Citrus Sinensis ID: 004389

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKVVFPPEVLALIF

cccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccHHHHHHHHccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccc

ccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEccccccccEHEHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHEHHHHHHHHHHccHHHHHHHc

MELQNTVKEALNAlyhhpddavRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKkfhkgppkvrTQISIAVAALAVHIsaedwggggivNWLRdemnshpefvpGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLkhripgsvlashPLVLTALSSLHSEILSEASVNVISELIHYsaagssggatvnmpLIQVIVPQIMSLkahltdsskdEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLevashpeydiasmTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRvqypqdyqdlsLEDLKEfkhtrydlaccssstlTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVaccgnkhnewrpaEAALFCIRAISTYVSVVEAEVMPQVMAllpklpqqpqlLQTVCLTIGAYSkwfdaassdpSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTavngegslkvsaeDSLHLVEALSMVITELPQVDAKKALEMlclpvvtplqeiinqgpeilqkkhprdltvhIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSevikvvfppeVLALIF

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKfhkgppkvRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGpeilqkkhprdLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKVVFPPEVLALIF

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAllpklpqqpqllqTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTaaaaalaFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKVVFPPEVLALIF

**********LNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSK******************SLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAAR***********TSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHL*********VKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGN**********RLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQG*******************************

*ELQNTVKEALNALYHH*****RMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVF**********RRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYI***********RSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKVVFPPEVLALIF

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH********EDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGN*********RRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKVVFPPEVLALIF

*ELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYIS******AEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKVVFPPEVLALIF

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		757	2.2.26 [Sep-21-2011]
Q9Y5L0		923	Transportin-3 OS=Homo sap	yes	no	0.881	0.722	0.255	8e-58
Q6P2B1		923	Transportin-3 OS=Mus musc	yes	no	0.881	0.722	0.252	3e-56
Q9USZ2		955	Uncharacterized protein C	yes	no	0.898	0.712	0.243	5e-44
Q99189		972	mRNA transport regulator	yes	no	0.824	0.641	0.233	6e-32
A7YWD2		963	Importin-13 OS=Bos taurus	no	no	0.766	0.602	0.233	5e-25
O94829		963	Importin-13 OS=Homo sapie	no	no	0.766	0.602	0.233	5e-25
Q8K0C1		963	Importin-13 OS=Mus muscul	no	no	0.766	0.602	0.233	6e-25
Q5R974		963	Importin-13 OS=Pongo abel	no	no	0.767	0.603	0.231	9e-25
Q9JM04		963	Importin-13 OS=Rattus nor	no	no	0.767	0.603	0.230	3e-23
Q5ZIC8		958	Importin-13 OS=Gallus gal	no	no	0.760	0.601	0.239	8e-23

>sp\|Q9Y5L0\|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3	Back alignment and function desciption

 Score =  225 bits (574), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 195/763 (25%), Positives = 349/763 (45%), Gaps = 96/763 (12%)

Query: 7   VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRS 66
           V +A+ ALYH PD + + +A  WL + Q ++ AW+++D LL     ++E+  F +QT++ 
Sbjct: 11  VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQ-IRQDVESCYFAAQTMKM 69

Query: 67  KVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGI 126
           K+Q    ELP+++   L+DSL T ++      P + TQ+++A+A LA+ + +  W G   
Sbjct: 70  KIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPS--WKG--C 125

Query: 127 VNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLT 186
           V  L ++ ++    +P  LE+LTVLPEEV +  +     RR +  ++L       +S L 
Sbjct: 126 VQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLM 185

Query: 187 ACLHINELKEQVL----EAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNV 242
            C+      E++L        SW  L       VL S+ +    L +L  E+L +   + 
Sbjct: 186 TCVEKAGTDEKMLMKVFRCLGSWFNL------GVLDSNFMANNKLLALLFEVLQQ---DK 236

Query: 243 ISELIHYSAAGSSGGA-------TVNMPLIQVIVPQIMSLKA--HLTDSSKDEEDVKAIA 293
            S  +H +A+     A         N+PL   +   +++L+   H+  + +D + V    
Sbjct: 237 TSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYC 296

Query: 294 RLFADMGDSYVELIATGSDESM---LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR 350
           R+F ++ ++++E I     + +     +  LL  A HP+Y++  ++FNFW+ L   L K 
Sbjct: 297 RIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKT 356

Query: 351 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLE--DLKEFKHT 408
           +  +  G              +F++  + L+  ++   Q   D++ +  E  D  EF+  
Sbjct: 357 NDEVIHG--------------IFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFR-- 400

Query: 409 RYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWR 468
                             + V+D++ D   ++G       LY    EG       +  W 
Sbjct: 401 ------------------MRVSDLVKDLIFLIGSMECFAQLYSTLKEG-------NPPWE 435

Query: 469 PAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVC--LTIGAYSKWFDAA 526
             EA LF + AI+     V+ E  P ++ +L  + + P+ + T     +I    +  +  
Sbjct: 436 VTEAVLFIMAAIA---KSVDPENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVV 492

Query: 527 SSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586
             +P  L  VL  L  G+   +  A+AAA A  +IC  CR  +  + +GL  + R+    
Sbjct: 493 DRNPQFLDPVLGYLMKGLC-EKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIARSL--- 548

Query: 587 EGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH 646
             S  +S E ++ L++  ++V+  LP     + L  LC   V  L+++++Q P       
Sbjct: 549 -DSFLLSPEAAVGLLKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEPS---NGI 604

Query: 647 PRDLTVHIDRFAYIFRYVN--------HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESL 698
             D TV +DR A IFR+ N        HP      IQ +WP+     +    D R +E  
Sbjct: 605 SSDPTVFLDRLAVIFRHTNPIVENGQTHP--CQKVIQEIWPVLSETLNKHRADNRIVERC 662

Query: 699 CRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSS 741
           CR  ++AVR   +     +  ++ ++  +Y  HQ  CFLYL S
Sbjct: 663 CRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGS 705

Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.
Homo sapiens (taxid: 9606)

>sp\|Q6P2B1\|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1	Back alignment and function description

>sp\|Q9USZ2\|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2	Back alignment and function description

>sp\|Q99189\|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1	Back alignment and function description

>sp\|A7YWD2\|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|O94829\|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3	Back alignment and function description

>sp\|Q8K0C1\|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|Q5R974\|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q9JM04\|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|Q5ZIC8\|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		757
225457174		960	PREDICTED: transportin-3 [Vitis vinifera	0.963	0.759	0.844	0.0
449440732		968	PREDICTED: transportin-3-like [Cucumis s	0.963	0.753	0.817	0.0
356562787		960	PREDICTED: transportin-3-like isoform 1	0.963	0.759	0.817	0.0
356562789		968	PREDICTED: transportin-3-like isoform 2	0.963	0.753	0.809	0.0
356512770		959	PREDICTED: transportin-3-like isoform 1	0.961	0.759	0.812	0.0
356512772		967	PREDICTED: transportin-3-like isoform 2	0.961	0.752	0.803	0.0
255540833		967	transportin, putative [Ricinus communis]	0.963	0.753	0.785	0.0
297797229		961	hypothetical protein ARALYDRAFT_496440 [	0.959	0.755	0.736	0.0
42568712		958	armadillo/beta-catenin-like repeat-conta	0.959	0.757	0.735	0.0
357146633		964	PREDICTED: transportin-3-like [Brachypod	0.956	0.751	0.653	0.0

