004369          208 DDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCG  287 (758)
Q Consensus       208 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~  287 (758)
                      ..+.+|+.|..++.+.|.+.+|.+-|-  ...|+..|..+|....+.|.+++-+..+.-.++..-  +...=+.++-+++
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA  127 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA  127 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence            345677888888888888877776653  335667788888888888888888877765555422  2333446777777


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCC
Q 004369          288 TMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHN  367 (758)
Q Consensus       288 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g  367 (758)
                      +.+++.+-+++..       .||..-...+.+-+...|.++.|.-+|..+.+     |.-|...+++           .|
T Consensus       128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~-----------L~  184 (624)
T 3lvg_A          128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVH-----------LG  184 (624)
T ss_dssp             TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSS-----------CS
T ss_pred             hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHH-----------HH
Confidence            7777665444332       45555556677777777888877777776654     5555555666           66


Q ss_pred             ChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHH
Q 004369          368 GGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFV  447 (758)
Q Consensus       368 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~  447 (758)
                      ++..|.+.-++      .-+..||-.+-.+|...+.+..|...--.++-..     .-...|+..|-+.|.+++-..+++
T Consensus       185 ~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlE  253 (624)
T 3lvg_A          185 EYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLE  253 (624)
T ss_dssp             GGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHH
T ss_pred             HHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHH
Confidence            66666543222      3366788888899998888877655433333211     122357888999999999888888


Q ss_pred             hcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 004369          448 EMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEM  514 (758)
Q Consensus       448 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~  514 (758)
                      .-.   ....-.|+-|.-.|++.. +++-++.++....   +.|   .--++++|.+...|.++.-++..
T Consensus       254 aglglErAHmGmFTELaILYsKY~-PeKlmEHlklf~s---riN---ipKviracE~ahLW~ElvfLY~~  316 (624)
T 3lvg_A          254 AALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYDK  316 (624)
T ss_dssp             HHTTSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSS---SSC---CTTTHHHHTTTTCHHHHHHHHHH
T ss_pred             HHhCCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHH---hcc---HHHHHHHHHHHhhHHHHHHHHhc
Confidence            754   457778888888888763 4454444433222   111   12356778777777777666553

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.46  E-value=2.4  Score=37.46  Aligned_cols=104  Identities=13%  Similarity=0.175  Sum_probs=72.6

Q ss_pred             HHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHH
Q 004369          219 LYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQV  298 (758)
Q Consensus       219 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  298 (758)
                      ...++|+++.|.++.+.+  .+...|..|.....+.|+++-|.+.|.+...         +..+.-.+...|+.+.-..+
T Consensus        14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence            445778888888887766  3566899998888889999999888888653         44444445556666666655


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 004369          299 HSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH  339 (758)
Q Consensus       299 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  339 (758)
                      -......|      -+|.-...+.-.|+++++.++|.+...
T Consensus        83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r  117 (177)
T 3mkq_B           83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS  117 (177)
T ss_dssp             HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred             HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence            55555444      124445556677899999888877654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.41  E-value=0.56  Score=37.67  Aligned_cols=64  Identities=9%  Similarity=-0.085  Sum_probs=54.5

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHhccC-------CCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK-------PKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +..-.-.|...+...|+++.|...++++++..       +..+..+..|+.+|.+.|++++|....+...+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            34456678899999999999999999998753       34466899999999999999999999999876

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.20  E-value=0.32  Score=40.49  Aligned_cols=64  Identities=13%  Similarity=-0.016  Sum_probs=30.4

Q ss_pred             CHHHHHHHHHHHHHcCC---hhHHHHHHHHHhccCCC-CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          556 NEVIWSVFIAGCRRHGN---MELGFYAAEQLLKLKPK-DCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       556 ~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +..+--.+.+++.+..+   ..+|+.+++.+++.+|. .......|+-++.+.|++++|.+..+.+.+
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            33333334444444332   23455555555554442 234444555555555555555555555543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.99  E-value=1.1  Score=37.06  Aligned_cols=74  Identities=11%  Similarity=0.085  Sum_probs=48.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHH---HHHHHHHc-CCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHH
Q 004369          523 PVMDHYMCLIDMFVRLGCIEE---AFDFIKKM-DFE-P--NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYA  595 (758)
Q Consensus       523 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  595 (758)
                      |+..+--.+..++.+..+..+   ++.+++.. ... |  .....-.|.-++.+.|+++.|.+.++.+++.+|+|..+..
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            444444455556666555444   55555555 222 3  2233456777889999999999999999999998865544


Q ss_pred             H
Q 004369          596 M  596 (758)
Q Consensus       596 ~  596 (758)
                      .
T Consensus       113 L  113 (126)
T 1nzn_A          113 L  113 (126)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=92.94  E-value=13  Score=40.68  Aligned_cols=123  Identities=11%  Similarity=0.030  Sum_probs=72.9

Q ss_pred             CCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004369          468 SLSHQALQLFEDMLLAG-VRPNQV--TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA  544 (758)
Q Consensus       468 g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A  544 (758)
                      .+.+.|..+|....... +.+...  ....+.......+...++...+......   .++.....-.+....+.|+++.|
T Consensus       228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a  304 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL  304 (618)
T ss_dssp             HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence            37899999998887543 322221  2222333344455345666666654432   23333333344445578999999


Q ss_pred             HHHHHHcCCCC-CHHHH-HHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369          545 FDFIKKMDFEP-NEVIW-SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML  597 (758)
Q Consensus       545 ~~~~~~m~~~p-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  597 (758)
                      ...|+.|+..+ +..-| -=+..+....|+.++|..+++++.+  +.  ..|..|
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~--~fYg~l  355 (618)
T 1qsa_A          305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QR--GFYPMV  355 (618)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SC--SHHHHH
T ss_pred             HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--ChHHHH
Confidence            99999995443 22222 2244566778999999999999875  32  455544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.83  E-value=1.1  Score=49.91  Aligned_cols=54  Identities=17%  Similarity=0.140  Sum_probs=49.9

Q ss_pred             HHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369          565 AGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTR  618 (758)
Q Consensus       565 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  618 (758)
                      .-|...|+++.|+.++++++..-|.+-.+|..|+.+|...|+|+.|.-.++.+.
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            345678999999999999999999999999999999999999999999999885

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.40  E-value=2  Score=36.66  Aligned_cols=38  Identities=13%  Similarity=0.369  Sum_probs=28.0

Q ss_pred             CCCChhHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCC
Q 004369          450 STRTLISWTSMITGFANHSLS------HQALQLFEDMLLAGVRPN  488 (758)
Q Consensus       450 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~  488 (758)
                      ...|..+|-..+.-..+.|++      ++..++|++.... ++|+
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~   52 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD   52 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence            356777888888888777887      7777888877764 5665

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=92.07  E-value=0.2  Score=48.36  Aligned_cols=82  Identities=15%  Similarity=0.113  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhhhhcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHc-CCCCC--HHHHHHHHHHHHH-cCC
Q 004369          505 VYEALGYFEMMQKEYKIKPV---MDHYMCLIDMFVRL-----GCIEEAFDFIKKM-DFEPN--EVIWSVFIAGCRR-HGN  572 (758)
Q Consensus       505 ~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~-~g~  572 (758)
                      ..+|...++++.+   +.|+   -..|..|...|.+.     |+.++|.+.|++. .+.|+  ..++..+...++. .|+
T Consensus       179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            3444444444443   3454   34566666666663     7777777777776 55552  4555566666655 377


Q ss_pred             hhHHHHHHHHHhccCCC
Q 004369          573 MELGFYAAEQLLKLKPK  589 (758)
Q Consensus       573 ~~~a~~~~~~~~~~~p~  589 (758)
                      .+++.+.++++++..|.
T Consensus       256 ~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          256 RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            77777777777776665

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=89.92  E-value=7.7  Score=32.34  Aligned_cols=85  Identities=12%  Similarity=0.019  Sum_probs=51.2

Q ss_pred             HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 004369          434 KKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFE  513 (758)
Q Consensus       434 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  513 (758)
                      .+||++......+-.+.. +....+.-+..+...|+-++-.+++.++.. +.+|++.....+..||.+.|+..++.+++.
T Consensus        72 s~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~  149 (172)
T 1wy6_A           72 DKCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLI  149 (172)
T ss_dssp             GGCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence            356666666665555432 223344455666667777777777666433 245666666667777777777777777777


Q ss_pred             HhhhhcCC
Q 004369          514 MMQKEYKI  521 (758)
Q Consensus       514 ~~~~~~~~  521 (758)
                      ++.++ |+
T Consensus       150 ~AC~k-G~  156 (172)
T 1wy6_A          150 EACKK-GE  156 (172)
T ss_dssp             HHHHT-TC
T ss_pred             HHHHh-hh
Confidence            76663 54

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=89.45  E-value=2.2  Score=36.40  Aligned_cols=105  Identities=10%  Similarity=0.061  Sum_probs=71.9

Q ss_pred             CHHHHHHHHHHHhccccH------HHHHHHHHHhhhhcCCCCCHH-HHHHHHH------HHHHcCCHHHHHHHHHHc---
Q 004369          488 NQVTFVGALAACSNAGMV------YEALGYFEMMQKEYKIKPVMD-HYMCLID------MFVRLGCIEEAFDFIKKM---  551 (758)
Q Consensus       488 ~~~t~~~ll~a~~~~g~~------~~a~~~~~~~~~~~~~~p~~~-~~~~li~------~~~~~g~~~~A~~~~~~m---  551 (758)
                      |..+|-..+.-..+.|+.      ++.+++|+++..  .++|+.. .|...|.      .+...++.++|.++|+.+   
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            355666666666666777      788888888876  5666531 1111111      123447888899999887   


Q ss_pred             CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHH
Q 004369          552 DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYA  595 (758)
Q Consensus       552 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  595 (758)
                      .-+- ..+|-....--.++|+++.|.+++.+++.+.|.+.....
T Consensus        90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            2122 777887777778899999999999999999887654443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=87.68  E-value=1.1  Score=38.91  Aligned_cols=125  Identities=10%  Similarity=0.049  Sum_probs=65.2

Q ss_pred             cCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHc--
Q 004369          483 AGVRPNQV--TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM-------DHYMCLIDMFVRLGCIEEAFDFIKKM--  551 (758)
Q Consensus       483 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m--  551 (758)
                      .|+.|...  ++..-+..+...|.++.|+-+.+.+....+.+|+.       .++..+.+++...|++..|...|++.  
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            45556533  34444566677778888777776655433333432       34566677788888888888777764  


Q ss_pred             --CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          552 --DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       552 --~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                        ..-| +..+..++.    ......       .-..+ +.+.+.-..++.+|.+.|++++|..+.+.+..
T Consensus        92 ~~k~l~k~~s~~~~~~----~~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~  150 (167)
T 3ffl_A           92 QKKALSKTSKVRPSTG----NSASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS  150 (167)
T ss_dssp             HHHCC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred             HHHHHhcCCCcccccc----ccCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence              1111 111111110    000000       00111 23446677899999999999999999887643

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=87.17  E-value=24  Score=34.74  Aligned_cols=135  Identities=14%  Similarity=0.143  Sum_probs=86.3

Q ss_pred             HHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHH----HHHHHcCCCCChhhHHHHHHHhc
Q 004369          111 VMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVF----LDMLEAGNYPTNVTLGTALTACS  186 (758)
Q Consensus       111 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~  186 (758)
                      .+.++..-|.+.+++++|.+++-.           -...+.++|+...|-++-    +-..+.++++|..+...++..+.
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~  105 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR  105 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            455667778889999999987532           233456677777666655    44556788899888888888777