>gi\|225457174\|ref\|XP_002283854.1\| PREDICTED: transportin-3 [Vitis vinifera] gi\|297733855\|emb\|CBI15102.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1269 bits (3284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/747 (84%), Positives = 675/747 (90%), Gaps = 18/747 (2%)

Query: 1   MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFC 60
           MELQNTVKEALNALYHHPDD+VRMQADRWLQDFQ TIDAWQV+DNLLHDATSNLETLIFC
Sbjct: 1   MELQNTVKEALNALYHHPDDSVRMQADRWLQDFQRTIDAWQVSDNLLHDATSNLETLIFC 60

Query: 61  SQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAED 120
           SQTLRSKVQRD EELPSEA R L+DSLNTLLKKFHKGPPKVRTQISIAVAALAVH+ AED
Sbjct: 61  SQTLRSKVQRDFEELPSEAFRPLRDSLNTLLKKFHKGPPKVRTQISIAVAALAVHVPAED 120

Query: 121 WGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEV 180
           WG GGIV WLRDEMNSHPEF+PGFLELL VLPEEVFNYKIAARPERRRQFEKELTS+MEV
Sbjct: 121 WGDGGIVKWLRDEMNSHPEFIPGFLELLMVLPEEVFNYKIAARPERRRQFEKELTSEMEV 180

Query: 181 ALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV 240
           AL+ LTACL+INELKEQVLEAFASWLRL+H IPG+VLASHPLVLTALSSL+SE+LSEASV
Sbjct: 181 ALNILTACLNINELKEQVLEAFASWLRLRHGIPGAVLASHPLVLTALSSLNSELLSEASV 240

Query: 241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300
           NV+SELIHY+ AGSSGGA+V +PLIQVIVPQ+M+LK  L DSSKDEEDVKAI RLFADMG
Sbjct: 241 NVVSELIHYTTAGSSGGASVQIPLIQVIVPQVMNLKVQLRDSSKDEEDVKAIGRLFADMG 300

Query: 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA 360
           DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWH+LQV LTKRD+Y+SFGNEA
Sbjct: 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHNLQVNLTKRDAYLSFGNEA 360

Query: 361 SAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTL 420
           S EAER+RRLQVFRS+YESLVSLVS RV+YP+DYQDLS EDLK+FK TRY          
Sbjct: 361 SIEAERNRRLQVFRSSYESLVSLVSSRVRYPEDYQDLSYEDLKDFKQTRY---------- 410

Query: 421 TESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGN-KHNEWRPAEAALFCIRA 479
                  AVADVLIDAASVLGG+ATLKILY+K VE VA CGN +HNEWRPAEAAL+CIRA
Sbjct: 411 -------AVADVLIDAASVLGGEATLKILYMKLVEAVASCGNEEHNEWRPAEAALYCIRA 463

Query: 480 ISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539
           IS YVSVVEAEVMPQVM +LPKLP QPQLLQTVCLTIGAYSKW DAA    SI  SV+ I
Sbjct: 464 ISNYVSVVEAEVMPQVMNMLPKLPHQPQLLQTVCLTIGAYSKWLDAAPGGLSIFPSVIDI 523

Query: 540 LTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLH 599
           L SGMS SED+AAAAALAF+HICDDCRKKLCG LDGL+++Y  AVNGEG+ KV AEDSLH
Sbjct: 524 LMSGMSISEDSAAAAALAFKHICDDCRKKLCGSLDGLFHIYHRAVNGEGNFKVPAEDSLH 583

Query: 600 LVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY 659
           LVEALSMVITELP   AKKALE LCLPVVT LQE++NQGPEIL KK  R+ TVHIDRFAY
Sbjct: 584 LVEALSMVITELPPDHAKKALEALCLPVVTSLQEVVNQGPEILDKKVAREFTVHIDRFAY 643

Query: 660 IFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGA 719
           IFRYVNHPEAVADAIQRLWPIFKAIFD+RAWDMRTMESLCRACKYAVRTS RFMGITIGA
Sbjct: 644 IFRYVNHPEAVADAIQRLWPIFKAIFDVRAWDMRTMESLCRACKYAVRTSGRFMGITIGA 703

Query: 720 ILEEIQGLYQQHQQPCFLYLSSEVIKV 746
           +LEEIQGLYQ H QPCFLYLSSEVIK+
Sbjct: 704 MLEEIQGLYQLHHQPCFLYLSSEVIKI 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449440732\|ref\|XP_004138138.1\| PREDICTED: transportin-3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356562787\|ref\|XP_003549650.1\| PREDICTED: transportin-3-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356562789\|ref\|XP_003549651.1\| PREDICTED: transportin-3-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356512770\|ref\|XP_003525089.1\| PREDICTED: transportin-3-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356512772\|ref\|XP_003525090.1\| PREDICTED: transportin-3-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|255540833\|ref\|XP_002511481.1\| transportin, putative [Ricinus communis] gi\|223550596\|gb\|EEF52083.1\| transportin, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297797229\|ref\|XP_002866499.1\| hypothetical protein ARALYDRAFT_496440 [Arabidopsis lyrata subsp. lyrata] gi\|297312334\|gb\|EFH42758.1\| hypothetical protein ARALYDRAFT_496440 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|42568712|ref|NP_201066.2| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|27311605|gb|AAO00768.1| unknown protein [Arabidopsis thaliana] gi|34365727|gb|AAQ65175.1| At5g62590 [Arabidopsis thaliana] gi|110739500|dbj|BAF01659.1| hypothetical protein [Arabidopsis thaliana] gi|110741326|dbj|BAF02213.1| hypothetical protein [Arabidopsis thaliana] gi|332010246|gb|AED97629.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|357146633\|ref\|XP_003574061.1\| PREDICTED: transportin-3-like [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		757
TAIR\|locus:2154159		958	MOS14 "AT5G62600" [Arabidopsis	0.545	0.431	0.794	5.4e-281
UNIPROTKB\|Q9Y5L0		923	TNPO3 "Transportin-3" [Homo sa	0.454	0.372	0.269	5.9e-51
UNIPROTKB\|A5D7C4		923	TNPO3 "TNPO3 protein" [Bos tau	0.454	0.372	0.266	8.6e-51
MGI\|MGI:1196412		923	Tnpo3 "transportin 3" [Mus mus	0.450	0.369	0.268	3.4e-50
RGD\|1308938		929	Tnpo3 "transportin 3" [Rattus	0.450	0.367	0.268	3.5e-50
UNIPROTKB\|C9J7E5		957	TNPO3 "Uncharacterized protein	0.454	0.359	0.269	6.8e-49
UNIPROTKB\|F1SMQ0		921	TNPO3 "Uncharacterized protein	0.454	0.373	0.269	1.2e-48
ZFIN\|ZDB-GENE-040426-708		923	tnpo3 "transportin 3" [Danio r	0.435	0.357	0.257	1.2e-48
FB\|FBgn0031456		932	Trn-SR "Transportin-Serine/Arg	0.450	0.365	0.276	1.2e-46
CGD\|CAL0001884		959	MTR10 [Candida albicans (taxid	0.520	0.410	0.255	3.4e-41