Q ss_pred             ccCChH-----HHHHHHHHHHHhC--CCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCC
Q 004369          187 SLESIR-----LGKQIHAYVVKYQ--TEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGE  256 (758)
Q Consensus       187 ~~~~~~-----~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~  256 (758)
                      ....-+     ...+...+-.+.|  ..-|+.....+...|.+.+++.+|+.-|-.-..+.+..+..++.-+.+.+.
T Consensus       106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~  182 (336)
T 3lpz_A          106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE  182 (336)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred             hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            665322     2223333444444  345677788888889999999999888843222223556555544444443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=85.95  E-value=27  Score=34.11  Aligned_cols=133  Identities=10%  Similarity=0.092  Sum_probs=84.7

Q ss_pred             HHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHH----HHHHHHcCCCCChhhHHHHHHHhc
Q 004369          111 VMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHV----FLDMLEAGNYPTNVTLGTALTACS  186 (758)
Q Consensus       111 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~  186 (758)
                      .+.++..-|.+.+++++|.+++..           -...+.++|+...|-++    .+-..+.++.++......++..+.
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~  103 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA  103 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            456677788889999999887533           23345667777766665    444456688888888887777765


Q ss_pred             ccCC-----hHHHHHHHHHHHHhCC--CCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhC
Q 004369          187 SLES-----IRLGKQIHAYVVKYQT--EDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGEN  254 (758)
Q Consensus       187 ~~~~-----~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~  254 (758)
                      ....     .....+...+-.+.|-  .-|+.....+...|.+.|++.+|+.-|-.-...|...+..++.-+.+.
T Consensus       104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~  178 (312)
T 2wpv_A          104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ  178 (312)
T ss_dssp             TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence            5331     2223333444444432  246778888889999999999998877532222455555555444443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=85.21  E-value=31  Score=34.04  Aligned_cols=110  Identities=15%  Similarity=0.168  Sum_probs=74.2

Q ss_pred             HHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHH----HHHHHCCCCCChhhHHHHHHHHcccC
Q 004369          215 SLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFF----SKMLSEGIQPNEFTLTSISSVCGTML  290 (758)
Q Consensus       215 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~~~  290 (758)
                      ++..=|.+.+++++|.+++-.-           ...+.+.|+...|-++-    +-+.+.++++|..+...++..+....
T Consensus        40 Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~  108 (336)
T 3lpz_A           40 LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ  108 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence            3445588889999998876432           33466778776666655    44556788899888888888777665


Q ss_pred             ChH-HHHHHHH----HHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHc
Q 004369          291 SLR-VGAQVHS----LGIKLG--YASNLRVRNSIMYLYLKCGLVDEAQKLFD  335 (758)
Q Consensus       291 ~~~-~a~~~~~----~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~  335 (758)
                      .-+ .-..+..    +-.+.|  -.-|......+...|.+.+++.+|+..|-
T Consensus       109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i  160 (336)
T 3lpz_A          109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV  160 (336)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            422 1122333    333444  33467788889999999999999998884

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=85.21  E-value=11  Score=29.34  Aligned_cols=87  Identities=15%  Similarity=0.116  Sum_probs=58.0

Q ss_pred             chHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004369          403 ALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLL  482 (758)
Q Consensus       403 ~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  482 (758)
                      .-++|..|-+.+...+.  ...+--.-+..+...|++++|..+.+....||+..|-+|-.  .+.|..+++..-+.++..
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   97 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR   97 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            34566666666655543  33332333445678899999999999999999999988754  466777777777777766


Q ss_pred             cCCCCCHHHHHH
Q 004369          483 AGVRPNQVTFVG  494 (758)
Q Consensus       483 ~g~~p~~~t~~~  494 (758)
                      +| .|....|..
T Consensus        98 sg-~p~~q~Fa~  108 (116)
T 2p58_C           98 SQ-DPRIQTFVN  108 (116)
T ss_dssp             CC-CHHHHHHHH
T ss_pred             CC-CHHHHHHHH
Confidence            65 444444443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=84.89  E-value=5.1  Score=31.10  Aligned_cols=88  Identities=13%  Similarity=0.093  Sum_probs=65.4

Q ss_pred             cCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 004369           86 NRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLD  165 (758)
Q Consensus        86 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  165 (758)
                      .....++|..|-+.+...+.  ...+.-.-+..+...|++++|..+.+.+..||..+|-+|-.+  +.|..+++..-+.+
T Consensus        18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~   93 (115)
T 2uwj_G           18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAG   93 (115)
T ss_dssp             TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence            34467888889888887663  444444445567889999999999999999999999888764  77888888777777


Q ss_pred             HHHcCCCCChhhH
Q 004369          166 MLEAGNYPTNVTL  178 (758)
Q Consensus       166 m~~~g~~p~~~t~  178 (758)
                      +...| .|....|
T Consensus        94 la~sg-~p~~q~F  105 (115)
T 2uwj_G           94 LGGSS-DPALADF  105 (115)
T ss_dssp             HHTCS-SHHHHHH
T ss_pred             HHhCC-CHHHHHH
Confidence            77665 3444444

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=84.42  E-value=12  Score=31.64  Aligned_cols=73  Identities=5%  Similarity=0.090  Sum_probs=48.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHH---HHHHHHHHc-CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369          522 KPVMDHYMCLIDMFVRLGCIE---EAFDFIKKM-DFEP--NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESY  594 (758)
Q Consensus       522 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  594 (758)
                      .|+..+--.+..++.+..+.+   +++.+++.. ...|  .....-.|.-++.+.|++++|.+..+.+++.+|+|..+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            355555555566666666443   455555555 2233  233455677789999999999999999999999985443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=84.32  E-value=10  Score=29.40  Aligned_cols=87  Identities=14%  Similarity=0.094  Sum_probs=59.5

Q ss_pred             chHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004369          403 ALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLL  482 (758)
Q Consensus       403 ~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  482 (758)
                      .-++|..|-+.+...+.  ...+--.-+..+...|++++|..+.+....||+..|-+|-.  .+.|..+++..-+.++..
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   96 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG   96 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            34566666666655543  33333333445678899999999999999999999988754  567888888888877777


Q ss_pred             cCCCCCHHHHHH
Q 004369          483 AGVRPNQVTFVG  494 (758)
Q Consensus       483 ~g~~p~~~t~~~  494 (758)
                      +| .|....|..
T Consensus        97 sg-~p~~q~Fa~  107 (115)
T 2uwj_G           97 SS-DPALADFAA  107 (115)
T ss_dssp             CS-SHHHHHHHH
T ss_pred             CC-CHHHHHHHH
Confidence            65 454444443

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=83.80  E-value=12  Score=29.10  Aligned_cols=88  Identities=13%  Similarity=0.075  Sum_probs=64.0

Q ss_pred             cCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 004369           86 NRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLD  165 (758)
Q Consensus        86 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  165 (758)
                      .....++|..|-+.+...+.  ...+.-.-+..+...|++++|..+.+.+.-||..+|-+|-.+  +.|..+++..-+.+
T Consensus        19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~   94 (116)
T 2p58_C           19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR   94 (116)
T ss_dssp             TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence            34467889999888887663  444444445567889999999999999999999999888764  56777777776767


Q ss_pred             HHHcCCCCChhhH
Q 004369          166 MLEAGNYPTNVTL  178 (758)
Q Consensus       166 m~~~g~~p~~~t~  178 (758)
                      +...| .|....|
T Consensus        95 la~sg-~p~~q~F  106 (116)
T 2p58_C           95 LARSQ-DPRIQTF  106 (116)
T ss_dssp             HTTCC-CHHHHHH
T ss_pred             HHhCC-CHHHHHH
Confidence            76654 3333333

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=83.30  E-value=11  Score=31.28  Aligned_cols=71  Identities=6%  Similarity=0.111  Sum_probs=45.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHH---HHHHHHHHc-CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh
Q 004369          523 PVMDHYMCLIDMFVRLGCIE---EAFDFIKKM-DFEP--NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES  593 (758)
Q Consensus       523 p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  593 (758)
                      |+..+--.+..++.+....+   +++.++++. ...|  ....+-.|.-|+.+.|+++.|.+..+.+++.+|+|..+
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            44444444555555555432   455555554 2223  23446667778888999999999999999999987544

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=81.85  E-value=4.6  Score=31.59  Aligned_cols=63  Identities=16%  Similarity=0.204  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 004369          469 LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLID  533 (758)
Q Consensus       469 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~  533 (758)
                      +.-+...-++.+....+-|+.....+.|.||.+.+++..|.++|+.++.+.  .+...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence            455666667777777889999999999999999999999999999987643  344556777765

>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A

Probab=80.81  E-value=44  Score=36.61  Aligned_cols=74  Identities=9%  Similarity=-0.045  Sum_probs=40.5

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHh---cCCHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKK---CGRIERA  442 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~---~g~~~~A  442 (758)
                      .|+++.|++.+...    ...|.+.+...+.-+.-.+-   ...++..-  .+ .| ..-+..||..|.+   ..+..+|
T Consensus       307 tgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~~td~~~A  375 (661)
T 2qx5_A          307 SGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFRYSDPRVA  375 (661)
T ss_dssp             TTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTTCHHHH
T ss_pred             HhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhhcCCHHHH
Confidence            99999999988754    35677777777766544432   11111110  00 11 2225567777765   5778888


Q ss_pred             HHHHHhcC
Q 004369          443 SRVFVEMS  450 (758)
Q Consensus       443 ~~~~~~~~  450 (758)
                      .+.|--+.
T Consensus       376 l~Y~~li~  383 (661)
T 2qx5_A          376 VEYLVLIT  383 (661)
T ss_dssp             HHHHHGGG
T ss_pred             HHHHHHHh
Confidence            88776654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=80.80  E-value=8.9  Score=33.34  Aligned_cols=27  Identities=11%  Similarity=0.155  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHcC
Q 004369          526 DHYMCLIDMFVRLGCIEEAFDFIKKMD  552 (758)
Q Consensus       526 ~~~~~li~~~~~~g~~~~A~~~~~~m~  552 (758)
                      +.---+..+|.+.|+.++|+.+++..+
T Consensus       123 Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          123 EVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            333335555666666666666666553

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=80.69  E-value=8.2  Score=43.05  Aligned_cols=53  Identities=19%  Similarity=0.091  Sum_probs=30.7

Q ss_pred             HhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC
Q 004369          499 CSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDF  553 (758)
Q Consensus       499 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  553 (758)
                      |...|+++-|+++-++...  -.+.+-.+|..|...|...|+++.|+-.++.+|.
T Consensus       347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm  399 (754)
T 4gns_B          347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMPR  399 (754)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence            3345666666666666553  1222355666666666666666666666666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	758
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 6e-06
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 18/191 (9%)

Query: 429 LVNMYKKCGRIERASRVF---VEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGV 485
           L  ++   G I  A   F   V +    L ++ ++        +  +A+  +   L    
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 486 RPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYK----IKP-VMDHYMCLIDMFVRLGC 540
                          N   VY   G  ++    Y+    ++P   D Y  L +     G 
Sbjct: 235 NHAV--------VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286

Query: 541 IEEAFDFIKKMDFEPNEVIWSVFIAG--CRRHGNMELGFYAAEQLLKLKPKDCESYAMLL 598
           + EA D              S+       R  GN+E       + L++ P+   +++ L 
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346

Query: 599 DIFVSAGRWED 609
            +    G+ ++
Sbjct: 347 SVLQQQGKLQE 357

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-05
 Identities = 29/179 (16%), Positives = 66/179 (36%), Gaps = 10/179 (5%)

Query: 429 LVNMYKKCGRIERASRVF---VEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGV 485
           L N+ K+    +RA   +   + +S    +   ++   +    L   A+  +   +   +
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI--EL 266

Query: 486 RPNQVTFVGALA-ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA 544
           +P+       LA A    G V EA   +             D    L ++    G IEEA
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTAL--RLCPTHADSLNNLANIKREQGNIEEA 324

Query: 545 FDFIKK-MDFEPNEVIWSVFIAGC-RRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF 601
               +K ++  P        +A   ++ G ++      ++ +++ P   ++Y+ + +  
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	758
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.86
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.45
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.01
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.0
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.96
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.92
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.92
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.9
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.88
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.84
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.77
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.64
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.64
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.58
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.55
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.5
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.39
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.39
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.38
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.38
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.36
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.28
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.25
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.25
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.21
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.2
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.19
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.17
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.11
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.03
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.03
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.02
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.99
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.97
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.69
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.67
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.65
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.58
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.54
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.46
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.44
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.44
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.43
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.4
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.32
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.24
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.98
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.97
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.92
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.87
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.45
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.64
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	91.7
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	91.52
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	91.51
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.95
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	88.62
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.38
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	81.07

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8e-20  Score=191.16  Aligned_cols=369  Identities=11%  Similarity=0.091  Sum_probs=256.9

Q ss_pred             HhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC--C-CcchHHHHHHHHhhCCChhhH
Q 004369          184 ACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE--K-NVMSWTTVIGACGENGEAVQG  260 (758)
Q Consensus       184 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A  260 (758)
                      .+.+.|+++.|.+.+..+++.. +.+..++..+...|.+.|++++|...|++..+  | +..+|..+...|.+.|++++|
T Consensus         8 ~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A   86 (388)
T d1w3ba_           8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccc
Confidence            3445566666666666666543 22345555566666666666666666665543  2 334555566666666666666


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC--
Q 004369          261 LRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMS--  338 (758)
Q Consensus       261 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--  338 (758)
                      +..+.........                                    +..........+...+....+........  
T Consensus        87 ~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (388)
T d1w3ba_          87 IEHYRHALRLKPD------------------------------------FIDGYINLAAALVAAGDMEGAVQAYVSALQY  130 (388)
T ss_dssp             HHHHHHHHHHCTT------------------------------------CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred             ccccccccccccc------------------------------------ccccccccccccccccccccccccccccccc
Confidence            6666665543211                                    11111122222222222222222221111  


Q ss_pred             -CCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHc
Q 004369          339 -HVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKT  417 (758)
Q Consensus       339 -~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~  417 (758)
                       ......+.........           .+....+...+.+..... +-+...+..+...+...++.+.|...+....+.
T Consensus       131 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  198 (388)
T d1w3ba_         131 NPDLYCVRSDLGNLLKA-----------LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL  198 (388)
T ss_dssp             CTTCTHHHHHHHHHHHT-----------TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccc-----------cchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHh
Confidence             1112222222333333           666666666666665532 224556666677778888888888888887775


Q ss_pred             CCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 004369          418 GFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFV  493 (758)
Q Consensus       418 ~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~  493 (758)
                      . +.+...+..+...|...|++++|...|++..   ..+...|..+...+.+.|++++|+..|++..+.  .|+ ..++.
T Consensus       199 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~  275 (388)
T d1w3ba_         199 D-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYC  275 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHH
T ss_pred             C-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence            4 4456788889999999999999999998765   446678888999999999999999999999884  555 66788


Q ss_pred             HHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC
Q 004369          494 GALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHG  571 (758)
Q Consensus       494 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g  571 (758)
                      .+..++...|++++|.+.++....  ..+.+...+..+...+.+.|++++|++.+++. ...| +..+|..+...+...|
T Consensus       276 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  353 (388)
T d1w3ba_         276 NLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            888999999999999999999876  34556788899999999999999999999997 7777 5678999999999999


Q ss_pred             ChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369          572 NMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGR  606 (758)
Q Consensus       572 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  606 (758)
                      ++++|...++++++++|+++.+|..|+++|.+.|+
T Consensus       354 ~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         354 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999988875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1e-18  Score=182.54  Aligned_cols=352  Identities=14%  Similarity=0.098  Sum_probs=261.8

Q ss_pred             HHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 004369          250 ACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDE  329 (758)
Q Consensus       250 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~  329 (758)
                      .+.+.|++++|++.|+++.+.. +-+...+..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++++
T Consensus         8 ~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~   85 (388)
T d1w3ba_           8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence            3445556666666666555432 1123444455555555666666666666665553 4456678888999999999999


Q ss_pred             HHHHHccCCCCC---eeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHH
Q 004369          330 AQKLFDGMSHVN---LVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQ  406 (758)
Q Consensus       330 A~~~~~~m~~~~---~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~  406 (758)
                      |...+......+   ...+.........           .+....+............. ...............+....
T Consensus        86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  153 (388)
T d1w3ba_          86 AIEHYRHALRLKPDFIDGYINLAAALVA-----------AGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEE  153 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------HSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHH
T ss_pred             cccccccccccccccccccccccccccc-----------cccccccccccccccccccc-cccccccccccccccchhhh
Confidence            999998876522   2223333333333           45555555555554443322 33333344445556667777


Q ss_pred             HHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004369          407 GEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLA  483 (758)
Q Consensus       407 a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  483 (758)
                      +........... +.+...+..+...+...|++++|...+++..   +.+...|..+...+...|++++|+..+++....
T Consensus       154 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  232 (388)
T d1w3ba_         154 AKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL  232 (388)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred             hHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence            777776666553 4456788888999999999999999998765   446678999999999999999999999999885


Q ss_pred             CCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCC-CCHHHHH
Q 004369          484 GVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFE-PNEVIWS  561 (758)
Q Consensus       484 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~  561 (758)
                      + ..+...+..+...+.+.|++++|...|+++.+.  .+-+...+..+...|...|++++|++.++.. ... .+...+.
T Consensus       233 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  309 (388)
T d1w3ba_         233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN  309 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             h-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhh
Confidence            3 344667788888999999999999999998762  2334778999999999999999999999988 333 4778899


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      .+...+...|++++|+..+++++++.|+++.++..++.+|...|++++|.+.+++..+
T Consensus       310 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.1e-13  Score=136.91  Aligned_cols=221  Identities=14%  Similarity=0.057  Sum_probs=176.0

Q ss_pred             HHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHH
Q 004369          397 ICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQA  473 (758)
Q Consensus       397 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A  473 (758)
                      .+.+.|++++|...++.+++.. +.+...+..+...|...|++++|...|++..   +.+...|..+...|...|++++|
T Consensus        28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  106 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA  106 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            4556778888888888777753 4456777888888888888888888887754   34667788888888888888888


Q ss_pred             HHHHHHHHHcCCCCCHH----------------HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 004369          474 LQLFEDMLLAGVRPNQV----------------TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR  537 (758)
Q Consensus       474 ~~~~~~m~~~g~~p~~~----------------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~  537 (758)
                      ++.+++....  .|+..                .....+..+...+.++++.+.|..+.+...-.++...+..+...+.+
T Consensus       107 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~  184 (323)
T d1fcha_         107 CEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL  184 (323)
T ss_dssp             HHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             ccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence            8888888763  23211                11112223445577888999998887654445567888999999999


Q ss_pred             cCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHH
Q 004369          538 LGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKN  615 (758)
Q Consensus       538 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~  615 (758)
                      .|++++|+..+++. ...| +..+|..+...+...|++++|...++++++++|+++.++..|+.+|.+.|++++|.+.++
T Consensus       185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  264 (323)
T d1fcha_         185 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL  264 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999997 5556 577899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhC
Q 004369          616 LTREE  620 (758)
Q Consensus       616 ~m~~~  620 (758)
                      +..+.
T Consensus       265 ~al~l  269 (323)
T d1fcha_         265 EALNM  269 (323)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88763

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3e-12  Score=129.42  Aligned_cols=243  Identities=12%  Similarity=0.020  Sum_probs=192.6

Q ss_pred             CCChhHHHHHHHHhHhCCCCC-CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKP-DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASR  444 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~  444 (758)
                      .|++++|+..|++..+.  .| +..++..+..++...|+++.|...+..+++.. +.+...+..+...|...|++++|.+
T Consensus        32 ~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~  108 (323)
T d1fcha_          32 EGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACE  108 (323)
T ss_dssp             TTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccccccc
Confidence            99999999999999986  34 56788888899999999999999999998864 4467888899999999999999999


Q ss_pred             HHHhcCCCCh------------------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccccH
Q 004369          445 VFVEMSTRTL------------------ISWTSMITGFANHSLSHQALQLFEDMLLAGV-RPNQVTFVGALAACSNAGMV  505 (758)
Q Consensus       445 ~~~~~~~~~~------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~  505 (758)
                      .+++....+.                  ......+..+...+...+|.+.|.+..+... .++...+..+...+...|++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  188 (323)
T d1fcha_         109 ILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY  188 (323)
T ss_dssp             HHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCH
T ss_pred             chhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence            9987642110                  1111223344556778899999998877432 23466778888889999999


Q ss_pred             HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369          506 YEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQL  583 (758)
Q Consensus       506 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~  583 (758)
                      ++|...|+.....  .+-+...|..+...|.+.|++++|.+.+++. ...| +..+|..+..+|...|++++|+..++++
T Consensus       189 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  266 (323)
T d1fcha_         189 DKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA  266 (323)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999998763  2234778899999999999999999999987 6667 5778999999999999999999999999


Q ss_pred             hccCCCCchh-----------HHHHHHHhhhCCCchhHHHH
Q 004369          584 LKLKPKDCES-----------YAMLLDIFVSAGRWEDVAVV  613 (758)
Q Consensus       584 ~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~~~  613 (758)
                      ++++|++...           +..+..++...|+++.+...
T Consensus       267 l~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         267 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9998886553           45567777777777665443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3e-09  Score=106.03  Aligned_cols=190  Identities=10%  Similarity=0.118  Sum_probs=104.9

Q ss_pred             HHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 004369          425 VGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHS-LSHQALQLFEDMLLAGVRPN-QVTFVGALAAC  499 (758)
Q Consensus       425 ~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~  499 (758)
                      +++.+...+.+.+..++|++.++++.   +.+...|+.....+...| ++++|+..+++..+.  .|+ ..+|..+...+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHHH
Confidence            44444445555556666666665544   224445555555555544 356666666666553  333 44555555566


Q ss_pred             hccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC-----
Q 004369          500 SNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGN-----  572 (758)
Q Consensus       500 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~-----  572 (758)
                      .+.|++++|+..++.+.+.  -+.+...|..+...+.+.|++++|++.++++ ...| +...|+.+...+...+.     
T Consensus       123 ~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence            6666666666666666542  1223555666666666666666666666665 4444 45556555555444443     


Q ss_pred             -hhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          573 -MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       573 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                       +++|...+.++++++|++...+..++.++...| .+++.+.++...+
T Consensus       201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~  247 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD  247 (315)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence             345666666666666666666666666554433 3555555554443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=4.3e-08  Score=99.11  Aligned_cols=254  Identities=10%  Similarity=-0.060  Sum_probs=189.0

Q ss_pred             CCChhHHHHHHHHhHhCCCCCC----HHHHHHHHHHHhcccchHHHHHHHHHHHHcC----CC-ChHHHHhHHhhhHHhc
Q 004369          366 HNGGTEALSIFSKLNSSGMKPD----LYTFSSILTICSRLVALEQGEQIHALTLKTG----FL-SDVVVGTALVNMYKKC  436 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~----~~-~~~~~~~~Li~~y~~~  436 (758)
                      .|++++|+.++++..+.....+    ...+..+...+...|++++|...+..+.+..    .. .....+..+...|...
T Consensus        25 ~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (366)
T d1hz4a_          25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  104 (366)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            9999999999999887532222    2356667778899999999999998876531    11 1234566777889999


Q ss_pred             CCHHHHHHHHHhcC-------CC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHhc
Q 004369          437 GRIERASRVFVEMS-------TR----TLISWTSMITGFANHSLSHQALQLFEDMLLAGVR----PNQVTFVGALAACSN  501 (758)
Q Consensus       437 g~~~~A~~~~~~~~-------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~a~~~  501 (758)
                      |++..|...+.+..       .+    ....+..+...+...|+++.+...+.+.......    ....++......+..
T Consensus       105 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (366)
T d1hz4a_         105 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA  184 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Confidence            99999998887643       11    1135666778889999999999999998874322    224455666667788