TAIR\|locus:2154159 MOS14 "AT5G62600" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1688 (599.3 bits), Expect = 5.4e-281, Sum P(2) = 5.4e-281
 Identities = 328/413 (79%), Positives = 367/413 (88%)

Query:     1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFC 60
             ME QN VKEALNALYHHPDD VR+ ADRWLQ+FQ T+DAWQVADNLLHD++SNLETLIFC
Sbjct:     1 MEHQNAVKEALNALYHHPDDTVRVHADRWLQNFQGTLDAWQVADNLLHDSSSNLETLIFC 60

Query:    61 SQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAED 120
             SQTLRSKVQRD EELP  A + L+ SL TLLKKFHKGPPKVRTQISIAVAALAVH+ A D
Sbjct:    61 SQTLRSKVQRDFEELPPGAFQKLRQSLTTLLKKFHKGPPKVRTQISIAVAALAVHVPAAD 120

Query:   121 WGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEV 180
             WG GGI++WLRDEM+ HPE+VPGFLELLTVLPEE FNYKIAARP+RRRQFEKELTSQME 
Sbjct:   121 WGDGGIISWLRDEMHMHPEYVPGFLELLTVLPEETFNYKIAARPDRRRQFEKELTSQMEA 180

Query:   181 ALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV 240
             ALS L+ACL I+ELKEQVLEAFASWLRL+H IPG+VLA HPLV  ALSSL+ + LSEASV
Sbjct:   181 ALSILSACLKISELKEQVLEAFASWLRLRHGIPGTVLACHPLVHAALSSLNCDPLSEASV 240

Query:   241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300
             NVISELIH++A+ SSGG +   PLIQVIVPQI+SL+AHL DSSKDEEDVKAI RLFAD+G
Sbjct:   241 NVISELIHHTASPSSGGISAQTPLIQVIVPQILSLQAHLRDSSKDEEDVKAIGRLFADVG 300

Query:   301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA 360
             DSYVELIATGSDE M+IVHALLEV +HPE+DIASMTFNFWHSLQ++LTKR+SY S G+EA
Sbjct:   301 DSYVELIATGSDEPMVIVHALLEVTAHPEFDIASMTFNFWHSLQLMLTKRESYSSLGSEA 360

Query:   361 SAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLA 413
             S E ER+RRL +F+ AY+SLVSLV FRVQYP+DYQ LS EDLKEFK TRY +A
Sbjct:   361 SIEVERNRRLHIFQPAYQSLVSLVGFRVQYPEDYQGLSYEDLKEFKQTRYAVA 413

GO:0005634 "nucleus" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0043484 "regulation of RNA splicing" evidence=IMP

UNIPROTKB\|Q9Y5L0 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7C4 TNPO3 "TNPO3 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1196412 Tnpo3 "transportin 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1308938 Tnpo3 "transportin 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|C9J7E5 TNPO3 "Uncharacterized protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SMQ0 TNPO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-708 tnpo3 "transportin 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

FB\|FBgn0031456 Trn-SR "Transportin-Serine/Arginine rich" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

CGD\|CAL0001884 MTR10 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		757
pfam08389		147	pfam08389, Xpo1, Exportin 1-like protein	3e-18
COG5101		1053	COG5101, CRM1, Importin beta-related nuclear trans	2e-05
smart00913		67	smart00913, IBN_N, Importin-beta N-terminal domain	9e-04

>gnl\|CDD\|219817 pfam08389, Xpo1, Exportin 1-like protein	Back alignment and domain information

 Score = 81.5 bits (202), Expect = 3e-18
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 11/152 (7%)

Query: 98  PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157
           P  +R ++++A+A LA      +W        L   ++S P      L +L VLPEE+F+
Sbjct: 1   PKFIRNKLALALAELAKQEWPSNWPT--FFPDLVSLLSSSPSGCELLLRILKVLPEEIFD 58

Query: 158 Y-KIAARPERRRQFEKELTSQMEVALSTLTACLHIN-----ELKEQVLEAFASWLRLKHR 211
           + +     +RR + +  L SQM   L  L   L  +     EL    L+   SWL     
Sbjct: 59  FSRTPLTQQRRNRLKDLLRSQMPQILELLLQILENSVSAHSELLSATLKCLGSWLS---W 115

Query: 212 IPGSVLASHPLVLTALSSLHSEILSEASVNVI 243
           IP  ++ + PL+      L    L EA+V  +
Sbjct: 116 IPIGLILNDPLLNLLFQLLSDPDLREAAVECL 147

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147

>gnl\|CDD\|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|197981 smart00913, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		757
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	100.0
KOG2081		559	consensus Nuclear transport regulator [Intracellul	100.0
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	100.0
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	100.0
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.96
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	99.95
COG5656		970	SXM1 Importin, protein involved in nuclear import	99.95
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.8
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	99.78
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	99.75
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	99.73
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	99.61
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.34
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	99.24
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	99.1
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.88
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.87
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.62
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.62
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	98.34
KOG1242		569	consensus Protein containing adaptin N-terminal re	98.29
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	97.86
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.55
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	97.31
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.11
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.88
PTZ00429		746	beta-adaptin; Provisional	96.69
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	96.67
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.66
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	96.46
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.33
KOG2956		516	consensus CLIP-associating protein [General functi	96.2
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	96.15
KOG0212		675	consensus Uncharacterized conserved protein [Funct	96.05
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	96.05
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.93
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.86
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	95.86
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.63
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	95.5
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.45
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	95.38
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.29
KOG0212		675	consensus Uncharacterized conserved protein [Funct	94.92
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	94.75
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	94.57
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	94.22
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	94.18
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	94.12
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	94.07
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	94.0
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	93.19
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.01
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	92.55
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	92.08
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	91.69
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	91.45
PRK09687		280	putative lyase; Provisional	91.3
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	91.23
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	91.04
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	90.91
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	90.85
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	90.67
PF11865		160	DUF3385: Domain of unknown function (DUF3385); Int	90.55
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	90.42
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	90.38
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	90.16
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	90.15
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	89.61
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	88.7
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	87.99
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	87.91
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	87.87
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	87.85
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	87.37
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	87.02
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	86.67
KOG4653		982	consensus Uncharacterized conserved protein [Funct	86.49
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	85.94
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	84.57
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	84.26
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	83.5
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	82.9
PF08623		169	TIP120: TATA-binding protein interacting (TIP20);	82.86
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	82.41
KOG2256		661	consensus Predicted protein involved in nuclear ex	82.08
PRK09687		280	putative lyase; Provisional	80.92
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	80.76

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=4.1e-69  Score=574.13  Aligned_cols=701  Identities=20%  Similarity=0.326  Sum_probs=569.6

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 004389            4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL   83 (757)
Q Consensus         4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~l   83 (757)
                      ++.|++++..+|++++++..+.+++||++.|.+|.+|.+.++||+. ++..++|||||.||+.||+++|++++++++..|
T Consensus         6 Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~~~~e~~~~~~~~qL   84 (982)
T KOG2022|consen    6 IATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP-DKSSEVQYFGALTLHDKINTRWEECPANEAVQL   84 (982)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHHhhhccCChhHHHHH
Confidence            8999999999999999999999999999999999999999999985 678899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC--CC-----CchhHHHHHhhhchhhcc
Q 004389           84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS--HP-----EFVPGFLELLTVLPEEVF  156 (757)
Q Consensus        84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~--~~-----~~~~~~L~~L~~L~ee~~  156 (757)
                      |..++..+..++.+|+.|.+|+|.++|.+.+++.++.||+  .+.+++..++.  +|     -++..+|+.|+.+|+|..
T Consensus        85 ~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~--ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~q  162 (982)
T KOG2022|consen   85 KLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPT--AIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEFQ  162 (982)
T ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCc--hHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhhh
Confidence            9999999999998999999999999999999998899999  78888877765  33     256789999999999988


Q ss_pred             cccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh----------HHHHHHHHHHHHHhhccCCCCCcccccchhHHHH
Q 004389          157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTA  226 (757)
Q Consensus       157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----------~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~  226 (757)
                      ...+  +-.||..++.+|......+..++..++...          ..+..+++|+..|+.+. ..+.  ..-..+++.+
T Consensus       163 ~~~l--~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i-~~~~--~~c~~i~~~l  237 (982)
T KOG2022|consen  163 HVTL--PLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI-SLTG--MDCDQITQVL  237 (982)
T ss_pred             hccc--hhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh-cccc--ccHHHHHHHH
Confidence            6554  456788999999999999988888777653          24567999999999953 2332  2234556666


Q ss_pred             HhccCC--cchHHHHHHHH---HHHh---------hhhccCCCCCCCCc---hhHHHHHHHHHHh----hHHHhcccCCC
Q 004389          227 LSSLHS--EILSEASVNVI---SELI---------HYSAAGSSGGATVN---MPLIQVIVPQIMS----LKAHLTDSSKD  285 (757)
Q Consensus       227 ~~~L~~--~~~~~~a~~~l---~~ii---------~~~~~~~~~~~~~~---~~~~~~l~~~v~~----l~~~~~~~~~d  285 (757)
                      ++.++.  ....+++-+|+   ...+         .....+   +...+   ...+-.++.+.++    ..+...+++..
T Consensus       238 l~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~---d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~  314 (982)
T KOG2022|consen  238 LDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQP---DCEFYRNTITLLISICLGILQEVSGKIQEEENADAS  314 (982)
T ss_pred             HHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcCh---HHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence            665541  11122221111   1111         100000   00011   1112222222221    11112233333


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHcCC------chhHHHHHHHhcccccCc-----cchhhhhHHHHHHHHHHHhcccCcc
Q 004389          286 EEDVKAIARLFADMGDSYVELIATGS------DESMLIVHALLEVASHPE-----YDIASMTFNFWHSLQVILTKRDSYI  354 (757)
Q Consensus       286 ~~~~~~~~~l~~~~~~~~~~~i~~~~------~~~~~~l~~ll~~~~~~~-----~~v~~~~l~fW~~l~~~~~~~~~~~  354 (757)
                      +|....++++++..++++.+.+.++.      +.+.++++.++.+++.|+     +.+|..++.||+++.+++....   
T Consensus       315 ~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~---  391 (982)
T KOG2022|consen  315 EEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTI---  391 (982)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhh---
Confidence            67778999999999999888775422      346789999999999884     5689999999999999876421   


Q ss_pred             ccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCC--CCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhH
Q 004389          355 SFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADV  432 (757)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~  432 (757)
                         ++.    .+.+.+..-+|+|.+++++++.|+.+|++  +.+|+.|+.+.|+.||++                 ++|+
T Consensus       392 ---~e~----~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~d-----------------iSD~  447 (982)
T KOG2022|consen  392 ---NET----QQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKD-----------------ISDL  447 (982)
T ss_pred             ---hcc----CCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHH-----------------HHHH
Confidence               111    11223333349999999999999999975  668999999999999999                 9999


Q ss_pred             HHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCC---ChHHHH
Q 004389          433 LIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP---QQPQLL  509 (757)
Q Consensus       433 l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~---~~~~l~  509 (757)
                      +.++|.++| +..+..+++.+.+.+..+...+.+|.+.|+++|++.++++.+..+++..++.+++...+.+   .+|.+.
T Consensus       448 ~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~  526 (982)
T KOG2022|consen  448 LMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLL  526 (982)
T ss_pred             HHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHH
Confidence            999999999 8899999999998876544346789999999999999999999999999999999876554   289999


Q ss_pred             HHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCC
Q 004389          510 QTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGS  589 (757)
Q Consensus       510 ~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~  589 (757)
                      .|+..+||.++.|+..||.   ++++.++.+++++++++ ....|...+.++|++|+.+|.||+++++..+..++..+  
T Consensus       527 ~Tss~~igs~s~~l~e~P~---~ln~sl~~L~~~Lh~sk-~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~--  600 (982)
T KOG2022|consen  527 STSSDLIGSLSNWLGEHPM---YLNPSLPLLFQGLHNSK-ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKS--  600 (982)
T ss_pred             HHHHHHHHHHHHHHhcCCc---ccCchHHHHHHHhcCch-HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccc--
Confidence            9999999999999999997   99999999999999888 78888888999999999999999999999999998753  


Q ss_pred             CCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCC--
Q 004389          590 LKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHP--  667 (757)
Q Consensus       590 ~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--  667 (757)
                       ...+.++.++|.+||.|++...+|++.+|+.++++|++..++.++....+.+.  ........+++++.+|.++..+  
T Consensus       601 -~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e--~~l~~~~~l~~iS~LftSL~~~~~  677 (982)
T KOG2022|consen  601 -NAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQE--NHLRIAFQLNTISALFTSLINKKD  677 (982)
T ss_pred             -ccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHH--HHHHHHHHHHHHHHHHhccCCCCc
Confidence             57789999999999999999999999999999999999999999876554321  1223445678999999997521  


Q ss_pred             ----------------cchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHhh
Q 004389          668 ----------------EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM-GITIGAILEEIQGLYQQ  730 (757)
Q Consensus       668 ----------------~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~-~p~l~~~~~~l~~~~~~  730 (757)
                                      -|++.+.++++|++..+++.|-++.+++|.+|...++.++.+++.| .|++|.+++++.. |.+
T Consensus       678 ~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~  756 (982)
T KOG2022|consen  678 IIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLT  756 (982)
T ss_pred             cccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hcc
Confidence                            2678899999999999999999999999999999999999999888 8999999999999 999