Q ss_pred             cccHHHHHHHHHHhhhhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-----CHHHHHHHHHHHHHc
Q 004369          502 AGMVYEALGYFEMMQKEYKIKPV-----MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-----NEVIWSVFIAGCRRH  570 (758)
Q Consensus       502 ~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~~~~~~  570 (758)
                      .+...++...+...........+     ...+..+...+...|++++|...+++. ...|     ....+..+...+...
T Consensus       185 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  264 (366)
T d1hz4a_         185 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL  264 (366)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence            89999998888776553222111     234666778889999999999999987 2222     234567788899999


Q ss_pred             CChhHHHHHHHHHhc------cCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          571 GNMELGFYAAEQLLK------LKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       571 g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      |++++|...+++++.      ..|.....+..++.+|...|++++|.+.++...+
T Consensus       265 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         265 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999874      3355667899999999999999999999988754

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.2e-08  Score=101.43  Aligned_cols=222  Identities=13%  Similarity=0.116  Sum_probs=172.1

Q ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcC-CHHHHHHHHHhcC---CCChhHHHHHHHHHH
Q 004369          390 TFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCG-RIERASRVFVEMS---TRTLISWTSMITGFA  465 (758)
Q Consensus       390 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~  465 (758)
                      .++.+-..+.+.+..++|.+++..+++.. |.+..+|+.....+.+.| ++++|...+++..   +.+..+|+.+...+.
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence            34444455667788899999999999874 556778888888888876 5999999998865   557789999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCC----
Q 004369          466 NHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGC----  540 (758)
Q Consensus       466 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----  540 (758)
                      ..|++++|++.++++.+.  .|+ ...|..+...+.+.|++++|.+.++.+.+.  -+.+...|+.+..++.+.|.    
T Consensus       124 ~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             hhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchh
Confidence            999999999999999984  554 778999999999999999999999999873  22346778888777777765    


Q ss_pred             --HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC--chhHHHHHHHhhhC--CCchhHHH
Q 004369          541 --IEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD--CESYAMLLDIFVSA--GRWEDVAV  612 (758)
Q Consensus       541 --~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~--g~~~~a~~  612 (758)
                        +++|++.+.++ ...| +...|..+...+.. ...+++...+++++++.|+.  +..+..++.+|...  +..+.+..
T Consensus       200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~  278 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED  278 (315)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence              67899888887 6667 67788888776554 45688999999999988764  44556777777543  44455554


Q ss_pred             HHHHh
Q 004369          613 VKNLT  617 (758)
Q Consensus       613 ~~~~m  617 (758)
                      .+++.
T Consensus       279 ~~~ka  283 (315)
T d2h6fa1         279 ILNKA  283 (315)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=9.2e-09  Score=99.36  Aligned_cols=223  Identities=7%  Similarity=-0.091  Sum_probs=143.6

Q ss_pred             CCChhHHHHHHHHhHhCCC-CC--CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHH
Q 004369          366 HNGGTEALSIFSKLNSSGM-KP--DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERA  442 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A  442 (758)
                      +.+.+.++.-+.+...... .+  ...++..+...+.+.|++++|...+...++.. +.+..+++.+...|.+.|++++|
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A   90 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   90 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHh
Confidence            5566777777777766422 12  22355566678888899999999998888864 45678888899999999999999


Q ss_pred             HHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhh
Q 004369          443 SRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKE  518 (758)
Q Consensus       443 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  518 (758)
                      .+.|++..   +.+..+|..+...|...|++++|++.|++..+.  .|+ ......+..++.+.+..+....+.......
T Consensus        91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (259)
T d1xnfa_          91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  168 (259)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence            99998876   335668888888888999999999999988875  343 333333333445555555555544444331


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369          519 YKIKPVMDHYMCLIDMFVRLGC----IEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE  592 (758)
Q Consensus       519 ~~~~p~~~~~~~li~~~~~~g~----~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  592 (758)
                         .++...++ ++..+.....    .+.+...+... ...|+ ..+|..|...+...|++++|...+++++..+|++..
T Consensus       169 ---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  244 (259)
T d1xnfa_         169 ---DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  244 (259)
T ss_dssp             ---CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             ---chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence               12222222 2222221111    22222222211 22232 346777888888899999999999999999988755


Q ss_pred             hHH
Q 004369          593 SYA  595 (758)
Q Consensus       593 ~~~  595 (758)
                      .|.
T Consensus       245 ~~~  247 (259)
T d1xnfa_         245 EHR  247 (259)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=6e-08  Score=96.22  Aligned_cols=185  Identities=11%  Similarity=0.133  Sum_probs=130.2

Q ss_pred             chHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC---CC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 004369          403 ALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST---RT-LISWTSMITGFANHSLSHQALQLFE  478 (758)
Q Consensus       403 ~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~  478 (758)
                      ..+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+++..   .+ ...|...+....+.|+.++|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            4567777887777655555667777778888888888888888887642   22 2467888888888888888888888


Q ss_pred             HHHHcCCCCCHHHHHHHHH-HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc----CC
Q 004369          479 DMLLAGVRPNQVTFVGALA-ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM----DF  553 (758)
Q Consensus       479 ~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~  553 (758)
                      ++.+.+.. +...|..... -+...|+.+.|..+|+.+.+.+  +.+...|...++.+.+.|++++|..+|++.    +.
T Consensus       159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            88775322 2233333222 2334577888888888887642  334567788888888888888888888876    34


Q ss_pred             CCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369          554 EPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD  590 (758)
Q Consensus       554 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  590 (758)
                      .|+  ...|...+.--..+|+.+.+..+.+++.+..|.+
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            442  3468887777778888888888888887777764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=7.1e-09  Score=100.21  Aligned_cols=211  Identities=12%  Similarity=-0.012  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHHcCC-CC--hHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 004369          405 EQGEQIHALTLKTGF-LS--DVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFE  478 (758)
Q Consensus       405 ~~a~~i~~~~~~~~~-~~--~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~  478 (758)
                      +.+..-+.++..... .+  ...++..+...|.+.|++++|...|++..   +.++.+|+.+..+|.+.|++++|+..|+
T Consensus        16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~   95 (259)
T d1xnfa_          16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD   95 (259)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence            344444445544321 11  24567778899999999999999999865   4578899999999999999999999999


Q ss_pred             HHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC
Q 004369          479 DMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN  556 (758)
Q Consensus       479 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~  556 (758)
                      ++.+.  .|+ ..++..+..++...|++++|...|+...+.  .+.+......+...+.+.+..+.+..+.... ...++
T Consensus        96 ~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (259)
T d1xnfa_          96 SVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE  171 (259)
T ss_dssp             HHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence            99984  555 667888888999999999999999999773  2234444444555566666655555554444 22222


Q ss_pred             HHHHHHHHHHHH----HcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          557 EVIWSVFIAGCR----RHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       557 ~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      ...++. +..+.    ..+..+.+...+.......|....+|..|+.+|...|++++|.+.++.....
T Consensus       172 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         172 QWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             STHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            222222 22221    1122333344444444455666778899999999999999999999998763

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=1.5e-07  Score=94.96  Aligned_cols=285  Identities=11%  Similarity=0.010  Sum_probs=187.5

Q ss_pred             HHHHHhcCCHHHHHHHHccCCC--CC------eeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhC----CCC
Q 004369          318 MYLYLKCGLVDEAQKLFDGMSH--VN------LVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSS----GMK  385 (758)
Q Consensus       318 i~~~~~~g~~~~A~~~~~~m~~--~~------~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~----g~~  385 (758)
                      ...+...|++++|..+|++..+  |+      ...++.+...|..           .|++++|+..|++..+.    +..
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~-----------~g~~~~A~~~~~~a~~~~~~~~~~   87 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-----------KGELTRSLALMQQTEQMARQHDVW   87 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-----------HTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHHHHHhhcch
Confidence            3445566666666666655322  11      1233444455555           77777777777766542    111


Q ss_pred             C-CHHHHHHHHHHHhcccchHHHHHHHHHHHHc----CCC--C-hHHHHhHHhhhHHhcCCHHHHHHHHHhcCC------
Q 004369          386 P-DLYTFSSILTICSRLVALEQGEQIHALTLKT----GFL--S-DVVVGTALVNMYKKCGRIERASRVFVEMST------  451 (758)
Q Consensus       386 p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~--~-~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~------  451 (758)
                      + ...++..+...+...|++..+...+......    +..  + ....+..+...|...|+++.|...+.....      
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~  167 (366)
T d1hz4a_          88 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ  167 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh
Confidence            1 1234455556777888888888887765531    111  1 234566778889999999999998877541      


Q ss_pred             --CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC--CC--HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCC-
Q 004369          452 --RTLISWTSMITGFANHSLSHQALQLFEDMLLAG--VR--PN--QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIK-  522 (758)
Q Consensus       452 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~--p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-  522 (758)
                        .....+..+...+...++..++...+.+.....  ..  +.  ...+..+...+...|++++|...++...+...-. 
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  247 (366)
T d1hz4a_         168 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN  247 (366)
T ss_dssp             GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred             hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccc
Confidence              123456666777888899999999888765521  11  11  2334555667788999999999998876522111 


Q ss_pred             -CCHHHHHHHHHHHHHcCCHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC----
Q 004369          523 -PVMDHYMCLIDMFVRLGCIEEAFDFIKKM-------DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK----  589 (758)
Q Consensus       523 -p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----  589 (758)
                       .....+..+...|...|++++|.+.+++.       +..|+ ..+|..+...+...|++++|...+++++++.+.    
T Consensus       248 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~  327 (366)
T d1hz4a_         248 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI  327 (366)
T ss_dssp             GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcH
Confidence             12455667889999999999999998876       44443 456888899999999999999999999886432    


Q ss_pred             -----CchhHHHHHHHhhhCCCchhHHHH
Q 004369          590 -----DCESYAMLLDIFVSAGRWEDVAVV  613 (758)
Q Consensus       590 -----~~~~~~~l~~~~~~~g~~~~a~~~  613 (758)
                           .......+...+...++.+++.+-
T Consensus       328 ~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         328 SHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence                 122344455566777888877653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=3.8e-09  Score=106.58  Aligned_cols=228  Identities=7%  Similarity=-0.092  Sum_probs=158.7

Q ss_pred             CCChhHHHHHHHHhHhCCCCC-CHHHHHHHHHHHhccc--chHHHHHHHHHHHHcCCCChHHHH-hHHhhhHHhcCCHHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKP-DLYTFSSILTICSRLV--ALEQGEQIHALTLKTGFLSDVVVG-TALVNMYKKCGRIER  441 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~-~~Li~~y~~~g~~~~  441 (758)
                      .|..++|+..+++..+.  .| +...+.....++...+  +.+++...+..+.+... .+...+ ..+...+...|..++
T Consensus        86 ~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1          86 AALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHH
Confidence            44556677777766653  23 3334444444443433  46677777777766542 233333 345567777899999


Q ss_pred             HHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhh
Q 004369          442 ASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKE  518 (758)
Q Consensus       442 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  518 (758)
                      |...++....   .+..+|+.+...+...|++++|...+++..+.  .|+..   .+...+...+..+++...+..... 
T Consensus       163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~-  236 (334)
T d1dcea1         163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL-  236 (334)
T ss_dssp             HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH-
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH-
Confidence            9999988774   35678888889999999988887666554442  22222   222334455666777777777665 


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369          519 YKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM  596 (758)
Q Consensus       519 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  596 (758)
                       ..+++...+..++..+...|+.++|.+.+.+. ...| +..+|..+...+...|++++|...++++++++|.+...|..
T Consensus       237 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~  315 (334)
T d1dcea1         237 -GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  315 (334)
T ss_dssp             -SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             -hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence             33344555667778888889999999999887 6667 56778899999999999999999999999999998888888


Q ss_pred             HHHHhhh
Q 004369          597 LLDIFVS  603 (758)
Q Consensus       597 l~~~~~~  603 (758)
                      |...+.-
T Consensus       316 L~~~~~~  322 (334)
T d1dcea1         316 LRSKFLL  322 (334)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhH
Confidence            8877763