Q ss_pred             cCCcchHhhHHHHHHHhCCcccc
Q 004389          731 HQQPCFLYLSSEVIKVVFPPEVL  753 (757)
Q Consensus       731 ~~~~~~l~~~~~~i~~f~~~~~~  753 (757)
                      .+...-+.+...++..|..+|.+
T Consensus       757 ~~~a~tl~l~~~~l~~~~~~~~~  779 (982)
T KOG2022|consen  757 SCLAVTLSLIAACLLAKSTVEQC  779 (982)
T ss_pred             chHHHHHHHHHHHHHhhhccccc
Confidence            89988999999999988877764

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		757
2xwu_B		963	Crystal Structure Of Importin 13 - Ubc9 Complex Len		6e-22
2x1g_F		971	Crystal Structure Of Importin13 - Mago-Y14 Complex		1e-19
2x19_B		963	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-17

>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex Length = 963

Back alignment and structure

Iteration: 1

Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 150/661 (22%), Positives = 287/661 (43%), Gaps = 83/661 (12%) Query: 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLH-DATSNLETLIFCSQTL 64 V++AL+ LY+ P+ + A +WL Q + AW + LL D ++ F + L Sbjct: 25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQ--YFGASAL 82 Query: 65 RSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDW--G 122 K+ R ++P++ L+ L T + +F G V T++ +A+A+LA+ + + W Sbjct: 83 HIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCA 142 Query: 123 GGGIVNWLRDEMNSHPEFVPG------FLELLTVLPEEVFNYKIAARPERRRQFEK-ELT 175 +V + E + V G LELLTVLPEE ++ + P+ R+ + L Sbjct: 143 VADMVRLFQAEDSP----VDGQGRCLALLELLTVLPEE---FQTSRLPQYRKGLVRTSLA 195 Query: 176 SQMEVALSTLTACLHINE----LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLH 231 + L L ++++VL+ F+SW++L+ +P + L+ A ++L Sbjct: 196 VECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQ 251 Query: 232 SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDV 289 L ++SV I I S A + + ++P ++ L+ L + + D E Sbjct: 252 DSELFDSSVEAIVNAI------SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETS 305 Query: 290 KAIARLFADMGDSYVELIATGSD--ESML-IVHALLEVASHPEY-----DIASMTFNFWH 341 I R+ +G+++ + + +S L +V+ ++ P + +S+T FW+ Sbjct: 306 HGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWY 365 Query: 342 SLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSL 399 +LQ D +SF E A + QV+R Y LV ++ + Q+P D Y S Sbjct: 366 TLQ------DDILSFEAEKQAVYQ-----QVYRPVYFQLVDVLLHKAQFPSDEEYGFWSS 414 Query: 400 EDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVAC 459 ++ ++F+ R D ++D L+ +LG + L LY K + Sbjct: 415 DEKEQFRIYRVD-----------------ISDTLMYVYEMLGAE-LLSNLYDKLGRLLTS 456 Query: 460 CGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAXXXXXXXXXXXXX-TVCLTIGA 518 ++ W+ EA L+ ++I+ + V ++V+P ++ TV TIGA Sbjct: 457 SEEPYS-WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGA 515 Query: 519 YSKWFDAASSDPSILASVLSILTSGMSTSEDTXXXXXXXFRHICDDCRKKLCGYLDGLYN 578 S+W + P ++ SVL ++ + E + IC +C+ L Y + Sbjct: 516 LSEWL---ADHPVMINSVLPLVLHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVA 571 Query: 579 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQG 638 V + + + + L++AL +++ L + K L L P + L+++ + Sbjct: 572 VSQDVLMKQIH---KTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI 628 Query: 639 P 639 P Sbjct: 629 P 629

PyMOL of 2xwu

>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971

Back alignment and structure

>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex Length = 963

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		757
2x19_B		963	Importin-13; nuclear transport, protein transport;	1e-101
2x1g_F		971	Cadmus; transport protein, developmental protein,	5e-94
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	1e-74
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	1e-66
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	3e-63
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	1e-42
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	1e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	4e-11
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	2e-06
1qgr_A		876	Protein (importin beta subunit); transport recepto	2e-05
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	2e-04

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

 Score =  333 bits (855), Expect = e-101
 Identities = 157/778 (20%), Positives = 324/778 (41%), Gaps = 84/778 (10%)

Query: 5   NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTL 64
             V++AL+ LY+ P+   +  A +WL   Q +  AW  +  LL       E   F +  L
Sbjct: 24  ENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP-DKVPEIQYFGASAL 82

Query: 65  RSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGG- 123
             K+ R   ++P++    L+  L T + +F  G   V T++ +A+A+LA+ +  + W   
Sbjct: 83  HIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCA 142

Query: 124 -GGIVNWLR--DEMNSHPEFVPGFLELLTVLPEEVFNYKI--AARPERRRQFEKELTSQM 178
              +V   +  D            LELLTVLPEE    ++    +   R     E  +  
Sbjct: 143 VADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVF 202

Query: 179 EVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEA 238
            +    L      + ++++VL+ F+SW++L+  +         L+  A ++L    L ++
Sbjct: 203 PLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQ----DCEALIQAAFAALQDSELFDS 258

Query: 239 SVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAIARLF 296
           SV  I   I      S   A   +  +  ++P ++ L+  L  +  + D E    I R+ 
Sbjct: 259 SVEAIVNAI------SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIA 312

Query: 297 ADMGDSYVELIATGSDES---MLIVHALLEVASHPEY-----DIASMTFNFWHSLQVILT 348
             +G+++   +    +     + +V+ ++     P +       +S+T  FW++LQ  + 
Sbjct: 313 VALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDIL 372

Query: 349 KRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFK 406
             ++            +++   QV+R  Y  LV ++  + Q+P D  Y   S ++ ++F+
Sbjct: 373 SFEAE-----------KQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFR 421

Query: 407 HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNE 466
             R D                 ++D L+    +LG +  L  LY K    +     +   
Sbjct: 422 IYRVD-----------------ISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSS-EEPYS 462

Query: 467 WRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQ-PQLLQTVCLTIGAYSKWFDA 525
           W+  EA L+  ++I+  + V  ++V+P ++ L+P++     QL  TV  TIGA S+W   
Sbjct: 463 WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL-- 520

Query: 526 ASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585
            +  P ++ SVL ++   +   E  + ++    + IC +C+  L  Y   +  V +  + 
Sbjct: 521 -ADHPVMINSVLPLVLHALGNPEL-SVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLM 578

Query: 586 GEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK 645
            +          + L++AL  +++ L   +  K L  L  P +  L+++  + P    K 
Sbjct: 579 KQ---IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKL 635

Query: 646 HPRDLTVHIDRFAYIFRYVNH-----------------PEAVADAIQRLWPIFKAIFDIR 688
               +   +          +H                 P  V   +Q+++ + + +    
Sbjct: 636 AIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKW 695

Query: 689 AWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKV 746
             D + +E++C   + +V+T        +  + E +  +Y    Q   L L+ +++ +
Sbjct: 696 LNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHI 753

PyMOL of 2x19

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		757
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	100.0
2x1g_F		971	Cadmus; transport protein, developmental protein,	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	100.0
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	100.0
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	100.0
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1qgr_A		876	Protein (importin beta subunit); transport recepto	100.0
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.94
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.76
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.59
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.53
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.45
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.41
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.27
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.17
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	98.59
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	98.54
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.53
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.42
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.35
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	98.11
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.02
2x1g_F		971	Cadmus; transport protein, developmental protein,	97.99
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.68
2x19_B		963	Importin-13; nuclear transport, protein transport;	97.49
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.44
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	97.41
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.24
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	97.1
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	97.05
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	97.0
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.95
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	96.82
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	96.79
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	96.6
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	96.57
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.28
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	96.24
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	96.13
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.1
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.07
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	96.02
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	96.01
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	95.94
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	95.82
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	95.77
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	95.07
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	95.0
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	94.93
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	94.58
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	94.44
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	94.22
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	93.98
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	93.96
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	93.92
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	93.28
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	92.66
3u0r_A		507	Apoptosis inhibitor 5; heat repeat, armadillo repe	92.38
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	92.04
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	91.98
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	91.77
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	91.59
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	91.19
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	90.97
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	86.11
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	83.49
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	83.25
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	81.65
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	81.45
3oc3_A		800	Helicase MOT1, MOT1; regulation of transcription,	81.33
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	80.58

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

Probab=100.00  E-value=1.4e-79  Score=731.23  Aligned_cols=693  Identities=14%  Similarity=0.215  Sum_probs=564.2

Q ss_pred             hHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhcCCCCCChh--
Q 004389            3 LQNTVKEALNALYH-HPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATS-NLETLIFCSQTLRSKVQRDVEELPSE--   78 (757)
Q Consensus         3 ~~~~v~~al~~ly~-~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~-~~~vr~faa~~L~~ki~~~w~~l~~e--   78 (757)
                      +.++|.+||+..|+ ++|++.|++|++||++||++|++|.+|..+|.+++. +.++||||+++|+++|+    .++++  
T Consensus         4 ~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~   79 (980)
T 3ibv_A            4 SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESN   79 (980)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTS
T ss_pred             CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhh
Confidence            36899999965554 458999999999999999999999999999986433 78999999999999999    78999  


Q ss_pred             --hHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCC--chhHHHHHhhhch
Q 004389           79 --AVRGLQDSLNTLLKKFH--KGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPE--FVPGFLELLTVLP  152 (757)
Q Consensus        79 --~~~~lr~~Ll~~l~~~~--~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~~--~~~~~L~~L~~L~  152 (757)
                        ++..+|+.|++++.+.+  .+|++||+|+|.+++.++++++|..||+  +++++++.+++++.  ....+|++|..|+
T Consensus        80 ~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~--~i~~l~~~~~~~~~~~~~~~~LriL~~i~  157 (980)
T 3ibv_A           80 LLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWND--FFASLQGVIAASSQSEFSNFYLKVLLSIG  157 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCch--HHHHHHHHhcCCChhHHHHHHHHHHHHhH
Confidence              99999999999999854  4688999999999999999999999999  99999998875322  3456677777777


Q ss_pred             hhcccccccCCh---HHHHHHHHHHHHh-----HHHHHHHHHHhhh--hhHHHHHHHHHHHHHhhccCCCCCcccccchh
Q 004389          153 EEVFNYKIAARP---ERRRQFEKELTSQ-----MEVALSTLTACLH--INELKEQVLEAFASWLRLKHRIPGSVLASHPL  222 (757)
Q Consensus       153 ee~~~~~~~~~~---~~r~~l~~~l~~~-----~~~vl~~l~~~l~--~~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~l  222 (757)
                      ||+.+.++..++   .|+.++++.|...     .+.+++++.++.+  ++++...+|+|+.+|+.|   +|.+.+.+.++
T Consensus       158 EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~l  234 (980)
T 3ibv_A          158 DEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW---ININLIVNEPC  234 (980)
T ss_dssp             HHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHH
T ss_pred             HHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh---cCHHhhhcchH
Confidence            999876544433   4566788888766     6666777777654  346889999999999997   77777778999


Q ss_pred             HHHHHhccCCcchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHh---cccCCCHHHHHHHHHHHHHH
Q 004389          223 VLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHL---TDSSKDEEDVKAIARLFADM  299 (757)
Q Consensus       223 l~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~---~~~~~d~~~~~~~~~l~~~~  299 (757)
                      ++.+|+.|.+++++++|++||++++++++.     ++++.+++..+     .+.+.+   ..+++|.|..+++|++++++
T Consensus       235 l~~l~~~L~~~~~r~~A~ecL~ei~~k~~~-----~~~k~~li~~l-----~L~~~~~~l~~~~~D~d~~~~la~L~~~~  304 (980)
T 3ibv_A          235 MNLLYSFLQIEELRCAACETMTEIVNKKMK-----PLEKLNLLNIL-----NLNLFFSKSQEQSTDPNFDEHVAKLINAQ  304 (980)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHH-----HHHHHHCC-----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHcCCC-----hhhHHHHHHHH-----hHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            999999999999999999999999998763     33556666543     222222   22257889999999999999


Q ss_pred             hhHHHHHHHcCC------------chhHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHH
Q 004389          300 GDSYVELIATGS------------DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERS  367 (757)
Q Consensus       300 ~~~~~~~i~~~~------------~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~  367 (757)
                      |+.+... .+.+            +.+..+++++|.+++|++++|+..+++||+.+.+...+.++             +.
T Consensus       305 ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~-------------~~  370 (980)
T 3ibv_A          305 GVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESS-------------SK  370 (980)
T ss_dssp             HHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTT-------------SC
T ss_pred             HHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccc-------------cc
Confidence            9999888 6555            34568899999999999999999999999998876643210             00


Q ss_pred             HHHHhhHHHHHHHHHHHHhhccCCCCCCCCCh----hhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChh
Q 004389          368 RRLQVFRSAYESLVSLVSFRVQYPQDYQDLSL----EDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGD  443 (757)
Q Consensus       368 ~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~----d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~  443 (757)
                      .....++|++.+|++++++||+||++. +|++    ||.++|.+||++                 ++ .+.+++.++|++
T Consensus       371 ~~~~~~~~~l~~Ll~~li~k~~yp~d~-~~~~~~d~ed~~~F~e~Rk~-----------------l~-~l~d~~~~l~~~  431 (980)
T 3ibv_A          371 ELSASLKEFLKSLLEAIIKKMKYDESQ-EWDDDPDSEEEAEFQEMRKK-----------------LK-IFQDTINSIDSS  431 (980)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCTTC-CCCCCSSSSTHHHHHHHHHH-----------------HH-HHHHHHHHHCHH
T ss_pred             cccHHHHHHHHHHHHHHHHHccCCCcc-ccccccchhHHHHHHHHHHH-----------------HH-HHHHHHHhcChH
Confidence            123578999999999999999999874 3543    667899999999                 88 899999999999