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=3.5e-07  Score=90.52  Aligned_cols=185  Identities=9%  Similarity=-0.002  Sum_probs=145.8

Q ss_pred             HhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHH
Q 004369          434 KKCGRIERASRVFVEMS----TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEAL  509 (758)
Q Consensus       434 ~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  509 (758)
                      ...+..++|..+|++..    ..+...|...+..+...|+.++|..+|+++++.........|...+..+.+.|+++.|+
T Consensus        75 ~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar  154 (308)
T d2onda1          75 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR  154 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred             hcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHH
Confidence            34456788888888753    34667899999999999999999999999987533333457889999999999999999


Q ss_pred             HHHHHhhhhcCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhcc
Q 004369          510 GYFEMMQKEYKIKPVMDHYMCLIDMF-VRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKL  586 (758)
Q Consensus       510 ~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  586 (758)
                      ++|+.+.+.  .+.+...|....... ...|+.+.|..+|+++ ...| +...|..++......|+.+.|..+++++++.
T Consensus       155 ~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~  232 (308)
T d2onda1         155 MIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            999999763  233445555555443 3468999999999998 3334 6788999999999999999999999999998


Q ss_pred             CCCCch----hHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          587 KPKDCE----SYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       587 ~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      .|.++.    .|......-...|+.+.+.++.+.+.+.
T Consensus       233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            776543    5666677667889999999999988764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.64  E-value=1e-08  Score=103.29  Aligned_cols=243  Identities=6%  Similarity=-0.057  Sum_probs=176.4

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHH-H---HHHHHH-------hcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHH
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTF-S---SILTIC-------SRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYK  434 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~-~---~ll~a~-------~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~  434 (758)
                      .+..++|++++.+..+.  .|+..+. +   .++...       ...+.++++...+..+.+.. +.+...+..+...+.
T Consensus        42 ~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~  118 (334)
T d1dcea1          42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS  118 (334)
T ss_dssp             TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHH
Confidence            45568999999999874  5765443 1   222322       23445778888888887764 446666666666666


Q ss_pred             hcC--CHHHHHHHHHhcC---CCChhHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHH
Q 004369          435 KCG--RIERASRVFVEMS---TRTLISWTSM-ITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYE  507 (758)
Q Consensus       435 ~~g--~~~~A~~~~~~~~---~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~  507 (758)
                      ..+  ++++|...++++.   .++...|... ...+...|.+++|+..++++.+.  .|+ ...|..+..++.+.|++++
T Consensus       119 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~~~~~~~~~  196 (334)
T d1dcea1         119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPD  196 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCC
T ss_pred             HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCHHH
Confidence            554  5889999888865   4455666544 46677789999999999988874  444 6677888888888888887


Q ss_pred             HHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369          508 ALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLK  585 (758)
Q Consensus       508 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  585 (758)
                      |...+....+.   .|+   ...+...+...+..+++...+.+. ...| +...+..+...+...|+.++|...+.+..+
T Consensus       197 A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  270 (334)
T d1dcea1         197 SGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEP  270 (334)
T ss_dssp             SSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            76665544431   121   122334456667777888777766 2233 555677778888888999999999999999


Q ss_pred             cCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          586 LKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       586 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      .+|.+..++..++.+|...|++++|.+.++...+
T Consensus       271 ~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999876

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.6e-07  Score=77.60  Aligned_cols=89  Identities=17%  Similarity=0.254  Sum_probs=67.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCch
Q 004369          531 LIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWE  608 (758)
Q Consensus       531 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  608 (758)
                      -...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence            355667777777777777776 4455 56667777777778888888888888888888888888888888888888888


Q ss_pred             hHHHHHHHhhh
Q 004369          609 DVAVVKNLTRE  619 (758)
Q Consensus       609 ~a~~~~~~m~~  619 (758)
                      +|...++...+
T Consensus        89 ~A~~~~~~a~~   99 (117)
T d1elwa_          89 EAKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            88887777765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=1.4e-07  Score=86.86  Aligned_cols=97  Identities=9%  Similarity=0.005  Sum_probs=60.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 004369          523 PVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDI  600 (758)
Q Consensus       523 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  600 (758)
                      |+...+......|.+.|++++|+..|+++ ...| +...|..+..+|.+.|++++|+..++++++++|+++.+|..++.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            44555555566666666666666666655 4444 455566666666666666666666666666666666666666666


Q ss_pred             hhhCCCchhHHHHHHHhhh
Q 004369          601 FVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       601 ~~~~g~~~~a~~~~~~m~~  619 (758)
                      |...|++++|...++...+
T Consensus        82 ~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            6666666666666665543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=4e-07  Score=75.15  Aligned_cols=105  Identities=16%  Similarity=0.033  Sum_probs=89.6

Q ss_pred             HHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCh
Q 004369          496 LAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNM  573 (758)
Q Consensus       496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~  573 (758)
                      ...+.+.|++++|...|+.+.+.  -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            44677889999999999998763  2345778999999999999999999999988 5556 678899999999999999


Q ss_pred             hHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369          574 ELGFYAAEQLLKLKPKDCESYAMLLDIFV  602 (758)
Q Consensus       574 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  602 (758)
                      ++|+..++++++++|+++..+..+.++-+
T Consensus        88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999998888877654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.3e-06  Score=79.24  Aligned_cols=138  Identities=7%  Similarity=-0.089  Sum_probs=92.6

Q ss_pred             hhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHH
Q 004369          430 VNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEA  508 (758)
Q Consensus       430 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a  508 (758)
                      ...+...|+++.|.+.|.++.+++..+|..+...|...|++++|++.|++.++.  .|+ ...|..+..++.+.|++++|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence            344667788888888888888888888888888888888888888888888874  454 56777777788888888888


Q ss_pred             HHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369          509 LGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLK  585 (758)
Q Consensus       509 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  585 (758)
                      ...|++....  .+++..     +              -+...  ..+++ ..++..+..++...|++++|.+.++++++
T Consensus        90 ~~~~~kAl~~--~~~n~~-----~--------------~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          90 IKDLKEALIQ--LRGNQL-----I--------------DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             HHHHHHHHHT--TTTCSE-----E--------------ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHh--CccCch-----H--------------HHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            8888777542  111100     0              00000  11111 23455666677777777777777777777


Q ss_pred             cCCCC
Q 004369          586 LKPKD  590 (758)
Q Consensus       586 ~~p~~  590 (758)
                      +.|+.
T Consensus       149 ~~~~~  153 (192)
T d1hh8a_         149 MKSEP  153 (192)
T ss_dssp             TCCSG
T ss_pred             cCCCc
Confidence            77664

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=6.1e-07  Score=78.78  Aligned_cols=89  Identities=12%  Similarity=0.145  Sum_probs=69.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCch
Q 004369          531 LIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWE  608 (758)
Q Consensus       531 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  608 (758)
                      ....|.+.|++++|++.|++. ...| +...|..+...+...|++++|...++++++++|++..+|..++.+|...|+++
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence            345667788888888888777 4555 56677788888888888888888888888888888888888888888888888


Q ss_pred             hHHHHHHHhhh
Q 004369          609 DVAVVKNLTRE  619 (758)
Q Consensus       609 ~a~~~~~~m~~  619 (758)
                      +|...++...+
T Consensus        96 eA~~~~~~a~~  106 (159)
T d1a17a_          96 AALRDYETVVK  106 (159)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888777765

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.8e-06  Score=78.20  Aligned_cols=118  Identities=13%  Similarity=0.089  Sum_probs=90.6

Q ss_pred             HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhH
Q 004369          498 ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMEL  575 (758)
Q Consensus       498 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~  575 (758)
                      .+...|++++|++.|..+     .+|+...|..+...|...|++++|++.|++. .+.| +...|..+..++.+.|++++
T Consensus        14 ~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence            355677788888777654     2356677777888888888888888888877 5556 56778888888888888888


Q ss_pred             HHHHHHHHhccCCCC----------------chhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          576 GFYAAEQLLKLKPKD----------------CESYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       576 a~~~~~~~~~~~p~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      |...++++++..|.+                ..++..++.+|.+.|++++|.+.++...+.
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            888888887755443                245678899999999999999999887763

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.39  E-value=3.3e-07  Score=74.92  Aligned_cols=88  Identities=17%  Similarity=0.066  Sum_probs=80.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCc
Q 004369          530 CLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRW  607 (758)
Q Consensus       530 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  607 (758)
                      .+...+.+.|++++|+..|++. ...| +..+|..+..++.+.|++++|+..++++++++|+++.++..|+.+|...|++
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence            4567788999999999999998 5667 6888999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHh
Q 004369          608 EDVAVVKNLT  617 (758)
Q Consensus       608 ~~a~~~~~~m  617 (758)
                      ++|.+.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.5e-06  Score=76.28  Aligned_cols=116  Identities=12%  Similarity=0.054  Sum_probs=94.8

Q ss_pred             HHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCh
Q 004369          496 LAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNM  573 (758)
Q Consensus       496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~  573 (758)
                      ...|.+.|++++|...|+++.+.  -+-+...|..+..+|...|++++|+..|+++ .+.| +..+|..++.++...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence            34677889999999999988763  2335788889999999999999999999988 6667 567899999999999999


Q ss_pred             hHHHHHHHHHhccCCCCchhHHHHHHHhh--hCCCchhHHHH
Q 004369          574 ELGFYAAEQLLKLKPKDCESYAMLLDIFV--SAGRWEDVAVV  613 (758)
Q Consensus       574 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~  613 (758)
                      ++|...++++++++|+++..+..+..+..  ..+.+++|...
T Consensus        95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999998888766643  34456665543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=5.1e-07  Score=82.85  Aligned_cols=114  Identities=7%  Similarity=-0.040  Sum_probs=80.6

Q ss_pred             CCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHH
Q 004369          487 PNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFI  564 (758)
Q Consensus       487 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll  564 (758)
                      |+...+......+.+.|++++|+..|..+.+.  .+.+...|..+..+|.+.|++++|+..|+++ .+.| +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            55555666667777777888888877777652  2334667777788888888888888888777 6667 466778888


Q ss_pred             HHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369          565 AGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV  602 (758)
Q Consensus       565 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  602 (758)
                      .++...|++++|...++++++++|++...+...++.+.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l  117 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL  117 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            88888888888888888888877765544444444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=3.3e-06  Score=82.42  Aligned_cols=193  Identities=10%  Similarity=-0.007  Sum_probs=128.9

Q ss_pred             HhHHhhhHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HHH
Q 004369          426 GTALVNMYKKCGRIERASRVFVEMST-----RT----LISWTSMITGFANHSLSHQALQLFEDMLLAGV---RPN--QVT  491 (758)
Q Consensus       426 ~~~Li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t  491 (758)
                      |......|..+|++++|.+.|.+..+     .+    ..+|+.+...|.+.|++++|++.+++..+.-.   .+.  ..+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            33345667788888888888876542     12    24788888889999999999999987665211   111  345


Q ss_pred             HHHHHHHHh-ccccHHHHHHHHHHhhhhc---CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-------H-
Q 004369          492 FVGALAACS-NAGMVYEALGYFEMMQKEY---KIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-------E-  557 (758)
Q Consensus       492 ~~~ll~a~~-~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------~-  557 (758)
                      +..+...|. ..|++++|.+.++.+.+..   +..+. ..++..+...|...|++++|++.+++. ...|+       . 
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            556666664 4699999999998876421   22221 356788899999999999999999987 21111       1 


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch-----hHHHHHHHhhh--CCCchhHHHHHHHhh
Q 004369          558 VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE-----SYAMLLDIFVS--AGRWEDVAVVKNLTR  618 (758)
Q Consensus       558 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~m~  618 (758)
                      ..+...+..+...|+.+.|...+++..+.+|.-+.     ....|+.+|..  .+++++|...++.+.
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            12345555667889999999999999999875332     33455666654  356788877765443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=6.9e-06  Score=72.60  Aligned_cols=61  Identities=5%  Similarity=-0.031  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          559 IWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       559 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...++...+
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4555666666677777777777777777777777777777777777777777777766655

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.2e-06  Score=70.77  Aligned_cols=107  Identities=11%  Similarity=0.012  Sum_probs=83.0

Q ss_pred             HHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHc-CCCCCH---HHHHHHHH
Q 004369          493 VGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCI---EEAFDFIKKM-DFEPNE---VIWSVFIA  565 (758)
Q Consensus       493 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p~~---~~~~~ll~  565 (758)
                      ..+++.+...+++++|.+.|+...+.  -+.+..++..+..++.+.++.   ++|+++++++ ...|+.   .+|..|..
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            35677777888999999999988763  234567788888888776554   4688888887 545533   36888999


Q ss_pred             HHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh
Q 004369          566 GCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF  601 (758)
Q Consensus       566 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  601 (758)
                      +|.+.|++++|+..++++++++|++..+...+..+.
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            999999999999999999999999987766665443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=4.6e-06  Score=73.78  Aligned_cols=133  Identities=14%  Similarity=0.059  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 004369          456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMF  535 (758)
Q Consensus       456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  535 (758)
                      .+......+.+.|++++|+..|++.+..-  |..            .+..+.-......+.        ...|+.+..+|
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~~--------~~~~~nla~~y   72 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQALR--------LASHLNLAMCH   72 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchhH--------HHHHHHHHHHH
Confidence            44555667777888888888888776531  110            000000001111111        23577788999


Q ss_pred             HHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhH
Q 004369          536 VRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDV  610 (758)
Q Consensus       536 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  610 (758)
                      .+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++.+...+..+..+.+...+.
T Consensus        73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988 6667 7888999999999999999999999999999999999999998888766655543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.21  E-value=1.1e-05  Score=69.77  Aligned_cols=83  Identities=14%  Similarity=0.075  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEE
Q 004369          558 VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKV  637 (758)
Q Consensus       558 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~  637 (758)
                      .+|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...++...+                  
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~------------------  129 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS------------------  129 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence            35677888888999999999999999999999999999999999999999999999988876                  


Q ss_pred             EEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 004369          638 YSFKPNDGLHPQSAEIFKVLDELVEKAKC  666 (758)
Q Consensus       638 ~~f~~~~~~~~~~~~i~~~l~~l~~~m~~  666 (758)
                              ..|...++...+..+..++++
T Consensus       130 --------l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1         130 --------LNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             --------HSTTCHHHHHHHHHHHHHHHH
T ss_pred             --------hCCCCHHHHHHHHHHHHHHHH
Confidence                    345556666666666666654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.1e-06  Score=70.84  Aligned_cols=91  Identities=10%  Similarity=-0.029  Sum_probs=78.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC---ChhHHHHHHHHHhccCCCC--chhHHHHHHHh
Q 004369          529 MCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHG---NMELGFYAAEQLLKLKPKD--CESYAMLLDIF  601 (758)
Q Consensus       529 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~  601 (758)
                      ..+++.+...+++++|.+.|++. ...| +..++..+..++.+.+   ++++|+.+++++++.+|.+  ..++..|+.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            46788888999999999999998 5556 6788888999887654   5567999999999988764  34789999999


Q ss_pred             hhCCCchhHHHHHHHhhh
Q 004369          602 VSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       602 ~~~g~~~~a~~~~~~m~~  619 (758)
                      .+.|++++|.+.++.+.+
T Consensus        83 ~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHH
Confidence            999999999999999987

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=1.4e-05  Score=77.65  Aligned_cols=173  Identities=13%  Similarity=-0.004  Sum_probs=131.7

Q ss_pred             CCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccccHHHHHHH
Q 004369          437 GRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLA----GVRPN-QVTFVGALAACSNAGMVYEALGY  511 (758)
Q Consensus       437 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~  511 (758)
                      +++++|.++|.+           ....|...|++++|++.|.++.+.    +-.++ ..+|..+..+|.+.|++++|.+.
T Consensus        31 ~~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~   99 (290)
T d1qqea_          31 YKFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS   99 (290)
T ss_dssp             HHHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            356777776554           567889999999999999998763    22222 45788889999999999999999


Q ss_pred             HHHhhhhcCCCCC----HHHHHHHHHHHHH-cCCHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHHcCChhHHHH
Q 004369          512 FEMMQKEYKIKPV----MDHYMCLIDMFVR-LGCIEEAFDFIKKM-------DFEP-NEVIWSVFIAGCRRHGNMELGFY  578 (758)
Q Consensus       512 ~~~~~~~~~~~p~----~~~~~~li~~~~~-~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~  578 (758)
                      ++...+-+.-..+    ...+..+...|.. .|++++|++.+++.       +..+ -..++..+...+...|++++|..
T Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~  179 (290)
T d1qqea_         100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD  179 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH
Confidence            9987653211111    4556667777755 59999999999876       1111 13458889999999999999999


Q ss_pred             HHHHHhccCCCCch-------hHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369          579 AAEQLLKLKPKDCE-------SYAMLLDIFVSAGRWEDVAVVKNLTREE  620 (758)
Q Consensus       579 ~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~  620 (758)
                      .++++....|.++.       .+..++..|...|+++.|.+.++...+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            99999998877543       3456777788899999999999988764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=7.1e-06  Score=68.58  Aligned_cols=92  Identities=14%  Similarity=0.129  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch-------hHHHHH
Q 004369          528 YMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE-------SYAMLL  598 (758)
Q Consensus       528 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~  598 (758)
                      +-.+.+.|.+.|++++|++.|++. ...| +..+|..+..+|.+.|++++|+..++++++++|+++.       +|..++
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            445778899999999999999988 5566 6788999999999999999999999999999887665       566677


Q ss_pred             HHhhhCCCchhHHHHHHHhhh
Q 004369          599 DIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       599 ~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ..+...+++++|.+.++....
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            888889999999999987654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=1.2e-05  Score=70.95  Aligned_cols=64  Identities=6%  Similarity=-0.033  Sum_probs=53.0

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++...+
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            3446777778888888888888888888888888888888888888888888888888888776

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.03  E-value=3e-05  Score=68.19  Aligned_cols=92  Identities=12%  Similarity=0.045  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh
Q 004369          526 DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS  603 (758)
Q Consensus       526 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  603 (758)
                      ..|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++.+...+..+...
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35667888899999999999999988 5556 678899999999999999999999999999999999999999888877


Q ss_pred             CCCchh-HHHHHHHh
Q 004369          604 AGRWED-VAVVKNLT  617 (758)
Q Consensus       604 ~g~~~~-a~~~~~~m  617 (758)
                      .+...+ ..+++..|
T Consensus       145 ~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1         145 AKEHNERDRRTYANM  159 (168)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHH
Confidence            765543 34444444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.03  E-value=2.1e-05  Score=69.29  Aligned_cols=130  Identities=13%  Similarity=0.139  Sum_probs=94.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHH
Q 004369          458 TSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFV  536 (758)
Q Consensus       458 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~  536 (758)
                      ......+...|++++|+..|+++++.            +..........+.      .    .+.| ....|..+..+|.
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~------~----~~~~~~~~~~~nla~~~~   88 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG------A----KLQPVALSCVLNIGACKL   88 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH------G----GGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH------H----HhChhhHHHHHHHHHHHH
Confidence            34455667788888888888776541            0000000000100      0    1122 3456778899999


Q ss_pred             HcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchh
Q 004369          537 RLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWED  609 (758)
Q Consensus       537 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  609 (758)
                      +.|++++|+..++++ .+.| +...|..+..++...|++++|+..++++++++|+++.++..|..++.+.....+
T Consensus        89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1          89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998 7777 678899999999999999999999999999999999999888887765444333

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.02  E-value=5.4e-05  Score=66.49  Aligned_cols=61  Identities=7%  Similarity=-0.055  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          559 IWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       559 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      +|..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|...++.+.+
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4666788889999999999999999999999999999999999999999999999999876

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.99  E-value=0.00099  Score=63.03  Aligned_cols=223  Identities=8%  Similarity=-0.057  Sum_probs=148.3

Q ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHh----cCCHHHHHHHHHhcCCC-ChhHHHHHHHHH
Q 004369          390 TFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKK----CGRIERASRVFVEMSTR-TLISWTSMITGF  464 (758)
Q Consensus       390 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~  464 (758)
                      .+..+-..+-..++.++|.+.+....+.|   +...+..|..+|..    ..+...|...+...... +...+..+...+
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~   80 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLY   80 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccccc
Confidence            34444445556677777777777777665   34445556666665    55778888877776533 445555555555


Q ss_pred             Hh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH-
Q 004369          465 AN----HSLSHQALQLFEDMLLAGVRPNQVTFVGALAA--CSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR-  537 (758)
Q Consensus       465 ~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-  537 (758)
                      ..    ..+.+.|...+++..+.|..+.... ......  .........+...+.....    ..+...+..|...|.. 
T Consensus        81 ~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~-l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~  155 (265)
T d1ouva_          81 YSGQGVSQNTNKALQYYSKACDLKYAEGCAS-LGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAG  155 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred             ccccccchhhHHHHHHHhhhhhhhhhhHHHh-hcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccC
Confidence            43    4678889999998887664322211 112222  1234467777777776654    2455667777777775 


Q ss_pred             ---cCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh----CCC
Q 004369          538 ---LGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRR----HGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS----AGR  606 (758)
Q Consensus       538 ---~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~  606 (758)
                         ..+...+...++...-..+...+..|...+..    .++++.|...++++.+.+  ++..+..|+.+|..    ..+
T Consensus       156 ~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n  233 (265)
T d1ouva_         156 RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRN  233 (265)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCC
T ss_pred             CCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccC
Confidence               44677777777776323366676677766665    568999999999998875  56788999999986    348


Q ss_pred             chhHHHHHHHhhhCCC
Q 004369          607 WEDVAVVKNLTREEKL  622 (758)
Q Consensus       607 ~~~a~~~~~~m~~~~~  622 (758)
                      .++|.+.+++..+.|.
T Consensus       234 ~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         234 EKQAIENFKKGCKLGA  249 (265)
T ss_dssp             STTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHCcC
Confidence            9999999999987664

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.97  E-value=4.9e-05  Score=65.51  Aligned_cols=127  Identities=10%  Similarity=-0.041  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 004369          455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDM  534 (758)
Q Consensus       455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~  534 (758)
                      ..+......+.+.|++.+|+..|++.+..  .|..           ....-.........        .....|+.+..+
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~-----------~~~~~~~~~~~~~~--------~~~~~~~Nla~~   76 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHT-----------EEWDDQILLDKKKN--------IEISCNLNLATC   76 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTC-----------TTCCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccch-----------hhhhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence            45666777888899999999999888763  1110           00000000000001        123467788999


Q ss_pred             HHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369          535 FVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV  602 (758)
Q Consensus       535 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  602 (758)
                      |.+.|++++|++.+++. ...| +..+|..+..++...|++++|...++++++++|+++.+...+..+..
T Consensus        77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999997 6667 78899999999999999999999999999999999988877766543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4e-06  Score=88.57  Aligned_cols=93  Identities=9%  Similarity=-0.107  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh
Q 004369          525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS  603 (758)
Q Consensus       525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  603 (758)
                      ...+..+...+.+.|+.++|...+++. ...| ..++..|+..+...|++++|...++++++++|++...|..|+.+|..
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~  198 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS  198 (497)
T ss_dssp             -----------------------CCHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            344455555555666666555544433 1111 23455555666666666666666666666666666666666666666


Q ss_pred             CCCchhHHHHHHHhh
Q 004369          604 AGRWEDVAVVKNLTR  618 (758)
Q Consensus       604 ~g~~~~a~~~~~~m~  618 (758)
                      .|+..+|...+.+..
T Consensus       199 ~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         199 KGDHLTTIFYYCRSI  213 (497)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            666666666555554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.69  E-value=7.6e-05  Score=60.28  Aligned_cols=82  Identities=11%  Similarity=0.034  Sum_probs=38.2

Q ss_pred             HhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhH
Q 004369          499 CSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMEL  575 (758)
Q Consensus       499 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~  575 (758)
                      +.+.|++++|...|++..+.   .| +...|..+..++.+.|++++|+..+++. .+.| +..+|..|...+...|+.++
T Consensus        26 ~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~  102 (112)
T d1hxia_          26 MLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA  102 (112)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHhhhccc---ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHH
Confidence            34444444444444444432   12 2344444444455555555555554444 3333 34445555555555555555


Q ss_pred             HHHHHHHH
Q 004369          576 GFYAAEQL  583 (758)
Q Consensus       576 a~~~~~~~  583 (758)
                      |.+.+++.
T Consensus       103 A~~~l~~~  110 (112)
T d1hxia_         103 ALASLRAW  110 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.67  E-value=0.0044  Score=59.96  Aligned_cols=135  Identities=12%  Similarity=0.070  Sum_probs=75.3

Q ss_pred             HHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChH
Q 004369          113 TFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIR  192 (758)
Q Consensus       113 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~  192 (758)
                      ..+.+.+.+.|.++.|..++..+..     |..++..+.+.++++.|.+++.+..      +..+|..+..+|.......
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~   86 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFR   86 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHH
Confidence            3444555566777777777766553     6667777777777777777665431      4556666666666555443


Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHH
Q 004369          193 LGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFF  264 (758)
Q Consensus       193 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~  264 (758)
                      .+     ++.......++.-...++..|-..|..++...+++....   .+...++-++..|++.+ +++-++.+
T Consensus        87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l  155 (336)
T d1b89a_          87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHL  155 (336)
T ss_dssp             HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHH
Confidence            32     122222334444556677778888888888888776432   45556777777777754 34444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.65  E-value=2.9e-05  Score=66.19  Aligned_cols=76  Identities=13%  Similarity=0.103  Sum_probs=50.3

Q ss_pred             CHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC-----------ChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369          540 CIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHG-----------NMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGR  606 (758)
Q Consensus       540 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  606 (758)
                      .+++|++.|+++ .+.| +..+|..+..+|...|           +++.|...++++++++|++...+..|....     
T Consensus        56 ~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-----  130 (145)
T d1zu2a1          56 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-----  130 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-----
Confidence            345566666655 4455 4556666666665443           468899999999999999987777776554     


Q ss_pred             chhHHHHHHHhhhCCC
Q 004369          607 WEDVAVVKNLTREEKL  622 (758)
Q Consensus       607 ~~~a~~~~~~m~~~~~  622 (758)
                        .|.+++....++|+
T Consensus       131 --ka~~~~~e~~k~~~  144 (145)
T d1zu2a1         131 --KAPQLHAEAYKQGL  144 (145)
T ss_dssp             --THHHHHHHHHHSSS
T ss_pred             --HHHHHHHHHHHHhc
Confidence              45555555555553

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=0.00026  Score=62.45  Aligned_cols=112  Identities=12%  Similarity=0.022  Sum_probs=78.5

Q ss_pred             HHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 004369          496 LAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMEL  575 (758)
Q Consensus       496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~  575 (758)
                      .......|++++|.+.|.....-+.-.+-...        ...........-++..    ....+..+...+...|++++
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~~~   85 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALVED----KVLAHTAKAEAEIACGRASA   85 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCchH
Confidence            34566778888888888887653221110000        0000011111111110    23467889999999999999


Q ss_pred             HHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          576 GFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       576 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      |...++++++.+|.+...|..|+.+|.+.|++++|.+.++.+++
T Consensus        86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998754

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.54  E-value=4.5e-05  Score=65.02  Aligned_cols=84  Identities=11%  Similarity=0.024  Sum_probs=60.3

Q ss_pred             HHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHH----------cCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh
Q 004369          536 VRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRR----------HGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS  603 (758)
Q Consensus       536 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  603 (758)
                      -|.+.+++|++.|++. ...| +..+|..+..++..          .+.+++|+..++++++++|+++.+|..++.+|..
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~   87 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence            3445566666666665 4444 44455555555543          2456789999999999999999999999999988


Q ss_pred             CCC-----------chhHHHHHHHhhh
Q 004369          604 AGR-----------WEDVAVVKNLTRE  619 (758)
Q Consensus       604 ~g~-----------~~~a~~~~~~m~~  619 (758)
                      .|+           +++|.+.++...+
T Consensus        88 ~g~~~~~~~~~~~~~~~A~~~~~kal~  114 (145)
T d1zu2a1          88 FAFLTPDETEAKHNFDLATQFFQQAVD  114 (145)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHhHHHhhhhhhcccc
Confidence            764           5777777777765

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.46  E-value=0.026  Score=54.25  Aligned_cols=49  Identities=6%  Similarity=0.053  Sum_probs=30.4

Q ss_pred             HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369          563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV  613 (758)
Q Consensus       563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  613 (758)
                      ++.-+.+.+++......++.....+  +...+..|..+|...++++.-++.
T Consensus       254 ~V~~~~k~~~l~li~p~Le~v~~~n--~~~vn~al~~lyie~~d~~~l~~~  302 (336)
T d1b89a_         254 AVNYFSKVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEEDYQALRTS  302 (336)
T ss_dssp             HHHHHHHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHcC--hHHHHHHHHHHHhCcchhHHHHHH
Confidence            3444455566666666666654433  346788888888888886554433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.44  E-value=0.00024  Score=61.24  Aligned_cols=88  Identities=10%  Similarity=-0.020  Sum_probs=65.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHc----CCCCC----------HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC--------
Q 004369          532 IDMFVRLGCIEEAFDFIKKM----DFEPN----------EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK--------  589 (758)
Q Consensus       532 i~~~~~~g~~~~A~~~~~~m----~~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------  589 (758)
                      ...+.+.|++++|++.|++.    +..|+          ...|+.+..++...|++++|...+++++++.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            44555667777777777665    22222          356788888888899999998888888875432        


Q ss_pred             ---CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          590 ---DCESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       590 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                         ....+..++.+|...|++++|...++...+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence               123578899999999999999999999875

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.44  E-value=0.034  Score=51.79  Aligned_cols=211  Identities=12%  Similarity=-0.034  Sum_probs=143.9

Q ss_pred             CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHh----cC
Q 004369          366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSR----LVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKK----CG  437 (758)
Q Consensus       366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~----~g  437 (758)
                      .+++++|++.|++..+.|   |...+..+-..+..    ..+...+...+....+.+.   ......|...+..    .+
T Consensus        15 ~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~l~~~~~~~~~~~~   88 (265)
T d1ouva_          15 EKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHLLGNLYYSGQGVSQ   88 (265)
T ss_dssp             TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCC
T ss_pred             CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhccccccccccccch
Confidence            899999999999998876   44444445555543    5678889988888887763   3333444444433    56


Q ss_pred             CHHHHHHHHHhcCCC-ChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cccHHHH
Q 004369          438 RIERASRVFVEMSTR-TLISWTSMITGFAN----HSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN----AGMVYEA  508 (758)
Q Consensus       438 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a  508 (758)
                      +.+.|...++...+. .......+...+..    ......|...+.+....   .+...+..+...+..    ..+...+
T Consensus        89 ~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~  165 (265)
T d1ouva_          89 NTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKA  165 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             hhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccc
Confidence            788899988876543 33344444444443    45577888888877664   345556666655553    5677888


Q ss_pred             HHHHHHhhhhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHH
Q 004369          509 LGYFEMMQKEYKIKPVMDHYMCLIDMFVR----LGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRR----HGNMELGFYAA  580 (758)
Q Consensus       509 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~  580 (758)
                      ..+++...+. |   +......|..+|..    ..+.++|...|++....-++..+..|...|..    .+|.++|.+.+
T Consensus       166 ~~~~~~a~~~-g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~  241 (265)
T d1ouva_         166 LASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENF  241 (265)
T ss_dssp             HHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred             hhhhhccccc-c---ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence            8888887662 3   45566667767765    56899999999998222356677777777764    34899999999


Q ss_pred             HHHhccCCC
Q 004369          581 EQLLKLKPK  589 (758)
Q Consensus       581 ~~~~~~~p~  589 (758)
                      +++.+.++.
T Consensus       242 ~kAa~~g~~  250 (265)
T d1ouva_         242 KKGCKLGAK  250 (265)
T ss_dssp             HHHHHHTCH
T ss_pred             HHHHHCcCH
Confidence            999887754

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00079  Score=55.52  Aligned_cols=92  Identities=12%  Similarity=0.066  Sum_probs=49.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-----HHHHHHH
Q 004369          458 TSMITGFANHSLSHQALQLFEDMLLAGVRP-NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-----MDHYMCL  531 (758)
Q Consensus       458 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l  531 (758)
                      ..+...|.+.|++++|+..|++.++.  .| +...+..+..+|.+.|++++|.+.++.+.+...-.+.     ..+|..+
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            34555566666666666666666663  33 3455555666666666666666666665441100111     1234445


Q ss_pred             HHHHHHcCCHHHHHHHHHHc
Q 004369          532 IDMFVRLGCIEEAFDFIKKM  551 (758)
Q Consensus       532 i~~~~~~g~~~~A~~~~~~m  551 (758)
                      .+.+...+++++|++.|++.
T Consensus        86 g~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHH
Confidence            55555555555555555543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00035  Score=54.18  Aligned_cols=74  Identities=11%  Similarity=0.113  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHc----C----CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369          526 DHYMCLIDMFVRLGCIEEAFDFIKKM----D----FEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM  596 (758)
Q Consensus       526 ~~~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  596 (758)
                      +.+--+...+.+.|++++|...|++.    +    ..++ ..++..|..++.+.|++++|...++++++++|+++.++..
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            33445677788888888888887766    1    1222 4578899999999999999999999999999999988887


Q ss_pred             HHH
Q 004369          597 LLD  599 (758)
Q Consensus       597 l~~  599 (758)
                      +..
T Consensus        86 l~~   88 (95)
T d1tjca_          86 LKY   88 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            744

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=8.1e-05  Score=78.22  Aligned_cols=132  Identities=11%  Similarity=-0.045  Sum_probs=71.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004369          468 SLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFD  546 (758)
Q Consensus       468 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  546 (758)
                      +.++.|+..+++...  +.|+ ...+..+...+.+.|+.++|...+......   .| ...+..+.+++...|++++|..
T Consensus       100 ~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~  173 (497)
T d1ya0a1         100 GFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAES  173 (497)
T ss_dssp             HHHHHHHHHHTC---------------------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHH
Confidence            445555554444333  3333 445555666667777777777666555431   11 2456677888888888888888


Q ss_pred             HHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC
Q 004369          547 FIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG  605 (758)
Q Consensus       547 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  605 (758)
                      .|++. ...| +...|+.|...+...|+..+|...+.+++..+|+.+.++..|...|.+..
T Consensus       174 ~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         174 YYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            88877 5666 45678888888888888888888888888888877777777777765443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.24  E-value=0.0012  Score=56.64  Aligned_cols=64  Identities=9%  Similarity=0.026  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHc--------CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369          526 DHYMCLIDMFVRLGCIEEAFDFIKKM--------DFEPN-----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK  589 (758)
Q Consensus       526 ~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  589 (758)
                      ..|+.+..+|...|++++|.+.+++.        ...++     ...+..+..++...|++++|...+++++++.|.
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            34556666666666666666665554        12222     224667788888889999999999888887654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.98  E-value=0.001  Score=62.47  Aligned_cols=123  Identities=14%  Similarity=-0.075  Sum_probs=73.5

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHH
Q 004369          466 NHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEE  543 (758)
Q Consensus       466 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~  543 (758)
                      +.|++++|+..+++..+.  .|+ ...+..+...++..|++++|...++...+.   .|+ ...+..+..++...+..++
T Consensus         8 ~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence            457777777777777764  444 556677777777777777777777777652   344 3444444444444444444


Q ss_pred             HHHHHHHc--CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh
Q 004369          544 AFDFIKKM--DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES  593 (758)
Q Consensus       544 A~~~~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  593 (758)
                      +..-....  ...|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence            33322222  12232 2333444555667788888888888888887776544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0015  Score=50.43  Aligned_cols=62  Identities=10%  Similarity=-0.091  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC-------chhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          558 VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD-------CESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       558 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ..+-.++..+.+.|+++.|...+++++++.|.+       ..++..|+.+|.+.|++++|...++++.+
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            344578889999999999999999999876543       45788999999999999999999999887

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.92  E-value=0.0051  Score=53.70  Aligned_cols=58  Identities=10%  Similarity=0.090  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369          526 DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQL  583 (758)
Q Consensus       526 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~  583 (758)
                      ..+..+...+.+.|++++|+..++++ ...| +...|..++.++...|+.++|++.|+++
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            44556677777777777777777766 5555 5666777777777777777777777665

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.87  E-value=0.00038  Score=65.54  Aligned_cols=121  Identities=12%  Similarity=-0.003  Sum_probs=88.1

Q ss_pred             HhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHH
Q 004369          499 CSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELG  576 (758)
Q Consensus       499 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a  576 (758)
                      ..+.|++++|+..+++..+  .-+.+...+..+...|++.|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            3467999999999999987  34456899999999999999999999999998 66774 45566665555544443333


Q ss_pred             HHHHHHHhc-cCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369          577 FYAAEQLLK-LKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK  621 (758)
Q Consensus       577 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  621 (758)
                      ......... .+|++...+...+..+...|+.++|...++.+.+..
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            322222111 234445566677888999999999999999887643

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.45  E-value=0.12  Score=40.25  Aligned_cols=141  Identities=4%  Similarity=-0.035  Sum_probs=101.2

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004369          464 FANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEE  543 (758)
Q Consensus       464 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  543 (758)
                      +.-.|..++..++..+....   .+..-|+.++.-....-+-+-..+.++.+-+-+.+.|              ++++..
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence            34467788888888887663   2455566666655566666777777777755444333              444444


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCC
Q 004369          544 AFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLS  623 (758)
Q Consensus       544 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  623 (758)
                      ....+-.++.  +..-.+.-++...++|+-+.-.++++.+++.+..+|+....++++|.+.|...++.+++.+.-++|++
T Consensus        75 vv~C~~~~n~--~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          75 VVECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            4444444432  34455667788889999999999999999887777899999999999999999999999999998875

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.64  E-value=0.089  Score=41.51  Aligned_cols=46  Identities=15%  Similarity=0.029  Sum_probs=22.5

Q ss_pred             hHHHHHHHHHhccCCCCc-hhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369          574 ELGFYAAEQLLKLKPKDC-ESYAMLLDIFVSAGRWEDVAVVKNLTRE  619 (758)
Q Consensus       574 ~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~  619 (758)
                      ++|+.+++.+++.+|.+. ..+..|+-+|.+.|++++|.+.++.+.+
T Consensus        55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            344555555554444332 3444555555555555555555555443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=91.70  E-value=1.3  Score=35.20  Aligned_cols=47  Identities=13%  Similarity=-0.122  Sum_probs=23.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHhhh
Q 004369          468 SLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN----AGMVYEALGYFEMMQK  517 (758)
Q Consensus       468 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~  517 (758)
                      .+.++|+++|++..+.|.   ......|...|.+    ..+.++|.++|+...+
T Consensus        73 ~d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          73 KDLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            345666666666665542   2222222222322    3456667777666655

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=91.52  E-value=1.5  Score=34.98  Aligned_cols=44  Identities=7%  Similarity=-0.051  Sum_probs=21.7

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369          469 LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK  517 (758)
Q Consensus       469 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  517 (758)
                      ++++|+++|++..+.|- |.  ....+  +.....+.++|.++++...+
T Consensus         8 d~~~A~~~~~kaa~~g~-~~--a~~~l--~~~~~~~~~~a~~~~~~aa~   51 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE-MF--GCLSL--VSNSQINKQKLFQYLSKACE   51 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC-TT--HHHHH--HTCTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC-hh--hhhhh--ccccccCHHHHHHHHhhhhc
Confidence            45666777766666552 11  11112  12233455566666655544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.51  E-value=0.92  Score=35.45  Aligned_cols=72  Identities=6%  Similarity=0.062  Sum_probs=48.6

Q ss_pred             CCHHHHHHHHHHHHHcC---CHHHHHHHHHHc-CCCC-C-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369          523 PVMDHYMCLIDMFVRLG---CIEEAFDFIKKM-DFEP-N-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESY  594 (758)
Q Consensus       523 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  594 (758)
                      |++.+--....++.+..   ++++++.++++. ...| + ...|-.|.-+|.+.|+++.|.+.++++++++|++..+.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            44444444555555554   345667777666 2234 3 24667788889999999999999999999999886543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.95  E-value=11  Score=36.78  Aligned_cols=349  Identities=9%  Similarity=-0.038  Sum_probs=172.8

Q ss_pred             HHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCC-CCChhhHHHHHHHHcccCChHHH
Q 004369          217 CSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGI-QPNEFTLTSISSVCGTMLSLRVG  295 (758)
Q Consensus       217 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a  295 (758)
                      +..+.+.++.......+..-+ .+...--....+..+.|+.++|...+...-..|. .|+.                  .
T Consensus        79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~------------------c  139 (450)
T d1qsaa1          79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA------------------C  139 (450)
T ss_dssp             HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH------------------H
T ss_pred             HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchH------------------H
Confidence            345566677776666554322 1333333556677788999888888887766542 2322                  2


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHH
Q 004369          296 AQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSI  375 (758)
Q Consensus       296 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l  375 (758)
                      ..++....+.|.. +...+-.-+......|+...|..+...++..........+....+              ...+...
T Consensus       140 ~~l~~~~~~~~~l-t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~--------------p~~~~~~  204 (450)
T d1qsaa1         140 DKLFSVWRASGKQ-DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN--------------PNTVLTF  204 (450)
T ss_dssp             HHHHHHHHHTTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC--------------GGGHHHH
T ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC--------------hHhHHHH
Confidence            2344444444432 233333445555666888888888887765433333334433222              1222221


Q ss_pred             HHHhHhCCCCCCHHHHHHHHHHHhc--ccchHHHHHHHHHHHHcC-CCChH--HHHhHHhhhHHhcCCHHHHHHHHHhcC
Q 004369          376 FSKLNSSGMKPDLYTFSSILTICSR--LVALEQGEQIHALTLKTG-FLSDV--VVGTALVNMYKKCGRIERASRVFVEMS  450 (758)
Q Consensus       376 ~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~~-~~~~~--~~~~~Li~~y~~~g~~~~A~~~~~~~~  450 (758)
                      ...     ..++......+..+..+  ..+.+.+...+....... +.++.  .....+...+...+..+.|...+....
T Consensus       205 ~~~-----~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~  279 (450)
T d1qsaa1         205 ART-----TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI  279 (450)
T ss_dssp             HHH-----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH
T ss_pred             Hhc-----CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhc
Confidence            111     11222222222233322  234555666555554432 22211  111223333344555566666554433


Q ss_pred             --CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHH
Q 004369          451 --TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHY  528 (758)
Q Consensus       451 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~  528 (758)
                        ..+.....-.+......+++..+...++.|-.. ..-...-.--+..+....|+.++|..+|..+..    .++  -|
T Consensus       280 ~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fY  352 (450)
T d1qsaa1         280 MRSQSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FY  352 (450)
T ss_dssp             HTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HH
T ss_pred             ccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hH
Confidence              222222222333345567777777777766432 111223334455677777888888888877753    133  33


Q ss_pred             HHHHHHHHHcCCHHHHHHHH-HHcCCCCCHH-H---HHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh
Q 004369          529 MCLIDMFVRLGCIEEAFDFI-KKMDFEPNEV-I---WSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS  603 (758)
Q Consensus       529 ~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~-~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  603 (758)
                      .-|..  .+.|..-   .+- ...+..++.. .   -..-+..+...|....|...+..+.+..  ++.-...++.+..+
T Consensus       353 G~LAa--~~Lg~~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~  425 (450)
T d1qsaa1         353 PMVAA--QRIGEEY---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFN  425 (450)
T ss_dssp             HHHHH--HHTTCCC---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHH
T ss_pred             HHHHH--HHcCCCC---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHH
Confidence            33221  1122100   000 0001111110 0   1122345567788888888887776543  34566677788888


Q ss_pred             CCCchhHHHHHHHhh
Q 004369          604 AGRWEDVAVVKNLTR  618 (758)
Q Consensus       604 ~g~~~~a~~~~~~m~  618 (758)
                      .|.++.|+.......
T Consensus       426 ~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         426 NQWWDLSVQATIAGK  440 (450)
T ss_dssp             TTCHHHHHHHHHHTT
T ss_pred             CCChhHHHHHHHHHH
Confidence            888888877666553

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=88.62  E-value=4.2  Score=31.37  Aligned_cols=85  Identities=12%  Similarity=0.016  Sum_probs=56.3

Q ss_pred             HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 004369          434 KKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFE  513 (758)
Q Consensus       434 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  513 (758)
                      .+|+++......+-.+.. +..-.+.-+..+.+.|+-++-.++++.+.+. -+|++.....+..||.+.|...++-+++.
T Consensus        67 s~C~Nlk~vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~  144 (161)
T d1wy6a1          67 DKCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI  144 (161)
T ss_dssp             GGCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence            456666666666555432 2233455566777778877777777776663 46777777777778888888888888887


Q ss_pred             HhhhhcCC
Q 004369          514 MMQKEYKI  521 (758)
Q Consensus       514 ~~~~~~~~  521 (758)
                      ++.++ |+
T Consensus       145 ~ACe~-G~  151 (161)
T d1wy6a1         145 EACKK-GE  151 (161)
T ss_dssp             HHHHT-TC
T ss_pred             HHHHH-hH
Confidence            77763 54

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.38  E-value=12  Score=36.50  Aligned_cols=115  Identities=10%  Similarity=0.021  Sum_probs=62.5

Q ss_pred             CCHHHHHHHHHHHHHcC-CCCCHH-HHH-HHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004369          468 SLSHQALQLFEDMLLAG-VRPNQV-TFV-GALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA  544 (758)
Q Consensus       468 g~~~~A~~~~~~m~~~g-~~p~~~-t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A  544 (758)
                      .+.+.|..++....... ..++.. ... .+.......+..+.+...+...... +  .+.....-.+....+.++...+
T Consensus       228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~w~~~~al~~~~~~~~  304 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-S--QSTSLIERRVRMALGTGDRRGL  304 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-C--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred             cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc-c--cchHHHHHHHHHHHHcCChHHH
Confidence            46677777777665532 222211 111 1222233445566666666655442 2  2333333344455566778888


Q ss_pred             HHHHHHcCCCCCH-HHH-HHHHHHHHHcCChhHHHHHHHHHhc
Q 004369          545 FDFIKKMDFEPNE-VIW-SVFIAGCRRHGNMELGFYAAEQLLK  585 (758)
Q Consensus       545 ~~~~~~m~~~p~~-~~~-~~ll~~~~~~g~~~~a~~~~~~~~~  585 (758)
                      ...++.|+..|.. .-| -=+..+....|+.+.|...+..+-.
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            8888877444321 122 2345667777888888877777754

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.07  E-value=2.4  Score=30.99  Aligned_cols=63  Identities=16%  Similarity=0.204  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 004369          469 LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLID  533 (758)
Q Consensus       469 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~  533 (758)
                      +.-++..-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.  .++...|..+++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence            455666667777777889999999999999999999999999999987643  344567776664