Q ss_pred             HHHHHHHHHHHHhHhhCC--CCCCCcchhhHHHHHHHHhhcccCcc------ccccHHHHHhhcCC-----C--CChHHH
Q 004389          444 ATLKILYIKFVEGVACCG--NKHNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPK-----L--PQQPQL  508 (757)
Q Consensus       444 ~~l~~l~~~l~~~~~~~~--~~~~~w~~~Ea~l~~l~~ia~~~~~~------~~~~l~~l~~~l~~-----l--~~~~~l  508 (757)
                      .++.++++.+...+.+..  ..+.+|+.+||+||+++++||++...      .++.+|++++++..     +  +.||.|
T Consensus       432 ~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V  511 (980)
T 3ibv_A          432 LFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLV  511 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHH
Confidence            999955555554432211  11357999999999999999998852      23456666665432     2  459999


Q ss_pred             HHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh--ccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhh
Q 004389          509 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTS--GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN  585 (757)
Q Consensus       509 ~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~--~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~  585 (757)
                      |.++|+++|||++|+..||+   ++++++++++.  |+++++ +|+.+||+||.+||++|+++|.||++.|++.+.+++.
T Consensus       512 ~~~~~~~l~rys~~~~~~~~---~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~  588 (980)
T 3ibv_A          512 QLLYMEILVRYASFFDYESA---AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN  588 (980)
T ss_dssp             HHHHHHHHHHTGGGGGTCCT---THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred             HHHHHHHHHHHHHHHhcCch---hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence            99999999999999999997   99999999999  998764 5999999999999999999999999999999999887


Q ss_pred             CcCCC-CC---------------ChhhHHHHHHHHHHHHhcC--ChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccC-
Q 004389          586 GEGSL-KV---------------SAEDSLHLVEALSMVITEL--PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH-  646 (757)
Q Consensus       586 ~~~~~-~l---------------~~~~~~~l~eai~~vi~~~--~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~-  646 (757)
                      ..... .-               ..+++.+++||+|.+++..  |.|+...++..++.|++++++++++....+.++.. 
T Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~  668 (980)
T 3ibv_A          589 ISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIIS  668 (980)
T ss_dssp             CCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHH
T ss_pred             CcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHH
Confidence            32100 00               1347999999999999875  57788899999999999999999976543321111 


Q ss_pred             cchhhHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 004389          647 PRDLTVHIDRFAYIFRYVNH-PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQ  725 (757)
Q Consensus       647 ~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~  725 (757)
                      ..+...+++++++.|+..+. ++|+..++.++|+++..+++.|+++..|+|++|.+++++++++|.++.|++|++++.++
T Consensus       669 i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll  748 (980)
T 3ibv_A          669 VYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL  748 (980)
T ss_dssp             HHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH
Confidence            11234456777777665432 46788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCcchHhhHHHHHHHhCCc
Q 004389          726 GLYQQHQQPCFLYLSSEVIKVVFPP  750 (757)
Q Consensus       726 ~~~~~~~~~~~l~~~~~~i~~f~~~  750 (757)
                      ..|+.+++++||++++++|++||++
T Consensus       749 ~~~~~~e~~~fL~l~~qli~~f~~~  773 (980)
T 3ibv_A          749 NSIDMNELVDVLSFISQLIHIYKDN  773 (980)
T ss_dssp             HHCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987

PyMOL of 3ibv

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		757
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-14
d1wa5c_		959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	4e-13
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	8e-09
d1qgra_		876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	4e-04
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	0.001

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (184), Expect = 1e-14
 Identities = 81/650 (12%), Positives = 182/650 (28%), Gaps = 82/650 (12%)

Query: 4   QNTVKEALNAL--YHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATS-NLETLIFC 60
           +  +++ L  L     PD  ++    + L+      D       +L    S +  T    
Sbjct: 7   EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLS 66

Query: 61  SQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAED 120
              L++ V+   +  P+     ++      L       P +R  + I +  +A     ++
Sbjct: 67  GLILKNNVKAHFQNFPNGVTDFIKSE---CLNNIGDSSPLIRATVGILITTIASKGELQN 123

Query: 121 WGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEV 180
           W                P+ +P    LL                              E 
Sbjct: 124 W----------------PDLLPKLCSLLDSEDYNT----------------------CEG 145

Query: 181 ALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV 240
           A   L       ++ E   E   S       +   +    P  L        +I S A  
Sbjct: 146 AFGAL------QKICEDSAEILDS-----DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVA 194

Query: 241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300
            V   +I  + A         M  I      + +L        ++ E  K + R    + 
Sbjct: 195 CVNQFIISRTQA--------LMLHIDSFTENLFAL-----AGDEEPEVRKNVCRALVMLL 241

Query: 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA 360
           +  ++ +       +  +    +     + ++A     FW +L      +D  +    + 
Sbjct: 242 EVRMDRLLPHMHNIVEYML---QRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL 298

Query: 361 SAEAERSRRLQVFRSAY-ESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSST 419
                   +         +  V          QD +          +    D        
Sbjct: 299 IPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDD 358

Query: 420 LTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRA 479
             E      ++D  +   S    D    +   + +  +     +             I  
Sbjct: 359 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 418

Query: 480 ISTYVSVVEAEVMPQVMALLPKL-----PQQPQLLQTVCLTIGAYSKWFDAASSDPSILA 534
           +          ++P +  L+P L      ++  +    C T+  Y+ W  +   D  +  
Sbjct: 419 LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP 478

Query: 535 SVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSA 594
            +  +L   + +++    AA  AF  + ++   +L  YL  + +    A +     K   
Sbjct: 479 LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS-----KYQH 533

Query: 595 EDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQK 644
           ++ L L +A+  +   +     K     + +P +     ++    + L  
Sbjct: 534 KNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFP 583

PyMOL of d1qbkb_

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		757
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	100.0
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.97
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.97
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.4
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.16
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.11
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.97
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.89
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.65
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.43
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.03
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.49
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	96.73
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.24
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	92.48
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	92.16
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	90.7
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	90.25
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	89.83
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	89.83
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	89.73

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=353.90  Aligned_cols=628  Identities=13%  Similarity=0.168  Sum_probs=396.0

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhc-CCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 004389            5 NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL   83 (757)
Q Consensus         5 ~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~-~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~l   83 (757)
                      +++.+.++.. .++|++.|++|+++|++++++|+.|.++..|+.. .+.+..+|++|+.+|||+|+++|..++++.+..+
T Consensus        11 ~ql~~~L~~~-~s~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~I   89 (888)
T d1qbkb_          11 QQILQLLKES-QSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFI   89 (888)
T ss_dssp             HHHHHHHTTC-CHHHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHHH
T ss_pred             HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence            4455555444 3467899999999999999999999998888874 2346679999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhHHHHHhhhchhhcccccccC
Q 004389           84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEVFNYKIAA  162 (757)
Q Consensus        84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~-~~~~~~~L~~L~~L~ee~~~~~~~~  162 (757)
                      |+.++..+..   .++.||++++.+++.++.+.+++.||+  +++.|.+.+.++ +......+..|..|+|+......  
T Consensus        90 k~~ll~~l~~---~~~~vr~~~~~~i~~i~~~~~~~~Wpe--ll~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~--  162 (888)
T d1qbkb_          90 KSECLNNIGD---SSPLIRATVGILITTIASKGELQNWPD--LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD--  162 (888)
T ss_dssp             HHHHTTGGGC---CCSSTTTTTTTTTHHHHTTTSSCSSTT--TSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHH--
T ss_pred             HHHHHHHHcC---CCHHHHHHHHHHHHHHHHHhCccchHH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhh--
Confidence            9999988754   567899999999999999888899999  999999877643 34556777788888886532100  


Q ss_pred             ChHHHHHHHHHHHHhHHHHHHHHHHhhhhh--HHHHHHHHHHHHHhhccCCCCCccc-ccchhHHHHHhccCC--cchHH
Q 004389          163 RPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVL-ASHPLVLTALSSLHS--EILSE  237 (757)
Q Consensus       163 ~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~l~~wi~~~~~~~~~~l-~~~~ll~~~~~~L~~--~~~~~  237 (757)
                              .+......+.+++.+.+.++++  .++..+++|+..++...   +.... ....+++.++..+.+  ++++.
T Consensus       163 --------~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~vr~  231 (888)
T d1qbkb_         163 --------SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR---TQALMLHIDSFTENLFALAGDEEPEVRK  231 (888)
T ss_dssp             --------TC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCC---CSTTCSHHHHCSHHHHTTSSCCCSSSTT
T ss_pred             --------HHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence                    0112233344455555555543  57778889998887642   21111 123455555655543  35566


Q ss_pred             HHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHH
Q 004389          238 ASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLI  317 (757)
Q Consensus       238 ~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~  317 (757)
                      .+++++..++......                                                     +.   +....+
T Consensus       232 ~~~~~l~~l~~~~~~~-----------------------------------------------------l~---~~l~~i  255 (888)
T d1qbkb_         232 NVCRALVMLLEVRMDR-----------------------------------------------------LL---PHMHNI  255 (888)
T ss_dssp             HHHHTTTTTSCSCTTT-----------------------------------------------------TT---TTTTTT
T ss_pred             HHHHHHHHHHHHhHHH-----------------------------------------------------HH---HHHHHH
Confidence            6666665555422110                                                     00   001112


Q ss_pred             HHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCC---
Q 004389          318 VHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDY---  394 (757)
Q Consensus       318 l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~---  394 (757)
                      ++.++..+.+++++++..+++||..+++....                    ...+.+++.+++..++..+.+++..   
T Consensus       256 ~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~--------------------~~~~~~~l~~l~~~l~~~~~~~~~~~~~  315 (888)
T d1qbkb_         256 VEYMLQRTQDQDENVALEACEFWLTLAEQPIC--------------------KDVLVRHLPKLIPVLVNGMKYSDIDIIL  315 (888)
T ss_dssp             TTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGG--------------------TTTTTTSTTTTTTTTTTSSCCSSTTHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhh--------------------HHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            33334444455556666666666554432110                    0111122222333333333332110   


Q ss_pred             -----CC----------------------------CChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcC
Q 004389          395 -----QD----------------------------LSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLG  441 (757)
Q Consensus       395 -----~~----------------------------~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~  441 (757)
                           +.                            ...++.++..+...+      .....++.|++++.++..+....|
T Consensus       316 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~r~~a~~~L~~l~~~~~  389 (888)
T d1qbkb_         316 LKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDD------DTISDWNLRKCSAAALDVLANVYR  389 (888)
T ss_dssp             HTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCC------STTSCCSSHHHHHHHSTTTTTTCC
T ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhh------hhhhhhhHHHHHHHHHhhHhhhhH
Confidence                 00                            000000000011000      001112345556667766777777


Q ss_pred             hhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcC-CCC-ChHHHHHHHHHHHHhh
Q 004389          442 GDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAY  519 (757)
Q Consensus       442 ~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l~-~~~~l~~t~~~~ig~~  519 (757)
                       +.+++.+.+.+.+.+.     +.+|+.+|+++++++++++++...-.++++++++.+. .+. .+|.||.++++++|+|
T Consensus       390 -~~il~~~l~~l~~~l~-----s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~  463 (888)
T d1qbkb_         390 -DELLPHILPLLKELLF-----HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRY  463 (888)
T ss_dssp             -SSSHHHHHHHHHHTTT-----SSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHhhc-----cchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHH
Confidence             5577878877776542     5789999999999999999887665677888887654 333 4899999999999999


Q ss_pred             HHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHH
Q 004389          520 SKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSL  598 (757)
Q Consensus       520 ~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~  598 (757)
                      ++|+..... ..++..+++.++..+.++. +|+.+|+.||..+++.+...+.||++.+++.+...+..     .....+.
T Consensus       464 ~~~~~~~~~-~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~-----~~~~~~~  537 (888)
T d1qbkb_         464 AHWVVSQPP-DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK-----YQHKNLL  537 (888)
T ss_dssp             HHHHHSSCH-HHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTT-----CCHHHHH
T ss_pred             HHHhhhhhh-hhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhh-----hhHHHHH
Confidence            999976532 1367778888887776643 59999999999999999999999999999999888763     3466777


Q ss_pred             HHHHHHHHHHhcCChHH-HHHHHHHhhhhHHHHHH-------------------------------------------HH
Q 004389          599 HLVEALSMVITELPQVD-AKKALEMLCLPVVTPLQ-------------------------------------------EI  634 (757)
Q Consensus       599 ~l~eai~~vi~~~~~e~-~~~~l~~l~~~~~~~l~-------------------------------------------~~  634 (757)
                      .++++++.++..++... ...+...++.++...++                                           +.
T Consensus       538 ~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~  617 (888)
T d1qbkb_         538 ILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKT  617 (888)
T ss_dssp             HHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHH
Confidence            78888888776643321 11233333222222111                                           11


Q ss_pred             Hhc------CCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 004389          635 INQ------GPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ--RLWPIFKAIFDIRAWDMRTMESLCRACKYAV  706 (757)
Q Consensus       635 ~~~------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~  706 (757)
                      +..      ................++.++.+++.++.  .+.+++.  .+.+++...++.  .+++|++.++.+++.+.
T Consensus       618 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~--~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~a~~llgdl~  693 (888)
T d1qbkb_         618 LAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG--NIEQLVARSNILTLMYQCMQD--KMPEVRQSSFALLGDLT  693 (888)
T ss_dssp             HHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTT--TTHHHHHTSCHHHHHHHHHTC--SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhh--hhhhhhhHhhHHHHHHHHhCC--CChHHHHHHHHHHHHHH
Confidence            000      00000000011122345556666655542  2333332  356666666643  46899999999999999


Q ss_pred             HHhhhhhhhhHHHHHHHHHHHHhhcCC---cchHhhHHHHHHHhCC
Q 004389          707 RTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKVVFP  749 (757)
Q Consensus       707 ~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~~~~~~i~~f~~  749 (757)
                      +.++.++.|+++.+++.+...+.....   ...+|+++.++...|+
T Consensus       694 ~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~  739 (888)
T d1qbkb_         694 KACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI  739 (888)
T ss_dssp             HHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGG
T ss_pred             HhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887754321   2356777777776664

PyMOL of d1qbkb_

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure