Citrus Sinensis ID: 004425
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 754 | 2.2.26 [Sep-21-2011] | |||||||
| P93005 | 727 | Pentatricopeptide repeat- | yes | no | 0.901 | 0.935 | 0.335 | 1e-111 | |
| Q9FWA6 | 903 | Pentatricopeptide repeat- | no | no | 0.877 | 0.733 | 0.309 | 1e-103 | |
| Q7XJN6 | 860 | Pentatricopeptide repeat- | no | no | 0.913 | 0.801 | 0.325 | 1e-101 | |
| Q9S7F4 | 825 | Putative pentatricopeptid | no | no | 0.862 | 0.787 | 0.322 | 1e-101 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.868 | 0.615 | 0.310 | 1e-101 | |
| Q0WN60 | 970 | Pentatricopeptide repeat- | no | no | 0.899 | 0.698 | 0.307 | 1e-100 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.897 | 0.796 | 0.306 | 4e-99 | |
| Q9LFI1 | 768 | Pentatricopeptide repeat- | no | no | 0.885 | 0.869 | 0.312 | 1e-98 | |
| Q9STE1 | 857 | Pentatricopeptide repeat- | no | no | 0.900 | 0.792 | 0.310 | 2e-98 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.905 | 0.786 | 0.310 | 1e-97 |
| >sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 232/691 (33%), Positives = 379/691 (54%), Gaps = 11/691 (1%)
Query: 73 DLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIK 132
+L G+AVH ++++G+ AN L+N YAK +L A +F+ ++ + ++W SLI
Sbjct: 29 NLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLIT 88
Query: 133 GYLDDGDYES---VLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSG 189
GY +G S V+ + +M + N +T + I +A S L+ G Q HA +K
Sbjct: 89 GYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMS 148
Query: 190 FENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFV 249
+++V TSL+ MY +G + VF + ++ + M+ Y G E A VF
Sbjct: 149 SFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFN 208
Query: 250 HLLSSDFE--PNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGK 307
L E +DY FT V+S + V G+Q+H + +K G++ +++ NA+VTMY K
Sbjct: 209 LFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSK 268
Query: 308 HGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATV 367
EA +MFD+ +RN I+W+A+++GY ++G +A+ F GI + V
Sbjct: 269 CESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGV 328
Query: 368 IDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYT 427
++ CS LE G QLH F +K G+ + TALVD+YAK G L AR D +
Sbjct: 329 LNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDV 388
Query: 428 AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLH 487
A + +++SG+++ D E+ ++L+ + + AG+ P+ T + +L +S A L G+ +H
Sbjct: 389 ALWTSLISGYVQN--SDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVH 446
Query: 488 AYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGK 547
++IK G+ +V +G+AL TMY+KCGS++ +F+ ++D+VSWNAM+S + +G G
Sbjct: 447 GHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGD 506
Query: 548 GALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACM 607
AL LFEEM EG PDD++ + ++ AC + G E G FN + GL P ++H+ACM
Sbjct: 507 EALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACM 566
Query: 608 VDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667
VDLL RAG+L EA I S+ LWR L+S K + + A ++L+ L +++
Sbjct: 567 VDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRES 626
Query: 668 GSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESE 727
+++ +S +Y G + + +V M +SKE GCSWIE+ ++ H FV HP E
Sbjct: 627 STYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMHPMIE 686
Query: 728 EIYSKLDLLNDEMK----LKVKDSSAFELQD 754
E + L++ +M + V DSS E ++
Sbjct: 687 ETKDLVCLVSRQMIEEGFVTVLDSSFVEEEE 717
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/694 (30%), Positives = 381/694 (54%), Gaps = 32/694 (4%)
Query: 73 DLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIK 132
D LG +H +++ G D A+ L+++YAK R + ++F G+ +++++W+++I
Sbjct: 195 DTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIA 254
Query: 133 GYLDDGDYESVLGIACDMYRSEEKFN----EHTCSVILEACSLLEDRIFGEQIHAFAIKS 188
G + + ++L +A ++ +K N + + +L +C+ L + G Q+HA A+KS
Sbjct: 255 GCVQN----NLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKS 310
Query: 189 GFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVF 248
F + V T+ + MY ++A+ +F + + N MI Y++ A +F
Sbjct: 311 DFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLF 370
Query: 249 VHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKH 308
L+SS ++ + + V C G+ EG Q++GLA+K + ++ V NA + MYGK
Sbjct: 371 HRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKC 430
Query: 309 GMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVI 368
EA R+FD + R+ +SW A+I+ + ++G G + + F+ L I D +++
Sbjct: 431 QALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSIL 490
Query: 369 DGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARML---------- 418
C+ S L G+++H +K G S+ +G +L+D+Y+K G ++ A +
Sbjct: 491 KACTGGS-LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANV 549
Query: 419 ------LDGFSCKYTAE----FNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFS 468
L+ K E +N+I+SG++ K + ED +LF++ G+ PD T++
Sbjct: 550 SGTMEELEKMHNKRLQEMCVSWNSIISGYVMK--EQSEDAQMLFTRMMEMGITPDKFTYA 607
Query: 469 RLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR 528
+L A+ A G+ +HA IK +DV + + L+ MY+KCG + + +F+ R
Sbjct: 608 TVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRR 667
Query: 529 DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLF 588
D V+WNAM+ YA HG G+ A+ LFE M E P+ ++ + +L+AC + GL + G+ F
Sbjct: 668 DFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYF 727
Query: 589 NEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMAN 648
+++ YGL P L H++ MVD+LG++G++ A+ LI PF ++WRTL+ V + N
Sbjct: 728 YMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRN 787
Query: 649 S-KFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWI 707
+ + + A+ LL L+P+D+ ++ L+SN+YA GM ++ + +R M +L KE GCSW+
Sbjct: 788 NVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWV 847
Query: 708 EIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMK 741
E+ +LH F+ K HP EEIY +L L+ EMK
Sbjct: 848 ELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMK 881
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720 OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust.
Identities = 229/704 (32%), Positives = 378/704 (53%), Gaps = 15/704 (2%)
Query: 49 VSCSERTLLFNDWPQLVKISI--------GSGDLKLGQAVHAFLLKSGSQNDTFEANNLI 100
V C R L+F P +SI G+ + G+ +H F+L++ D+F LI
Sbjct: 153 VGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALI 212
Query: 101 NLYAKFNRLDVAQKLFDGMLVRS-AITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNE 159
++Y KF A ++F + +S + W +I G+ G ES L + + K
Sbjct: 213 DMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVS 272
Query: 160 HTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRG 219
+ + L ACS E+ FG QIH +K G N+ +V TSL+SMY G EAE VF
Sbjct: 273 TSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSC 332
Query: 220 LAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEE- 278
+ K + N M+ Y + A +F + P+ +T +NVIS C LG+
Sbjct: 333 VVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCC-SVLGLYNY 391
Query: 279 GKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVR 338
GK +H K + ++ +A++T+Y K G +A +F ++ E+++++W +LISG +
Sbjct: 392 GKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCK 451
Query: 339 SGHGGKAINGF--LEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDV 396
+G +A+ F ++ D + DS + +V + C+ L GLQ+HG IK G + +V
Sbjct: 452 NGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNV 511
Query: 397 RLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQR 456
+G++L+D+Y+K G + A + S + +N+++S + + E + LF+
Sbjct: 512 FVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRN--NLPELSIDLFNLML 569
Query: 457 LAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSID 516
G+ PD V+ + +L +S A L++G+SLH Y+++ G +D + NALI MY KCG
Sbjct: 570 SQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSK 629
Query: 517 GAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACI 576
A IFK + + +++WN M+ Y HG AL LF+EMK+ G +PDD++ L ++ AC
Sbjct: 630 YAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACN 689
Query: 577 YSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLW 636
+SG E G +F ++Q YG+ P +EH+A MVDLLGRAG L EA + I + P +W
Sbjct: 690 HSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIW 749
Query: 637 RTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696
L+S S+ N + IL++++LL +EP+ +++ + N+Y G+ +EAAK+ M +
Sbjct: 750 LCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEK 809
Query: 697 RLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEM 740
L K+ GCSWIE+ + + F + G P EI++ L+ L M
Sbjct: 810 GLHKQPGCSWIEVSDRTNVFFSGGSSSPMKAEIFNVLNRLKSNM 853
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 212/657 (32%), Positives = 357/657 (54%), Gaps = 7/657 (1%)
Query: 90 QNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACD 149
+T N +I+ + K + A+ LFD M R+ +TWT L+ Y + ++ +
Sbjct: 76 HKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQ 135
Query: 150 MYRSEE-KFNEH-TCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTS--LISMYF 205
M RS +H T + +L C+ + Q+HAFA+K GF+ N F+ S L+ Y
Sbjct: 136 MCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYC 195
Query: 206 HSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTN 265
A +F + KD N +I Y K G + H+F+ + S +P+D+TF+
Sbjct: 196 EVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSG 255
Query: 266 VISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERN 325
V+ G+QLH L+V G R+ SVGN I+ Y KH E +FD + E +
Sbjct: 256 VLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELD 315
Query: 326 LISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHG 385
+S+ +IS Y ++ +++ F E +G + AT++ + S+L++G QLH
Sbjct: 316 FVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHC 375
Query: 386 FAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDE 445
A+ S + +G +LVD+YAK + A ++ + T + A++SG+++K
Sbjct: 376 QALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGA 435
Query: 446 EDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNAL 505
+ LF++ R + + D TF+ +L SAS A L+ G+ LHA+ I++G +V G+ L
Sbjct: 436 G--LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGL 493
Query: 506 ITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD 565
+ MYAKCGSI A Q+F+ + DR+ VSWNA++SA+A +G G+ A+ F +M G PD
Sbjct: 494 VDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDS 553
Query: 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLIN 625
+SILGVL AC + G E G F + IYG+ P +H+ACM+DLLGR GR +EA L++
Sbjct: 554 VSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMD 613
Query: 626 SSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEP-KDAGSFILVSNMYAGQGMLD 684
PF ++W ++++ ++ N + A+++L +E +DA +++ +SN+YA G +
Sbjct: 614 EMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWE 673
Query: 685 EAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMK 741
+ V+ M + + K SW+E++ K+H F ++ + HP +EI K++ L E++
Sbjct: 674 KVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIE 730
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 204/657 (31%), Positives = 350/657 (53%), Gaps = 2/657 (0%)
Query: 74 LKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKG 133
L++G+ +H +LK G +DT+ N L++LY L A+ +F M R A+T+ +LI G
Sbjct: 304 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING 363
Query: 134 YLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENN 193
G E + + M+ + + +T + ++ ACS G+Q+HA+ K GF +N
Sbjct: 364 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASN 423
Query: 194 VFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLS 253
+ +L+++Y A + F ++V N M++ Y + +F +F +
Sbjct: 424 NKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQI 483
Query: 254 SDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEE 313
+ PN YT+ +++ C +E G+Q+H +K V + ++ MY K G +
Sbjct: 484 EEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDT 543
Query: 314 AERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSV 373
A + + ++++SWT +I+GY + KA+ F + LD GI D L + C+
Sbjct: 544 AWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAG 603
Query: 374 CSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAI 433
L+ G Q+H A G+ SD+ ALV +Y++ G ++ + + + +NA+
Sbjct: 604 LQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNAL 663
Query: 434 LSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKT 493
+SGF + + + E+ + +F + G++ + TF + ++ A + +G+ +HA KT
Sbjct: 664 VSGFQQ--SGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKT 721
Query: 494 GYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLF 553
GY ++ V NALI+MYAKCGSI A + F +S ++ VSWNA+++AY+ HG G AL F
Sbjct: 722 GYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSF 781
Query: 554 EEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR 613
++M P+ ++++GVL AC + GL + GI F + YGL P EH+ C+VD+L R
Sbjct: 782 DQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTR 841
Query: 614 AGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILV 673
AG LS A I P L+WRTL+S + N + A+ LL+LEP+D+ +++L+
Sbjct: 842 AGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLL 901
Query: 674 SNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIY 730
SN+YA D R M + + KE G SWIE+ + +H F ++HP ++EI+
Sbjct: 902 SNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIH 958
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust.
Identities = 212/689 (30%), Positives = 374/689 (54%), Gaps = 11/689 (1%)
Query: 61 WPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGML 120
+P ++K G D+ +G AVH ++K+G D F N L++ Y + A +LFD M
Sbjct: 190 YPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMP 249
Query: 121 VRSAITWTSLIKGYLDDGDYESVLGIACDMYRS--EEKF--NEHTCSVILEACSLLEDRI 176
R+ ++W S+I+ + D+G E + +M + F + T +L C+ +
Sbjct: 250 ERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIG 309
Query: 177 FGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYN 236
G+ +H +A+K + + + +L+ MY GC A+ +F+ K+V N M+ ++
Sbjct: 310 LGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFS 369
Query: 237 KAGESEMAFHVFVHLLS--SDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVRE 294
G++ F V +L+ D + ++ T N + VC+ + K+LH ++K V
Sbjct: 370 AEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYN 429
Query: 295 ISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLD 354
V NA V Y K G A+R+F I + + SW ALI G+ +S +++ L+
Sbjct: 430 ELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKI 489
Query: 355 LGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKS 414
G+ DS + +++ CS +L LG ++HGF I++ D+ + +++ +Y G+L +
Sbjct: 490 SGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCT 549
Query: 415 ARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLS 474
+ L D K +N +++G+++ D + +F Q L G++ ++ +
Sbjct: 550 VQALFDAMEDKSLVSWNTVITGYLQNGFPDR--ALGVFRQMVLYGIQLCGISMMPVFGAC 607
Query: 475 ASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWN 534
+ L GR HAY++K D + +LI MYAK GSI + ++F G+ ++ SWN
Sbjct: 608 SLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWN 667
Query: 535 AMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQI 594
AM+ Y +HGL K A+ LFEEM+R G PDD++ LGVL AC +SGL G+ ++++
Sbjct: 668 AMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSS 727
Query: 595 YGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPL-LWRTLVSVSKLMANSKFSI 653
+GL+P L+H+AC++D+LGRAG+L +A+ ++ E+ + +W++L+S ++ N +
Sbjct: 728 FGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGE 787
Query: 654 LASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKL 713
+ +L +LEP+ +++L+SN+YAG G ++ KVR MN++ L K+AGCSWIE++ K+
Sbjct: 788 KVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKV 847
Query: 714 HHFVASGKDHPESEEIYSKLDLLNDEMKL 742
FV + EEI S +L EMK+
Sbjct: 848 FSFVVGERFLDGFEEIKSLWSIL--EMKI 874
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (931), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 212/691 (30%), Positives = 376/691 (54%), Gaps = 14/691 (2%)
Query: 61 WPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGML 120
+ L+K I + D +LG+ VHA L++ + D+ N+LI+LY+K A+ +F+ M
Sbjct: 65 FSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMR 124
Query: 121 ---VRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIF 177
R ++W++++ Y ++G + + + N++ + ++ ACS +
Sbjct: 125 RFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGV 184
Query: 178 GEQIHAFAIKSG-FENNVFVGTSLISMYFH-SGCFREAENVFRGLAYKDVRCVNFMILEY 235
G F +K+G FE++V VG SLI M+ F A VF ++ +V MI
Sbjct: 185 GRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRC 244
Query: 236 NKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREI 295
+ G A F+ ++ S FE + +T ++V S C E + GKQLH A++ G+V ++
Sbjct: 245 MQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDV 304
Query: 296 SVGNAIVTMYGK---HGMSEEAERMFDAISERNLISWTALISGYVRSGH-GGKAINGFLE 351
++V MY K G ++ ++FD + + +++SWTALI+GY+++ + +AIN F E
Sbjct: 305 EC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSE 362
Query: 352 FLDLG-ICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGG 410
+ G + + ++ C S+ +G Q+ G A K G S+ + +++ ++ K
Sbjct: 363 MITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSD 422
Query: 411 DLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRL 470
++ A+ + S K +N L G + + E L S+ + TF+ L
Sbjct: 423 RMEDAQRAFESLSEKNLVSYNTFLDGTCRNL--NFEQAFKLLSEITERELGVSAFTFASL 480
Query: 471 LSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDI 530
LS A+ + +G +H+ +K G + + V NALI+MY+KCGSID A ++F + +R++
Sbjct: 481 LSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNV 540
Query: 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNE 590
+SW +M++ +A HG L F +M EG P++++ + +L AC + GL G FN
Sbjct: 541 ISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNS 600
Query: 591 IEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSK 650
+ + + ++P +EH+ACMVDLL RAG L++A IN+ PF L+WRT + ++ +N++
Sbjct: 601 MYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTE 660
Query: 651 FSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEID 710
LA++++L+L+P + ++I +SN+YA G +E+ ++R M + L KE GCSWIE+
Sbjct: 661 LGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVG 720
Query: 711 SKLHHFVASGKDHPESEEIYSKLDLLNDEMK 741
K+H F HP + +IY +LD L E+K
Sbjct: 721 DKIHKFYVGDTAHPNAHQIYDELDRLITEIK 751
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (927), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 210/672 (31%), Positives = 361/672 (53%), Gaps = 4/672 (0%)
Query: 71 SGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSL 130
S L G+ +H +L S + DT N+++++Y K L A+++FD M R+ +++TS+
Sbjct: 80 SRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSV 139
Query: 131 IKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGF 190
I GY +G + + M + + ++ I++AC+ D G+Q+HA IK
Sbjct: 140 ITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLES 199
Query: 191 ENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAG-ESEMAFHVFV 249
+++ +LI+MY +A VF G+ KD+ + +I +++ G E E H+
Sbjct: 200 SSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKE 259
Query: 250 HLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHG 309
L F PN+Y F + + C L + G Q+HGL +K + G ++ MY + G
Sbjct: 260 MLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCG 319
Query: 310 MSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVID 369
A R+FD I + SW +I+G +G+ +A++ F + G D+ L +++
Sbjct: 320 FLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLC 379
Query: 370 GCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKY-TA 428
+ L G+Q+H + IK G+L+D+ + +L+ +Y DL L + F +
Sbjct: 380 AQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSV 439
Query: 429 EFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHA 488
+N IL+ ++ + +++ LF ++ EPD +T LL + L G +H
Sbjct: 440 SWNTILTACLQH--EQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHC 497
Query: 489 YSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKG 548
YS+KTG A + + N LI MYAKCGS+ A +IF + +RD+VSW+ ++ YA G G+
Sbjct: 498 YSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEE 557
Query: 549 ALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMV 608
AL+LF+EMK G P+ ++ +GVL AC + GL E G+ L+ ++ +G+ P EH +C+V
Sbjct: 558 ALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVV 617
Query: 609 DLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG 668
DLL RAGRL+EA I+ ++W+TL+S K N + A++ +L ++P ++
Sbjct: 618 DLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNST 677
Query: 669 SFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEE 728
+ +L+ +M+A G + AA +R++M + K G SWIEI+ K+H F A HPE ++
Sbjct: 678 AHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPERDD 737
Query: 729 IYSKLDLLNDEM 740
IY+ L + +M
Sbjct: 738 IYTVLHNIWSQM 749
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (924), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 213/686 (31%), Positives = 373/686 (54%), Gaps = 7/686 (1%)
Query: 61 WPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGML 120
+P LVK + + K + + G + F A++LI Y ++ ++DV KLFD +L
Sbjct: 141 FPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVL 200
Query: 121 VRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACS--LLEDRIFG 178
+ + W ++ GY G +SV+ M + N T +L C+ LL D G
Sbjct: 201 QKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLID--LG 258
Query: 179 EQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKA 238
Q+H + SG + + SL+SMY G F +A +FR ++ D N MI Y ++
Sbjct: 259 VQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQS 318
Query: 239 GESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVG 298
G E + F ++SS P+ TF++++ + +E KQ+H ++ + +I +
Sbjct: 319 GLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLT 378
Query: 299 NAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGIC 358
+A++ Y K A+ +F + +++ +TA+ISGY+ +G ++ F + + I
Sbjct: 379 SALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKIS 438
Query: 359 CDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARML 418
+ L +++ + L+LG +LHGF IK G+ + +G A++D+YAK G + A +
Sbjct: 439 PNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEI 498
Query: 419 LDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQA 478
+ S + +N++++ + +D+ + +F Q ++G+ D V+ S LS A+
Sbjct: 499 FERLSKRDIVSWNSMITRCAQ--SDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLP 556
Query: 479 CLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLS 538
G+++H + IK A+DV + LI MYAKCG++ A +FK + +++IVSWN++++
Sbjct: 557 SESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIA 616
Query: 539 AYALHGLGKGALLLFEEM-KREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGL 597
A HG K +L LF EM ++ G PD I+ L ++ +C + G + G+ F + + YG+
Sbjct: 617 ACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGI 676
Query: 598 RPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASK 657
+P EH+AC+VDL GRAGRL+EA + S PF +W TL+ +L N + + +AS
Sbjct: 677 QPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASS 736
Query: 658 RLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFV 717
+L+DL+P ++G ++L+SN +A + KVR+ M + + K G SWIEI+ + H FV
Sbjct: 737 KLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFV 796
Query: 718 ASGKDHPESEEIYSKLDLLNDEMKLK 743
+ +HPES IYS L+ L E++L+
Sbjct: 797 SGDVNHPESSHIYSLLNSLLGELRLE 822
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (918), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 216/696 (31%), Positives = 380/696 (54%), Gaps = 13/696 (1%)
Query: 64 LVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRS 123
++K+S D G+ +H +K G +D +L++ Y K + +K+FD M R+
Sbjct: 99 VLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERN 158
Query: 124 AITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGE--QI 181
+TWT+LI GY + + VL + M + N T + L L E+ + G Q+
Sbjct: 159 VVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGV--LAEEGVGGRGLQV 216
Query: 182 HAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGES 241
H +K+G + + V SLI++Y G R+A +F K V N MI Y G
Sbjct: 217 HTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLD 276
Query: 242 EMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAI 301
A +F + + ++ +F +VI +C + +QLH VK+G + + ++ A+
Sbjct: 277 LEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTAL 336
Query: 302 VTMYGKHGMSEEAERMFDAIS-ERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCD 360
+ Y K +A R+F I N++SWTA+ISG++++ +A++ F E G+ +
Sbjct: 337 MVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPN 396
Query: 361 SSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLD 420
+ ++ V S E+ H +K Y +GTAL+D Y K G ++ A +
Sbjct: 397 EFTYSVILTALPVISPSEV----HAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFS 452
Query: 421 GFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSL-SASQAC 479
G K ++A+L+G+ + + E + +F + G++P+ TFS +L++ +A+ A
Sbjct: 453 GIDDKDIVAWSAMLAGYAQ--TGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNAS 510
Query: 480 LVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSA 539
+ +G+ H ++IK+ + + V +AL+TMYAK G+I+ A ++FK ++D+VSWN+M+S
Sbjct: 511 MGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISG 570
Query: 540 YALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP 599
YA HG AL +F+EMK+ D ++ +GV AC ++GL E G F+ + + + P
Sbjct: 571 YAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAP 630
Query: 600 ILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRL 659
EH +CMVDL RAG+L +AM +I + P +WRT+++ ++ ++ LA++++
Sbjct: 631 TKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKI 690
Query: 660 LDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVAS 719
+ ++P+D+ +++L+SNMYA G E AKVR MN+ + KE G SWIE+ +K + F+A
Sbjct: 691 IAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAG 750
Query: 720 GKDHPESEEIYSKLDLLNDEMK-LKVKDSSAFELQD 754
+ HP ++IY KL+ L+ +K L + +++ LQD
Sbjct: 751 DRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQD 786
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 754 | ||||||
| 255577487 | 752 | pentatricopeptide repeat-containing prot | 0.976 | 0.978 | 0.610 | 0.0 | |
| 225441775 | 773 | PREDICTED: pentatricopeptide repeat-cont | 0.973 | 0.949 | 0.605 | 0.0 | |
| 317106770 | 638 | JMS10C05.5 [Jatropha curcas] | 0.839 | 0.992 | 0.638 | 0.0 | |
| 224087027 | 599 | predicted protein [Populus trichocarpa] | 0.781 | 0.983 | 0.633 | 0.0 | |
| 356555301 | 858 | PREDICTED: pentatricopeptide repeat-cont | 0.905 | 0.796 | 0.337 | 1e-117 | |
| 168044807 | 902 | predicted protein [Physcomitrella patens | 0.888 | 0.742 | 0.337 | 1e-116 | |
| 328774753 | 1020 | pentatricopeptide repeat protein 78 [Fun | 0.885 | 0.654 | 0.332 | 1e-116 | |
| 168056582 | 986 | predicted protein [Physcomitrella patens | 0.872 | 0.667 | 0.337 | 1e-115 | |
| 54695180 | 986 | PpPPR_98 [Physcomitrella patens] | 0.872 | 0.667 | 0.337 | 1e-115 | |
| 296082505 | 746 | unnamed protein product [Vitis vinifera] | 0.913 | 0.923 | 0.342 | 1e-115 |
| >gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 927 bits (2397), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/755 (61%), Positives = 568/755 (75%), Gaps = 19/755 (2%)
Query: 1 MHTLLPANLLQPPFKSQQSLPPLKKKVPINTFS-------------PNPKSQVAYLCSIS 47
M T PA LL K Q S P L+ K P + F+ NPK V +IS
Sbjct: 1 MTTFFPATLLPCISKPQFSFPQLEIKTPNSIFTCSSSKPVHNNNNLQNPKPNVTRYSTIS 60
Query: 48 SVSCSERTLLFNDWPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFN 107
+ E TLLFNDWP+L+KISIGS D LGQAVH++L+K+GSQ+DTF+ NN++NLY KFN
Sbjct: 61 N----EDTLLFNDWPELIKISIGSRDFLLGQAVHSYLVKAGSQDDTFKGNNVLNLYVKFN 116
Query: 108 RLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILE 167
RLD+AQK+FD M R+ ITWTSLIKGYL+D D++S IA DM++ E FNEHTC+VIL+
Sbjct: 117 RLDLAQKVFDRMRTRNTITWTSLIKGYLEDNDFQSAFSIAGDMHKFGENFNEHTCTVILQ 176
Query: 168 ACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRC 227
ACS +DRI GEQIH F IKSGF+ NVFVGTSLI+MY SG F AE VF + +KD+RC
Sbjct: 177 ACSSPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRC 236
Query: 228 VNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAV 287
+NFMILEY +AG A VF +LL+ FEP DYTFTN+IS C +LGVEEGKQL GLA
Sbjct: 237 LNFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNIISTCNGDLGVEEGKQLQGLAF 296
Query: 288 KFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAIN 347
K+G + E SVGNAI+TMYG GM +EAERMF ++SE+NLISWTALISGY RSG+G KA++
Sbjct: 297 KYGFLSETSVGNAIITMYGNSGMPKEAERMFSSMSEKNLISWTALISGYSRSGYGKKAVD 356
Query: 348 GFLEFLD-LGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIY 406
FL D LGI DS+ L ++D CS C+NLELGLQ+HGF +K G DV + TALVD+Y
Sbjct: 357 AFLGLHDELGINFDSTLLTAILDCCSDCNNLELGLQIHGFVMKLGCACDVNVATALVDLY 416
Query: 407 AKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVT 466
AK L+SAR++ D S K A FNAIL+GF+E + DEED M+LF+Q RLAG++PD VT
Sbjct: 417 AKCEKLQSARIVFDHLSNKGIASFNAILAGFLES-SGDEEDPMILFNQLRLAGVKPDMVT 475
Query: 467 FSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS 526
FSRLLSL A+QA L +GRS HAY++KTG+ ++ V N++I+MYAKCGSI+ A Q+F ++
Sbjct: 476 FSRLLSLLANQASLEKGRSFHAYTVKTGFDTNISVANSVISMYAKCGSIEDAHQMFNIMN 535
Query: 527 DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGIC 586
RD +SWNA++SAYALHG + +L LFEEMKR+GF PD+ +IL +LQAC YSGL + GIC
Sbjct: 536 CRDSISWNALISAYALHGQAQKSLFLFEEMKRKGFDPDEFTILAILQACTYSGLWKDGIC 595
Query: 587 LFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLM 646
LFN +E YG++P+LEH+ACM DLLGRAG LSEAM++I SPF +S LLWRTLV+V KL
Sbjct: 596 LFNLMEPKYGIKPLLEHYACMADLLGRAGYLSEAMDIIKRSPFPKSTLLWRTLVNVCKLH 655
Query: 647 ANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSW 706
N F LASK LLDL P +AGS+ILVSNMYA + M DEAAKVR MNDL+ KEAG SW
Sbjct: 656 GNLNFGKLASKHLLDLSPVEAGSYILVSNMYASEKMSDEAAKVRKVMNDLKFRKEAGSSW 715
Query: 707 IEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMK 741
IEID+K+HHFVAS KDHPES EIY++L+LL DEMK
Sbjct: 716 IEIDNKVHHFVASDKDHPESREIYTRLELLTDEMK 750
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/755 (60%), Positives = 558/755 (73%), Gaps = 21/755 (2%)
Query: 4 LLPANLLQPPFKSQQ---------SLPPLKKKVPINT--------FSPNPKSQVAYLCSI 46
L+P PF+++ + PLK + P NT + +P S+ + +
Sbjct: 8 LVPRAYAFSPFEAKPHSTEILNSPAFSPLKAR-PANTGFNSYPGHNAQDPNSKTTHSSMV 66
Query: 47 SSVSCSERTLLFNDWPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKF 106
S S++ LFNDWPQL++ISIGSGDL LGQA+HAFL K G QND F NNL+NLY KF
Sbjct: 67 YCNSDSDQNPLFNDWPQLLQISIGSGDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKF 126
Query: 107 NRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVIL 166
N+L AQ +FD MLVR+ ITWT+LIKG+L D ESV IA +MY E+FNEHTCSVIL
Sbjct: 127 NKLGDAQSVFDEMLVRNTITWTTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVIL 186
Query: 167 EACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVR 226
+AC LE+ + GEQIH F IK GF+ +VFVGTSLISMY G AE V+ LAYKDVR
Sbjct: 187 QACDSLENLVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVR 246
Query: 227 CVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLA 286
C+NFMI EY KAG E A VF+HLL S EPNDYTFTNVIS C ++ VE + LHG+
Sbjct: 247 CLNFMISEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGMC 306
Query: 287 VKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAI 346
+K G EISVGNAIV++Y KHGM EEAE+ F + ERNL+SWTAL+SGYV++G+G KA+
Sbjct: 307 IKCGCGDEISVGNAIVSVYVKHGMLEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKAL 366
Query: 347 NGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIY 406
GF + L+LG+ DS C AT++DGCS C NL LGLQ+HGF +K GY+ DV +GTAL+D+Y
Sbjct: 367 EGFSQILELGVGFDSCCFATLLDGCSECKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLY 426
Query: 407 AKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVT 466
AK L+SAR++ K FNAILSG+ I DEED M LFSQ RLA ++PD VT
Sbjct: 427 AKCRKLRSARLVFHSLLDKNIVSFNAILSGY---IGADEEDAMALFSQLRLADIKPDSVT 483
Query: 467 FSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS 526
F+RLLSLSA QACLV+G+ LHAY IKTG+ A+ VGNA+ITMYAKCGSI A Q+F ++
Sbjct: 484 FARLLSLSADQACLVKGKCLHAYIIKTGFEANPSVGNAVITMYAKCGSIGDACQLFYSMN 543
Query: 527 DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGIC 586
D +SWNA++SAYALHG G+ AL+LFEEMK+E F PD+I+IL VLQAC YSGL E G C
Sbjct: 544 YLDSISWNAVISAYALHGQGRKALILFEEMKKEEFVPDEITILSVLQACSYSGLLEEGFC 603
Query: 587 LFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLM 646
LFN++E YG++P +EHFACMVDLLGRAG LSEAM+ IN SPFS SPLLWRTLV V KL
Sbjct: 604 LFNDMESKYGIKPEIEHFACMVDLLGRAGYLSEAMSFINRSPFSGSPLLWRTLVHVCKLH 663
Query: 647 ANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSW 706
+ F +ASK LLDL P++AGS+ILVSN+YAG GML+EAA+VRT MNDL++SKEAG SW
Sbjct: 664 GDLNFGQIASKHLLDLAPEEAGSYILVSNLYAGGGMLNEAARVRTVMNDLKVSKEAGSSW 723
Query: 707 IEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMK 741
IEID+K+H FVAS KDHPES+EIY+KLDLL EMK
Sbjct: 724 IEIDNKVHQFVASDKDHPESKEIYAKLDLLKSEMK 758
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|317106770|dbj|BAJ53262.1| JMS10C05.5 [Jatropha curcas] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/634 (63%), Positives = 494/634 (77%), Gaps = 1/634 (0%)
Query: 119 MLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFG 178
MLVR+ ITWTSLIKGYLDD ++ES L IA +M++S E NEHTCSVIL+ACS + RIFG
Sbjct: 1 MLVRNTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFG 60
Query: 179 EQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKA 238
+Q H F IK GF+ NV VGTSLI+MY S F +AE VF +A KDVRC NFMILEY +A
Sbjct: 61 QQFHCFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARA 120
Query: 239 GESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVG 298
G E A VF+++L++ +PNDYTFTN+IS C +LG+EEG+Q GL+ K+G + E S+G
Sbjct: 121 GNGEKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSIG 180
Query: 299 NAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGIC 358
NAI+ MYGK GM+ EAERMF A+++RNLISWTALISGY RSG G KA++ F+E G+
Sbjct: 181 NAIINMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVN 240
Query: 359 CDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARML 418
DSS L T++DGCS C NLELGLQ+HG IK GY V +GTALVD+YAK G+L SARM+
Sbjct: 241 FDSSLLTTILDGCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARMV 300
Query: 419 LDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQA 478
DG S K A FNAIL+GFME D EED +VLF+ RL G++PD VTFSRLLSLSA+ +
Sbjct: 301 FDGLSSKRIASFNAILAGFMENSRDGEEDPIVLFNHFRLDGIKPDMVTFSRLLSLSANHS 360
Query: 479 CLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLS 538
L RGR HAY+IKTG+ AD+ V NA+ITMYAKCGSI+ A ++F ++D D +SWNAM+S
Sbjct: 361 TLGRGRCYHAYAIKTGFEADLSVANAVITMYAKCGSIEEAHRMFNVMNDHDSISWNAMIS 420
Query: 539 AYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLR 598
AYALHG G LLLFEEM ++ FAPD+I+IL +LQAC YSGL GI LFN +E YG++
Sbjct: 421 AYALHGQGAKVLLLFEEMIKKEFAPDEITILSILQACTYSGLFRDGISLFNVMEPKYGIK 480
Query: 599 PILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKR 658
P+LEH+ACMVDLLGRAG LSEAM++IN SPFS+S LLWRTLV+V KL + F LASK
Sbjct: 481 PLLEHYACMVDLLGRAGHLSEAMDIINKSPFSKSTLLWRTLVNVCKLCGDRNFGKLASKY 540
Query: 659 LLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVA 718
LL+L P +AGS+ILVSNMYAG+ MLDEAAKVRT MNDL+LSKEAG SWIEID K+HHFVA
Sbjct: 541 LLELSPVEAGSYILVSNMYAGERMLDEAAKVRTVMNDLKLSKEAGTSWIEIDDKVHHFVA 600
Query: 719 SGKDHPESEEIYSKLDLLNDEMKLKVKDSSAFEL 752
SGKDHPES EIY++LDLL D+M+ + D + F L
Sbjct: 601 SGKDHPESNEIYAELDLLRDDMRWRY-DVANFNL 633
|
Source: Jatropha curcas Species: Jatropha curcas Genus: Jatropha Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224087027|ref|XP_002308034.1| predicted protein [Populus trichocarpa] gi|222854010|gb|EEE91557.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/595 (63%), Positives = 471/595 (79%), Gaps = 6/595 (1%)
Query: 155 EKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAE 214
EKFNEHTC VIL+ACS + D + GEQIH F IKSGFE NVFVGTSLISMY SG F EAE
Sbjct: 6 EKFNEHTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEAE 65
Query: 215 NVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENL 274
VF G+ KD+RC+N MILEY KAG + A VF++L+S +PNDYTFTN+IS C
Sbjct: 66 KVFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTC---- 121
Query: 275 GVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALIS 334
VEEGKQLHGLAVK+GV+ + SVGNA++TMYGK+GM EEA RMF ++++NLISWTALIS
Sbjct: 122 NVEEGKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTALIS 181
Query: 335 GYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLS 394
GY R+G+G KA++GFLE G+ CDS LAT++DGCS C NL+LG Q+HG IK GY
Sbjct: 182 GYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVIKLGYPC 241
Query: 395 DVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQ 454
D+ +GTAL+D+YAK + +SAR + +G S + TA FNAIL GF+E +EED MV SQ
Sbjct: 242 DINIGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIEN-DSNEEDPMVFLSQ 300
Query: 455 QRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGS 514
RLAG++PD V+FSRLLSLSA++A LV+GR LHAYSIKTG+A + V NALITMYAKCG
Sbjct: 301 LRLAGIKPDSVSFSRLLSLSANRASLVKGRGLHAYSIKTGFAGHISVSNALITMYAKCGI 360
Query: 515 IDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQA 574
++ A+Q F +S D +SWNA++SAY+LHG G+ ALLL++EM+ +GF PD+I+IL +LQA
Sbjct: 361 VEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKALLLYQEMEEKGFTPDEITILVILQA 420
Query: 575 CIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPL 634
C YSGLSE G+ LFN +E YG++P+LEH+ACMVDLLGRAG LS+AM++IN SPFSES L
Sbjct: 421 CTYSGLSEDGLHLFNTMESKYGIQPLLEHYACMVDLLGRAGYLSQAMDIINRSPFSESTL 480
Query: 635 LWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694
LWRTLV+V KL + LASK LLDL P +AGS++LVSN+YAG+GM+DEA+KVRTTM
Sbjct: 481 LWRTLVNVCKLCGDLNLGKLASKHLLDLSPDEAGSYVLVSNIYAGEGMIDEASKVRTTMK 540
Query: 695 DLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMKLKVKDSSA 749
DL+LSKEAG SW+EID+ +H+FVASG DHPES EIY++LDLL +EM+ + DS A
Sbjct: 541 DLKLSKEAGSSWVEIDNMVHYFVASGTDHPESIEIYARLDLLRNEMR-GIYDSKA 594
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 233/690 (33%), Positives = 393/690 (56%), Gaps = 7/690 (1%)
Query: 49 VSCSERTLLFNDWPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNR 108
V C+E T +P ++K DL +G+ VH + +G ++D F AN L+ +YAK
Sbjct: 78 VKCNEFT-----FPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGL 132
Query: 109 LDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEA 168
LD +++LF G++ R+ ++W +L Y+ +G+ +M RS NE + S+IL A
Sbjct: 133 LDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNA 192
Query: 169 CSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCV 228
C+ L++ G +IH +K G + + F +L+ MY +G A VF+ +A+ DV
Sbjct: 193 CAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSW 252
Query: 229 NFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVK 288
N +I +++A + + S PN +T ++ + C E G+QLH +K
Sbjct: 253 NAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIK 312
Query: 289 FGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAING 348
++ +V MY K M ++A R +D++ ++++I+W ALISGY + G A++
Sbjct: 313 MDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSL 372
Query: 349 FLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAK 408
F + I + + L+TV+ + +++ Q+H +IK G SD + +L+D Y K
Sbjct: 373 FSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGK 432
Query: 409 GGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFS 468
+ A + + + + + ++++ + + D E+ + L+ Q + A ++PDP S
Sbjct: 433 CNHIDEASKIFEERTWEDLVAYTSMITAYSQ--YGDGEEALKLYLQMQDADIKPDPFICS 490
Query: 469 RLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR 528
LL+ A+ + +G+ LH ++IK G+ D+ N+L+ MYAKCGSI+ A + F I +R
Sbjct: 491 SLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNR 550
Query: 529 DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLF 588
IVSW+AM+ YA HG GK AL LF +M R+G P+ I+++ VL AC ++GL G F
Sbjct: 551 GIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYF 610
Query: 589 NEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMAN 648
++E ++G++P EH+ACM+DLLGR+G+L+EA+ L+NS PF +W L+ +++ N
Sbjct: 611 EKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKN 670
Query: 649 SKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIE 708
+ A+K L DLEP+ +G+ +L++N+YA GM + AKVR M D ++ KE G SWIE
Sbjct: 671 IELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIE 730
Query: 709 IDSKLHHFVASGKDHPESEEIYSKLDLLND 738
I K++ F+ + H S+EIY+KLD L D
Sbjct: 731 IKDKVYTFIVGDRSHSRSDEIYAKLDQLGD 760
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 227/672 (33%), Positives = 376/672 (55%), Gaps = 2/672 (0%)
Query: 72 GDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLI 131
G L+ G+ +H +++G D AN ++N+YAK ++ A+++FD M +S ++WT I
Sbjct: 140 GALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITI 199
Query: 132 KGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFE 191
GY D G E+ I M + N T +L A S +G+ +H+ + +G E
Sbjct: 200 GGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHE 259
Query: 192 NNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHL 251
++ VGT+L+ MY G +++ VF L +D+ N MI + G E A V+ +
Sbjct: 260 SDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQM 319
Query: 252 LSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMS 311
PN T+ +++ C + + GK++H K G +I V NA+++MY + G
Sbjct: 320 QREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSI 379
Query: 312 EEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGC 371
++A +FD + +++ISWTA+I G +SG G +A+ + E G+ + ++++ C
Sbjct: 380 KDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNAC 439
Query: 372 SVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFN 431
S + LE G ++H ++ G +D +G LV++Y+ G +K AR + D + +N
Sbjct: 440 SSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYN 499
Query: 432 AILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSI 491
A++ G+ E + LF + + G++PD VT+ +L+ A+ L R +H
Sbjct: 500 AMIGGYAAHNLGKE--ALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVR 557
Query: 492 KTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALL 551
K G+ +D VGNAL++ YAKCGS A +F+ ++ R+++SWNA++ A HG G+ AL
Sbjct: 558 KGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQ 617
Query: 552 LFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLL 611
LFE MK EG PD ++ + +L AC ++GL E G F + Q + + P +EH+ CMVDLL
Sbjct: 618 LFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLL 677
Query: 612 GRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFI 671
GRAG+L EA LI + PF + +W L+ ++ N + A++ L L+ +A ++
Sbjct: 678 GRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYV 737
Query: 672 LVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYS 731
+S+MYA GM D AAK+R M ++KE G SWI++ KLH+FVA + HP+SE+IY+
Sbjct: 738 ALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYA 797
Query: 732 KLDLLNDEMKLK 743
+LD L MK+K
Sbjct: 798 ELDRLTHAMKMK 809
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica] | Back alignment and taxonomy information |
|---|
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/670 (33%), Positives = 376/670 (56%), Gaps = 2/670 (0%)
Query: 74 LKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKG 133
L+ G+ +H +K+ D AN ++N+YAK + A+++FD M +S ++WT +I G
Sbjct: 260 LECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGG 319
Query: 134 YLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENN 193
Y D G E I M + N T +L A S +G+ +H+ + +G E++
Sbjct: 320 YADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESD 379
Query: 194 VFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLS 253
+ VGT+L+ MY G +++ VF L +D+ N MI + G E A ++ +
Sbjct: 380 LAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQR 439
Query: 254 SDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEE 313
PN T+ +++ C + G+++H VK G + +ISV NA+++MY + G ++
Sbjct: 440 EGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKD 499
Query: 314 AERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSV 373
A +F+ + +++ISWTA+I G +SG G +A+ F + G+ + ++++ CS
Sbjct: 500 ARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSS 559
Query: 374 CSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAI 433
+ L+ G ++H I+ G +D + LV++Y+ G +K AR + D + + +NA+
Sbjct: 560 PAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAM 619
Query: 434 LSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKT 493
+ G+ E + LF + + G++PD VT+ +L+ A+ L + +H+ +K
Sbjct: 620 IGGYAAHNLGKE--ALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKD 677
Query: 494 GYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLF 553
GY +D +GNAL++ YAKCGS A +F + R+++SWNA++ A HG G+ L LF
Sbjct: 678 GYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLF 737
Query: 554 EEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR 613
E MK EG PD ++ + +L AC ++GL E G F + + +G+ P +EH+ CMVDLLGR
Sbjct: 738 ERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGR 797
Query: 614 AGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILV 673
AG+L E LI + PF + +W L+ ++ N + A++ L L+P +A ++ +
Sbjct: 798 AGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVAL 857
Query: 674 SNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKL 733
S+MYA GM D AAK+R M ++KE G SWIE+ KLH+FVA + HPESE+IY++L
Sbjct: 858 SHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAEL 917
Query: 734 DLLNDEMKLK 743
D L MK++
Sbjct: 918 DKLTHAMKME 927
|
Source: Funaria hygrometrica Species: Funaria hygrometrica Genus: Funaria Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/669 (33%), Positives = 380/669 (56%), Gaps = 11/669 (1%)
Query: 77 GQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLD 136
G+ ++ +LK+G D F LIN++ K + A K+FD + R +TWTS+I G
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLAR 289
Query: 137 DGDYESVLGIACDMYRSEEKFNEHTCSV----ILEACSLLEDRIFGEQIHAFAIKSGFEN 192
G ++ AC++++ E+ V +L AC+ E G+++HA + G++
Sbjct: 290 HGRFKQ----ACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDT 345
Query: 193 NVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLL 252
++VGT+++SMY G +A VF + ++V MI + + G + AF F ++
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMI 405
Query: 253 SSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSE 312
S EPN TF +++ C ++ G+Q+ ++ G + V A+++MY K G +
Sbjct: 406 ESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLK 465
Query: 313 EAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCS 372
+A R+F+ IS++N+++W A+I+ YV+ A+ F L GI +SS ++++ C
Sbjct: 466 DAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCK 525
Query: 373 VCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNA 432
+LELG +H +K G SD+ + ALV ++ GDL SA+ L + + +N
Sbjct: 526 SSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNT 585
Query: 433 ILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIK 492
I++GF++ + F + +G++PD +TF+ LL+ AS L GR LHA +
Sbjct: 586 IIAGFVQH--GKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITE 643
Query: 493 TGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLL 552
+ DV+VG LI+MY KCGSI+ A Q+F + +++ SW +M++ YA HG GK AL L
Sbjct: 644 AAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALEL 703
Query: 553 FEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLG 612
F +M++EG PD I+ +G L AC ++GL E G+ F +++ + + P +EH+ CMVDL G
Sbjct: 704 FYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLFG 762
Query: 613 RAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672
RAG L+EA+ I +W L+ ++ N + + A+++ L+L+P D G F++
Sbjct: 763 RAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVI 822
Query: 673 VSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSK 732
+SN+YA GM E AK+R M D + K+ G SWIE+D K+H F + K HP++EEI+++
Sbjct: 823 LSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAE 882
Query: 733 LDLLNDEMK 741
L+ L+ EM+
Sbjct: 883 LERLHMEMR 891
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/669 (33%), Positives = 380/669 (56%), Gaps = 11/669 (1%)
Query: 77 GQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLD 136
G+ ++ +LK+G D F LIN++ K + A K+FD + R +TWTS+I G
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLAR 289
Query: 137 DGDYESVLGIACDMYRSEEKFNEHTCSV----ILEACSLLEDRIFGEQIHAFAIKSGFEN 192
G ++ AC++++ E+ V +L AC+ E G+++HA + G++
Sbjct: 290 HGRFKQ----ACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDT 345
Query: 193 NVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLL 252
++VGT+++SMY G +A VF + ++V MI + + G + AF F ++
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMI 405
Query: 253 SSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSE 312
S EPN TF +++ C ++ G+Q+ ++ G + V A+++MY K G +
Sbjct: 406 ESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLK 465
Query: 313 EAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCS 372
+A R+F+ IS++N+++W A+I+ YV+ A+ F L GI +SS ++++ C
Sbjct: 466 DAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCK 525
Query: 373 VCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNA 432
+LELG +H +K G SD+ + ALV ++ GDL SA+ L + + +N
Sbjct: 526 SSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNT 585
Query: 433 ILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIK 492
I++GF++ + F + +G++PD +TF+ LL+ AS L GR LHA +
Sbjct: 586 IIAGFVQH--GKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITE 643
Query: 493 TGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLL 552
+ DV+VG LI+MY KCGSI+ A Q+F + +++ SW +M++ YA HG GK AL L
Sbjct: 644 AAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALEL 703
Query: 553 FEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLG 612
F +M++EG PD I+ +G L AC ++GL E G+ F +++ + + P +EH+ CMVDL G
Sbjct: 704 FYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLFG 762
Query: 613 RAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672
RAG L+EA+ I +W L+ ++ N + + A+++ L+L+P D G F++
Sbjct: 763 RAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVI 822
Query: 673 VSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSK 732
+SN+YA GM E AK+R M D + K+ G SWIE+D K+H F + K HP++EEI+++
Sbjct: 823 LSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAE 882
Query: 733 LDLLNDEMK 741
L+ L+ EM+
Sbjct: 883 LERLHMEMR 891
|
Source: Physcomitrella patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 240/700 (34%), Positives = 397/700 (56%), Gaps = 11/700 (1%)
Query: 60 DWPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGM 119
++ L+++SI + + +H ++ SG Q+DTF AN LIN+ +K +R+D A+ +FD M
Sbjct: 51 EFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKM 110
Query: 120 LVRSAITWTSLIKGYLDDGDYESVLGIACDMYR-SEEKFNEHTCSVILEACSLLEDRIFG 178
++ ITW+S++ Y G E L + D+ R S E NE + ++ AC+ L G
Sbjct: 111 PHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKG 170
Query: 179 EQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKA 238
Q+H F ++SGF+ +V+VGTSLI Y +G EA VF L+ K +I Y K
Sbjct: 171 AQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKC 230
Query: 239 GESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVG 298
G S ++ +F + ++ P+ Y ++V+S C +E GKQ+H ++ G ++SV
Sbjct: 231 GRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVV 290
Query: 299 NAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGIC 358
N ++ Y K + ++FD + +N+ISWT +ISGY+++ +A+ F E LG
Sbjct: 291 NVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWK 350
Query: 359 CDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARML 418
D +V+ C LE G Q+H + IK SD + L+D+YAK L A+ +
Sbjct: 351 PDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKV 410
Query: 419 LDGFSCKYTAEFNAILSGF--MEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSAS 476
D + + +NA++ G+ EK+++ E LF + R+ +P+ TF+ L++ +++
Sbjct: 411 FDVMAEQNVISYNAMIEGYSSQEKLSEALE----LFHEMRVRLQKPNEFTFAALITAASN 466
Query: 477 QACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAM 536
A L G+ H +K G V NAL+ MYAKCGSI+ A ++F RD+V WN+M
Sbjct: 467 LASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSM 526
Query: 537 LSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYG 596
+S +A HG + AL +F EM +EG P+ ++ + VL AC ++G E G+ FN + +G
Sbjct: 527 ISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPG-FG 585
Query: 597 LRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILAS 656
++P EH+AC+V LLGR+G+L EA I P + ++WR+L+S ++ N + A+
Sbjct: 586 IKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAA 645
Query: 657 KRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHF 716
+ + +PKD+GS+IL+SN++A +GM + KVR M+ + KE G SWIE+++K++ F
Sbjct: 646 EMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVF 705
Query: 717 VASGKDHPESEEIYSKLDLLNDEMKLK--VKDSSAFELQD 754
+A H E+ +I S LD+L +K V D++A + D
Sbjct: 706 IARDTTHREA-DIGSVLDILIQHIKGAGYVPDATALLMND 744
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 754 | ||||||
| TAIR|locus:2057630 | 727 | AT2G33680 "AT2G33680" [Arabido | 0.901 | 0.935 | 0.328 | 6e-103 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.875 | 0.8 | 0.314 | 3.7e-99 | |
| TAIR|locus:2064828 | 860 | AT2G40720 [Arabidopsis thalian | 0.913 | 0.801 | 0.316 | 1.4e-94 | |
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.924 | 0.743 | 0.311 | 3.8e-94 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.867 | 0.614 | 0.300 | 9e-93 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.899 | 0.698 | 0.297 | 1.9e-92 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.893 | 0.792 | 0.302 | 1e-91 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.896 | 0.788 | 0.310 | 4.5e-91 | |
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.881 | 0.646 | 0.297 | 5.7e-91 | |
| TAIR|locus:2083961 | 768 | AT3G53360 "AT3G53360" [Arabido | 0.885 | 0.869 | 0.302 | 5.7e-91 |
| TAIR|locus:2057630 AT2G33680 "AT2G33680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
Identities = 227/691 (32%), Positives = 372/691 (53%)
Query: 73 DLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIK 132
+L G+AVH ++++G+ AN L+N YAK +L A +F+ ++ + ++W SLI
Sbjct: 29 NLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLIT 88
Query: 133 GYLDDGDYES---VLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSG 189
GY +G S V+ + +M + N +T + I +A S L+ G Q HA +K
Sbjct: 89 GYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMS 148
Query: 190 FENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFV 249
+++V TSL+ MY +G + VF + ++ + M+ Y G E A VF
Sbjct: 149 SFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFN 208
Query: 250 HLLSSDFE--PNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGK 307
L E +DY FT V+S + V G+Q+H + +K G++ +++ NA+VTMY K
Sbjct: 209 LFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSK 268
Query: 308 HGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATV 367
EA +MFD+ +RN I+W+A+++GY ++G +A+ F GI + V
Sbjct: 269 CESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGV 328
Query: 368 IDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYT 427
++ CS LE G QLH F +K G+ + TALVD+YAK G L AR D +
Sbjct: 329 LNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDV 388
Query: 428 AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLH 487
A + +++SG+++ D E+ ++L+ + + AG+ P+ T + +L +S A L G+ +H
Sbjct: 389 ALWTSLISGYVQN--SDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVH 446
Query: 488 AYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSXXXXXXXXX 547
++IK G+ +V +G+AL TMY+KCGS++ +F+ ++D+VSWNAM+S
Sbjct: 447 GHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGD 506
Query: 548 XXXXXFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACM 607
FEEM EG PDD++ + ++ AC + G E G FN + GL P ++H+ACM
Sbjct: 507 EALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACM 566
Query: 608 VDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667
VDLL RAG+L EA I S+ LWR L+S K + + A ++L+ L +++
Sbjct: 567 VDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRES 626
Query: 668 GSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESE 727
+++ +S +Y G + + +V M +SKE GCSWIE+ ++ H FV HP E
Sbjct: 627 STYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMHPMIE 686
Query: 728 EIYSKLDLLNDEMK----LKVKDSSAFELQD 754
E + L++ +M + V DSS E ++
Sbjct: 687 ETKDLVCLVSRQMIEEGFVTVLDSSFVEEEE 717
|
|
| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 922 (329.6 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 211/670 (31%), Positives = 356/670 (53%)
Query: 92 DTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMY 151
+T N +I+ + K + A+ LFD M R+ +TWT L+ Y + ++ + M
Sbjct: 78 NTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMC 137
Query: 152 RSEE-KFNEH-TCSVILEACS-LLEDRIFGEQIHAFAIKSGFENNVFVGTS--LISMYFH 206
RS +H T + +L C+ + G Q+HAFA+K GF+ N F+ S L+ Y
Sbjct: 138 RSSSCTLPDHVTFTTLLPGCNDAVPQNAVG-QVHAFAVKLGFDTNPFLTVSNVLLKSYCE 196
Query: 207 SGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNV 266
A +F + KD N +I Y K G + H+F+ + S +P+D+TF+ V
Sbjct: 197 VRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGV 256
Query: 267 ISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNL 326
+ G+QLH L+V G R+ SVGN I+ Y KH E +FD + E +
Sbjct: 257 LKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDF 316
Query: 327 ISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGF 386
+S+ +IS Y ++ +++ F E +G + AT++ + S+L++G QLH
Sbjct: 317 VSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQ 376
Query: 387 AIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEE 446
A+ S + +G +LVD+YAK + A ++ + T + A++SG+++K
Sbjct: 377 ALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAG 436
Query: 447 DVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALI 506
+ LF++ R + + D TF+ +L SAS A L+ G+ LHA+ I++G +V G+ L+
Sbjct: 437 --LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLV 494
Query: 507 TMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSXXXXXXXXXXXXXXFEEMKREGFAPDDI 566
MYAKCGSI A Q+F+ + DR+ VSWNA++S F +M G PD +
Sbjct: 495 DMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSV 554
Query: 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINS 626
SILGVL AC + G E G F + IYG+ P +H+ACM+DLLGR GR +EA L++
Sbjct: 555 SILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDE 614
Query: 627 SPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEP-KDAGSFILVSNMYAGQGMLDE 685
PF ++W ++++ ++ N + A+++L +E +DA +++ +SN+YA G ++
Sbjct: 615 MPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEK 674
Query: 686 AAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMKLK-V 744
V+ M + + K SW+E++ K+H F ++ + HP +EI K++ L E++ +
Sbjct: 675 VRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGY 734
Query: 745 KDSSAFELQD 754
K ++ +QD
Sbjct: 735 KPDTSSVVQD 744
|
|
| TAIR|locus:2064828 AT2G40720 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 223/704 (31%), Positives = 371/704 (52%)
Query: 49 VSCSERTLLFNDWPQLVKISI--------GSGDLKLGQAVHAFLLKSGSQNDTFEANNLI 100
V C R L+F P +SI G+ + G+ +H F+L++ D+F LI
Sbjct: 153 VGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALI 212
Query: 101 NLYAKFNRLDVAQKLFDGMLVRS-AITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNE 159
++Y KF A ++F + +S + W +I G+ G ES L + + K
Sbjct: 213 DMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVS 272
Query: 160 HTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRG 219
+ + L ACS E+ FG QIH +K G N+ +V TSL+SMY G EAE VF
Sbjct: 273 TSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSC 332
Query: 220 LAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEE- 278
+ K + N M+ Y + A +F + P+ +T +NVIS C LG+
Sbjct: 333 VVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCC-SVLGLYNY 391
Query: 279 GKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVR 338
GK +H K + ++ +A++T+Y K G +A +F ++ E+++++W +LISG +
Sbjct: 392 GKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCK 451
Query: 339 SGHGGKAINGFLEFLDL--GICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDV 396
+G +A+ F + D + DS + +V + C+ L GLQ+HG IK G + +V
Sbjct: 452 NGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNV 511
Query: 397 RLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQR 456
+G++L+D+Y+K G + A + S + +N+++S + + E + LF+
Sbjct: 512 FVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRN--NLPELSIDLFNLML 569
Query: 457 LAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSID 516
G+ PD V+ + +L +S A L++G+SLH Y+++ G +D + NALI MY KCG
Sbjct: 570 SQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSK 629
Query: 517 GAFQIFKGISDRDIVSWNAMLSXXXXXXXXXXXXXXFEEMKREGFAPDDISILGVLQACI 576
A IFK + + +++WN M+ F+EMK+ G +PDD++ L ++ AC
Sbjct: 630 YAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACN 689
Query: 577 YSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLW 636
+SG E G +F ++Q YG+ P +EH+A MVDLLGRAG L EA + I + P +W
Sbjct: 690 HSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIW 749
Query: 637 RTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696
L+S S+ N + IL++++LL +EP+ +++ + N+Y G+ +EAAK+ M +
Sbjct: 750 LCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEK 809
Query: 697 RLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEM 740
L K+ GCSWIE+ + + F + G P EI++ L+ L M
Sbjct: 810 GLHKQPGCSWIEVSDRTNVFFSGGSSSPMKAEIFNVLNRLKSNM 853
|
|
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
Identities = 221/710 (31%), Positives = 362/710 (50%)
Query: 49 VSCSERTLLFNDWPQLVKISIGS-GDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFN 107
V C+E ++ LV S G D LG+ + ++KSG ++ N+LI++
Sbjct: 156 VGCNENSM------SLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMG 209
Query: 108 RLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILE 167
+D A +FD M R I+W S+ Y +G E I M R ++ N T S +L
Sbjct: 210 NVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLS 269
Query: 168 ACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRC 227
++ + +G IH +K GF++ V V +L+ MY +G EA VF+ + KD+
Sbjct: 270 VLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLIS 329
Query: 228 VNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAV 287
N ++ + G S A + ++SS N TFT+ ++ C+ E+G+ LHGL V
Sbjct: 330 WNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVV 389
Query: 288 KFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAIN 347
G+ +GNA+V+MYGK G E+ R+ + R++++W ALI GY KA+
Sbjct: 390 VSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALA 449
Query: 348 GFLEFLDLGICCDSSCLATVIDGCSVCSNL-ELGLQLHGFAIKHGYLSDVRLGTALVDIY 406
F G+ + + +V+ C + +L E G LH + + G+ SD + +L+ +Y
Sbjct: 450 AFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMY 509
Query: 407 AKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVT 466
AK GDL S++ L +G + +NA+L+ E+V+ L S+ R G+ D +
Sbjct: 510 AKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHH--GHGEEVLKLVSKMRSFGVSLDQFS 567
Query: 467 FSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS 526
FS LS +A A L G+ LH ++K G+ D + NA MY+KCG I ++
Sbjct: 568 FSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSV 627
Query: 527 DRDIVSWNAMLSXXXXXXXXXXXXXXFEEMKREGFAPDDISILGVLQACIYSGLSEGGIC 586
+R + SWN ++S F EM G P ++ + +L AC + GL + G+
Sbjct: 628 NRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLA 687
Query: 587 LFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLM 646
++ I + +GL P +EH C++DLLGR+GRL+EA I+ P + L+WR+L++ K+
Sbjct: 688 YYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIH 747
Query: 647 ANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSW 706
N A++ L LEP+D ++L SNM+A G ++ VR M + K+ CSW
Sbjct: 748 GNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSW 807
Query: 707 IEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMKLK--VKDSSAFELQD 754
+++ K+ F + HP++ EIY+KL+ + +K V D+S LQD
Sbjct: 808 VKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQ-ALQD 856
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 198/658 (30%), Positives = 345/658 (52%)
Query: 74 LKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKG 133
L++G+ +H +LK G +DT+ N L++LY L A+ +F M R A+T+ +LI G
Sbjct: 304 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING 363
Query: 134 YLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIF-GEQIHAFAIKSGFEN 192
G E + + M+ + + +T + ++ ACS + +F G+Q+HA+ K GF +
Sbjct: 364 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA-DGTLFRGQQLHAYTTKLGFAS 422
Query: 193 NVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLL 252
N + +L+++Y A + F ++V N M++ Y + +F +F +
Sbjct: 423 NNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQ 482
Query: 253 SSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSE 312
+ PN YT+ +++ C +E G+Q+H +K V + ++ MY K G +
Sbjct: 483 IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLD 542
Query: 313 EAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCS 372
A + + ++++SWT +I+GY + KA+ F + LD GI D L + C+
Sbjct: 543 TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA 602
Query: 373 VCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNA 432
L+ G Q+H A G+ SD+ ALV +Y++ G ++ + + + +NA
Sbjct: 603 GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNA 662
Query: 433 ILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIK 492
++SGF + + + E+ + +F + G++ + TF + ++ A + +G+ +HA K
Sbjct: 663 LVSGFQQ--SGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITK 720
Query: 493 TGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSXXXXXXXXXXXXXX 552
TGY ++ V NALI+MYAKCGSI A + F +S ++ VSWNA+++
Sbjct: 721 TGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDS 780
Query: 553 FEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLG 612
F++M P+ ++++GVL AC + GL + GI F + YGL P EH+ C+VD+L
Sbjct: 781 FDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLT 840
Query: 613 RAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672
RAG LS A I P L+WRTL+S + N + A+ LL+LEP+D+ +++L
Sbjct: 841 RAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVL 900
Query: 673 VSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIY 730
+SN+YA D R M + + KE G SWIE+ + +H F ++HP ++EI+
Sbjct: 901 LSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIH 958
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
Identities = 205/689 (29%), Positives = 365/689 (52%)
Query: 61 WPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGML 120
+P ++K G D+ +G AVH ++K+G D F N L++ Y + A +LFD M
Sbjct: 190 YPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMP 249
Query: 121 VRSAITWTSLIKGYLDDGDYESVLGIACDMYRS--EEKF--NEHTCSVILEACSLLEDRI 176
R+ ++W S+I+ + D+G E + +M + F + T +L C+ +
Sbjct: 250 ERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIG 309
Query: 177 FGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYN 236
G+ +H +A+K + + + +L+ MY GC A+ +F+ K+V N M+ ++
Sbjct: 310 LGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFS 369
Query: 237 KAGESEMAFHVFVHLLSS--DFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVRE 294
G++ F V +L+ D + ++ T N + VC+ + K+LH ++K V
Sbjct: 370 AEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYN 429
Query: 295 ISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLD 354
V NA V Y K G A+R+F I + + SW ALI G+ +S +++ L+
Sbjct: 430 ELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKI 489
Query: 355 LGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKS 414
G+ DS + +++ CS +L LG ++HGF I++ D+ + +++ +Y G+L +
Sbjct: 490 SGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCT 549
Query: 415 ARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLS 474
+ L D K +N +++G+++ D + +F Q L G++ ++ +
Sbjct: 550 VQALFDAMEDKSLVSWNTVITGYLQNGFPDR--ALGVFRQMVLYGIQLCGISMMPVFGAC 607
Query: 475 ASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWN 534
+ L GR HAY++K D + +LI MYAK GSI + ++F G+ ++ SWN
Sbjct: 608 SLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWN 667
Query: 535 AMLSXXXXXXXXXXXXXXFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQI 594
AM+ FEEM+R G PDD++ LGVL AC +SGL G+ ++++
Sbjct: 668 AMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSS 727
Query: 595 YGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPL-LWRTLVSVSKLMANSKFSI 653
+GL+P L+H+AC++D+LGRAG+L +A+ ++ E+ + +W++L+S ++ N +
Sbjct: 728 FGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGE 787
Query: 654 LASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKL 713
+ +L +LEP+ +++L+SN+YAG G ++ KVR MN++ L K+AGCSWIE++ K+
Sbjct: 788 KVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKV 847
Query: 714 HHFVASGKDHPESEEIYSKLDLLNDEMKL 742
FV + EEI S +L EMK+
Sbjct: 848 FSFVVGERFLDGFEEIKSLWSIL--EMKI 874
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 208/688 (30%), Positives = 370/688 (53%)
Query: 64 LVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGML--- 120
L+K I + D +LG+ VHA L++ + D+ N+LI+LY+K A+ +F+ M
Sbjct: 68 LLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFG 127
Query: 121 VRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQ 180
R ++W++++ Y ++G + + + N++ + ++ ACS + G
Sbjct: 128 KRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRV 187
Query: 181 IHAFAIKSG-FENNVFVGTSLISMYFHS-GCFREAENVFRGLAYKDVRCVNFMILEYNKA 238
F +K+G FE++V VG SLI M+ F A VF ++ +V MI +
Sbjct: 188 TLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQM 247
Query: 239 GESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVG 298
G A F+ ++ S FE + +T ++V S C E + GKQLH A++ G+V ++
Sbjct: 248 GFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVEC- 306
Query: 299 NAIVTMYGK---HGMSEEAERMFDAISERNLISWTALISGYVRSGH-GGKAINGFLEFLD 354
++V MY K G ++ ++FD + + +++SWTALI+GY+++ + +AIN F E +
Sbjct: 307 -SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMIT 365
Query: 355 LG-ICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLK 413
G + + ++ C S+ +G Q+ G A K G S+ + +++ ++ K ++
Sbjct: 366 QGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRME 425
Query: 414 SARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSL 473
A+ + S K +N L G + + E L S+ + TF+ LLS
Sbjct: 426 DAQRAFESLSEKNLVSYNTFLDGTCRNL--NFEQAFKLLSEITERELGVSAFTFASLLSG 483
Query: 474 SASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSW 533
A+ + +G +H+ +K G + + V NALI+MY+KCGSID A ++F + +R+++SW
Sbjct: 484 VANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISW 543
Query: 534 NAMLSXXXXXXXXXXXXXXFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQ 593
+M++ F +M EG P++++ + +L AC + GL G FN + +
Sbjct: 544 TSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYE 603
Query: 594 IYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSI 653
+ ++P +EH+ACMVDLL RAG L++A IN+ PF L+WRT + ++ +N++
Sbjct: 604 DHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGK 663
Query: 654 LASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKL 713
LA++++L+L+P + ++I +SN+YA G +E+ ++R M + L KE GCSWIE+ K+
Sbjct: 664 LAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKI 723
Query: 714 HHFVASGKDHPESEEIYSKLDLLNDEMK 741
H F HP + +IY +LD L E+K
Sbjct: 724 HKFYVGDTAHPNAHQIYDELDRLITEIK 751
|
|
| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 214/689 (31%), Positives = 373/689 (54%)
Query: 61 WPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGML 120
+P LVK + + K + + G + F A++LI Y ++ ++DV KLFD +L
Sbjct: 141 FPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVL 200
Query: 121 VRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACS--LLEDRIFG 178
+ + W ++ GY G +SV+ M + N T +L C+ LL D G
Sbjct: 201 QKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLID--LG 258
Query: 179 EQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKA 238
Q+H + SG + + SL+SMY G F +A +FR ++ D N MI Y ++
Sbjct: 259 VQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQS 318
Query: 239 GESEMAFHVFVHLLSSDFEPNDYTFTNVI-SVC-YENLGVEEGKQLHGLAVKFGVVREIS 296
G E + F ++SS P+ TF++++ SV +ENL E KQ+H ++ + +I
Sbjct: 319 GLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENL--EYCKQIHCYIMRHSISLDIF 376
Query: 297 VGNAIVTMYGK-HGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDL 355
+ +A++ Y K G+S A+ +F + +++ +TA+ISGY+ +G ++ F + +
Sbjct: 377 LTSALIDAYFKCRGVSM-AQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKV 435
Query: 356 GICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSA 415
I + L +++ + L+LG +LHGF IK G+ + +G A++D+YAK G + A
Sbjct: 436 KISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLA 495
Query: 416 RMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSA 475
+ + S + +N++++ + +D+ + +F Q ++G+ D V+ S LS A
Sbjct: 496 YEIFERLSKRDIVSWNSMITRCAQ--SDNPSAAIDIFRQMGVSGICYDCVSISAALSACA 553
Query: 476 SQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNA 535
+ G+++H + IK A+DV + LI MYAKCG++ A +FK + +++IVSWN+
Sbjct: 554 NLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNS 613
Query: 536 MLSXXXXXXXXXXXXXXFEEM-KREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQI 594
+++ F EM ++ G PD I+ L ++ +C + G + G+ F + +
Sbjct: 614 IIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTED 673
Query: 595 YGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSIL 654
YG++P EH+AC+VDL GRAGRL+EA + S PF +W TL+ +L N + + +
Sbjct: 674 YGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEV 733
Query: 655 ASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLH 714
AS +L+DL+P ++G ++L+SN +A + KVR+ M + + K G SWIEI+ + H
Sbjct: 734 ASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTH 793
Query: 715 HFVASGKDHPESEEIYSKLDLLNDEMKLK 743
FV+ +HPES IYS L+ L E++L+
Sbjct: 794 LFVSGDVNHPESSHIYSLLNSLLGELRLE 822
|
|
| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 200/673 (29%), Positives = 355/673 (52%)
Query: 73 DLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIK 132
+L LG VHA +K G ++ + ++L+++Y+K +++ A K+F+ + ++ + W ++I+
Sbjct: 342 NLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIR 401
Query: 133 GYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFEN 192
GY +G+ V+ + DM S ++ T + +L C+ D G Q H+ IK
Sbjct: 402 GYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAK 461
Query: 193 NVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEY-NKAGESEMAFHVFVHL 251
N+FVG +L+ MY G +A +F + +D N +I Y ESE AF +F +
Sbjct: 462 NLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESE-AFDLFKRM 520
Query: 252 LSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMS 311
+ + + C G+ +GKQ+H L+VK G+ R++ G++++ MY K G+
Sbjct: 521 NLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGII 580
Query: 312 EEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGC 371
++A ++F ++ E +++S ALI+GY ++ +A+ F E L G+ AT+++ C
Sbjct: 581 KDARKVFSSLPEWSVVSMNALIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEAC 639
Query: 372 SVCSNLELGLQLHGFAIKHGYLSDVR-LGTALVDIYAKGGDLKSARMLLDGFSC-KYTAE 429
+L LG Q HG K G+ S+ LG +L+ +Y + A L S K
Sbjct: 640 HKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVL 699
Query: 430 FNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAY 489
+ ++SG + E+ + + + R G+ PD TF +L + + + L GR++H+
Sbjct: 700 WTGMMSGHSQN--GFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSL 757
Query: 490 SIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR-DIVSWNAMLSXXXXXXXXXX 548
+ D + N LI MYAKCG + G+ Q+F + R ++VSWN++++
Sbjct: 758 IFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAED 817
Query: 549 XXXXFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMV 608
F+ M++ PD+I+ LGVL AC ++G G +F + YG+ ++H ACMV
Sbjct: 818 ALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMV 877
Query: 609 DLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG 668
DLLGR G L EA + I + LW +L+ ++ + +++++L++LEP+++
Sbjct: 878 DLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSS 937
Query: 669 SFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEE 728
+++L+SN+YA QG ++A +R M D + K G SWI+++ + H F A K H E +
Sbjct: 938 AYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGK 997
Query: 729 IYSKLDLLNDEMK 741
I L+ L D MK
Sbjct: 998 IEMFLEDLYDLMK 1010
|
|
| TAIR|locus:2083961 AT3G53360 "AT3G53360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 203/672 (30%), Positives = 352/672 (52%)
Query: 71 SGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSL 130
S L G+ +H +L S + DT N+++++Y K L A+++FD M R+ +++TS+
Sbjct: 80 SRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSV 139
Query: 131 IKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGF 190
I GY +G + + M + + ++ I++AC+ D G+Q+HA IK
Sbjct: 140 ITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLES 199
Query: 191 ENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAG-ESEMAFHVFV 249
+++ +LI+MY +A VF G+ KD+ + +I +++ G E E H+
Sbjct: 200 SSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKE 259
Query: 250 HLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHG 309
L F PN+Y F + + C L + G Q+HGL +K + G ++ MY + G
Sbjct: 260 MLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCG 319
Query: 310 MSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVID 369
A R+FD I + SW +I+G +G+ +A++ F + G D+ L +++
Sbjct: 320 FLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLC 379
Query: 370 GCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKY-TA 428
+ L G+Q+H + IK G+L+D+ + +L+ +Y DL L + F +
Sbjct: 380 AQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSV 439
Query: 429 EFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHA 488
+N IL+ ++ + +++ LF ++ EPD +T LL + L G +H
Sbjct: 440 SWNTILTACLQH--EQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHC 497
Query: 489 YSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSXXXXXXXXXX 548
YS+KTG A + + N LI MYAKCGS+ A +IF + +RD+VSW+ ++
Sbjct: 498 YSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEE 557
Query: 549 XXXXFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMV 608
F+EMK G P+ ++ +GVL AC + GL E G+ L+ ++ +G+ P EH +C+V
Sbjct: 558 ALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVV 617
Query: 609 DLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG 668
DLL RAGRL+EA I+ ++W+TL+S K N + A++ +L ++P ++
Sbjct: 618 DLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNST 677
Query: 669 SFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEE 728
+ +L+ +M+A G + AA +R++M + K G SWIEI+ K+H F A HPE ++
Sbjct: 678 AHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPERDD 737
Query: 729 IYSKLDLLNDEM 740
IY+ L + +M
Sbjct: 738 IYTVLHNIWSQM 749
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P93005 | PP181_ARATH | No assigned EC number | 0.3357 | 0.9018 | 0.9353 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 754 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-125 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-95 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-56 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-51 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-39 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-37 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-29 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-26 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 394 bits (1014), Expect = e-125
Identities = 214/669 (31%), Positives = 362/669 (54%), Gaps = 12/669 (1%)
Query: 77 GQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLD 136
G V + L S N +++++ +F L A +F M R +W L+ GY
Sbjct: 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAK 164
Query: 137 DGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFV 196
G ++ L + M + + + +T +L C + D G ++HA ++ GFE +V V
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224
Query: 197 GTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDF 256
+LI+MY G A VF + +D N MI Y + GE +F +
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284
Query: 257 EPNDYTFTNVISVCYENLGVEE-GKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAE 315
+P+ T T+VIS C E LG E G+++HG VK G ++SV N+++ MY G EAE
Sbjct: 285 DPDLMTITSVISAC-ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 316 RMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCS 375
++F + ++ +SWTA+ISGY ++G KA+ + + D +A+V+ C+
Sbjct: 344 KVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403
Query: 376 NLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSC---KYTAEFNA 432
+L++G++LH A + G +S V + AL+++Y+K + A L+ F K + +
Sbjct: 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA---LEVFHNIPEKDVISWTS 460
Query: 433 ILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIK 492
I++G E ++F +Q L ++P+ VT LS A L+ G+ +HA+ ++
Sbjct: 461 IIAGLRLNNRCFEA---LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517
Query: 493 TGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLL 552
TG D + NAL+ +Y +CG ++ A+ F ++D+VSWN +L+ Y HG G A+ L
Sbjct: 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVEL 576
Query: 553 FEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLG 612
F M G PD+++ + +L AC SG+ G+ F+ +E+ Y + P L+H+AC+VDLLG
Sbjct: 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636
Query: 613 RAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672
RAG+L+EA N IN P + P +W L++ ++ + + LA++ + +L+P G +IL
Sbjct: 637 RAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL 696
Query: 673 VSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSK 732
+ N+YA G DE A+VR TM + L+ + GCSW+E+ K+H F+ + HP+ +EI +
Sbjct: 697 LCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTV 756
Query: 733 LDLLNDEMK 741
L+ ++MK
Sbjct: 757 LEGFYEKMK 765
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 311 bits (798), Expect = 2e-95
Identities = 162/537 (30%), Positives = 272/537 (50%), Gaps = 42/537 (7%)
Query: 210 FREAENVFRGL----AYK-DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFT 264
REA +F L + + ++ V+ H+ SS FEP+ Y
Sbjct: 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM- 161
Query: 265 NVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISER 324
N ++ M+ K GM +A R+FD + ER
Sbjct: 162 ----------------------------------NRVLLMHVKCGMLIDARRLFDEMPER 187
Query: 325 NLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLH 384
NL SW +I G V +G+ +A F E + G + ++ + + G QLH
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247
Query: 385 GFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADD 444
+K G + D + AL+D+Y+K GD++ AR + DG K T +N++L+G+ +
Sbjct: 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA--LHGY 305
Query: 445 EEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNA 504
E+ + L+ + R +G+ D TFS ++ + + A L + HA I+TG+ D++ A
Sbjct: 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365
Query: 505 LITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD 564
L+ +Y+K G ++ A +F + ++++SWNA+++ Y HG G A+ +FE M EG AP+
Sbjct: 366 LVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425
Query: 565 DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLI 624
++ L VL AC YSGLSE G +F + + + ++P H+ACM++LLGR G L EA +I
Sbjct: 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485
Query: 625 NSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLD 684
+PF + +W L++ ++ N + LA+++L + P+ +++++ N+Y G
Sbjct: 486 RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545
Query: 685 EAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMK 741
EAAKV T+ LS C+WIE+ + H F + + HP+S EIY KLD L E+
Sbjct: 546 EAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEIS 602
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (527), Expect = 2e-56
Identities = 136/492 (27%), Positives = 241/492 (48%), Gaps = 20/492 (4%)
Query: 61 WPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGML 120
+P +++ G DL G+ VHA +++ G + D N LI +Y K + A+ +FD M
Sbjct: 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP 249
Query: 121 VRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQ 180
R I+W ++I GY ++G+ L + M + T + ++ AC LL D G +
Sbjct: 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309
Query: 181 IHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGE 240
+H + +K+GF +V V SLI MY G + EAE VF + KD MI Y K G
Sbjct: 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369
Query: 241 SEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLG-VEEGKQLHGLAVKFGVVREISVGN 299
+ A + + + P++ T +V+S C LG ++ G +LH LA + G++ + V N
Sbjct: 370 PDKALETYALMEQDNVSPDEITIASVLSAC-ACLGDLDVGVKLHELAERKGLISYVVVAN 428
Query: 300 AIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICC 359
A++ MY K ++A +F I E+++ISWT++I+G + +A+ F + L +
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI-FFRQMLLTLKP 487
Query: 360 DSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLL 419
+S L + C+ L G ++H ++ G D L AL+D+Y + G + A
Sbjct: 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA---W 544
Query: 420 DGFSC--KYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQ 477
+ F+ K +N +L+G++ + LF++ +G+ PD VTF LL + S+
Sbjct: 545 NQFNSHEKDVVSWNILLTGYVAH--GKGSMAVELFNRMVESGVNPDEVTFISLLC-ACSR 601
Query: 478 ACLVRGRSLHAYSIKTGYAADVIVGN-----ALITMYAKCGSIDGAFQIFKGIS-DRDIV 531
+ +V + +S++ Y+ I N ++ + + G + A+ + D
Sbjct: 602 SGMVTQGLEYFHSMEEKYS---ITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPA 658
Query: 532 SWNAMLSAYALH 543
W A+L+A +H
Sbjct: 659 VWGALLNACRIH 670
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 9e-51
Identities = 100/330 (30%), Positives = 172/330 (52%), Gaps = 2/330 (0%)
Query: 258 PNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERM 317
++ + + +C VEEG ++ A+ + +GNA+++M+ + G A +
Sbjct: 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYV 143
Query: 318 FDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNL 377
F + ER+L SW L+ GY ++G+ +A+ + L G+ D V+ C +L
Sbjct: 144 FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203
Query: 378 ELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGF 437
G ++H ++ G+ DV + AL+ +Y K GD+ SAR++ D + +NA++SG+
Sbjct: 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY 263
Query: 438 MEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAA 497
E + + + LF R ++PD +T + ++S GR +H Y +KTG+A
Sbjct: 264 FEN--GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321
Query: 498 DVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMK 557
DV V N+LI MY GS A ++F + +D VSW AM+S Y +GL AL + M+
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 558 REGFAPDDISILGVLQACIYSGLSEGGICL 587
++ +PD+I+I VL AC G + G+ L
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVGVKL 411
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 2e-39
Identities = 90/309 (29%), Positives = 148/309 (47%)
Query: 64 LVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRS 123
LV+ I ++ +AV+ + SG + D + N ++ ++ K L A++LFD M R+
Sbjct: 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN 188
Query: 124 AITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHA 183
+W ++I G +D G+Y + +M+ T V+L A + L G+Q+H
Sbjct: 189 LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248
Query: 184 FAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEM 243
+K+G + FV +LI MY G +A VF G+ K N M+ Y G SE
Sbjct: 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE 308
Query: 244 AFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVT 303
A ++ + S + +TF+ +I + +E KQ H ++ G +I A+V
Sbjct: 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368
Query: 304 MYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSC 363
+Y K G E+A +FD + +NLISW ALI+GY G G KA+ F + G+ +
Sbjct: 369 LYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428
Query: 364 LATVIDGCS 372
V+ C
Sbjct: 429 FLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 9e-37
Identities = 115/470 (24%), Positives = 209/470 (44%), Gaps = 45/470 (9%)
Query: 161 TCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGL 220
T ++EAC L+ + ++ SGFE + ++ ++ M+ G +A +F +
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 221 AYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGK 280
+++ +I AG AF +F + + TF ++ G+
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 281 QLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSG 340
QLH +K GVV + V A++ MY K G E+A +FD + E+ ++W ++++GY G
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG 304
Query: 341 HGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGT 400
+ +A+ + E D G+ D + +I S + LE Q H I+ G+ D+ T
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 401 ALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGM 460
ALVD+Y+K G ++ AR + D K +NA+++G+ + +F + G+
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGT--KAVEMFERMIAEGV 422
Query: 461 EPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQ 520
P+ VTF +LS AC YS G + ++
Sbjct: 423 APNHVTFLAVLS-----AC--------RYS----------------------GLSEQGWE 447
Query: 521 IFKGISDRDIVSWNAMLSAYALHGLGKGALL--LFEEMKREGFAPDDISILGVLQAC-IY 577
IF+ +S+ + AM A + LG+ LL + ++R F P +L AC I+
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIH 507
Query: 578 SGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLGRAGRLSEAMNLINS 626
L G + E++YG+ P L ++ +++L +GR +EA ++ +
Sbjct: 508 KNLELGRLA----AEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 9e-29
Identities = 103/425 (24%), Positives = 194/425 (45%), Gaps = 50/425 (11%)
Query: 64 LVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRS 123
+++ S G G + GQ +H +LK+G DTF + LI++Y+K ++ A+ +FDGM ++
Sbjct: 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT 289
Query: 124 AITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHA 183
+ W S++ GY G E L + +M S ++ T S+++ S L +Q HA
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349
Query: 184 FAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEM 243
I++GF ++ T+L+ +Y G +A NVF + K++ N +I Y G
Sbjct: 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTK 409
Query: 244 AFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNA-IV 302
A +F +++ PN TF V+S C + E+G ++ + ++ ++ A ++
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469
Query: 303 TMYGKHGMSEEAERMF-DAISERNLISWTALIS----------GYVRS----GHGGKAIN 347
+ G+ G+ +EA M A + + W AL++ G + + G G + +N
Sbjct: 470 ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529
Query: 348 GFLEFLDL----GICCDSSCLATVID--GCSV---CSNLELGLQLHGFAIK---HGYLSD 395
++ L+L G +++ + + G S+ C+ +E+ Q H F H +
Sbjct: 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589
Query: 396 V--RLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFS 453
+ +L + +I G Y AE N +L + +DEE V +
Sbjct: 590 IYQKLDELMKEISEYG----------------YVAEENELLP----DVDEDEEKVSGRYH 629
Query: 454 QQRLA 458
++LA
Sbjct: 630 SEKLA 634
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 8e-26
Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 4/223 (1%)
Query: 354 DLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIK-HGYLSDVRLGTALVDIYAKGGDL 412
+L + D + C +E G ++ A+ H L VRLG A++ ++ + G+L
Sbjct: 79 ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG-VRLGNAMLSMFVRFGEL 137
Query: 413 KSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLS 472
A + + +N ++ G+ + DE + L+ + AG+ PD TF +L
Sbjct: 138 VHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDE--ALCLYHRMLWAGVRPDVYTFPCVLR 195
Query: 473 LSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVS 532
L RGR +HA+ ++ G+ DV V NALITMY KCG + A +F + RD +S
Sbjct: 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS 255
Query: 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQAC 575
WNAM+S Y +G L LF M+ PD ++I V+ AC
Sbjct: 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 445 EEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNA 504
E+ + +L S Q L + D + L L + + G + + ++ + + V +GNA
Sbjct: 68 EQALKLLESMQELR-VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126
Query: 505 LITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD 564
+++M+ + G + A+ +F + +RD+ SWN ++ YA G AL L+ M G PD
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD 186
Query: 565 DISILGVLQAC 575
+ VL+ C
Sbjct: 187 VYTFPCVLRTC 197
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 529 DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI--SIL 569
D+V++N ++ Y G + AL LF EMK+ G P+ SIL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 5e-06
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGF 561
V++N+++S Y G + AL LF+EMK +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD 565
V++N ++ G + AL LF+EMK G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 97 NNLINLYAKFNRLDVAQKLFDGMLVR----SAITWTSLIKGY 134
N LI+ Y K +++ A KLF+ M R + T++ LI G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 3e-04
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 223 KDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVC 270
DV N +I Y K G+ E A +F + +PN YT++ +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 5e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 530 IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP 563
+ ++NA+L A A G AL + EEMK G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 498 DVIVGNALITMYAKCGSIDGAFQIF-----KGISDRDIVSWNAMLSAYA 541
DV+ N LI Y K G ++ A ++F +GI ++ +++ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK-PNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 12/188 (6%)
Query: 237 KAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREIS 296
K+G+ + F VF ++++ E N +TF +I C V + +G+ V +
Sbjct: 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543
Query: 297 VGNAIVTMYGKHGMSEEAERMFDAISER---------NLISWTALISGYVRSGHGGKAIN 347
V NA+++ G+ G +R FD ++E + I+ AL+ +G +A
Sbjct: 544 VFNALISACGQSG---AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600
Query: 348 GFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYA 407
+ + I ++ CS + + L ++ K G D +ALVD+
Sbjct: 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660
Query: 408 KGGDLKSA 415
GDL A
Sbjct: 661 HAGDLDKA 668
|
Length = 1060 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 754 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.7 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.62 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.48 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.47 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.45 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.43 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.42 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.41 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.41 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.3 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.29 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.27 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.26 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.26 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.26 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.25 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.24 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.23 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.22 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.19 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.19 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.16 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.14 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.13 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.12 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.12 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.11 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.09 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.06 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.04 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.03 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.0 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.0 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.93 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.93 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.91 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.9 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.87 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.84 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.83 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.83 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.82 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.82 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.81 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.81 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.76 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.75 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.73 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.73 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.73 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.71 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.66 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.66 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.64 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.62 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.58 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.57 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.57 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.56 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.52 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.51 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.51 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.46 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.45 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.45 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.44 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.4 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.39 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.39 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.38 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.38 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.35 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.35 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.33 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.32 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.28 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.18 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.14 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.13 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.09 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.01 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.0 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.98 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.97 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.96 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.96 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.96 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.96 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.95 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.94 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.91 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.88 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.87 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.87 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.86 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.86 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.8 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.73 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.73 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.72 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.7 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.67 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.67 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.65 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.63 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.63 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.62 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.61 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.6 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.59 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.58 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.53 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.51 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.51 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.51 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.49 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.46 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.43 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.38 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.37 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.37 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.35 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.28 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.26 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.26 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.25 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.21 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.19 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.17 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.17 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.16 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.14 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.11 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.1 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.1 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.08 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.06 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.04 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.02 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.0 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.0 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.0 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.95 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.95 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.92 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.86 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.81 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.81 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.8 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.79 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.7 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.69 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.6 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.54 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.46 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.4 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.39 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.37 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.33 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.29 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.21 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.21 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.12 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.06 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.04 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.97 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.96 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.92 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.87 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.84 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.8 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.76 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.74 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 95.69 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.67 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.58 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.57 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.55 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.53 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.5 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.39 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.32 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.29 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.25 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.15 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.13 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.05 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.03 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.69 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.59 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.49 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.32 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.28 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.17 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.1 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.08 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.0 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.95 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.92 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.9 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.77 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.65 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.64 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.52 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.49 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.45 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.41 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.37 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.32 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.24 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.05 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.99 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.89 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 92.84 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.57 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.48 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.23 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.15 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.15 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.97 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.84 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.84 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.41 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.39 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.35 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.07 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.92 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 90.84 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.51 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.44 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.25 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.49 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.45 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.43 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.39 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.35 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.07 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 88.99 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.93 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 88.91 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.9 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.45 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 88.3 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.24 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 87.51 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 87.24 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.82 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.48 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.05 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.94 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.9 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.86 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.81 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 85.68 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.63 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 85.58 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.41 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.37 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 85.19 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.85 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.8 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.78 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.42 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 84.36 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.08 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 83.93 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.68 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.48 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.34 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 83.15 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 82.52 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 81.97 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 81.81 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.73 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.14 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 81.02 | |
| PRK09687 | 280 | putative lyase; Provisional | 80.44 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-115 Score=995.18 Aligned_cols=697 Identities=30% Similarity=0.545 Sum_probs=687.4
Q ss_pred ccccccCCCCCcHHHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCCCChhhHH
Q 004425 49 VSCSERTLLFNDWPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWT 128 (754)
Q Consensus 49 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 128 (754)
+...+.+|+..+|..++++|.+.+.+..+..++..+.+.|..++..++|+||.+|++.|+++.|.++|++|++||.++||
T Consensus 77 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n 156 (857)
T PLN03077 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN 156 (857)
T ss_pred HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcC
Q 004425 129 SLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSG 208 (754)
Q Consensus 129 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 208 (754)
+||++|++.|++++|+++|++|...|+.||..||+.+|++|+..+++..+.+++..|.+.|+.||..++|+||.+|+++|
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH
Q 004425 209 CFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVK 288 (754)
Q Consensus 209 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 288 (754)
++++|.++|++|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.+
T Consensus 237 ~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHH
Q 004425 289 FGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVI 368 (754)
Q Consensus 289 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 368 (754)
.|+.||..+||+|+.+|+++|++++|.++|++|..+|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll 396 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHH
Q 004425 369 DGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDV 448 (754)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A 448 (754)
.+|++.|+++.|.++++.+.+.|+.++..++++|+++|+++|++++|.++|++|.++|.++||++|.+|++ .|+.++|
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~--~g~~~eA 474 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL--NNRCFEA 474 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH--CCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 004425 449 MVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR 528 (754)
Q Consensus 449 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 528 (754)
+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..++|+|+++|+++|++++|.++|+.+ .+
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~ 552 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EK 552 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CC
Confidence 999999986 6999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHH
Q 004425 529 DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMV 608 (754)
Q Consensus 529 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 608 (754)
|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..||++|+
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999996689999999999999
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 004425 609 DLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 688 (754)
++|+++|++++|.+++++|+.+||..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|..|+++|+..|+|++|.+
T Consensus 633 ~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCCCCCc
Q 004425 689 VRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMKLKVKDSSA 749 (754)
Q Consensus 689 ~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 749 (754)
+++.|+++|++|+||+|||++++++|.|++||++||+.++||.+|+.|..+|++.||.|+.
T Consensus 713 vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 713 VRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred HHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999974
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-86 Score=741.30 Aligned_cols=531 Identities=31% Similarity=0.525 Sum_probs=519.9
Q ss_pred CCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCC-CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHH
Q 004425 222 YKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSD-FEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNA 300 (754)
Q Consensus 222 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 300 (754)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3467789999999999999999999999999865 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHH
Q 004425 301 IVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELG 380 (754)
Q Consensus 301 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 380 (754)
|+++|+++|++++|.++|++|.+||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC
Q 004425 381 LQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGM 460 (754)
Q Consensus 381 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~ 460 (754)
.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|..+|.++||+||.+|++ .|+.++|+++|++|.+.|+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~--~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL--HGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHH
Q 004425 461 EPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAY 540 (754)
Q Consensus 461 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 540 (754)
.||..||++++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHH
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 620 (754)
+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998789999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCcc
Q 004425 621 MNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSK 700 (754)
Q Consensus 621 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 700 (754)
.+++++|+..|+..+|++|+.+|+.+|+.+.|+.+++++++++|++..+|..|+++|++.|+|++|.+++++|+++|++|
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCCCCC-ccccCC
Q 004425 701 EAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMKLKVKDSS-AFELQD 754 (754)
Q Consensus 701 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~ 754 (754)
.||+|||++++++|.|++||++||+..+||.+|++|..+|++.||+|+ +.+++|
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~ 616 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPD 616 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhcc
Confidence 999999999999999999999999999999999999999999999997 444443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-81 Score=720.05 Aligned_cols=573 Identities=24% Similarity=0.422 Sum_probs=545.6
Q ss_pred CCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHH
Q 004425 121 VRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSL 200 (754)
Q Consensus 121 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 200 (754)
.++..++|.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++++|.+.+.++.+.+++..+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHH
Q 004425 201 ISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGK 280 (754)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 280 (754)
|++|+++|+++.|.++|++|+++|+++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccC
Q 004425 281 QLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCD 360 (754)
Q Consensus 281 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 360 (754)
+++..+.+.|+.||..++|+|+++|+++|++++|.++|++|.++|+++||++|.+|++.|++++|+++|.+|.+.|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhh
Q 004425 361 SSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEK 440 (754)
Q Consensus 361 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 440 (754)
..||+.++.+|++.|+++.|.+++..+.+.|+.||..+|++|+.+|+++|++++|.++|++|..+|.++||++|.+|++
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~- 366 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK- 366 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004425 441 IADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQ 520 (754)
Q Consensus 441 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 520 (754)
.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++|+|+++|+++|++++|.+
T Consensus 367 -~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 367 -NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred -CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC
Q 004425 521 IFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI 600 (754)
Q Consensus 521 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 600 (754)
+|++|.++|+++||++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+ .|+.++
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~ 523 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFD 523 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCcc
Confidence 99999999999999999999999999999999999986 6999999999999999999999999999999998 699999
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcc--CCCCcchHHHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDL--EPKDAGSFILVSNMYA 678 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~ 678 (754)
..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|..+++++.+. .|+ ..+|..+...|.
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~ 600 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACS 600 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHh
Confidence 888888888888888888888888887 678888888888888888888888888887764 444 667777778888
Q ss_pred hcCCchHHHHHHHHHh-hCCCcc
Q 004425 679 GQGMLDEAAKVRTTMN-DLRLSK 700 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~-~~~~~~ 700 (754)
+.|++++|.++|+.|. ..|+..
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCC
Confidence 8888888888888887 456543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=613.79 Aligned_cols=522 Identities=16% Similarity=0.200 Sum_probs=469.5
Q ss_pred CCCChhhhHHHHHHHHccCChhHHHHHhccCCCCC-----hhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHH
Q 004425 89 SQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRS-----AITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCS 163 (754)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 163 (754)
..++...|..++..|++.|++++|.++|++|+.++ ...++.++.+|.+.|..++|+.+|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 34566778888899999999999999999996654 45567778889999999999999999864 8999999
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCC----CCCcchHHHHHHHHHHcC
Q 004425 164 VILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLA----YKDVRCVNFMILEYNKAG 239 (754)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g 239 (754)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|. .||..+||.||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999998 578999999999999999
Q ss_pred ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH--hcCCCChhHHHHHHHHHHhcCChHHHHHH
Q 004425 240 ESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVK--FGVVREISVGNAIVTMYGKHGMSEEAERM 317 (754)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 317 (754)
++++|+++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HHccCC----CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCC
Q 004425 318 FDAISE----RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYL 393 (754)
Q Consensus 318 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 393 (754)
|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|+.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999975 5779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHhcCC----CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004425 394 SDVRLGTALVDIYAKGGDLKSARMLLDGFS----CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSR 469 (754)
Q Consensus 394 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 469 (754)
||..+|++||.+|+++|++++|.++|++|. .+|..+||.||.+|++ .|+.++|+++|++|.+.|+.||..||+.
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k--~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE--GNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 999999999999999999999999999995 7899999999999999 9999999999999999999999999999
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH------HhccCCCChhHHHHHHHHHHHc
Q 004425 470 LLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI------FKGISDRDIVSWNAMLSAYALH 543 (754)
Q Consensus 470 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~------~~~~~~~~~~~~~~li~~~~~~ 543 (754)
++.+|++.|+++.|.+++.+|.+.|+.||..+|++++.+|.+ ++++|..+ |+.+...+...|
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w---------- 827 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKW---------- 827 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccch----------
Confidence 999999999999999999999999999999999999976432 34444444 333322333333
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHH
Q 004425 544 GLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 544 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
.++|+.+|++|.+.|+.||..||+.++.+++..+..+.+..+++.|.. .+..|+..+|+++++++++. .++|..+
T Consensus 828 --~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 828 --TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHH
Confidence 456999999999999999999999999888888888888888888766 47778888999999998542 4789999
Q ss_pred HHhC---CCCCCH
Q 004425 624 INSS---PFSESP 633 (754)
Q Consensus 624 ~~~~---~~~p~~ 633 (754)
+++| ++.|+.
T Consensus 903 ~~em~~~Gi~p~~ 915 (1060)
T PLN03218 903 LEEAASLGVVPSV 915 (1060)
T ss_pred HHHHHHcCCCCCc
Confidence 9987 566654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=606.04 Aligned_cols=474 Identities=22% Similarity=0.323 Sum_probs=461.0
Q ss_pred CCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHH
Q 004425 121 VRSAITWTSLIKGYLDDGDYESVLGIACDMYRSE-EKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTS 199 (754)
Q Consensus 121 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 199 (754)
.++..+|+.+|.++++.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4477899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHH
Q 004425 200 LISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEG 279 (754)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 279 (754)
|+++|+++|++++|.++|++|+++|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCccc
Q 004425 280 KQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICC 359 (754)
Q Consensus 280 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 359 (754)
.+++..+.+.|+.+|..+|++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhh
Q 004425 360 DSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFME 439 (754)
Q Consensus 360 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 439 (754)
|..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|..+|.++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHH
Q 004425 440 KIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIK-TGYAADVIVGNALITMYAKCGSIDGA 518 (754)
Q Consensus 440 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A 518 (754)
.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|
T Consensus 404 --~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 404 --HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred --cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 999999999999999999999999999999999999999999999999986 69999999999999999999999999
Q ss_pred HHHHhccC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 004425 519 FQIFKGIS-DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYG 596 (754)
Q Consensus 519 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 596 (754)
.+++++|. +|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.+ .|
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g 558 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KG 558 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cC
Confidence 99999996 58999999999999999999999999999976 6676 46999999999999999999999999999 58
Q ss_pred CCC
Q 004425 597 LRP 599 (754)
Q Consensus 597 ~~p 599 (754)
+..
T Consensus 559 ~~k 561 (697)
T PLN03081 559 LSM 561 (697)
T ss_pred Ccc
Confidence 754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-68 Score=592.03 Aligned_cols=532 Identities=15% Similarity=0.155 Sum_probs=482.5
Q ss_pred cCCCCCcHHHHHHHhccCCCcchhHHHHHHHHHhCC-CCChhhhHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHH
Q 004425 54 RTLLFNDWPQLVKISIGSGDLKLGQAVHAFLLKSGS-QNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIK 132 (754)
Q Consensus 54 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 132 (754)
..++...|..++..|.+.|++..|.++|+.|.+.|+ .++..+++.++..|.+.|.+++|..+|..|+.||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345677899999999999999999999999999995 5677888999999999999999999999999999999999999
Q ss_pred HHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhH
Q 004425 133 GYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFRE 212 (754)
Q Consensus 133 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 212 (754)
+|++.|+++.|.++|++|.+.|+.||..+|+++|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCC----CCCcchHHHHHHHHHHcCChhHHHHHHHHhHH--CCCCCCcchHHHHHHHHhccCCchHHHHHHHHH
Q 004425 213 AENVFRGLA----YKDVRCVNFMILEYNKAGESEMAFHVFVHLLS--SDFEPNDYTFTNVISVCYENLGVEEGKQLHGLA 286 (754)
Q Consensus 213 A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 286 (754)
|.++|++|. .||..+||.||.+|++.|++++|.++|++|.. .|+.||..||+++|.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999996 46999999999999999999999999999986 679999999999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC----CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChh
Q 004425 287 VKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE----RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSS 362 (754)
Q Consensus 287 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 362 (754)
.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999999974 799999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC----CCChhhHHHHHHHHh
Q 004425 363 CLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS----CKYTAEFNAILSGFM 438 (754)
Q Consensus 363 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 438 (754)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+|+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 689999999999999
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 004425 439 EKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGA 518 (754)
Q Consensus 439 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 518 (754)
+ .|+.++|.++|.+|.+.|+.||..+|+.++..|.+ .++++..+.+.+...+. ...+...+..+.|
T Consensus 766 k--~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~~A 831 (1060)
T PLN03218 766 R--KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDS----------GRPQIENKWTSWA 831 (1060)
T ss_pred H--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhc----------cccccccchHHHH
Confidence 9 99999999999999999999999999999977642 45555544433332110 0111122334568
Q ss_pred HHHHhccCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004425 519 FQIFKGISD----RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQI 594 (754)
Q Consensus 519 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 594 (754)
..+|++|.+ ||..+|+.++.++++.+..+.+..+++.|...+..|+..+|+.++.+|++. .++|..+|++|..
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~- 908 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS- 908 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH-
Confidence 888888853 788888888888888888888888888888888888888888888887432 3678888888888
Q ss_pred hCCCCCcc
Q 004425 595 YGLRPILE 602 (754)
Q Consensus 595 ~~~~p~~~ 602 (754)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 68888874
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=343.55 Aligned_cols=626 Identities=12% Similarity=0.073 Sum_probs=391.2
Q ss_pred CCcHHHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCC---CChhhHHHHHHHH
Q 004425 58 FNDWPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLV---RSAITWTSLIKGY 134 (754)
Q Consensus 58 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 134 (754)
...+..+...+...|++.+|..+++.+.+.. +.+...+..+...+...|++++|...|+.... .+..++..++..+
T Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 237 (899)
T TIGR02917 159 LYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATIL 237 (899)
T ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3455566666677777777777777766543 34555666666666677777777777766522 2445566666666
Q ss_pred hcCCChhHHHHHHHHHHhCCCC--------------------------------CC-hhhHHHHHHHhccCCChHHHHHH
Q 004425 135 LDDGDYESVLGIACDMYRSEEK--------------------------------FN-EHTCSVILEACSLLEDRIFGEQI 181 (754)
Q Consensus 135 ~~~~~~~~a~~~~~~m~~~g~~--------------------------------p~-~~t~~~ll~~~~~~~~~~~a~~~ 181 (754)
...|++++|...++.+.+.... |+ ...+..+...+...|+++.|...
T Consensus 238 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 317 (899)
T TIGR02917 238 IEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQY 317 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666655443211 11 01111122233345555555555
Q ss_pred HHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC---CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCC
Q 004425 182 HAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYK---DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEP 258 (754)
Q Consensus 182 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 258 (754)
++.+.+.. +.+...+..+...+.+.|++++|...++.+... +...++.+...+.+.|++++|.++|+++.+... .
T Consensus 318 ~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 395 (899)
T TIGR02917 318 LNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-E 395 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-C
Confidence 55555443 234455555666666666666666666655432 444566666666677777777777766655421 1
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhc---------------------------------CCCChhHHHHHHHHH
Q 004425 259 NDYTFTNVISVCYENLGVEEGKQLHGLAVKFG---------------------------------VVREISVGNAIVTMY 305 (754)
Q Consensus 259 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g---------------------------------~~~~~~~~~~li~~~ 305 (754)
+...+..+...+...|+.++|.+.+..+.+.. .+.+..++..+...|
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 475 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIY 475 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 23334444444455555555555555444432 223444555555555
Q ss_pred HhcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHH
Q 004425 306 GKHGMSEEAERMFDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQ 382 (754)
Q Consensus 306 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 382 (754)
...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+...|+.++|..
T Consensus 476 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 476 LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555432 233444555555555566666666665555432 2234455555555666666666666
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC
Q 004425 383 LHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAG 459 (754)
Q Consensus 383 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g 459 (754)
.++.+.+.+ +.+...+..++..|.+.|++++|..+++.+. +.+...|..+...+.. .|++++|+..|+++.+..
T Consensus 555 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 555 WLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA--AGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhC
Confidence 666665543 3344555566666666777777766666654 3345566667777777 777777777777776542
Q ss_pred CCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHH
Q 004425 460 MEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAM 536 (754)
Q Consensus 460 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 536 (754)
+.+...+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+.+ .+...|..+
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 709 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHH
Confidence 2234556666666777777777777777776543 34456667777777777777777777776643 344566777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCC
Q 004425 537 LSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGR 616 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 616 (754)
...+...|++++|+..|+++.+. .|+..++..+..++.+.|++++|.+.++.+.+ ..+.+...+..++..|.+.|+
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcC
Confidence 77777888888888888887773 45556667777778888888888888888766 344556677788888888888
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 617 LSEAMNLINSS--PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 617 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
+++|.+.|+++ ..++++.+++.+...+...|+ .+|+..+++++++.|+++..+..++.+|...|++++|.+.++++.
T Consensus 786 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 786 YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888766 223467788888888888888 778888888888888888888888888888888888888888876
Q ss_pred hCC
Q 004425 695 DLR 697 (754)
Q Consensus 695 ~~~ 697 (754)
+.+
T Consensus 865 ~~~ 867 (899)
T TIGR02917 865 NIA 867 (899)
T ss_pred hhC
Confidence 644
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=343.71 Aligned_cols=579 Identities=13% Similarity=0.047 Sum_probs=476.2
Q ss_pred HHHccCChhHHHHHhccCCC---CChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHH
Q 004425 102 LYAKFNRLDVAQKLFDGMLV---RSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFG 178 (754)
Q Consensus 102 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 178 (754)
.+...|++++|...|+.... .+...+..+...+.+.|++++|+..++.+.+.. +.+...+..+...+...|+++.|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34455566666665555421 234556666667777777777777777776543 23556666777777777788888
Q ss_pred HHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC---CcchHHHHHHHHHHcCChhHHHHHHHHhHHCC
Q 004425 179 EQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYK---DVRCVNFMILEYNKAGESEMAFHVFVHLLSSD 255 (754)
Q Consensus 179 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 255 (754)
.++++.+.+.. +.+...+..+...+...|++++|.+.|+.+... +...+..++..+.+.|++++|+++++++...
T Consensus 383 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 383 AEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 87777776653 335566667777777778888887777765432 3345666777888889999999998888765
Q ss_pred CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHH
Q 004425 256 FEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTAL 332 (754)
Q Consensus 256 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 332 (754)
.+++..++..+...+...|+.++|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+++.. .+..++..+
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 34467789999999999999999999999998764 44566788899999999999999999999864 467788999
Q ss_pred HHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCH
Q 004425 333 ISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDL 412 (754)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 412 (754)
...+.+.|+.++|...+.++...+ ..+...+..+...+...|+++.|..+++.+.+.. +.+...+..+...|.+.|++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998764 3455677888899999999999999999998754 55678899999999999999
Q ss_pred HHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHH
Q 004425 413 KSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAY 489 (754)
Q Consensus 413 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 489 (754)
++|...|+.+. +.+...|..+...+.. .|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.
T Consensus 618 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAV--MKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999875 4466678889999999 999999999999998753 33467889999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 004425 490 SIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDIS 567 (754)
Q Consensus 490 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 567 (754)
+.+.+ +.+...+..+...|.+.|++++|...|+.+.. |+..++..++.++.+.|++++|.+.++++.+.. +.+...
T Consensus 695 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~ 772 (899)
T TIGR02917 695 LQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL 772 (899)
T ss_pred HHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 98876 56777888899999999999999999998853 666778889999999999999999999999843 235568
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 004425 568 ILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKL 645 (754)
Q Consensus 568 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 645 (754)
+..+...|...|++++|..+|+++.+ ..+++...+..++..+...|+ .+|+++++++ ...| ++..+..+...+..
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 88889999999999999999999987 345567789999999999999 8899999876 3344 67888899999999
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 646 MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
.|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999885
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-25 Score=260.91 Aligned_cols=615 Identities=12% Similarity=0.015 Sum_probs=458.3
Q ss_pred HHHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCC--CCh-hhH----------
Q 004425 61 WPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLV--RSA-ITW---------- 127 (754)
Q Consensus 61 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~-~~~---------- 127 (754)
+..-.+.+...++.+.|.+.+..+.... +.++.++..+...+.+.|+.++|.+.+++..+ |+. ..+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 4455667788899999999999888654 44677888899999999999999999998843 322 221
Q ss_pred ------HHHHHHHhcCCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHH
Q 004425 128 ------TSLIKGYLDDGDYESVLGIACDMYRSEEKFNEH-TCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSL 200 (754)
Q Consensus 128 ------~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 200 (754)
-.+.+.+.+.|++++|+..|+.+.+.. +|+.. ............|+.+.|.+.++.+.+.. +.+...+..+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 223446888999999999999998653 33322 11112222335689999999999999885 4467788889
Q ss_pred HHHhHhcCCHhHHHHHhccCCCCCcc------hH-----------------HHHHHHHHHcCChhHHHHHHHHhHHCCCC
Q 004425 201 ISMYFHSGCFREAENVFRGLAYKDVR------CV-----------------NFMILEYNKAGESEMAFHVFVHLLSSDFE 257 (754)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~~~~------~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 257 (754)
...+...|+.++|+..|+++...... .| ...+..+-.....+.|...+.++......
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 99999999999999999987542211 11 11111111122234555555555443223
Q ss_pred CCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC--CCc---hhHHHH
Q 004425 258 PNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE--RNL---ISWTAL 332 (754)
Q Consensus 258 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l 332 (754)
|+... ...-..+...|++++|...+++.++.. +.+..++..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 268 p~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 268 PAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred cchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 33221 123455677899999999999998864 44778889999999999999999999998764 322 223222
Q ss_pred ------------HHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHH
Q 004425 333 ------------ISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGT 400 (754)
Q Consensus 333 ------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 400 (754)
...+.+.|++++|...|++.++.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 345778999999999999999863 2345566777888999999999999999999864 33455666
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCCCh------------hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH-HHH
Q 004425 401 ALVDIYAKGGDLKSARMLLDGFSCKYT------------AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP-VTF 467 (754)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~ 467 (754)
.+...|. .++.++|..+++.+..... ..+..+...+.. .|++++|++.|++..+. .|+. ..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~--~g~~~eA~~~~~~Al~~--~P~~~~~~ 498 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN--QGKWAQAAELQRQRLAL--DPGSVWLT 498 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH--CCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 6777775 4678999999988763221 124445566777 99999999999999876 5654 566
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----Chh---------HHH
Q 004425 468 SRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR----DIV---------SWN 534 (754)
Q Consensus 468 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~ 534 (754)
..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.|+.++|...++.+... +.. .+.
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l 577 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVL 577 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHH
Confidence 778889999999999999999998754 335555556666778899999999999988642 111 123
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc
Q 004425 535 AMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA 614 (754)
Q Consensus 535 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 614 (754)
.+...+...|+.++|+.+++. .+++...+..+...+.+.|++++|+..|+++.+. -+.+...+..++.+|...
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 456778899999999999872 2334456778888999999999999999999772 334567888999999999
Q ss_pred CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc------hHHHHHHHHHhcCCchHH
Q 004425 615 GRLSEAMNLINSSP-FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG------SFILVSNMYAGQGMLDEA 686 (754)
Q Consensus 615 g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a 686 (754)
|++++|++.++... ..| +...+..+..++...|+.++|...++++++..|+++. .+..++.++...|++++|
T Consensus 651 g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 651 GDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999763 344 5777888889999999999999999999998876543 566789999999999999
Q ss_pred HHHHHHHhh
Q 004425 687 AKVRTTMND 695 (754)
Q Consensus 687 ~~~~~~m~~ 695 (754)
...+++...
T Consensus 731 ~~~y~~Al~ 739 (1157)
T PRK11447 731 LETYKDAMV 739 (1157)
T ss_pred HHHHHHHHh
Confidence 999988753
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-24 Score=256.29 Aligned_cols=586 Identities=12% Similarity=0.022 Sum_probs=433.3
Q ss_pred HHHHHHHccCChhHHHHHhccCC--CC-ChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhH------------
Q 004425 98 NLINLYAKFNRLDVAQKLFDGML--VR-SAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTC------------ 162 (754)
Q Consensus 98 ~li~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~------------ 162 (754)
..+......++.+.|.+.++++. .| |+..+..++..+.+.|+.++|.+.+++..+.. |+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence 34455667899999999998873 33 77889999999999999999999999998764 433322
Q ss_pred -----HHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHH-HHHHHHHhHhcCCHhHHHHHhccCCCC---CcchHHHHHH
Q 004425 163 -----SVILEACSLLEDRIFGEQIHAFAIKSGFENNVFV-GTSLISMYFHSGCFREAENVFRGLAYK---DVRCVNFMIL 233 (754)
Q Consensus 163 -----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 233 (754)
....+.+...|++++|.+.++.+.+.+ +++... ...+.......|+.++|++.|+++... +...+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 223346778899999999999998764 333322 111122223469999999999988753 5557888889
Q ss_pred HHHHcCChhHHHHHHHHhHHCCCC----------------CCcc---hHHHHHHHHhccCCchHHHHHHHHHHHhcCCCC
Q 004425 234 EYNKAGESEMAFHVFVHLLSSDFE----------------PNDY---TFTNVISVCYENLGVEEGKQLHGLAVKFGVVRE 294 (754)
Q Consensus 234 ~~~~~g~~~~A~~~~~~m~~~g~~----------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 294 (754)
.+...|+.++|++.|+++...... ++.. .+...+..+-.....+.+...+....+....|+
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 999999999999999998764211 0000 111111111122223445555555444332333
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHccCC--C-CchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccC-hhhH------
Q 004425 295 ISVGNAIVTMYGKHGMSEEAERMFDAISE--R-NLISWTALISGYVRSGHGGKAINGFLEFLDLGICCD-SSCL------ 364 (754)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~------ 364 (754)
.. .......+...|++++|+..|++..+ | +...+..+...|.+.|++++|+..|++..+...... ...+
T Consensus 270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 22 12345667789999999999998865 3 667889999999999999999999999887542211 1111
Q ss_pred ------HHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHH
Q 004425 365 ------ATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILS 435 (754)
Q Consensus 365 ------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 435 (754)
......+.+.|++++|...++++++.. +.+...+..+...|...|++++|++.|++.. ..+...+..+..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 112345678999999999999999864 3456677788999999999999999999876 344556666666
Q ss_pred HHhhhhcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004425 436 GFMEKIADDEEDVMVLFSQQRLAGME--------PDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALIT 507 (754)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 507 (754)
.|. .++.++|+.+++.+...... .....+..+...+...|++++|.+.++++++.. +-+..++..+..
T Consensus 428 l~~---~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~ 503 (1157)
T PRK11447 428 LYR---QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQ 503 (1157)
T ss_pred HHH---hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 664 45789999988776432100 001234456677888999999999999999865 346677888999
Q ss_pred HHHhcCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHH
Q 004425 508 MYAKCGSIDGAFQIFKGISD--R-DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI---------SILGVLQAC 575 (754)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~ 575 (754)
.|.+.|++++|...|+++.+ | +...+..+...+...|+.++|+..++++......++.. .+..+...+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999998743 3 44555556666778999999999998865433333322 233456678
Q ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 004425 576 IYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSI 653 (754)
Q Consensus 576 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 653 (754)
...|+.++|..+++ ..+.+...+..+...|.+.|++++|++.+++. ...| ++..+..++..+...|+.++|+
T Consensus 584 ~~~G~~~eA~~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 89999999999986 13445667788999999999999999999876 3445 6889999999999999999999
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 654 LASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 654 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
..++++.+..|+++..+..++.++...|++++|...++++.....
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 999999999999999999999999999999999999999876543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-21 Score=216.86 Aligned_cols=380 Identities=10% Similarity=-0.017 Sum_probs=254.7
Q ss_pred HHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHH
Q 004425 301 IVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELG 380 (754)
Q Consensus 301 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 380 (754)
++..+.+.++++.++++.+ ....+. ..-.-..+....+...++...+..|-+.. .-+....--+---..+.|+.++|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a 395 (987)
T PRK09782 319 TLPVLLKEGQYDAAQKLLA-TLPANE-MLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREA 395 (987)
T ss_pred HHHHHHhccHHHHHHHHhc-CCCcch-HHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 3666777788887776633 222222 11111112223456667777676666541 11222222233334567888888
Q ss_pred HHHHHHHHHh-C-CCcchhHHHHHHHHHHhCCC---HHHHHHH-------------------------HhcCC---CC--
Q 004425 381 LQLHGFAIKH-G-YLSDVRLGTALVDIYAKGGD---LKSARML-------------------------LDGFS---CK-- 425 (754)
Q Consensus 381 ~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~-------------------------~~~~~---~~-- 425 (754)
.++++..... + -..+.....-|+..|.+.+. ...+..+ +.... ..
T Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~ 475 (987)
T PRK09782 396 ADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSY 475 (987)
T ss_pred HHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCC
Confidence 8888887762 1 22344455577777777665 2223222 11111 12
Q ss_pred ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHH
Q 004425 426 YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNAL 505 (754)
Q Consensus 426 ~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 505 (754)
+...|..+...+.. ++.++|+..+.+.... .|+......+..++...|++++|...++.+... +|+...+..+
T Consensus 476 ~~~a~~~LG~~l~~---~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l 548 (987)
T PRK09782 476 DAAAWNRLAKCYRD---TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA 548 (987)
T ss_pred CHHHHHHHHHHHHh---CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence 34455555555543 6777788877777765 466554444455556888999998888887554 3444455667
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCChhHHHH---HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004425 506 ITMYAKCGSIDGAFQIFKGISDRDIVSWNA---MLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSE 582 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 582 (754)
...+.+.|++++|...|+...+.+...++. +.......|++++|+..+++.++ ..|+...+..+..++.+.|+++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHH
Confidence 778888899999999888776543322222 23333445899999999998888 5677778888888888999999
Q ss_pred HHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 004425 583 GGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRL 659 (754)
Q Consensus 583 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 659 (754)
+|...+++... ..|+ ...+..+..++...|++++|++.+++. ...| ++..+..+..++...|++++|+..++++
T Consensus 627 eA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 627 AAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999988866 3444 567778888888899999999888865 3445 6888888889999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 660 LDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 660 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++++|+++......+++..+..+++.|.+.+++--.
T Consensus 704 l~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 704 IDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999888888888888888888888887775543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-20 Score=209.72 Aligned_cols=559 Identities=11% Similarity=-0.031 Sum_probs=363.2
Q ss_pred CChhHHHHHhccCCC--C-ChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHH
Q 004425 107 NRLDVAQKLFDGMLV--R-SAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHA 183 (754)
Q Consensus 107 ~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 183 (754)
|++++|...|+...+ | +..++..|...|.+.|+.++|+..+++..+. .|+...|..++..+ ++.+.|..+++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHH
Confidence 666666666666522 2 4556666666667777777777776666554 23333333333222 66666666666
Q ss_pred HHHHHCCCCcHHHHHHHHHH--------hHhcCCHhHHHHHhccCCCCC--cc-hHHHHHHHHHHcCChhHHHHHHHHhH
Q 004425 184 FAIKSGFENNVFVGTSLISM--------YFHSGCFREAENVFRGLAYKD--VR-CVNFMILEYNKAGESEMAFHVFVHLL 252 (754)
Q Consensus 184 ~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 252 (754)
++.+.. +.+..++..+... |.+.+...++++ .+ ...++ .. ..-.+...|.+.|++++|++++.++.
T Consensus 133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr-~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DA-TFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-Hh-hhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 666654 2234444444443 666555555555 22 22222 22 23333667777777777777777777
Q ss_pred HCCCCCCcchHHHHHHHHhc-cCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC-----CCc
Q 004425 253 SSDFEPNDYTFTNVISVCYE-NLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE-----RNL 326 (754)
Q Consensus 253 ~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~ 326 (754)
+.+.. +..-...+-.++.. .++ +.+..++.. .+..+..+...+.+.|.+.|+.++|.++++++.. |..
T Consensus 210 k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 76432 22224444445554 244 555555332 3335666777777777777777777777777653 111
Q ss_pred hh------------------------------HHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCC
Q 004425 327 IS------------------------------WTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSN 376 (754)
Q Consensus 327 ~~------------------------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 376 (754)
.+ .-.++..+.+.++++.+.++. ...|.......-..+....+.
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHhhccccCc
Confidence 11 112255566677777555442 134444432111122233466
Q ss_pred hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCC--CC----hhhHHHHHHHHhhhhcCC---HHH
Q 004425 377 LELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSC--KY----TAEFNAILSGFMEKIADD---EED 447 (754)
Q Consensus 377 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~---~~~ 447 (754)
..++...+..|.+.. +-+.....-+.-...+.|+.++|..+|++.-. ++ ...-+-++..|.. .+. ..+
T Consensus 358 ~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~ 434 (987)
T PRK09782 358 KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES--HPYLATPAK 434 (987)
T ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh--CCcccchHH
Confidence 777777777776642 22334444444446678999999999987753 21 2234466677766 544 333
Q ss_pred HHHH----------------------HHHHHH-cCCCC---CHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhH
Q 004425 448 VMVL----------------------FSQQRL-AGMEP---DPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIV 501 (754)
Q Consensus 448 A~~~----------------------~~~m~~-~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 501 (754)
++.+ +..... .+..| +...|..+..++.. ++.++|...+....... |+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHH
Confidence 3333 111111 12223 34556666655555 78888999888877654 55444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc
Q 004425 502 GNALITMYAKCGSIDGAFQIFKGISD--RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYS 578 (754)
Q Consensus 502 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~ 578 (754)
...+...+...|++++|...|+++.. ++...+..+..++.+.|+.++|...+++.++. .|+.. .+..+...+...
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhC
Confidence 44445556789999999999997753 45556777888899999999999999999984 45543 333444556677
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 004425 579 GLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILAS 656 (754)
Q Consensus 579 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 656 (754)
|++++|...+++..+ +.|+...+..+..++.+.|+.++|++.+++. ...| ++..+..+..++...|+.++|+..+
T Consensus 590 Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999965 5677888999999999999999999999876 4556 5888899999999999999999999
Q ss_pred HHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 657 KRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 657 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+++++++|+++..+..++.+|...|++++|+..+++..+.
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999987653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-21 Score=189.63 Aligned_cols=448 Identities=14% Similarity=0.089 Sum_probs=345.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 004425 230 FMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHG 309 (754)
Q Consensus 230 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 309 (754)
.+..-..+.|++++|++.-...-+.+. -+..+...+-..+.+..+.+...+--....+. .+.-..+|+.+.+.+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence 344455677888888776554443321 11122222223334444444433322222222 2334667888888888899
Q ss_pred ChHHHHHHHHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHh-cccCChHHHHHHHH
Q 004425 310 MSEEAERMFDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGC-SVCSNLELGLQLHG 385 (754)
Q Consensus 310 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~ 385 (754)
++++|+..++.+.+ ..+..|-.+..++...|+.+.|.+.|.+.++ +.|+.....+-+..+ ...|++++|...+-
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999888865 3567888888999999999999999988876 466666554444333 33688888888888
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCC---hhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 004425 386 FAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKY---TAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEP 462 (754)
Q Consensus 386 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p 462 (754)
+.++... -=...|+.|...+-..|+...|..-|++...-| ...|-.|...|.. .+.+++|+..|.+.... .|
T Consensus 209 kAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke--~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 209 KAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE--ARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH--HhcchHHHHHHHHHHhc--CC
Confidence 8776431 223567778888888999999999998876433 3467777888888 99999999998887754 67
Q ss_pred CH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhHHHHHHH
Q 004425 463 DP-VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--R-DIVSWNAMLS 538 (754)
Q Consensus 463 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 538 (754)
+. ..+..+...|-.+|.++.|...+++.++.. +.-+..|+.|.+++...|++.+|.+.|.+... | ...+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 65 577777778889999999999999998864 23467899999999999999999999998864 3 4568899999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCC
Q 004425 539 AYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGR 616 (754)
Q Consensus 539 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 616 (754)
.|...|.+++|..+|....+ +.|.- ..++.|...|-.+|++++|+..|++. ..+.|+ ...|+.|...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea---lrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEA---LRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHH---HhcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999998 88876 48999999999999999999999998 468898 4689999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 617 LSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 617 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
.+.|.+.+.+. .+.|. ....+.|...++-.|++.+|+..|+.+++++|+.+.+|..+..++--..+|.+-.+.+++
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 99999999865 66674 778889999999999999999999999999999999999999988777777774443333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-20 Score=183.60 Aligned_cols=417 Identities=12% Similarity=0.106 Sum_probs=334.4
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcC
Q 004425 264 TNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTALISGYVRSG 340 (754)
Q Consensus 264 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 340 (754)
..|..-..+.|++.+|++--...-+.. +.+....-.+-..+....+.+....--....+ .-..+|..+...+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 344455567788888876544433221 22222222233445555555554332222222 23478999999999999
Q ss_pred ChhHHHHHHHHhHhcCccc-ChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchh-HHHHHHHHHHhCCCHHHHHHH
Q 004425 341 HGGKAINGFLEFLDLGICC-DSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVR-LGTALVDIYAKGGDLKSARML 418 (754)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~ 418 (754)
+.++|+.+++.+++. +| ....|..+..++...|+.+.|.+.|.+.++. .|+.. ..+-+.......|++++|...
T Consensus 131 ~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 999999999999985 45 4567889999999999999999999988874 35443 334455556668999999998
Q ss_pred HhcCCC--C-ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcccchHHHHHHHHHHHHhC
Q 004425 419 LDGFSC--K-YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP-VTFSRLLSLSASQACLVRGRSLHAYSIKTG 494 (754)
Q Consensus 419 ~~~~~~--~-~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 494 (754)
+.+..+ + -.+.|+.|...+-. .|+.-.|+..|++.... .|+- ..|..|...|...+.++.|...+.++....
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~--~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNA--QGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhh--cchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 877653 2 34689999999999 99999999999998854 6775 578888888888999999988888877643
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHH
Q 004425 495 YAADVIVGNALITMYAKCGSIDGAFQIFKGISD--RD-IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILG 570 (754)
Q Consensus 495 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 570 (754)
+....++..+...|-..|.++-|...|++..+ |+ ..+|+.|..++-..|+..+|...|.+.+. +.|+.. ..+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHH
Confidence 33567777788889999999999999999864 44 46899999999999999999999999998 778774 8899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMA 647 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 647 (754)
|...+...|.+++|..+|....+ +.|. ...++.|...|-.+|++++|+..+++. .++|. ...++.+.+.+...|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh
Confidence 99999999999999999999854 5666 467889999999999999999999865 77886 778999999999999
Q ss_pred ChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 648 NSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 648 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+...|.+.+.+++.++|..++++..|+.+|-..|+..+|...++....
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999987654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-18 Score=185.77 Aligned_cols=421 Identities=12% Similarity=0.029 Sum_probs=273.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004425 227 CVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYG 306 (754)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 306 (754)
.+......+.+.|++++|+..|++... +.|+...|..+..++.+.|++++|.+.+...++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 455566677788888888888888765 35666667777777777777777777777766543 224455666666666
Q ss_pred hcCChHHHHHHHHccCCCC---chhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHH
Q 004425 307 KHGMSEEAERMFDAISERN---LISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQL 383 (754)
Q Consensus 307 ~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 383 (754)
..|++++|+..|......+ ......++..+.. ..+........+. .
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~------------------------- 254 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET--K------------------------- 254 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc--C-------------------------
Confidence 6666666666554332111 0100111111000 1111111111111 0
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCC---hhhHHHHHHHHhh-hhcCCHHHHHHHHHHHHHcC
Q 004425 384 HGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKY---TAEFNAILSGFME-KIADDEEDVMVLFSQQRLAG 459 (754)
Q Consensus 384 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~-~~~~~~~~A~~~~~~m~~~g 459 (754)
+.+...+..+.. |...........-+....+.+ ...+..+...+.. ...+++++|++.|+...+.+
T Consensus 255 ---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 255 ---------PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred ---------CCCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 111111111111 111111111111111110000 0111111111000 11578899999999988764
Q ss_pred -CCCCH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHH
Q 004425 460 -MEPDP-VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWN 534 (754)
Q Consensus 460 -~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 534 (754)
..|+. ..+..+...+...|++++|...++.+++.. +.....|..+...+...|++++|...|+...+ .+...|.
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 403 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY 403 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 33443 466777777888999999999999998764 33456778888899999999999999998753 3567888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh
Q 004425 535 AMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR 613 (754)
Q Consensus 535 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 613 (754)
.+...+...|++++|+..|++.++ +.|+. ..+..+..++.+.|++++|+..|++... ..+.+...+..+..+|..
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH
Confidence 999999999999999999999998 56764 5677788889999999999999999876 234456788899999999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-------HHH-HHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCch
Q 004425 614 AGRLSEAMNLINSS-PFSES-------PLL-WRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLD 684 (754)
Q Consensus 614 ~g~~~~A~~~~~~~-~~~p~-------~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 684 (754)
.|++++|++.+++. ...|+ ... ++.....+...|++++|...++++++++|++...+..++.+|...|+++
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH
Confidence 99999999999874 33332 111 1222223344699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 004425 685 EAAKVRTTMNDL 696 (754)
Q Consensus 685 ~a~~~~~~m~~~ 696 (754)
+|.+.+++..+.
T Consensus 560 eAi~~~e~A~~l 571 (615)
T TIGR00990 560 EALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-16 Score=165.75 Aligned_cols=577 Identities=15% Similarity=0.077 Sum_probs=402.8
Q ss_pred hhHHHHHhccCCCCChhh-HHHHHHH--HhcCCChhHHHHHHHHHHhC--CCCCChhhHHHHHHHhccCCChHHHHHHHH
Q 004425 109 LDVAQKLFDGMLVRSAIT-WTSLIKG--YLDDGDYESVLGIACDMYRS--EEKFNEHTCSVILEACSLLEDRIFGEQIHA 183 (754)
Q Consensus 109 ~~~A~~~~~~~~~~~~~~-~~~li~~--~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 183 (754)
++.|...|......+..- .-.+..+ ....|++..|+.+|...... ..+||+.. .+-.++.+.++.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 578888887774332221 1222333 33568999999999996543 33445432 22345568889999998888
Q ss_pred HHHHHCCCCcHHHHHHHHHHhHhc---CCHhHHHHHhccCC---CCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCC
Q 004425 184 FAIKSGFENNVFVGTSLISMYFHS---GCFREAENVFRGLA---YKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFE 257 (754)
Q Consensus 184 ~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 257 (754)
...+... -++.++-.|--.-... ..+..+..++...- ..|.+..|.|-..|.-.|++..++.+...+...-..
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8876532 1222222222111122 23445555554332 347888999999999999999999999988765311
Q ss_pred --CCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC--C-CchhHHHH
Q 004425 258 --PNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE--R-NLISWTAL 332 (754)
Q Consensus 258 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 332 (754)
.-...|-.+-+++-..|++++|...|.+..+..-.-.+..+-.|..+|.+.|+++.+...|+.+.. | +..+...+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 123458888999999999999999998877654322244556788999999999999999999875 3 34555666
Q ss_pred HHHHHhcC----ChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHH----HhCCCcchhHHHHHHH
Q 004425 333 ISGYVRSG----HGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAI----KHGYLSDVRLGTALVD 404 (754)
Q Consensus 333 i~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~ 404 (754)
...|...+ ..+.|..++.+..+.- ..|...|..+-..+.. ++.......+..+. ..+-.+...+.|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 66666665 4456666666555432 2344555555554444 44444466665544 4666788899999999
Q ss_pred HHHhCCCHHHHHHHHhcCCCC-------Ch-----hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 004425 405 IYAKGGDLKSARMLLDGFSCK-------YT-----AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPV-TFSRLL 471 (754)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~-------~~-----~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll 471 (754)
.+...|.+++|...|++.... +. +|..--+..+... .++++.|.+.|..+... .|+-+ .|..++
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~-l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~ 537 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE-LHDTEVAEEMYKSILKE--HPGYIDAYLRLG 537 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh-hhhhhHHHHHHHHHHHH--CchhHHHHHHhh
Confidence 999999999999999866422 22 1111112222221 67899999999999987 67664 344444
Q ss_pred HHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CChhHHHHHHHHHH-----
Q 004425 472 SLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD-----RDIVSWNAMLSAYA----- 541 (754)
Q Consensus 472 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~----- 541 (754)
......++..+|...++.+...+ ..++..++.+.+.|.+...+..|..-|+.+.+ +|..+.-+|.+.|.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 33345577888999988888754 45677777788899999999989886665532 45555555555443
Q ss_pred -------HcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh
Q 004425 542 -------LHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR 613 (754)
Q Consensus 542 -------~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 613 (754)
..+..++|+++|.+.++ ..| |...-+.+.-.++..|++.+|..+|.+..+. ..-...+|-.++.+|..
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVE 692 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHH
Confidence 23457889999999998 445 5567788888899999999999999999984 22345678899999999
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH-----------
Q 004425 614 AGRLSEAMNLINSS----PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA----------- 678 (754)
Q Consensus 614 ~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~----------- 678 (754)
+|++-.|+++|+.. ..+.++.+...|..++...|.+.+|...+..+..+.|.|+.....++-+..
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k 772 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK 772 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc
Confidence 99999999999754 334578999999999999999999999999999999999988777776543
Q ss_pred --------hcCCchHHHHHHHHHhhCCC
Q 004425 679 --------GQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 679 --------~~g~~~~a~~~~~~m~~~~~ 698 (754)
..+..++|.++|+.|...+-
T Consensus 773 ~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33456778888888866444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-18 Score=181.58 Aligned_cols=290 Identities=11% Similarity=0.050 Sum_probs=200.6
Q ss_pred HhCCCHHHHHHHHhcCCC---CChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcccch
Q 004425 407 AKGGDLKSARMLLDGFSC---KYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPD---PVTFSRLLSLSASQACL 480 (754)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~ 480 (754)
...|++++|...|+++.. .+..++..+...+.. .|++++|+.+++.+...+..++ ...+..+...+...|++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRR--RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH--cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555555555554431 222344555555555 6666666666666655322111 13455566666666777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--C------hhHHHHHHHHHHHcCChHHHHHH
Q 004425 481 VRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR--D------IVSWNAMLSAYALHGLGKGALLL 552 (754)
Q Consensus 481 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~ 552 (754)
+.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.++.+.+. + ...|..+...+.+.|++++|+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777666542 345566677777777777777777777766431 1 12355677778888999999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 004425 553 FEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFS 630 (754)
Q Consensus 553 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 630 (754)
|+++.+. .|+. ..+..+...+.+.|++++|.++|+++.+. +-......+..++.+|.+.|++++|.+.++++ ...
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9988873 4543 46777778888899999999999988762 21122456778888999999999999988876 445
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh---cCCchHHHHHHHHHhhCCCccCCc
Q 004425 631 ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG---QGMLDEAAKVRTTMNDLRLSKEAG 703 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 703 (754)
|+...+..++..+...|+.++|...++++++..|++.. +..+...+.. .|+.+++..++++|.+++++.+|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 77667788889999999999999999999999999764 4444444443 569999999999999989988887
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-15 Score=159.64 Aligned_cols=639 Identities=13% Similarity=0.054 Sum_probs=430.5
Q ss_pred CchhHHHHHhhhccccccccCCCCCcHHHHHHHhccCCCcchhHHHHHHHHHhCC----CCChh---hhHHHHHHHHcc-
Q 004425 35 NPKSQVAYLCSISSVSCSERTLLFNDWPQLVKISIGSGDLKLGQAVHAFLLKSGS----QNDTF---EANNLINLYAKF- 106 (754)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~---~~~~li~~~~~~- 106 (754)
.+...+.++...+ -...+|..+-..|...|..+++..+++.-.-..- .+... .++.|-.-|+..
T Consensus 26 D~~ev~~IL~~e~--------a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a 97 (1018)
T KOG2002|consen 26 DATEVLSILKAEQ--------APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLA 97 (1018)
T ss_pred ChHHHHHHHHHhc--------CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHH
Confidence 4555555555333 1335688888899999999998888776551110 11111 122222222111
Q ss_pred ----------CChhHHHHHhccCCCC-----ChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhc-
Q 004425 107 ----------NRLDVAQKLFDGMLVR-----SAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACS- 170 (754)
Q Consensus 107 ----------~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~- 170 (754)
..+..|..+|+....- ....+...........+.+.|...|....+.. ++|. ...+.++|.
T Consensus 98 ~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ 174 (1018)
T KOG2002|consen 98 MKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNI--LALLGKARIA 174 (1018)
T ss_pred HHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-Ccch--HHHHHHHHHH
Confidence 1234445555543221 21222222112222223588999998887653 2232 334445554
Q ss_pred -cCCChHHHHHHHHHHHHH--CCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHH---HHc---CCh
Q 004425 171 -LLEDRIFGEQIHAFAIKS--GFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEY---NKA---GES 241 (754)
Q Consensus 171 -~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~~---g~~ 241 (754)
..+++..|..+|...... ...||+.+-.. .++.++|+.+.|...|.+..+-|...-++++.-. ... ..+
T Consensus 175 ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 175 YNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred hccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHH
Confidence 668999999999996664 34666654332 5677899999999999988876665444444321 222 234
Q ss_pred hHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCChHHHHHHHH
Q 004425 242 EMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVR--EISVGNAIVTMYGKHGMSEEAERMFD 319 (754)
Q Consensus 242 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 319 (754)
..++.++...-... .-|++..+.|.+.+.-.|++..+..+...+....... -...|--+.++|-..|++++|...|.
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 55565555544332 2366788889999999999999999999988765322 22346678899999999999999998
Q ss_pred ccCC--CC--chhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccC-hhhHHHHHHHhcccC----ChHHHHHHHHHHHHh
Q 004425 320 AISE--RN--LISWTALISGYVRSGHGGKAINGFLEFLDLGICCD-SSCLATVIDGCSVCS----NLELGLQLHGFAIKH 390 (754)
Q Consensus 320 ~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~ 390 (754)
+... +| +..+--+...|.+.|+.+.+...|+..... .|| ..|...+-..|...+ ..+.|..++....+.
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 8765 33 344556788999999999999999999875 444 445555555555553 456666666666664
Q ss_pred CCCcchhHHHHHHHHHHhCCCHHHHHHHHhcC--------CCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHc---C
Q 004425 391 GYLSDVRLGTALVDIYAKGGDLKSARMLLDGF--------SCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLA---G 459 (754)
Q Consensus 391 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~---g 459 (754)
- +.|...|-.+..+|.....+ .+..+|... ........|.+...+.. .|++++|...|...... .
T Consensus 410 ~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~--~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 410 T-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFR--LGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred c-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH--hcChHHHHHHHHHHhhhhhhh
Confidence 4 55667777777776654333 224444322 24556678888888888 99999999999887754 1
Q ss_pred CCCCH------HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCh
Q 004425 460 MEPDP------VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDI 530 (754)
Q Consensus 460 ~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~ 530 (754)
..+|. .+-..+.......++.+.|.+.+..+.+.. +.-+..|--+.-+--..+...+|...+....+ .++
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np 564 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP 564 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc
Confidence 23333 233345556677889999999999998864 22222333333233334677888888887753 667
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHHhCC
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREG-FAPDDISILGVLQACIY------------SGLSEGGICLFNEIEQIYGL 597 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~ 597 (754)
..|+-+...|.+...+..|.+-|+...+.- ..+|..+...|.+.|.. .+..++|+++|.++.. ..
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~d 642 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--ND 642 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cC
Confidence 788888889999999999998777776432 23677777777776543 2457788888888866 44
Q ss_pred CCCccHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcc--CCCCcchHHHH
Q 004425 598 RPILEHFACMVDLLGRAGRLSEAMNLINSSP--FSESPLLWRTLVSVSKLMANSKFSILASKRLLDL--EPKDAGSFILV 673 (754)
Q Consensus 598 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l 673 (754)
+.+...-+-+.-+++..|++.+|.++|.++. ......+|-.+..+|...|++..|+++|+..+.. ..++......|
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 5567777889999999999999999998772 2235678999999999999999999999999875 34477899999
Q ss_pred HHHHHhcCCchHHHHHHHHHhhC
Q 004425 674 SNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 674 ~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+.++.+.|+|.+|.+........
T Consensus 723 ara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999998876553
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-16 Score=147.86 Aligned_cols=304 Identities=13% Similarity=0.095 Sum_probs=236.1
Q ss_pred cHHHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHc--cCChh-HHHHHhccC-----------------
Q 004425 60 DWPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAK--FNRLD-VAQKLFDGM----------------- 119 (754)
Q Consensus 60 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~~~~~-~A~~~~~~~----------------- 119 (754)
+=+.+++. ..+|.+..+--+++.|.+.|++.+..+--.|+..-+- ...+- .-.+.|-.|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 44455553 4568899999999999999988887766666554332 11111 111222222
Q ss_pred ------CCCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCc
Q 004425 120 ------LVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENN 193 (754)
Q Consensus 120 ------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 193 (754)
...+..+|.+||.++|+--..+.|.+++.+-.....+.+..+||.+|.+-.- ...+++..+|+...+.||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCc
Confidence 2335678999999999999999999999999998899999999999987543 334889999999999999
Q ss_pred HHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcc
Q 004425 194 VFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYEN 273 (754)
Q Consensus 194 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 273 (754)
..|+|+++++..+.|+++.|.+ .|++++.+|++-|+.|...+|..+|..+++.
T Consensus 273 l~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 9999999999999999988865 4678899999999999999999999999998
Q ss_pred CCchH-HHHHHHHHHHh----cCC----CChhHHHHHHHHHHhcCChHHHHHHHHccCCC-----------CchhHHHHH
Q 004425 274 LGVEE-GKQLHGLAVKF----GVV----REISVGNAIVTMYGKHGMSEEAERMFDAISER-----------NLISWTALI 333 (754)
Q Consensus 274 ~~~~~-a~~~~~~~~~~----g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li 333 (754)
++..+ +..++.++... .+. .|...|..-++.|.+..+.+.|.++-.-.... ...-|..+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 87744 45555555432 222 25667778888888889988888877655431 123466677
Q ss_pred HHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcc
Q 004425 334 SGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSD 395 (754)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 395 (754)
...|+....+.-+..|+.|.-+-+-|+..+...++.+....+.++...++|..++..|....
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 88888899999999999999888899999999999999999999999999999988775433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-16 Score=177.62 Aligned_cols=397 Identities=11% Similarity=-0.040 Sum_probs=240.5
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcC
Q 004425 264 TNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTALISGYVRSG 340 (754)
Q Consensus 264 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 340 (754)
.-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|.++|++..+ .+...+..+...+...|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 334445555666777776666665421 33444566666666667777777766666432 23445556666666666
Q ss_pred ChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHh
Q 004425 341 HGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLD 420 (754)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (754)
++++|+..+++..+. .|+...+..+...+...|+.+.|...++++.+.. +.+...+..+...+...|..+.|...++
T Consensus 98 ~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 667776666666654 2322224455555566666666666666666643 2233333445555555555555555555
Q ss_pred cCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----hcccch---HHHHHHHHHHHH
Q 004425 421 GFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLS-----ASQACL---VRGRSLHAYSIK 492 (754)
Q Consensus 421 ~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~ 492 (754)
.... ++.....+ .. .....++... ...+++ +.|.+.++.+.+
T Consensus 175 ~~~~-~p~~~~~l---------------------------~~--~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 175 DANL-TPAEKRDL---------------------------EA--DAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred hCCC-CHHHHHHH---------------------------HH--HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 4442 11100000 00 0000111111 111222 555666666654
Q ss_pred h-CCCCchh-HH----HHHHHHHHhcCCHHHHHHHHhccCCCC---hh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004425 493 T-GYAADVI-VG----NALITMYAKCGSIDGAFQIFKGISDRD---IV-SWNAMLSAYALHGLGKGALLLFEEMKREGFA 562 (754)
Q Consensus 493 ~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 562 (754)
. .-.|+.. .+ ...+.++...|++++|...|+.+.+.+ +. .-..+..+|...|++++|+..|+++.+..
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~-- 302 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP-- 302 (765)
T ss_pred hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--
Confidence 3 1122211 11 111223456688888888888876532 11 11224667888888888888888877632
Q ss_pred CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC----------CCCC---ccHHHHHHHHHhhcCCHHHHHHHH
Q 004425 563 PD-----DISILGVLQACIYSGLSEGGICLFNEIEQIYG----------LRPI---LEHFACMVDLLGRAGRLSEAMNLI 624 (754)
Q Consensus 563 p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~ 624 (754)
|. ......+..++...|++++|.++++.+..... -.|+ ...+..++..+...|++++|++.+
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 32 23455566677888888888888888866210 0122 123456778888899999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 625 NSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 625 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+++ ...| ++..+..+...+...|+.++|+..++++++++|++...+..++.++...|+|++|+.+++.+.+.
T Consensus 383 ~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 383 RELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 876 3334 68888899999999999999999999999999999999999999999999999999999888654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-16 Score=175.16 Aligned_cols=351 Identities=12% Similarity=-0.008 Sum_probs=261.6
Q ss_pred HhcCChHHHHHHHHccCC------CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHH
Q 004425 306 GKHGMSEEAERMFDAISE------RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLEL 379 (754)
Q Consensus 306 ~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 379 (754)
.+..+++.-.-.|..-++ .+..-.-.++..+.+.|++++|..+++..+.....+. .....+..++...|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHH
Confidence 344555555555555443 1223344566778888999999998888887643332 334444455667889999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHH
Q 004425 380 GLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQR 456 (754)
Q Consensus 380 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~ 456 (754)
|...++.+.+.. +.+...+..+...+...|++++|...+++.. +.+...|..+...+.. .|++++|...++.+.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~--~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVL--MDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--CCChHHHHHHHHHHH
Confidence 999998888764 3445667778888889999999999888775 4455678888888888 999999999998887
Q ss_pred HcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHH
Q 004425 457 LAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSW 533 (754)
Q Consensus 457 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 533 (754)
.. .|+.......+..+...|++++|...++.+.+..-.++......+...+.+.|++++|...|+...+ .+...+
T Consensus 172 ~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~ 249 (656)
T PRK15174 172 QE--VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR 249 (656)
T ss_pred Hh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 65 3433322222334778899999999998887764334444555567788899999999999998754 345678
Q ss_pred HHHHHHHHHcCChHH----HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHH
Q 004425 534 NAMLSAYALHGLGKG----ALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACM 607 (754)
Q Consensus 534 ~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 607 (754)
..+...|...|++++ |+..|++..+ +.|+. ..+..+...+...|++++|...+++..+ ..|+ ...+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~L 324 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 888999999999886 8999999998 56765 4788888999999999999999999876 3344 4567788
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 608 VDLLGRAGRLSEAMNLINSS-PFSESPLL-WRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
..+|.+.|++++|++.++++ ...|+... +..+..++...|+.++|...++++++.+|++.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999999876 34565433 34456778889999999999999999999854
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-17 Score=174.63 Aligned_cols=297 Identities=14% Similarity=0.085 Sum_probs=143.1
Q ss_pred HHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCC
Q 004425 234 EYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVRE---ISVGNAIVTMYGKHGM 310 (754)
Q Consensus 234 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~ 310 (754)
.+...|++++|+..|.++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34566777777777777766531 1333556666666666666666666666655332111 1334455555555555
Q ss_pred hHHHHHHHHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHH
Q 004425 311 SEEAERMFDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFA 387 (754)
Q Consensus 311 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 387 (754)
+++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 5555555555543 2334455555555555555555555555444321111000
Q ss_pred HHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 004425 388 IKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP 464 (754)
Q Consensus 388 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 464 (754)
....+..+...+.+.|++++|...|+++. +.+...+..+...+.. .|++++|.++|+++...+ |+
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~--p~- 246 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA--QGDYAAAIEALERVEEQD--PE- 246 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHC--hh-
Confidence 00112233333444444444444443332 1112233333344444 445555555554444331 21
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHHHHH
Q 004425 465 VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--RDIVSWNAMLSAYAL 542 (754)
Q Consensus 465 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 542 (754)
....+++.++.+|.+.|++++|...++.+.+ |+...+..++..+.+
T Consensus 247 --------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~ 294 (389)
T PRK11788 247 --------------------------------YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEE 294 (389)
T ss_pred --------------------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 1123344455555555555555555555432 344444555555556
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHhCCCCCcc
Q 004425 543 HGLGKGALLLFEEMKREGFAPDDISILGVLQACIY---SGLSEGGICLFNEIEQIYGLRPILE 602 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~p~~~ 602 (754)
.|++++|+.+++++.+ ..|+..++..++..+.. .|+.+++...++++.+ .++.|+..
T Consensus 295 ~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~-~~~~~~p~ 354 (389)
T PRK11788 295 QEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG-EQLKRKPR 354 (389)
T ss_pred hCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH-HHHhCCCC
Confidence 6666666666665555 34555555555554442 3355566666666555 24444444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-15 Score=170.26 Aligned_cols=405 Identities=12% Similarity=-0.002 Sum_probs=294.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004425 227 CVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYG 306 (754)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 306 (754)
...-.+......|+.++|++++.+..... ..+...+..+...+...|++++|.++++..++.. +.+......+...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455677888999999999999987622 2344468888899999999999999999988763 445667778889999
Q ss_pred hcCChHHHHHHHHccCC--C-CchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccCh-hhHHHHHHHhcccCChHHHHH
Q 004425 307 KHGMSEEAERMFDAISE--R-NLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDS-SCLATVIDGCSVCSNLELGLQ 382 (754)
Q Consensus 307 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~ 382 (754)
..|+.++|...+++..+ | +.. |..+...+...|+.++|+..++++.+. .|+. ..+..+...+...+..+.|..
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 99999999999999865 3 445 888889999999999999999999985 4544 344556667778888999988
Q ss_pred HHHHHHHhCCCcchh------HHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCH---HHHHHHHH
Q 004425 383 LHGFAIKHGYLSDVR------LGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDE---EDVMVLFS 453 (754)
Q Consensus 383 ~~~~~~~~g~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---~~A~~~~~ 453 (754)
.++.+.. .|+.. ....++..+... .... .+++ ++|++.++
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~--------------------------~~~~--~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMP--------------------------TRSE--KERYAIADRALAQYD 220 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhccc--------------------------ccCh--hHHHHHHHHHHHHHH
Confidence 8876553 23210 001111111000 0001 2233 67788888
Q ss_pred HHHHc-CCCCCHH-HHH----HHHHHHhcccchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 004425 454 QQRLA-GMEPDPV-TFS----RLLSLSASQACLVRGRSLHAYSIKTGYA-ADVIVGNALITMYAKCGSIDGAFQIFKGIS 526 (754)
Q Consensus 454 ~m~~~-g~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 526 (754)
.+.+. ...|+.. .+. ..+.++...|+.++|...++.+.+.+-+ |+- ....+...|...|++++|...|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 87753 2233321 111 1133455668889999999998877532 221 22225678899999999999999875
Q ss_pred CCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHHhcCCHHHHH
Q 004425 527 DRD-------IVSWNAMLSAYALHGLGKGALLLFEEMKREGF-----------APDD---ISILGVLQACIYSGLSEGGI 585 (754)
Q Consensus 527 ~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~---~t~~~ll~a~~~~g~~~~a~ 585 (754)
+.+ ...+..+..++...|++++|+.+++++.+... .|+. ..+..+...+...|++++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 422 23455667788899999999999999987421 1332 24456677888999999999
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 586 CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
+.++++.. ..+.+...+..++.++...|++++|++.+++. ...| +...+..++......|++++|+.+++++++..
T Consensus 380 ~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 380 MRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999977 34455678889999999999999999999876 4556 47788888888889999999999999999999
Q ss_pred CCCcchH
Q 004425 664 PKDAGSF 670 (754)
Q Consensus 664 p~~~~~~ 670 (754)
|+++.+.
T Consensus 458 Pd~~~~~ 464 (765)
T PRK10049 458 PQDPGVQ 464 (765)
T ss_pred CCCHHHH
Confidence 9988543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-16 Score=169.72 Aligned_cols=426 Identities=12% Similarity=-0.008 Sum_probs=272.5
Q ss_pred HHHHHHHHhHhcCCHhHHHHHhccCC--CCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHhc
Q 004425 196 VGTSLISMYFHSGCFREAENVFRGLA--YKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPN-DYTFTNVISVCYE 272 (754)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 272 (754)
.+..+-..|.+.|++++|++.|++.. .|+...|..+..+|.+.|++++|++.+++..+. .|+ ...+..+-.++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 45566778899999999999998865 356778888999999999999999999998875 343 4578888899999
Q ss_pred cCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHh
Q 004425 273 NLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEF 352 (754)
Q Consensus 273 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 352 (754)
.|++++|..-+......+-..+... ..++.-+........+...++.-+ .+..++..+.. |...........-+.+-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 9999999988876655432222222 222222222222334444443322 23334443322 22222222222111111
Q ss_pred HhcCcccCh-hhHHHHHHH---hcccCChHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCCh
Q 004425 353 LDLGICCDS-SCLATVIDG---CSVCSNLELGLQLHGFAIKHG-YLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYT 427 (754)
Q Consensus 353 ~~~g~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 427 (754)
.+ ..++. ..+..+... ....+++++|.+.|+..++.+ ..| ...
T Consensus 284 ~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~------------------------------~~a 331 (615)
T TIGR00990 284 NE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGE------------------------------KEA 331 (615)
T ss_pred cc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCCh------------------------------hhH
Confidence 11 11110 000000000 012234444544444444432 111 122
Q ss_pred hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 004425 428 AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP-VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALI 506 (754)
Q Consensus 428 ~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 506 (754)
..|+.+...+.. .|++++|+..|++..+. .|+. ..|..+...+...|++++|...++.+.+.. +.+..++..+.
T Consensus 332 ~a~~~lg~~~~~--~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg 406 (615)
T TIGR00990 332 IALNLRGTFKCL--KGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRA 406 (615)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 234444455555 67777777777776654 4543 466666667777777777777777777653 34567778888
Q ss_pred HHHHhcCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 004425 507 TMYAKCGSIDGAFQIFKGISD--R-DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSE 582 (754)
Q Consensus 507 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 582 (754)
..|...|++++|...|++..+ | +...|..+...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|+++
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHH
Confidence 888888888888888887754 3 456677788888899999999999999887 4565 457888888889999999
Q ss_pred HHHHHHHHHHHHhCCCCCc-c-------HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 004425 583 GGICLFNEIEQIYGLRPIL-E-------HFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFS 652 (754)
Q Consensus 583 ~a~~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 652 (754)
+|+..|++... +.|+. . .++.....+...|++++|.+++++. ...| +...+..+...+...|++++|
T Consensus 485 ~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 485 EAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 99999998865 23321 1 1112222334468999999999864 4455 456788899999999999999
Q ss_pred HHHHHHhhccCCCCcc
Q 004425 653 ILASKRLLDLEPKDAG 668 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~ 668 (754)
...+++++++.+....
T Consensus 562 i~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 562 LKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHhccHHH
Confidence 9999999999876443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-16 Score=171.44 Aligned_cols=351 Identities=12% Similarity=-0.012 Sum_probs=276.3
Q ss_pred HHhcCChhHHHHHHHHhHhcC--cccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHH
Q 004425 336 YVRSGHGGKAINGFLEFLDLG--ICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLK 413 (754)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 413 (754)
+.+..+|+.-.-.|..-.++- -.-+......++..+.+.|+.+.|..+++..+...... ......++......|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHH
Confidence 345556655555554432221 11233445667788899999999999999999876444 344444556667799999
Q ss_pred HHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchHHHHHHHHH
Q 004425 414 SARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPD-PVTFSRLLSLSASQACLVRGRSLHAY 489 (754)
Q Consensus 414 ~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 489 (754)
+|...|+++. +.+...|..+...+.. .|++++|+..|++..+. .|+ ...+..+...+...|+.++|...+..
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~--~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLK--SKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 9999999886 4455678888888999 99999999999999875 455 46778888899999999999999998
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 004425 490 SIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR----DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD 565 (754)
Q Consensus 490 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 565 (754)
+....- .+...+..+ ..+...|++++|...++.+.+. +...+..+..++...|++++|+..++++.+. .|+.
T Consensus 170 ~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~ 245 (656)
T PRK15174 170 QAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDG 245 (656)
T ss_pred HHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 877642 233333333 3478899999999999987543 2334455677889999999999999999984 4654
Q ss_pred -HHHHHHHHHHHhcCCHHH----HHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 004425 566 -ISILGVLQACIYSGLSEG----GICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWR 637 (754)
Q Consensus 566 -~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 637 (754)
..+..+...+...|++++ |...|+++.+ +.|+ ...+..++.+|.+.|++++|+..+++. ...| ++..+.
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 577788889999999986 8999999866 3444 568889999999999999999999876 3445 577888
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 638 TLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 638 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
.+..++...|++++|...++++++.+|+++..+..++.++...|++++|...+++..+...
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 8999999999999999999999999999887777789999999999999999998866543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-14 Score=159.19 Aligned_cols=432 Identities=9% Similarity=0.003 Sum_probs=222.5
Q ss_pred hHhcCCHhHHHHHhccCCCCCcc---hHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHH-H--HHHHhccCCch
Q 004425 204 YFHSGCFREAENVFRGLAYKDVR---CVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTN-V--ISVCYENLGVE 277 (754)
Q Consensus 204 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-l--l~~~~~~~~~~ 277 (754)
..+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+.. + ...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 45667777777777666543222 12266666666677777777776665 232222222 2 33455556667
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCC--CchhHHHHHHHHHhcCChhHHHHHHHHhHhc
Q 004425 278 EGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISER--NLISWTALISGYVRSGHGGKAINGFLEFLDL 355 (754)
Q Consensus 278 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (754)
+|.++++.+.+.. +.+..++..++..|...++.++|++.++++... +...+-.++..+...++..+|++.++++.+.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 7777776666653 223445555566666666666666666666542 2222222222222233443466666666554
Q ss_pred CcccC-hhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHH
Q 004425 356 GICCD-SSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAIL 434 (754)
Q Consensus 356 g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 434 (754)
.|+ ...+..+..+..+.|-...|.++..+ .|+..+-...... +.+.|.+..+.-..+
T Consensus 199 --~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~--------- 256 (822)
T PRK14574 199 --APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLP--------- 256 (822)
T ss_pred --CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcccc---------
Confidence 232 33334444444444444444433332 1111110000000 000011110000000
Q ss_pred HHHhhhhcC---CHHHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHH
Q 004425 435 SGFMEKIAD---DEEDVMVLFSQQRLA-GMEPDP-V----TFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNAL 505 (754)
Q Consensus 435 ~~~~~~~~~---~~~~A~~~~~~m~~~-g~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 505 (754)
...... -.+.|+.-++.+... +-.|.. . ...-.+-++...++..++...++.+...+.+.-..+-.++
T Consensus 257 ---~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 257 ---TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ---cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 000011 234455555555441 112322 1 1223344566677777777777777776665555566677
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-------------CC
Q 004425 506 ITMYAKCGSIDGAFQIFKGISDR---------DIVSWNAMLSAYALHGLGKGALLLFEEMKREGF-------------AP 563 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p 563 (754)
.++|...+++++|..+|+.+... +......|.-+|...+++++|..+++++.+.-. .|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 77777777777777777766321 122235566677777777777777777765211 12
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 004425 564 DDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLV 640 (754)
Q Consensus 564 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 640 (754)
|-. .+..+...+...|++.+|++.++.+.. .-+-+......+.+++...|+..+|++.++.. ...| +..+....+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 222 233344556666677777777766654 33445556666666666666666666666543 2344 344555556
Q ss_pred HHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 641 SVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 641 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
.+....+++++|..+.+++.+..|+++
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 666666666666666666666666665
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-14 Score=137.14 Aligned_cols=329 Identities=14% Similarity=0.063 Sum_probs=235.4
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhc--cCCChHH-HHHHHHHHHHHCCCCcHHHHHH
Q 004425 123 SAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACS--LLEDRIF-GEQIHAFAIKSGFENNVFVGTS 199 (754)
Q Consensus 123 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~-a~~~~~~m~~~g~~~~~~~~~~ 199 (754)
.+++-|.|+. ...+|...++.-+|+.|...|+..++..-..|++..+ ...++.- -++.|-.|.+.|-. +..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 4556666665 4567889999999999999999888877777766544 2223222 23344445444422 22222
Q ss_pred HHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHH
Q 004425 200 LISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEG 279 (754)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 279 (754)
+.|++.+ ++-+...+...+|..||.|+|+--..+.|.++|++-.....+.+..+||.+|.+-.- ...
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 3454443 444444556678999999999999999999999999988889999999999987543 334
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCccc
Q 004425 280 KQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICC 359 (754)
Q Consensus 280 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 359 (754)
++++.+|......||..|+|+++....+.|+++.|.+. |++++.+|++.|+.|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVeP 310 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCc
Confidence 88999999999999999999999999999998877643 566778888888888
Q ss_pred ChhhHHHHHHHhcccCChHH-HHHHHHHHHH----hCCCc----chhHHHHHHHHHHhCCCHHHHHHHHhcCCCC-----
Q 004425 360 DSSCLATVIDGCSVCSNLEL-GLQLHGFAIK----HGYLS----DVRLGTALVDIYAKGGDLKSARMLLDGFSCK----- 425 (754)
Q Consensus 360 ~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 425 (754)
...+|..+|..+++.++..+ +..++.++.. ..++| |...+..-+..+.+..+.+-|.++-.-+...
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 88888888888877776643 3333333332 22222 4455666677777777777777765544311
Q ss_pred ------ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCC
Q 004425 426 ------YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAA 497 (754)
Q Consensus 426 ------~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 497 (754)
...-|..+....|+ ....+..+..|+.|.-.-+-|+..+...++++....+.++-..+++..++..|...
T Consensus 391 ig~~~~~~fYyr~~~~licq--~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~ 466 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQ--MESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF 466 (625)
T ss_pred cChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh
Confidence 11235556667777 77788888888888877778888888888888888888888888888888776433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-14 Score=150.31 Aligned_cols=547 Identities=13% Similarity=0.014 Sum_probs=301.9
Q ss_pred hhccccccccCCCCCcHHHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCCCCh
Q 004425 45 SISSVSCSERTLLFNDWPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSA 124 (754)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 124 (754)
+...+...|+.|+..||..++-.|+..|+++.|. +|..|.-...+.+-.+++.++..-...++.+.+. .|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 3344566778889999999999999999999888 8888887777777788888888888888876665 6778
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHH-H-------HhCCCCCChhhHHHHHHHhccCC-C------hHHHHHHHHHHHHHC
Q 004425 125 ITWTSLIKGYLDDGDYESVLGIACD-M-------YRSEEKFNEHTCSVILEACSLLE-D------RIFGEQIHAFAIKSG 189 (754)
Q Consensus 125 ~~~~~li~~~~~~~~~~~a~~~~~~-m-------~~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~m~~~g 189 (754)
.+|+.|..+|.++|+... ++..++ | ...|+-.-+.-|-..+.+|...- + ..--+.+++...+.+
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998765 222222 2 12333222222222222222110 0 001122233333333
Q ss_pred C-CCcHHHHHH---HHHHhH-hcCCHhHHHHHhccCCC-CCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchH
Q 004425 190 F-ENNVFVGTS---LISMYF-HSGCFREAENVFRGLAY-KDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTF 263 (754)
Q Consensus 190 ~-~~~~~~~~~---li~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 263 (754)
. .|...-++. .++-.. ....+++-........+ ++..+|.+++..-..+|+.+.|..++.+|++.|+..+..-|
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 1 111110000 111111 12234444444444444 78889999999999999999999999999999999999888
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChh
Q 004425 264 TNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGG 343 (754)
Q Consensus 264 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 343 (754)
-.|+-+ .++...++.++.-|...|+.|+..|+..-+-.+.++|....+.+..+.-.--....+..+.++...+.+.+
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~ 319 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLR 319 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHH
Confidence 888866 78888899999999999999999999887777777555322222111100011122222332211111111
Q ss_pred -----HHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCC---CcchhHHHHHHHHHHhCCCHHHH
Q 004425 344 -----KAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGY---LSDVRLGTALVDIYAKGGDLKSA 415 (754)
Q Consensus 344 -----~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A 415 (754)
-....+.+..-.|+.-....|.. +.-....|.-+...++...+..--. ..++..+..++.-|.+
T Consensus 320 ~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr------- 391 (1088)
T KOG4318|consen 320 QNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR------- 391 (1088)
T ss_pred HHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH-------
Confidence 11122222222233222222222 2222234555555555555543111 1122333333333332
Q ss_pred HHHHhcCCCCChhhHHHHHHHHhhh-hcCCHHHHHHHHHHH------------HH----cCCC-------CCHHHHHHHH
Q 004425 416 RMLLDGFSCKYTAEFNAILSGFMEK-IADDEEDVMVLFSQQ------------RL----AGME-------PDPVTFSRLL 471 (754)
Q Consensus 416 ~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~~~A~~~~~~m------------~~----~g~~-------p~~~~~~~ll 471 (754)
+...+..........+.... ...+..+..++.... .. +-.. +-...-+.++
T Consensus 392 -----r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~ 466 (1088)
T KOG4318|consen 392 -----RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH 466 (1088)
T ss_pred -----HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence 22211111000000000000 011111111111111 00 0001 1112334555
Q ss_pred HHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCh------hHHHHHHHHHHHcCC
Q 004425 472 SLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDI------VSWNAMLSAYALHGL 545 (754)
Q Consensus 472 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~ 545 (754)
..|++.-+..+++..-+.....-++ ..|..||+.+....+.++|..+.++...+|. .-+..+.+.+.+.+.
T Consensus 467 l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 467 LTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 5666665555555444433332221 5688888888888899999999888876654 356778888888888
Q ss_pred hHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHH
Q 004425 546 GKGALLLFEEMKREGF-APD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 546 ~~~A~~~~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
...+..+++++.+.-. .|+ ..++..++......|..+.-.+.++-+.. +|+.-+ .-++....+.++...|.+.
T Consensus 544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs-lgl~et----gPl~~vhLrkdd~s~a~ea 618 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS-LGLSET----GPLWMVHLRKDDQSAAQEA 618 (1088)
T ss_pred HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH-hhhhhc----ccceEEEeeccchhhhhhc
Confidence 8889888888886332 232 34677777777788888777777777766 565442 2333444455555555554
Q ss_pred H
Q 004425 624 I 624 (754)
Q Consensus 624 ~ 624 (754)
.
T Consensus 619 ~ 619 (1088)
T KOG4318|consen 619 P 619 (1088)
T ss_pred c
Confidence 4
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-11 Score=120.66 Aligned_cols=459 Identities=13% Similarity=0.054 Sum_probs=303.8
Q ss_pred HHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHH----HHhcCCCChhHHHHHHHHHHhcCCh
Q 004425 236 NKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLA----VKFGVVREISVGNAIVTMYGKHGMS 311 (754)
Q Consensus 236 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~ 311 (754)
.+..-++.|..+++..++. ++-+...|.+....=-..|+.+...++++.- ...|+..+..-|-.=...+-+.|..
T Consensus 417 arLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 417 ARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 3333444444444444432 3334444444444334444444444444332 2234444444444444444444444
Q ss_pred HHHHHHHHccCC------CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHH
Q 004425 312 EEAERMFDAISE------RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHG 385 (754)
Q Consensus 312 ~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 385 (754)
--+..+...... .--.+|+.-...|.+.+.++-|..+|...++- ..-+...|......--..|..+....++.
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 444433333321 11234555555555555555555555554442 12223334333333344455555555555
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 004425 386 FAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEP 462 (754)
Q Consensus 386 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p 462 (754)
+++..- +-....+-.....+-..|++..|+.++.+.- ..+...|-+-+.--.. +.+++.|..+|.+.... .|
T Consensus 575 kav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~e--n~e~eraR~llakar~~--sg 649 (913)
T KOG0495|consen 575 KAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE--NDELERARDLLAKARSI--SG 649 (913)
T ss_pred HHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc--cccHHHHHHHHHHHhcc--CC
Confidence 555542 2233344445555556677777766666553 2344456666666666 78888888888877754 67
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-hhHHHHHHHH
Q 004425 463 DPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--RD-IVSWNAMLSA 539 (754)
Q Consensus 463 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~ 539 (754)
+...|.--+..---.++.++|++++++.++. ++.-...|-.+.+.+-..++++.|...|..-.+ |+ +..|-.|...
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 7777766666667788889999999888875 344566788888899999999999999987754 44 4578888887
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 618 (754)
--+.|+..+|..++++..-.+ | |...|...+..-.+.|..+.|..+..+..+ ..+.+...|.--|.+..+.++-.
T Consensus 729 eEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccch
Confidence 788899999999999988754 4 556888999999999999999999999887 56677778888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 619 EAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 619 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
.+.+.+++- +.|+.+..+....+....+++.|..-|++++..+|++..+|..+-..+.+.|.-++-.+++.+......
T Consensus 805 ks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 805 KSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 888888775 457788888888899999999999999999999999999999999999999999999999987755433
Q ss_pred ccCCceeEEEEC
Q 004425 699 SKEAGCSWIEID 710 (754)
Q Consensus 699 ~~~~~~s~~~~~ 710 (754)
..|..|+.+.
T Consensus 883 --~hG~~W~avS 892 (913)
T KOG0495|consen 883 --THGELWQAVS 892 (913)
T ss_pred --CCCcHHHHHh
Confidence 2566666544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-11 Score=129.02 Aligned_cols=613 Identities=14% Similarity=0.115 Sum_probs=401.8
Q ss_pred hccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccC---CCCChhhHHHHHHHHhcCCChhHHH
Q 004425 68 SIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGM---LVRSAITWTSLIKGYLDDGDYESVL 144 (754)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~ 144 (754)
+++ |++..|..++.++++.. +.....|-.|-..|-..|+.+++...+--. ...|..-|-.+-.-..+.|++.+|.
T Consensus 150 far-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 444 99999999999999876 456678999999999999999998876444 3447788999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHH----HHHHHhHhcCCHhHHHHHhccC
Q 004425 145 GIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGT----SLISMYFHSGCFREAENVFRGL 220 (754)
Q Consensus 145 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~ 220 (754)
-+|.+..+.. +++...+---...|-+.|+...|..-+.++....-+.|..-.. ..++.|...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999998764 2343444444566778899999999999988875433333222 3456667777778888888776
Q ss_pred CC--C---CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC----------------------cchHH----HHHHH
Q 004425 221 AY--K---DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPN----------------------DYTFT----NVISV 269 (754)
Q Consensus 221 ~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------------~~t~~----~ll~~ 269 (754)
.. . +...+|.++..|.+...++.|......+......+| ...|. .+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 54 2 445789999999999999999999888876222222 22221 22333
Q ss_pred HhccCCchHHHHHHHHHHHhc--CCCChhHHHHHHHHHHhcCChHHHHHHHHccCC----CCchhHHHHHHHHHhcCChh
Q 004425 270 CYENLGVEEGKQLHGLAVKFG--VVREISVGNAIVTMYGKHGMSEEAERMFDAISE----RNLISWTALISGYVRSGHGG 343 (754)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~ 343 (754)
+.+....+....+...+.+.. ...+...|.-+.++|...|++.+|.++|..+.. .+...|-.+..+|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 445556666666666677666 444677888999999999999999999998875 46678999999999999999
Q ss_pred HHHHHHHHhHhcCcccChh-hHHHHHHHhcccCChHHHHHHHHHHH--------HhCCCcchhHHHHHHHHHHhCCCHHH
Q 004425 344 KAINGFLEFLDLGICCDSS-CLATVIDGCSVCSNLELGLQLHGFAI--------KHGYLSDVRLGTALVDIYAKGGDLKS 414 (754)
Q Consensus 344 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~ 414 (754)
+|++.|...+.. .|+.. .-..|-..+-+.|+.++|.+.++.+. ..+..|+..+.--..+.|.+.|+.++
T Consensus 467 ~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 467 EAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999999998874 45443 33445555778899999999988843 34456667777777788888888777
Q ss_pred HHHHHhcCCCC--------------------------ChhhHHHHHHHHhhhhcCCHHHHH------HHHHHHHHcCCCC
Q 004425 415 ARMLLDGFSCK--------------------------YTAEFNAILSGFMEKIADDEEDVM------VLFSQQRLAGMEP 462 (754)
Q Consensus 415 A~~~~~~~~~~--------------------------~~~~~~~li~~~~~~~~~~~~~A~------~~~~~m~~~g~~p 462 (754)
=..+-..|..+ +......++.+-.+ .++..... ..+..-...|+.-
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k--~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREK--ATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhc--cCchHHhhhcccchhhhhhhhhccCcH
Confidence 44433322210 01111112222222 11111100 1111111223332
Q ss_pred CH--HHHHHHHHHHhcccchHHHHHHHHHHHHhCC--CCch---hHHHHHHHHHHhcCCHHHHHHHHhccCCC-----Ch
Q 004425 463 DP--VTFSRLLSLSASQACLVRGRSLHAYSIKTGY--AADV---IVGNALITMYAKCGSIDGAFQIFKGISDR-----DI 530 (754)
Q Consensus 463 ~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~ 530 (754)
+. ..+.-++..+++.+++++|..+...+..... .++. ..-...+.+....+++..|...++.|... ++
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 32 2345566677888888888888888776532 1222 22344556667778888888888777543 33
Q ss_pred ---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHH
Q 004425 531 ---VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVL--QACIYSGLSEGGICLFNEIEQIYGLRPILEHFA 605 (754)
Q Consensus 531 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 605 (754)
..||...+.+.+.++-.--.+++..... .+|+......++ .-....+.+..|+..+-+... ..|+....+
T Consensus 703 ~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~Pl~n 777 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSPLIN 777 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCcHHH
Confidence 3677666666666654444444444433 233332222222 233456778888887776644 456643333
Q ss_pred -HHHHHHh----------hcCCHHHHHHHHHhC---CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc---
Q 004425 606 -CMVDLLG----------RAGRLSEAMNLINSS---PF-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA--- 667 (754)
Q Consensus 606 -~l~~~~~----------~~g~~~~A~~~~~~~---~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~--- 667 (754)
||+-++. |.-..-.+..++.+. .. .....++-.++.+|...|=...|+..|++++++.|.+-
T Consensus 778 l~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~ 857 (895)
T KOG2076|consen 778 LCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDP 857 (895)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccc
Confidence 3332221 111234455555332 11 12466777899999999999999999999999875421
Q ss_pred ---------chHHHHHHHHHhcCCchHHHHHHHH
Q 004425 668 ---------GSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 668 ---------~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
.+-.+|.-+|-.+|+...|..+.++
T Consensus 858 ~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 858 KEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 2455677789999999999988764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-12 Score=145.17 Aligned_cols=432 Identities=12% Similarity=0.029 Sum_probs=246.2
Q ss_pred HHHccCChhHHHHHhccCCCCChh---hHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhh---HHHHHHHhccCCCh
Q 004425 102 LYAKFNRLDVAQKLFDGMLVRSAI---TWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHT---CSVILEACSLLEDR 175 (754)
Q Consensus 102 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~ 175 (754)
...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+... ...+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 355788888999988887543222 22377788888899999998888886 332222 22234466677888
Q ss_pred HHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHH--cCChhHHHHHHHHhHH
Q 004425 176 IFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNK--AGESEMAFHVFVHLLS 253 (754)
Q Consensus 176 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 253 (754)
+.|.++++.+.+.. +.+..++..++..|...++.++|++.++++...+......+..++.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888888888775 33456666777888888888888888887775544322223334443 4555558888888877
Q ss_pred CCCCC-CcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHH
Q 004425 254 SDFEP-NDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTAL 332 (754)
Q Consensus 254 ~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 332 (754)
.. | +...+..++.++.+.|-...|.++..+ .|+.++-...... +.+.|.+..+....++.
T Consensus 198 ~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~------ 258 (822)
T PRK14574 198 LA--PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR------ 258 (822)
T ss_pred hC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcccccc------
Confidence 63 4 344556666777777777766665544 2222211111110 01111111111100000
Q ss_pred HHHHHhcCC---hhHHHHHHHHhHhc-CcccChh-----hHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHH
Q 004425 333 ISGYVRSGH---GGKAINGFLEFLDL-GICCDSS-----CLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALV 403 (754)
Q Consensus 333 i~~~~~~g~---~~~A~~~~~~m~~~-g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 403 (754)
...++ .+.|+.-++.+... +-.|... ...-.+-++...++...+.+.++.+...|.+....+-.++.
T Consensus 259 ----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 259 ----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 00011 23344444444431 1112211 11223445666677777777777777766655556677777
Q ss_pred HHHHhCCCHHHHHHHHhcCCCC---------ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC-----------CCC
Q 004425 404 DIYAKGGDLKSARMLLDGFSCK---------YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGM-----------EPD 463 (754)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~ 463 (754)
++|...++.++|..+++++... +......|.-+|.. .+++++|..+++.+.+.-. .||
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld--~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE--SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh--cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 7777777777777777765321 11223456666677 7777777777777766310 122
Q ss_pred H--H-HHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhHHHHHH
Q 004425 464 P--V-TFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--R-DIVSWNAML 537 (754)
Q Consensus 464 ~--~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 537 (754)
. . .+..+...+...|++.+|++.++.+.... +-|..+...+.+.+...|.+.+|++.++.... | +..+....+
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 1 1 22334445556666666666666665443 44666666666666666666666666655432 2 333444555
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 004425 538 SAYALHGLGKGALLLFEEMKREGFAPDDI 566 (754)
Q Consensus 538 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 566 (754)
.++...|++.+|..+.+.+.+ ..|+..
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~--~~Pe~~ 518 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVIS--RSPEDI 518 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--hCCCch
Confidence 556666666666666666665 445544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-13 Score=138.65 Aligned_cols=523 Identities=12% Similarity=-0.039 Sum_probs=296.0
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCC
Q 004425 145 GIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKD 224 (754)
Q Consensus 145 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 224 (754)
.++-.|...|+.|+..||..++.-||..|+++.|- +|..|.-...+.+..+++.++.+....++.+.+. ++.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34556666777777777777777777777777777 7777776666667777777777777776666554 556
Q ss_pred cchHHHHHHHHHHcCChhH---HHHHHHHhH----HCCC-----------------CCCcchHHHHHHHHhccCCchHHH
Q 004425 225 VRCVNFMILEYNKAGESEM---AFHVFVHLL----SSDF-----------------EPNDYTFTNVISVCYENLGVEEGK 280 (754)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~---A~~~~~~m~----~~g~-----------------~p~~~t~~~ll~~~~~~~~~~~a~ 280 (754)
..+|+.+..+|.+.|+... ..+.+.... ..|+ -||..+ ++.-....|-++.+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqll 159 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLL 159 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHH
Confidence 6677777777777777544 222111111 1222 222221 111122223333333
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHh-cCChHHHHHHHHccCC-CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcc
Q 004425 281 QLHGLAVKFGVVREISVGNAIVTMYGK-HGMSEEAERMFDAISE-RNLISWTALISGYVRSGHGGKAINGFLEFLDLGIC 358 (754)
Q Consensus 281 ~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 358 (754)
+++..+...... .++.. +++-... ...+++-........+ ++..+|.+.+..-..+|+.+.|..++.+|.+.|..
T Consensus 160 kll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 333222111000 01111 1222222 2334455555555554 89999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 004425 359 CDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFM 438 (754)
Q Consensus 359 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 438 (754)
.+.+.|..++-+ .++...+..+.+-|.+.|+.|+..|+...+..+...|....+....+.-..-....+..+..+..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 999999999877 88899999999999999999999999988888777665333322211100011112222222211
Q ss_pred hhhcCCHH-----HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 004425 439 EKIADDEE-----DVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCG 513 (754)
Q Consensus 439 ~~~~~~~~-----~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 513 (754)
. +...+ -....+.+..-.|+......|..... ...+|.-+...++...+..--. ..-+.-+++|.
T Consensus 314 a--~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~----r~s~~~V~a~~--- 383 (1088)
T KOG4318|consen 314 A--NKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTL----RDSGQNVDAFG--- 383 (1088)
T ss_pred h--HHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCcc----ccCcchHHHHH---
Confidence 1 11111 12222333333344444444433332 2236666666666666643211 11111122221
Q ss_pred CHHHHHHHHhccCCCChhHHHHHHHHHHH---cC------------ChHHHHHHHHHHHH----cCCCC-------CHHH
Q 004425 514 SIDGAFQIFKGISDRDIVSWNAMLSAYAL---HG------------LGKGALLLFEEMKR----EGFAP-------DDIS 567 (754)
Q Consensus 514 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g------------~~~~A~~~~~~m~~----~g~~p-------~~~t 567 (754)
+.+.+.|.+...+......-.-.+... .. +...++.-+..... .-..| -...
T Consensus 384 --~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 384 --ALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred --HHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 123344444433222111001111111 11 11111111111110 00111 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCC-----CCCHHHHHHHHHH
Q 004425 568 ILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPF-----SESPLLWRTLVSV 642 (754)
Q Consensus 568 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~p~~~~~~~l~~~ 642 (754)
-+.++..|++.-+..++...-+.... +-+. ..|..|++.+....+.++|..+.++... .-|...+..+.+.
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~-~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYED-LLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 34455566666666666654444433 2232 5689999999999999999999988732 2355567788888
Q ss_pred HHhcCChHHHHHHHHHhhcc---CCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCcc
Q 004425 643 SKLMANSKFSILASKRLLDL---EPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSK 700 (754)
Q Consensus 643 ~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 700 (754)
..+++....+..++++..+. .|........+-+-.+..|+.+...+..+-+...|+..
T Consensus 538 L~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 89999999999998877663 34445566667777888899999999999888888765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-11 Score=129.33 Aligned_cols=546 Identities=12% Similarity=0.020 Sum_probs=333.5
Q ss_pred cCChhHHHHHhccCCCC---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHH
Q 004425 106 FNRLDVAQKLFDGMLVR---SAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIH 182 (754)
Q Consensus 106 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 182 (754)
.|++++|.+++.++.+. +...|.+|-..|-..|+.+.++..+-..-... +-|...|..+-......|.++.|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 49999999999998543 67899999999999999999988765553332 235577888888888999999999999
Q ss_pred HHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCc----c----hHHHHHHHHHHcCChhHHHHHHHHhHHC
Q 004425 183 AFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDV----R----CVNFMILEYNKAGESEMAFHVFVHLLSS 254 (754)
Q Consensus 183 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 254 (754)
...++.. +++....---...|-+.|+...|.+-|.++.+.+. . .--.++..+...++-+.|++.+......
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999886 44444444456788899999999888877664322 1 2223456677777778888888877663
Q ss_pred C-CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcC---------------------------CCChhH-HHHHHHHH
Q 004425 255 D-FEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGV---------------------------VREISV-GNAIVTMY 305 (754)
Q Consensus 255 g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---------------------------~~~~~~-~~~li~~~ 305 (754)
+ -..+..++++++..+.+...++.+......+..... .++..+ ...+--..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 2 334556778888888888888888877777665222 222222 11111112
Q ss_pred HhcCChHHHHHHHHccCC----CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHH
Q 004425 306 GKHGMSEEAERMFDAISE----RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGL 381 (754)
Q Consensus 306 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 381 (754)
.+.+...+++.-|-.... .++..|.-+..+|...|++.+|+.+|..+.....--+...|-.+...+...|..+.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 223333343333322211 2445666677777777777777777777776554455566666667777777777777
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC
Q 004425 382 QLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGME 461 (754)
Q Consensus 382 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~ 461 (754)
+.++.++... +.+...-..|...|.+.|+.++|.+.+..+..+|... ....+..
T Consensus 470 e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~-------------------------~e~~a~~ 523 (895)
T KOG2076|consen 470 EFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN-------------------------AEACAWE 523 (895)
T ss_pred HHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc-------------------------hhhcccc
Confidence 7777776643 3344455566666777777777777777765444210 0001112
Q ss_pred CCHHHHHHHHHHHhcccchHHHHHHHHHHHH----------------------hCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004425 462 PDPVTFSRLLSLSASQACLVRGRSLHAYSIK----------------------TGYAADVIVGNALITMYAKCGSIDGAF 519 (754)
Q Consensus 462 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----------------------~~~~~~~~~~~~li~~~~~~g~~~~A~ 519 (754)
|+..........+.+.|+.++-..+...++. .+..........++.+-.+.++.....
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhh
Confidence 2222222222223333333322222211111 011122223333344444444332222
Q ss_pred HHHhcc--------CCCChh----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHH--H-HHHHHHHHHhcCCHH
Q 004425 520 QIFKGI--------SDRDIV----SWNAMLSAYALHGLGKGALLLFEEMKREGFA--PDDI--S-ILGVLQACIYSGLSE 582 (754)
Q Consensus 520 ~~~~~~--------~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~--t-~~~ll~a~~~~g~~~ 582 (754)
.-...- ..-.+. .+.-++.++++.+++++|+.+...+...... ++.. . =...+.++...+++.
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~ 683 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPG 683 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHH
Confidence 211111 111222 2345778899999999999999988864332 2221 2 244566778899999
Q ss_pred HHHHHHHHHHHHhCCCCCc---cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChHHHHHHH
Q 004425 583 GGICLFNEIEQIYGLRPIL---EHFACMVDLLGRAGRLSEAMNLINSS-PFSES--PLLWRTLVSVSKLMANSKFSILAS 656 (754)
Q Consensus 583 ~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 656 (754)
.|..+++.|...+++..++ ..|++......+.|+-.--..++... ...|+ +.............+.+.-|.+.+
T Consensus 684 ~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y 763 (895)
T KOG2076|consen 684 DAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEY 763 (895)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHH
Confidence 9999999998865555443 35665666666666655555555443 22232 222222233445678899999999
Q ss_pred HHhhccCCCCcchHHHHHHHHHh
Q 004425 657 KRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 657 ~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
-+++..+|++|..-..+|-++..
T Consensus 764 ~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 764 MRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHH
Confidence 99999999999877777766543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-12 Score=120.50 Aligned_cols=202 Identities=11% Similarity=0.099 Sum_probs=162.6
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhHHHHHHHHHHHcCChHHHHHH
Q 004425 476 SQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS---DRDIVSWNAMLSAYALHGLGKGALLL 552 (754)
Q Consensus 476 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 552 (754)
..|+++.|.+.+.+++...-......|| +.-.+.+.|++++|++.|-.+. ..++...-.+.+.|-...+...|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4577888888888887654333333333 2335678899999999987663 35666666777888888999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 004425 553 FEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFS 630 (754)
Q Consensus 553 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 630 (754)
+-+... +-| |...+.-|...|-+.|+-.+|.+++..--. -++.+.++..-|...|....-+++|+.+|++. -..
T Consensus 581 ~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 581 LMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 988776 555 556888899999999999999998765533 46667888888899999999999999999976 568
Q ss_pred CCHHHHHHHHHHH-HhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCC
Q 004425 631 ESPLLWRTLVSVS-KLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 631 p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
|+..-|-.++..| ++.|++.+|..+|+......|+|...+..|..+....|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999988877 456999999999999999999999999999999888875
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-09 Score=109.64 Aligned_cols=415 Identities=11% Similarity=0.039 Sum_probs=323.7
Q ss_pred HHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcCChhH
Q 004425 268 SVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTALISGYVRSGHGGK 344 (754)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 344 (754)
++.....+.+.|.-++...++. ++.+...+ -+|.+..-++.|.++++...+ .+...|-+-...--.+|+.+.
T Consensus 384 KaAVelE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 3344455566677777777765 23333333 456666778889988887765 466777776666677888888
Q ss_pred HHHHHHH----hHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcc--hhHHHHHHHHHHhCCCHHHHHHH
Q 004425 345 AINGFLE----FLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSD--VRLGTALVDIYAKGGDLKSARML 418 (754)
Q Consensus 345 A~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~ 418 (754)
..++..+ +...|+..+...|..=..+|-..|..-.+..+....+..|++.. ..++..-.+.|.+.+.++-|+.+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 8777665 45678999999998888999999999999999999999887543 46788888889999999999999
Q ss_pred HhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCC
Q 004425 419 LDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGY 495 (754)
Q Consensus 419 ~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 495 (754)
|.... ..+...|......--. .|..++-..+|++.... ++-....|....+-.-..|++..|+.++..+.+.+
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~--hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~- 614 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKS--HGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN- 614 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHh--cCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-
Confidence 98665 4455667666555555 89999999999999886 23333556666667778899999999999999876
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 004425 496 AADVIVGNALITMYAKCGSIDGAFQIFKGISD--RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVL 572 (754)
Q Consensus 496 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll 572 (754)
+.+..+|-+-+..-....+++.|..+|.+... +....|.--+....-.+..++|++++++.++ .-|+.. .|..+.
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLG 692 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHh
Confidence 44788899999999999999999999998864 6677777767777778999999999999998 678875 677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChH
Q 004425 573 QACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVSVSKLMANSK 650 (754)
Q Consensus 573 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~ 650 (754)
+.+.+.++++.|...|..=.+ ..+-.+-.|-.+.++=.+.|.+-+|..++++. ..+.+...|...+..-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 889999999999998876543 23334567888888889999999999999976 33448999999999999999999
Q ss_pred HHHHHHHHhhccCCCC------------------------------cchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 651 FSILASKRLLDLEPKD------------------------------AGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 651 ~a~~~~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.|..+..++++.-|++ +......+.++....+++.|.+.|.+...
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999888877655543 33455666777788888888888876544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-11 Score=120.65 Aligned_cols=213 Identities=13% Similarity=0.144 Sum_probs=174.2
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 004425 476 SQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLL 552 (754)
Q Consensus 476 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 552 (754)
-.|+.-.+.+-++..++..-.++ ..|--+..+|....+.++.+..|+.... .|..+|..-...+.-.+++++|..-
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 35777788888888887653322 2266666779999999999999988754 4566777777777788999999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 004425 553 FEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFS 630 (754)
Q Consensus 553 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 630 (754)
|++.++ +.|+. ..|..+.-+.-+.+.++++...|+..++ .++.-++.|+.....+..++++++|.+.|+.. ..+
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999998 77866 4788888888899999999999999988 57777899999999999999999999999854 344
Q ss_pred CC---------HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 631 ES---------PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 631 p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
|+ +.+-.+++-.- -.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++-.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 43 33334444433 33899999999999999999999999999999999999999999998753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.8e-15 Score=145.65 Aligned_cols=248 Identities=17% Similarity=0.135 Sum_probs=110.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTF-SRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQ 520 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 520 (754)
.|++++|++++++.......|+...| ..+...+...++.+.|.+.++.+...+-. ++..+..++.. ...+++++|.+
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccc
Confidence 66666666666544333223444433 33444555677788888888877765532 55566677776 68889999998
Q ss_pred HHhccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 004425 521 IFKGISD--RDIVSWNAMLSAYALHGLGKGALLLFEEMKREG-FAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGL 597 (754)
Q Consensus 521 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 597 (754)
+++..-+ ++...+..++..+...|+++++..+++++.... .+++...|..+...+.+.|+.++|.+.+++..+ .
T Consensus 99 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~ 175 (280)
T PF13429_consen 99 LAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE---L 175 (280)
T ss_dssp -------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H
T ss_pred ccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---c
Confidence 8877633 566677888888999999999999999987533 234556777888888999999999999999976 3
Q ss_pred CC-CccHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHH
Q 004425 598 RP-ILEHFACMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVS 674 (754)
Q Consensus 598 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 674 (754)
.| +......++..+...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...++++.+.+|+|+.....++
T Consensus 176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a 255 (280)
T PF13429_consen 176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYA 255 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccc
Confidence 45 4677888999999999999987777654 12346778999999999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHh
Q 004425 675 NMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 675 ~~~~~~g~~~~a~~~~~~m~ 694 (754)
+++...|+.++|.+++++.-
T Consensus 256 ~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 256 DALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHT----------------
T ss_pred cccccccccccccccccccc
Confidence 99999999999999988653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.5e-13 Score=133.56 Aligned_cols=244 Identities=10% Similarity=0.063 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhC-C-CCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 444 DEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTG-Y-AADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 444 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
+..+|+.+|...... +.-+......+..+|-..+++++++.+|+.+.+.. . .-+..+|.+.+--+-+.=.+..--+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 345566666553332 12222344455556666666666666666665432 1 12344454444332221111111111
Q ss_pred HhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC
Q 004425 522 FKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI 600 (754)
Q Consensus 522 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 600 (754)
+-.+....+.+|.++.++|.-+++++.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.... .+
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~ 485 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VD 485 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CC
Confidence 1111123345666666666666666666666666666 555 334666665556666666666666655522 33
Q ss_pred ccHHH---HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHH
Q 004425 601 LEHFA---CMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSN 675 (754)
Q Consensus 601 ~~~~~---~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 675 (754)
..+|+ -++-.|.++++++.|+-.|+++ .+.| +......++..+.+.|+.++|++++++++-++|.|+..-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 33433 4555566666666666666544 4444 44445555555666666666666666666666666666666666
Q ss_pred HHHhcCCchHHHHHHHHHhh
Q 004425 676 MYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 676 ~~~~~g~~~~a~~~~~~m~~ 695 (754)
++...+++++|...++++++
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 66666666666666666655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-10 Score=112.74 Aligned_cols=466 Identities=13% Similarity=0.091 Sum_probs=271.9
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHhccCCChHHHHHHHHHHHHHCCCCc----HHHHHHHHHH
Q 004425 129 SLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSV-ILEACSLLEDRIFGEQIHAFAIKSGFENN----VFVGTSLISM 203 (754)
Q Consensus 129 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~ 203 (754)
.|..-|..+....+|+..|+-..+...-|+.-.... +-+.+.+.+.+.+|.+++......-...+ ..+.+.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 345556667777888888888887777777655433 33446677788888888877665532222 2344555556
Q ss_pred hHhcCCHhHHHHHhccCCC--CCcch-HHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchH--------HHHHHHHhc
Q 004425 204 YFHSGCFREAENVFRGLAY--KDVRC-VNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTF--------TNVISVCYE 272 (754)
Q Consensus 204 ~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------~~ll~~~~~ 272 (754)
+.+.|.+++|+.-|+...+ ||..+ ||.+| ++..-|+.++..+.|.+|..-...||..-| ..|+.-..+
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i-~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLII-CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhh-hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 7788999999999887653 45543 55444 444567888888889888865444443322 222222222
Q ss_pred cCCchH--------HHHHHH---HHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCc--hhHHHHHHHHHhc
Q 004425 273 NLGVEE--------GKQLHG---LAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNL--ISWTALISGYVRS 339 (754)
Q Consensus 273 ~~~~~~--------a~~~~~---~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~ 339 (754)
...+.. |++..- .++.--+.||-.. -.+...+.++.-..... ..--.-...|.++
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 111111 111110 0000001111000 01111222111110000 0000112347788
Q ss_pred CChhHHHHHHHHhHhcCcccChhhHHHH--HHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHH
Q 004425 340 GHGGKAINGFLEFLDLGICCDSSCLATV--IDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARM 417 (754)
Q Consensus 340 g~~~~A~~~~~~m~~~g~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 417 (754)
|+++.|++++.-+.+..-+.-...-+.| +...-...++..|.++-+..+... .-+....+.-.+.-...|++++|.+
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 8888888888877655433222222222 222222345566666555544321 1111111111222334688888888
Q ss_pred HHhcCCCCChhhHHHHHH---HHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhC
Q 004425 418 LLDGFSCKYTAEFNAILS---GFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTG 494 (754)
Q Consensus 418 ~~~~~~~~~~~~~~~li~---~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 494 (754)
.+++....|.....+|.. .+-. .|+.++|++.|-++..- +..+...+..+...|....+...|.+++.+....
T Consensus 512 ~ykeal~ndasc~ealfniglt~e~--~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNIGLTAEA--LGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHcCchHHHHHHHHhcccHHH--hcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 888887777665555543 2333 78888888888776532 2334455666677777777888888777666542
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004425 495 YAADVIVGNALITMYAKCGSIDGAFQIFKGIS---DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGV 571 (754)
Q Consensus 495 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 571 (754)
++.|+.+..-|.+.|-+.|+-..|.+.+-.-- ..|+.+..-|...|.....+++|+.+|++..- +.|+.+-|-.+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 45678888888888888888888887654432 24555555577777777888888888888766 77888888777
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCC
Q 004425 572 LQACI-YSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGR 616 (754)
Q Consensus 572 l~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 616 (754)
+..|. +.|++++|..+|+..-. .++-+++....|+...+..|.
T Consensus 666 iasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc
Confidence 77654 57888888888888765 567777777777777666663
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-10 Score=110.85 Aligned_cols=314 Identities=11% Similarity=0.091 Sum_probs=222.4
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHH-HHHHHHhhhhcCCHHHHH
Q 004425 371 CSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFN-AILSGFMEKIADDEEDVM 449 (754)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~~~A~ 449 (754)
..+.|....|...+...+.. -+..|.+.+....-..+.+.+..+....+..+...-. .+..++-. ..+.++++
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e--l~q~~e~~ 247 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE--LHQHEEAL 247 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH--HHHHHHHH
Confidence 34456666666666555431 1223333333333334444444444333332211111 12234444 55777888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 004425 450 VLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGY--AADVIVGNALITMYAKCGSIDGAFQIFKGISD 527 (754)
Q Consensus 450 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 527 (754)
.-.+.....|+.-+...-+....+.-...+++.|..+|+++.+... --|..+|+.++-.-..+.++.--....-.+.+
T Consensus 248 ~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idK 327 (559)
T KOG1155|consen 248 QKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK 327 (559)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 8888888777666655555555556678889999999999988731 12566776665333332233222222223333
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHH
Q 004425 528 RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFA 605 (754)
Q Consensus 528 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 605 (754)
--+.|..++.+-|.-.++.++|+..|++.++ +.|... .|+.+..-|...++...|++-++.+++ +.| |-..|-
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWY 402 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWY 402 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHh
Confidence 3445666778888889999999999999999 677764 777788899999999999999999966 444 556888
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCc
Q 004425 606 CMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGML 683 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 683 (754)
.++.+|.-.+...=|+-+|++. ..+| |+..|.+|+..|.+.++.++|++.|++++...-.+..+|..|+++|.+.++.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 9999999999999999999876 5566 8999999999999999999999999999999888889999999999999999
Q ss_pred hHHHHHHHHHhh
Q 004425 684 DEAAKVRTTMND 695 (754)
Q Consensus 684 ~~a~~~~~~m~~ 695 (754)
++|...+++-.+
T Consensus 483 ~eAa~~yek~v~ 494 (559)
T KOG1155|consen 483 NEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-08 Score=101.31 Aligned_cols=458 Identities=13% Similarity=0.109 Sum_probs=254.1
Q ss_pred hhhhHHHHHHHHccCChhHHHHHhccCC-----CCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004425 93 TFEANNLINLYAKFNRLDVAQKLFDGML-----VRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILE 167 (754)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 167 (754)
+..|-..+..+.++|++..-+..|+... ......|...+.-.-..+-++-+++++++..+- ++..-.--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 3456666667777888888888888752 224567888888888888888888888887653 4444667777
Q ss_pred HhccCCChHHHHHHHHHHHHHC------CCCcHHHHHHHHHHhHhcCCH---hHHHHHhccCCCC--C--cchHHHHHHH
Q 004425 168 ACSLLEDRIFGEQIHAFAIKSG------FENNVFVGTSLISMYFHSGCF---REAENVFRGLAYK--D--VRCVNFMILE 234 (754)
Q Consensus 168 ~~~~~~~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~--~--~~~~~~li~~ 234 (754)
.++..+++++|.+.+..++... .+.+...|.-+.+..++.-+. -....+++.+..+ | ...|++|.+.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7888888888888877765432 244555666666666554332 2233445544433 2 3368888888
Q ss_pred HHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHH-HhcCCCChhHHHHHHHHHHhcCChHH
Q 004425 235 YNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAV-KFGVVREISVGNAIVTMYGKHGMSEE 313 (754)
Q Consensus 235 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~ 313 (754)
|.+.|.+++|.++|++-.+. ..+..-|+.+.++|+.-.....+..+ +... +.|-+-+... ++-
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~ed~~d-------------l~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEEDDVD-------------LEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChhhhhh-------------HHH
Confidence 89999999999888886654 22444566666666542211111110 0000 1111111111 111
Q ss_pred HHHHHHccCC---------------CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccCh------hhHHHHHHHhc
Q 004425 314 AERMFDAISE---------------RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDS------SCLATVIDGCS 372 (754)
Q Consensus 314 A~~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~ 372 (754)
...-|+.+.+ .++..|..-+. +..|+..+-...|.+..+. +.|.. ..+..+.+.|-
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHH
Confidence 1222222211 24455554443 3356667777777776654 33322 23555566666
Q ss_pred ccCChHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHhCCCHHHHHHHHhcCC--CCChhhHHHHHHHHhhhhcCCHHH
Q 004425 373 VCSNLELGLQLHGFAIKHGYLSD---VRLGTALVDIYAKGGDLKSARMLLDGFS--CKYTAEFNAILSGFMEKIADDEED 447 (754)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~ 447 (754)
..|+++.|..+|++..+...+-- ..+|.....+-.+..+++.|.++.+... +.+.. ..+.. ++..-+
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~------~~~yd--~~~pvQ 470 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE------LEYYD--NSEPVQ 470 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh------hhhhc--CCCcHH
Confidence 77777777777777766443322 3344444555555556666666655443 11100 01111 111100
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 004425 448 VMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD 527 (754)
Q Consensus 448 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 527 (754)
+ .+.-+...|...++.-...|-++..+.+++.+++..+. ++.+.-.....+-...-++++.++|++-..
T Consensus 471 ~----------rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 471 A----------RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred H----------HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 0 01112334555566666667777788888888776653 222222233334555667888888876543
Q ss_pred ----CChh-HHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 004425 528 ----RDIV-SWNAMLSAYALH---GLGKGALLLFEEMKREGFAPDDISILGVLQA--CIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 528 ----~~~~-~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~~~~ 593 (754)
|++. .|+..+.-+.+. ...+.|..+|++.++ |.+|...-+.-|+.+ -.+-|....|+.+++++..
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5553 576655544432 347788888888887 666665432223222 2234666666666665443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-09 Score=104.14 Aligned_cols=192 Identities=13% Similarity=0.096 Sum_probs=100.7
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcC
Q 004425 468 SRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHG 544 (754)
Q Consensus 468 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 544 (754)
..+..-|+-.++.++|..+|+++++.+ +.....|+.+.+-|....+...|.+-|+...+ .|-..|-.|.++|.-.+
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence 334444444555555555555555544 23344555555566666666666666655443 34455666666666666
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHH
Q 004425 545 LGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 545 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
.+.-|+-.|++..+ ++|+ ...|.+|..+|.+.++.++|++.|.+... .| ..+...+..++++|.+.++.++|..+
T Consensus 413 Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~-~~-dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 413 MHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL-LG-DTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred chHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh-cc-ccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 66666666666555 4453 34556666666666666666666666554 12 22344555666666666666666555
Q ss_pred HHhC-------C-CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Q 004425 624 INSS-------P-FSESP-LLWRTLVSVSKLMANSKFSILASKRLLDLEP 664 (754)
Q Consensus 624 ~~~~-------~-~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 664 (754)
+++- + ..|.. .+---|...+.+.+++++|.....+...-++
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 5432 1 11211 1111244445555666666655555554433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.8e-12 Score=127.47 Aligned_cols=277 Identities=16% Similarity=0.090 Sum_probs=213.9
Q ss_pred CHHHHHHHHhcCC--CCChh-hHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccchHHHHH
Q 004425 411 DLKSARMLLDGFS--CKYTA-EFNAILSGFMEKIADDEEDVMVLFSQQRLAG--MEPDPVTFSRLLSLSASQACLVRGRS 485 (754)
Q Consensus 411 ~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~ 485 (754)
+..+|...|..++ ..|.. ....+..+|.. .+++++|.++|+.+.+.. ..-+..+|.+.+..+-+.-.+. .
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFE--l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls---~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFE--LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS---Y 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH---H
Confidence 4567777777754 22333 22345567777 888888888888887742 1123467777776543322211 1
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004425 486 LHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR---DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFA 562 (754)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 562 (754)
+-+.+.+. -+-.+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....++.|...|+..+. +.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 11222222 2567899999999999999999999999999764 446788888888889999999999999887 66
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 004425 563 PDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRT 638 (754)
Q Consensus 563 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 638 (754)
|+. ..|..+...|.++++++.|.-.|+++. .+.|. .....++...+.+.|+.|+|+++++++ -..| |+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 765 488889999999999999999999995 46675 556778889999999999999999976 3344 6666656
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
-+..+...+++++|...++++.++-|+++..|..++.+|-+.|+.+.|..-|.-|.+...
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 666777889999999999999999999999999999999999999999999988766444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.9e-11 Score=124.00 Aligned_cols=274 Identities=11% Similarity=0.076 Sum_probs=189.0
Q ss_pred CCCHHHHHHHHhcCCCC-ChhhHHHHHH--HHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhcccchHHH
Q 004425 409 GGDLKSARMLLDGFSCK-YTAEFNAILS--GFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFS--RLLSLSASQACLVRG 483 (754)
Q Consensus 409 ~g~~~~A~~~~~~~~~~-~~~~~~~li~--~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a 483 (754)
.|+++.|++.+...... +....+.++. +..+ .|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~--~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQ--RGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 46666666666654422 1122222332 2234 78888888888888764 55553332 234567778888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCh-----------hHHHHHHHHHHHcCChHHHHHH
Q 004425 484 RSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDI-----------VSWNAMLSAYALHGLGKGALLL 552 (754)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~ 552 (754)
...++.+.+.. +-++.....+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888887765 45677777888888888888888888887764211 1333344444444555666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 004425 553 FEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE 631 (754)
Q Consensus 553 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 631 (754)
++.+.+. .+.+......+..++...|+.++|.+.+++..+ ..|+.... ++......++.+++++.+++. ...|
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 6665432 334566777888889999999999999988855 34443222 223333558889998888765 3345
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 632 -SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 632 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
|+....++...|...+++++|...++++++.+|+ ...+..|+.++.+.|+.++|...+++-.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777889999999999999999999999999999 4567899999999999999999998653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.1e-11 Score=121.98 Aligned_cols=149 Identities=11% Similarity=-0.020 Sum_probs=102.9
Q ss_pred HHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004425 509 YAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGI 585 (754)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 585 (754)
.....+.+...++++.+.+ .++.....+..++...|+.++|.+++++..+ ..||... .++.+....++.+++.
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l--~~l~~~l~~~~~~~al 314 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERL--VLLIPRLKTNNPEQLE 314 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHH--HHHHhhccCCChHHHH
Confidence 3334455566666666643 4566677777788888888888888887776 3344421 1233444557888888
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 586 CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
+..+...+ ..+-+...+.++..++.+.|++++|.+.|++. ...|+...+..+...+...|+.++|.+.+++.+.+.
T Consensus 315 ~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 315 KVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 88887765 33344556778888888888888888888765 556887777788888888888888888888887653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-08 Score=95.94 Aligned_cols=480 Identities=11% Similarity=0.051 Sum_probs=332.6
Q ss_pred HhcCCHhHHHHHhccCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHH
Q 004425 205 FHSGCFREAENVFRGLAY---KDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQ 281 (754)
Q Consensus 205 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 281 (754)
...+++..|..+|++... ++...|---+..=.++.....|..++++....=...|..=| --+..=-..|++..|.+
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHH
Confidence 345677788888887654 35566777777778888888888888887664222232222 22222334688889999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccC--CCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCccc
Q 004425 282 LHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAIS--ERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICC 359 (754)
Q Consensus 282 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 359 (754)
+|+.-.+. .|+...|++.|+.=.+-..++.|..++++.. .|++.+|--...--.+.|....|..+|....+. -.
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence 99887664 7899999999999889999999999998864 588888888888888889988888888877653 12
Q ss_pred Chh----hHHHHHHHhcccCChHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHhCCCHHHHHHHH--------hcCCCCC
Q 004425 360 DSS----CLATVIDGCSVCSNLELGLQLHGFAIKHGYLS-DVRLGTALVDIYAKGGDLKSARMLL--------DGFSCKY 426 (754)
Q Consensus 360 ~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~~~ 426 (754)
|.. .|.++..-=.+...++.|.-+|+..+.+=... ....|..+...--+-|+.....+.. +.+...|
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 232 23333333345677888888888888753222 2445555555544556544443332 2233333
Q ss_pred ---hhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH----HH-H---HhcccchHHHHHHHHHHHHh
Q 004425 427 ---TAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP--VTFSRL----LS-L---SASQACLVRGRSLHAYSIKT 493 (754)
Q Consensus 427 ---~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l----l~-~---~~~~~~~~~a~~~~~~~~~~ 493 (754)
-.+|--.+..--. .|+.+...++|++.+.. ++|-. ..|... |+ + -....+.+.+.++++..++
T Consensus 319 p~nYDsWfdylrL~e~--~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEES--VGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred CCCchHHHHHHHHHHh--cCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 3456666666666 89999999999999875 45533 111111 11 1 1356788999999999988
Q ss_pred CCCCchhHHHHHHHHH----HhcCCHHHHHHHHhccC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHH
Q 004425 494 GYAADVIVGNALITMY----AKCGSIDGAFQIFKGIS--DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDI 566 (754)
Q Consensus 494 ~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 566 (754)
=++....++.-+--+| .++.++..|.+++.... .|-..++...|..-.+.++++....+|++.++ ..| |..
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~ 472 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCY 472 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhH
Confidence 3444555555444344 57889999999998775 47778888888888999999999999999999 556 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSESPLLWRTLVSVSK- 644 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~- 644 (754)
+|......-...|+.+.|..+|+-+...-.+......|-..|+.=...|.++.|..+++++ ...+...+|-++...-.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s 552 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEAS 552 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcc
Confidence 8888888888899999999999999874333334456778888889999999999999876 44456668988876554
Q ss_pred ----hcC-----------ChHHHHHHHHHhhcc----CCCCcc--hHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 645 ----LMA-----------NSKFSILASKRLLDL----EPKDAG--SFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 645 ----~~g-----------~~~~a~~~~~~~~~~----~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
..+ +...|..+|+++... +|.... .+-..-+.-...|.-.+...+-++|..
T Consensus 553 ~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 553 ASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred ccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 334 667888888887653 333222 122223334456777777777777754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-08 Score=99.08 Aligned_cols=443 Identities=15% Similarity=0.100 Sum_probs=321.7
Q ss_pred HcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHH
Q 004425 237 KAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAER 316 (754)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 316 (754)
..+++..|..+|++.+.... -+...+.--+..=.+...+..|..+++..+..-...|. .|--.+.+=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHH
Confidence 45677889999999876542 24444555566667788999999999998876433333 34444555566899999999
Q ss_pred HHHccC--CCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHH-hCC-
Q 004425 317 MFDAIS--ERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIK-HGY- 392 (754)
Q Consensus 317 ~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~- 392 (754)
+|++-. +|+...|++.|+--.+...++.|..+|++..- +.|+..+|..-...=.+.|+...+..+|+.+++ .|-
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 999876 49999999999999999999999999999876 469999999888888899999999999999887 221
Q ss_pred CcchhHHHHHHHHHHhCCCHHHHHHHHhcC----CCCC-hhhHHHHHHHHhhhhcCCH---HHHHH-----HHHHHHHcC
Q 004425 393 LSDVRLGTALVDIYAKGGDLKSARMLLDGF----SCKY-TAEFNAILSGFMEKIADDE---EDVMV-----LFSQQRLAG 459 (754)
Q Consensus 393 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~li~~~~~~~~~~~---~~A~~-----~~~~m~~~g 459 (754)
..+...+.++...-.++..++.|.-+|+-. +... ...|.....-=-+ -|+. ++++- -++.++..+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKq--fGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQ--FGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH--hcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 233455666666666788888888887643 3222 2233333322222 4443 33332 234444432
Q ss_pred CCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCch--hHHHHHHHH--------HHhcCCHHHHHHHHhccCC--
Q 004425 460 MEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADV--IVGNALITM--------YAKCGSIDGAFQIFKGISD-- 527 (754)
Q Consensus 460 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~g~~~~A~~~~~~~~~-- 527 (754)
+-|-.+|--.++.-...|+.+...++++.++.. ++|-. ..|.-.|-. -....+++.+.++|+...+
T Consensus 319 -p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI 396 (677)
T KOG1915|consen 319 -PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI 396 (677)
T ss_pred -CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 456678888888888999999999999999874 44421 112221111 1346788999999987754
Q ss_pred CC-hh----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-Cc
Q 004425 528 RD-IV----SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-IL 601 (754)
Q Consensus 528 ~~-~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~ 601 (754)
|. .. .|-....--.++.+...|.+++...+ |.-|...+|...|..-.+.+.+|....+|++..+ ..| +.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~c 471 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPENC 471 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHhh
Confidence 22 22 34444444567788999999988766 5789999999999999999999999999999976 344 46
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINSSPFSE----SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
.+|.-.+.+=...|+.+.|..+|+-.-..| -...|.+.+..-...|.++.|..+++++++..+... .|...+..-
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe 550 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFE 550 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHh
Confidence 678888888888999999999998653344 367899999999999999999999999999888744 777776654
Q ss_pred H-----hcC-----------CchHHHHHHHHH
Q 004425 678 A-----GQG-----------MLDEAAKVRTTM 693 (754)
Q Consensus 678 ~-----~~g-----------~~~~a~~~~~~m 693 (754)
. ..| ....|..+|+..
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferA 582 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDENIKRARKIFERA 582 (677)
T ss_pred ccccccccccchhhhhcchhHHHHHHHHHHHH
Confidence 4 334 455677777765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-10 Score=116.74 Aligned_cols=213 Identities=12% Similarity=-0.003 Sum_probs=107.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH-------HhcC
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPD-PVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMY-------AKCG 513 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-------~~~g 513 (754)
.|++++|...++.+.+. .|+ ...+..+...+...|+++.+.+++..+.+.+..+.......-..++ ....
T Consensus 166 ~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 166 QNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555555554 232 2344455555555666666666655555554322221111111111 1111
Q ss_pred CHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHH
Q 004425 514 SIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISIL-GVLQACIYSGLSEGGICLFN 589 (754)
Q Consensus 514 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~ 589 (754)
..+...+.++..++ .+...+..+...+...|+.++|.+++++..+ ..||..... .++..+.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~------------- 308 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIP------------- 308 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhh-------------
Confidence 22333334444432 3555666666666777777777777777666 334432110 0111111
Q ss_pred HHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH--HHHHHHHHHHHhcCChHHHHHHHH--HhhccC
Q 004425 590 EIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SP--LLWRTLVSVSKLMANSKFSILASK--RLLDLE 663 (754)
Q Consensus 590 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~ 663 (754)
....++.+++++.+++. ...| |+ ....++...|.+.|++++|...++ ++++..
T Consensus 309 ---------------------~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~ 367 (409)
T TIGR00540 309 ---------------------RLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ 367 (409)
T ss_pred ---------------------hcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC
Confidence 01123333444444322 1223 33 555667777777777777777777 466666
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 664 PKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 664 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
|++ ..+..++.++.+.|+.++|.+++++-
T Consensus 368 p~~-~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 368 LDA-NDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 663 33557777777777777777777764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-10 Score=120.20 Aligned_cols=282 Identities=13% Similarity=0.013 Sum_probs=180.1
Q ss_pred hcCChhHHHHHHHHhHhcCcccChh-hHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHH
Q 004425 338 RSGHGGKAINGFLEFLDLGICCDSS-CLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSAR 416 (754)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 416 (754)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+..+.+..-.+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456677777766665443 33322 223334455666777777777777665432222233444567777788888888
Q ss_pred HHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---hcccchHHHHHHHHHH
Q 004425 417 MLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLS---ASQACLVRGRSLHAYS 490 (754)
Q Consensus 417 ~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~ 490 (754)
..++.+. +.+...+..+...+.. .|++++|.+++..+.+.++.+.......-..+. ...+..+.+.+.+..+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~--~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIR--SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8887765 3455567777778888 899999999999999886443332211111111 2222333333444444
Q ss_pred HHhC---CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004425 491 IKTG---YAADVIVGNALITMYAKCGSIDGAFQIFKGISD--RDIVS---WNAMLSAYALHGLGKGALLLFEEMKREGFA 562 (754)
Q Consensus 491 ~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 562 (754)
.+.. .+.++..+..++..+...|+.++|.+++++..+ ||... +..........++.+.+++.+++..+ ..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hC
Confidence 4432 124788889999999999999999999998865 44331 12222223345677888888888776 45
Q ss_pred CCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHh
Q 004425 563 PDDI---SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 563 p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (754)
|+.. ...++...|.+.|++++|.++|+.... ....|+.+.+..+..++.+.|+.++|.+++++
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6554 345677778888888888888885444 45667777777788888888888888777765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-09 Score=108.86 Aligned_cols=245 Identities=13% Similarity=0.054 Sum_probs=165.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
.+++.+.+++++...+.. +++...+..-|..+...|+..+-..+-..+++. .+..+.+|-++.-.|.-.|+.++|++.
T Consensus 257 ~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 566666666666666542 344444444455555666655555555555553 355667777777777777888888888
Q ss_pred HhccCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 004425 522 FKGISDRD---IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGL 597 (754)
Q Consensus 522 ~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 597 (754)
|.+...-| ...|-.....|+-.|..++|+..+...-+ +-|- ...+.-+.--|.+.++.+.|.++|.+. +++
T Consensus 335 ~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A---~ai 409 (611)
T KOG1173|consen 335 FSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA---LAI 409 (611)
T ss_pred HHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHHHHHHH---Hhc
Confidence 87765433 35787788888888888888887777666 3332 234555566677788888888888777 455
Q ss_pred CCC-ccHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 598 RPI-LEHFACMVDLLGRAGRLSEAMNLINSSP--------FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 598 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
-|+ +..++-+.-+....+.+.+|..+|+..- ..+ =..+|+.|+.+|++.+..++|+..+++++.+.|.++
T Consensus 410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~ 489 (611)
T KOG1173|consen 410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA 489 (611)
T ss_pred CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch
Confidence 554 3455555555666777778877776431 111 134567777888888888888888888888888888
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
.+|..+|-+|...|+.+.|.+.|.+.
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 88888888888888888888887764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=129.28 Aligned_cols=252 Identities=13% Similarity=0.156 Sum_probs=106.8
Q ss_pred HHHHHHHhCCCHHHHHHHHhcC-C----CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 004425 401 ALVDIYAKGGDLKSARMLLDGF-S----CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSA 475 (754)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~~-~----~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 475 (754)
.+...+.+.|++++|.++++.. . ..+...|..+...... .++.+.|...++++...+.. +...+..++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~--~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS--LGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccc-ccccccccccc-c
Confidence 3455566667777777766432 1 2233334444444444 77788888888887765422 33445555555 6
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCChhHHHHHHHHHHHcCChHHHH
Q 004425 476 SQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS-----DRDIVSWNAMLSAYALHGLGKGAL 550 (754)
Q Consensus 476 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~ 550 (754)
..+++++|.++.....+.. +++..+..++..+.+.|+++++.++++.+. ..+...|..+...+.+.|+.++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7788888888877665543 456667778888889999999998888753 356678888889999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 004425 551 LLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-P 628 (754)
Q Consensus 551 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 628 (754)
+.+++.++ ..|+ ......++..+...|+.+++.++++...+. .+.+...+..++.+|...|+.++|+.++++. .
T Consensus 167 ~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 167 RDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999998 6676 456778888999999999999999888773 3566677889999999999999999999876 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Q 004425 629 FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDL 662 (754)
Q Consensus 629 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 662 (754)
..| |+.....+..++...|+.++|..+.+++++.
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 234 7888889999999999999999999887753
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-10 Score=113.09 Aligned_cols=198 Identities=13% Similarity=0.028 Sum_probs=164.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004425 497 ADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQ 573 (754)
Q Consensus 497 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 573 (754)
.....+..+...|...|++++|...+++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677788899999999999999987753 345678888899999999999999999999843 224457778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 004425 574 ACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKF 651 (754)
Q Consensus 574 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 651 (754)
.+...|++++|.+.++++............+..+..++.+.|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999773222233456778899999999999999999865 3334 57788899999999999999
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 652 SILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 652 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
|...++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888999999999999999999999888755
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-09 Score=101.65 Aligned_cols=276 Identities=15% Similarity=0.138 Sum_probs=188.3
Q ss_pred CCCHHHHHHHHhcCCCC-ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHH
Q 004425 409 GGDLKSARMLLDGFSCK-YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLH 487 (754)
Q Consensus 409 ~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 487 (754)
.|++..|++...+-.+. +....+.++.+-+....|+.+.+-.++.+..+.--.++...+-+..+.....|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 68888888887765532 22233444433333227888888888887776533444455566666777788888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCh-----------hHHHHHHHHHHHcCChHHHHHHHHHH
Q 004425 488 AYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDI-----------VSWNAMLSAYALHGLGKGALLLFEEM 556 (754)
Q Consensus 488 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m 556 (754)
..+.+.+ +-.+.+......+|.+.|++.+...+...+.+... .+|+.++.-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8887765 44666777778888888888888888888765322 35666666655555555544455554
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHH----HhCCCCCC
Q 004425 557 KREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLI----NSSPFSES 632 (754)
Q Consensus 557 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~p~ 632 (754)
-++ .+-+...-..++.-+...|+.++|.++.+...+ .+..|+. ..++.. .+-++.+.=++.+ ...+. +
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L---~~~~~~-l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL---CRLIPR-LRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH---HHHHhh-cCCCCchHHHHHHHHHHHhCCC--C
Confidence 432 444555556677777788888888888887777 3666662 112221 2334433333333 33333 4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
+..+.+|...|.+++.+.+|...++.+++..|+ ...|..++.+|.+.|+.++|..++++-.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 688899999999999999999999999999998 7789999999999999999999988764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-07 Score=95.18 Aligned_cols=595 Identities=15% Similarity=0.134 Sum_probs=332.4
Q ss_pred HHHHhccCCCcchhHHHHHHH----------HHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCC--CChhhHHHHH
Q 004425 64 LVKISIGSGDLKLGQAVHAFL----------LKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLV--RSAITWTSLI 131 (754)
Q Consensus 64 ll~~~~~~~~~~~a~~~~~~~----------~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li 131 (754)
.+..|.+++-+..+..+|.+. .+.|..|| |-.+|..+.+ -.++.+.++...+++ +....++.+.
T Consensus 474 AL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~ 549 (1666)
T KOG0985|consen 474 ALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIV 549 (1666)
T ss_pred HHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHH
Confidence 455555666665555555442 34566676 3345555554 556777776666643 3445566666
Q ss_pred HHHhcCCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCH
Q 004425 132 KGYLDDGDYESVLGIACDMYRSEEKFNEHTCSV-ILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCF 210 (754)
Q Consensus 132 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 210 (754)
..+........+..++-...+. ..|+.....+ +|.. -..+ |-++-+.+...+. -+.+-+..+.+.|.+.|-.
T Consensus 550 DlFme~N~iQq~TSFLLdaLK~-~~Pd~g~LQTrLLE~-NL~~----aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~ 622 (1666)
T KOG0985|consen 550 DLFMELNLIQQCTSFLLDALKL-NSPDEGHLQTRLLEM-NLVH----APQVADAILGNDM-FTHYDRAEIAQLCEKAGLL 622 (1666)
T ss_pred HHHHHHHhhhhhHHHHHHHhcC-CChhhhhHHHHHHHH-Hhcc----chHHHHHHHhccc-cccccHHHHHHHHHhcchH
Confidence 6666666666666665555433 3344332222 2211 1111 1222222222221 1223366677888899999
Q ss_pred hHHHHHhccCCC--CCcchHHH----HHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHH
Q 004425 211 REAENVFRGLAY--KDVRCVNF----MILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHG 284 (754)
Q Consensus 211 ~~A~~~~~~~~~--~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 284 (754)
..|++.+..+.. +.++.-+. -+-.|...-.++.+++.++.|...+++.|..+...+..-|+..-..+...++|+
T Consensus 623 qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE 702 (1666)
T KOG0985|consen 623 QRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFE 702 (1666)
T ss_pred HHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999988887653 11111111 123455556789999999999998888888777777776666655666666666
Q ss_pred HHHHh-----------cCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC------------------------------
Q 004425 285 LAVKF-----------GVVREISVGNAIVTMYGKHGMSEEAERMFDAISE------------------------------ 323 (754)
Q Consensus 285 ~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------------ 323 (754)
..... ++..|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 703 ~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~f 782 (1666)
T KOG0985|consen 703 SFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDF 782 (1666)
T ss_pred hhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEeccccc
Confidence 55431 3456777778889999999999999988765321
Q ss_pred -CCchhH------HHHHHHHHhcCChhHHHHHHHHhHhcCccc-----------ChhhHHHHHHHhcccCChHHHHHHHH
Q 004425 324 -RNLISW------TALISGYVRSGHGGKAINGFLEFLDLGICC-----------DSSCLATVIDGCSVCSNLELGLQLHG 385 (754)
Q Consensus 324 -~~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~~~~~~a~~~~~ 385 (754)
+|.+.| --.|..|.+.=++.+.-.+...+++....- ..+....+..-+-+.+++..-...++
T Consensus 783 VhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE 862 (1666)
T KOG0985|consen 783 VHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLE 862 (1666)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHH
Confidence 111111 123445554444333333333332221100 01112223333445555555555566
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcC------------CCCChh-------------------hHHHHH
Q 004425 386 FAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGF------------SCKYTA-------------------EFNAIL 434 (754)
Q Consensus 386 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------------~~~~~~-------------------~~~~li 434 (754)
..+..| ..|..++|+|...|...++-.+- ++++- .++|+. .-|+|.
T Consensus 863 ~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlf 939 (1666)
T KOG0985|consen 863 SLIQEG-SQDPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLF 939 (1666)
T ss_pred HHHhcc-CcchHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHH
Confidence 666666 34566677766666543332111 00000 000000 001111
Q ss_pred H----HHhhhhcCCH---HHH--------HHHHHHHHHcCCC--CCHHHHHHHHHHHhcccchHHHHHHHHHHHHhC--C
Q 004425 435 S----GFMEKIADDE---EDV--------MVLFSQQRLAGME--PDPVTFSRLLSLSASQACLVRGRSLHAYSIKTG--Y 495 (754)
Q Consensus 435 ~----~~~~~~~~~~---~~A--------~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~ 495 (754)
. -++. ..+. ++. ..+.++....++. .|+...+..+.++...+-..+-.+++++++-.+ +
T Consensus 940 K~~aRYlv~--R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~F 1017 (1666)
T KOG0985|consen 940 KSQARYLVE--RSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVF 1017 (1666)
T ss_pred HHHHHHHHh--ccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCccc
Confidence 1 1111 1111 111 1222222222211 122222333344444444444444444433110 0
Q ss_pred CCchhHHHH---------------------------HHHHHHhcCCHHHHHHHHhccCC---------------------
Q 004425 496 AADVIVGNA---------------------------LITMYAKCGSIDGAFQIFKGISD--------------------- 527 (754)
Q Consensus 496 ~~~~~~~~~---------------------------li~~~~~~g~~~~A~~~~~~~~~--------------------- 527 (754)
.-+....|. +.......+-+++|..+|+.-..
T Consensus 1018 se~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~ef 1097 (1666)
T KOG0985|consen 1018 SENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEF 1097 (1666)
T ss_pred ccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHH
Confidence 001111111 11222333445566666654321
Q ss_pred ----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccH
Q 004425 528 ----RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEH 603 (754)
Q Consensus 528 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 603 (754)
.....|+.+..+-.+.|...+|++-|-+. -|...|..++..+++.|.|++-.+++...+++ .-.|.+++
T Consensus 1098 Ae~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~ 1170 (1666)
T KOG0985|consen 1098 AERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS 1170 (1666)
T ss_pred HHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH
Confidence 23357999999999999999998876432 25678999999999999999999999888874 66676654
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCc
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGML 683 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 683 (754)
.|+-+|++.+++.|-++++. .|+..-.....+-|...|.++.|.-+|.. .+.|..|+..+...|.+
T Consensus 1171 --eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1171 --ELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEY 1236 (1666)
T ss_pred --HHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHH
Confidence 68899999999999888884 36777777888999999999988877753 45688888889999999
Q ss_pred hHHHHHHHHHhh
Q 004425 684 DEAAKVRTTMND 695 (754)
Q Consensus 684 ~~a~~~~~~m~~ 695 (754)
..|...-++...
T Consensus 1237 Q~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1237 QGAVDAARKANS 1248 (1666)
T ss_pred HHHHHHhhhccc
Confidence 988887766544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-08 Score=98.70 Aligned_cols=216 Identities=11% Similarity=0.004 Sum_probs=170.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
.|+.-.|...|+..+.....++.. |.-+...|....+.++....|+.+.+.+ +-++.+|-.-..++.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 788889999999998764333332 7777788999999999999999999876 45677888888888889999999999
Q ss_pred HhccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 004425 522 FKGISDR---DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGL 597 (754)
Q Consensus 522 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 597 (754)
|++...- ++..|-.+..+..+.+++++++..|++..++ -|+. ..|+.....+..++++++|.+.|+...+ +
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---L 491 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---L 491 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---h
Confidence 9988753 4556767777777889999999999999884 3554 6888899999999999999999999865 3
Q ss_pred CCC-------ccH--HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 598 RPI-------LEH--FACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 598 ~p~-------~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
.|+ ... .-.++-+-- .+++.+|+.++++. ...| ....+.+|...-.++|+.++|+.+|++...+.-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 443 111 112222222 38999999999876 5666 4678899999999999999999999998887544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.2e-07 Score=91.78 Aligned_cols=438 Identities=14% Similarity=0.143 Sum_probs=248.5
Q ss_pred HHHHhccCCCcchhHHHHHHHHHh-CCCCChhhhHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChhH
Q 004425 64 LVKISIGSGDLKLGQAVHAFLLKS-GSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYES 142 (754)
Q Consensus 64 ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 142 (754)
-+......+++-.-+..|+..+.. .+.-...+|.-.+......|-++.+.+++....+-++..-+--|.-+++.+++++
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHH
Confidence 344445667777777777766543 4455556788888888889999999999998877777778888999999999999
Q ss_pred HHHHHHHHHhCC------CCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCC--CCc--HHHHHHHHHHhHhcCCHhH
Q 004425 143 VLGIACDMYRSE------EKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGF--ENN--VFVGTSLISMYFHSGCFRE 212 (754)
Q Consensus 143 a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~--~~~~~~li~~~~~~g~~~~ 212 (754)
|-+.+....... -+-+...|..+-...++..+.-....+ +.+++.|+ -+| ...|++|.+-|.+.|.++.
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 999998875432 233445566665555555444333322 23334443 234 3589999999999999999
Q ss_pred HHHHhccCCCC--CcchHHHHHHHHHHc----------------CC------hhHHHHHHHHhHHCCC-----------C
Q 004425 213 AENVFRGLAYK--DVRCVNFMILEYNKA----------------GE------SEMAFHVFVHLLSSDF-----------E 257 (754)
Q Consensus 213 A~~~~~~~~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~g~-----------~ 257 (754)
|..+|++.... .+.-++.+.++|++- |+ .+-.+.-|+.+...+. .
T Consensus 267 arDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 267 ARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 99999876543 233344444444332 11 1122223333322210 0
Q ss_pred CCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHhcCChHHHHHHHHccCCCCc-----
Q 004425 258 PNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVR------EISVGNAIVTMYGKHGMSEEAERMFDAISERNL----- 326 (754)
Q Consensus 258 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----- 326 (754)
-+..++..-+ -+..|+..+-...+.+.++. +.| -...|..+.+.|-..|+++.|+.+|++...-+-
T Consensus 347 ~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 347 HNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred ccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 0111111111 11234444555555555543 112 123566677777777888888888777765222
Q ss_pred --hhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 004425 327 --ISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVD 404 (754)
Q Consensus 327 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 404 (754)
.+|......-.+..+++.|++++++.... |.... +. +...+..-++ .+ .-+..+|..+++
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~----~~-~yd~~~pvQ~-rl---------hrSlkiWs~y~D 485 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE----LE-YYDNSEPVQA-RL---------HRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh----hh-hhcCCCcHHH-HH---------HHhHHHHHHHHH
Confidence 33444444445566666676666554432 22211 11 1111111110 11 113445666666
Q ss_pred HHHhCCCHHHHHHHHhcCCCCChhhHHHHHH-HHhhhhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc---ccc
Q 004425 405 IYAKGGDLKSARMLLDGFSCKYTAEFNAILS-GFMEKIADDEEDVMVLFSQQRLAGMEPDP-VTFSRLLSLSAS---QAC 479 (754)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~~~ 479 (754)
.--..|-++....+++++.+-.+.|-..+++ +..-..+.-++++.+.|++-+..=--|+. ..|+..+..+.+ ...
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 6667788888888888877554444444443 21111155577788777765543223554 355555554432 235
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHhccC
Q 004425 480 LVRGRSLHAYSIKTGYAADVIVGNALITMYA----KCGSIDGAFQIFKGIS 526 (754)
Q Consensus 480 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~ 526 (754)
++.|+.+|+++++ |.+|.-. ..+.-.|+ +.|-...|..++++..
T Consensus 566 lEraRdLFEqaL~-~Cpp~~a--KtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHA--KTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7888888888888 6654322 22222333 3455556666666543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-09 Score=111.99 Aligned_cols=230 Identities=16% Similarity=0.158 Sum_probs=176.9
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHhccCC----------
Q 004425 465 VTFSRLLSLSASQACLVRGRSLHAYSIKT-----GY-AADV-IVGNALITMYAKCGSIDGAFQIFKGISD---------- 527 (754)
Q Consensus 465 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~---------- 527 (754)
.+...+...|...|+++.|..+++..++. |. .|.+ ...+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 56666888999999999999999888764 21 2222 2234577889999999999999998742
Q ss_pred CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhC--C
Q 004425 528 RD-IVSWNAMLSAYALHGLGKGALLLFEEMKR-----EGFAPDDI--SILGVLQACIYSGLSEGGICLFNEIEQIYG--L 597 (754)
Q Consensus 528 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 597 (754)
|. ..+++.|..+|.+.|++++|..++++..+ .|..+..+ -++.+...|...+.+++|..++....+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 24788888999999999999988887763 12222222 567778889999999999999998776443 2
Q ss_pred CCC----ccHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhcc-
Q 004425 598 RPI----LEHFACMVDLLGRAGRLSEAMNLINSS---------PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDL- 662 (754)
Q Consensus 598 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 662 (754)
.++ ..+++.|..+|...|++++|++++++. ...+ ....++.+...|.+.++.++|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 357899999999999999999999865 1122 2556788899999999999999999887653
Q ss_pred ---CCCC---cchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 663 ---EPKD---AGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 663 ---~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
.|++ ..+|..|+-+|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4544 4578999999999999999999988774
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=7e-12 Score=86.44 Aligned_cols=50 Identities=30% Similarity=0.461 Sum_probs=45.0
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 004425 223 KDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYE 272 (754)
Q Consensus 223 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 272 (754)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999999999999999999999999999998874
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-07 Score=92.82 Aligned_cols=183 Identities=16% Similarity=0.182 Sum_probs=121.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCC-hhHHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHh
Q 004425 503 NALITMYAKCGSIDGAFQIFKGISDRD-IVSWNAMLSAY--ALHGLGKGALLLFEEMKREGFAPDD--ISILGVLQACIY 577 (754)
Q Consensus 503 ~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~ 577 (754)
+.++.+|. +..+.+.++.......- ...+.+++... ++...+.+|.+++...-+. .|.. +.....+.....
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 34444444 45566777666665422 23344444332 2233578888888887763 3544 455566667888
Q ss_pred cCCHHHHHHHHH--------HHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHH
Q 004425 578 SGLSEGGICLFN--------EIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--------PFSE-SPLLWRTLV 640 (754)
Q Consensus 578 ~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~ 640 (754)
.|+++.|.+++. .+.+ .+..| .+...++..+.+.++.+-|.+++.+. ...+ -...|.-+.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 999999999998 5544 34444 45667888888888765555555432 2222 244555566
Q ss_pred HHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 641 SVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 641 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
..-.++|+.++|...++++++.+|++......++.+|++. +.+.|..+-+.+
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 6667889999999999999999999999999999999876 456666665544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-08 Score=95.40 Aligned_cols=267 Identities=12% Similarity=0.064 Sum_probs=136.0
Q ss_pred cCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhC-CCcc--hhHHHHHHHHHHhCCCHHHH
Q 004425 339 SGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHG-YLSD--VRLGTALVDIYAKGGDLKSA 415 (754)
Q Consensus 339 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A 415 (754)
+.+.++|.++|-+|.+.. +-+..+-.+|-+-|.+.|..+.|++++..+.++. ...+ ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 355677777777776521 1112223344455666777777777777766532 1111 12334466667788888888
Q ss_pred HHHHhcCCCCChh---hHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhcccchHHHHHHHH
Q 004425 416 RMLLDGFSCKYTA---EFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPV----TFSRLLSLSASQACLVRGRSLHA 488 (754)
Q Consensus 416 ~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~ 488 (754)
+.+|..+.+.+.. ....|+..|-. ..++++|++.-+++...+-++..+ .|.-+...+....+++.|..++.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~--treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQA--TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 8888877653332 45566777777 778888888877777665444432 22333333333444444555554
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 004425 489 YSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISI 568 (754)
Q Consensus 489 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 568 (754)
++.+.+ +..+..--.+. +.+...|+++.|++.|+...+.+..--..+.
T Consensus 205 kAlqa~-~~cvRAsi~lG-------------------------------~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 205 KALQAD-KKCVRASIILG-------------------------------RVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred HHHhhC-ccceehhhhhh-------------------------------HHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 444432 11222222233 4444555555555555555553211112244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 004425 569 LGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLI-NSSPFSESPLLWRTLVSVS 643 (754)
Q Consensus 569 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~ 643 (754)
..|..+|.+.|+.+++..++.++.+ ..+....-..+.+......-.++|...+ +.+.-+|+...+.-|+..-
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 4455555555555555555555533 2233333333333333333333443333 3334455555555555543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.1e-08 Score=92.66 Aligned_cols=308 Identities=12% Similarity=0.010 Sum_probs=216.4
Q ss_pred ccChhhHHHHHHHhc--ccCChHHHHHHHHHHHH-hCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHH
Q 004425 358 CCDSSCLATVIDGCS--VCSNLELGLQLHGFAIK-HGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAIL 434 (754)
Q Consensus 358 ~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 434 (754)
.|...+....+.+++ -.++...+...+-.+.. .-++.++.....+.+.+...|+..+|...|++...-|+.+...|=
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 344444444555543 34555555555555554 446778889999999999999999999999988766665554442
Q ss_pred H-HHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 004425 435 S-GFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCG 513 (754)
Q Consensus 435 ~-~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 513 (754)
. ++.-...|+.++...+...+.... +-....|-.-....-...+++.|..+-++.++.+ +.++..+-.-..++...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 1 222222888888888887776532 1222333333444456678888888888877654 233444444456778889
Q ss_pred CHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHH
Q 004425 514 SIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVL-QACI-YSGLSEGGICLF 588 (754)
Q Consensus 514 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~ 588 (754)
+.++|.-.|+.... -+..+|..|+.+|...|++.+|..+-+..... +..+..++..+. ..|. ....-++|.+++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 99999999987653 46789999999999999999998887776652 223444554442 3333 223347888888
Q ss_pred HHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 589 NEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 589 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
++. ..+.|+ ......+..++.+.|+.++++.++++. ...||....+.|.+.++..+.+.+|...|..++.++|++
T Consensus 428 ek~---L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKS---LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhh---hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 877 446676 346678888999999999999999865 567899999999999999999999999999999999997
Q ss_pred cchHH
Q 004425 667 AGSFI 671 (754)
Q Consensus 667 ~~~~~ 671 (754)
..+..
T Consensus 505 ~~sl~ 509 (564)
T KOG1174|consen 505 KRTLR 509 (564)
T ss_pred hHHHH
Confidence 65443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-08 Score=96.66 Aligned_cols=285 Identities=10% Similarity=0.024 Sum_probs=166.6
Q ss_pred cCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHH
Q 004425 238 AGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERM 317 (754)
Q Consensus 238 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 317 (754)
.|++.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+..++.+..+.--.++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577888888877766665432 3346666677777888888888888877765566667777777777888888888776
Q ss_pred HHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCc
Q 004425 318 FDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLS 394 (754)
Q Consensus 318 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 394 (754)
.+++.+ ++.........+|.+.|++.....++.+|.+.|+--|...- + .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~-----------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R-----------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H-----------H
Confidence 665543 56777788888888888888888888888887764443210 0 0
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004425 395 DVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLL 471 (754)
Q Consensus 395 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 471 (754)
...++..+++-....+..+.-...++..+ ..++..-.+++.-+.+ .|+.++|.++..+-.+.+..|+..+ +
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~--l~~~~~A~~~i~~~Lk~~~D~~L~~----~ 301 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR--LGDHDEAQEIIEDALKRQWDPRLCR----L 301 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH--cCChHHHHHHHHHHHHhccChhHHH----H
Confidence 01122333333333333333333333333 2233334444444555 6666666666666666655555221 2
Q ss_pred HHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhHHHHHHHHHHHcCChHHH
Q 004425 472 SLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS--DRDIVSWNAMLSAYALHGLGKGA 549 (754)
Q Consensus 472 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 549 (754)
-.+.+.++...-.+..+...+. .+.++..+.+|...|.+.+.|.+|...|+... +++..+|+.+..+|.+.|+..+|
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 2344445554444444444332 12333555566666666666666666666443 35555666666666666666666
Q ss_pred HHHHHHHHH
Q 004425 550 LLLFEEMKR 558 (754)
Q Consensus 550 ~~~~~~m~~ 558 (754)
.+++++.+.
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 666555543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-09 Score=118.08 Aligned_cols=244 Identities=11% Similarity=0.017 Sum_probs=181.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHh---------cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 004425 443 DDEEDVMVLFSQQRLAGMEPDPV-TFSRLLSLSA---------SQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKC 512 (754)
Q Consensus 443 ~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 512 (754)
+..++|+.+|++..+. .|+.. .|..+..++. ..+++++|...++++.+.+ +-+...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 4567888888888765 56553 3443333332 3345789999999998875 45677888888899999
Q ss_pred CCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 004425 513 GSIDGAFQIFKGISD--R-DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLF 588 (754)
Q Consensus 513 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 588 (754)
|++++|...|++..+ | +...|..+...+...|++++|+..+++.++ +.|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999998754 4 356788899999999999999999999999 567653 3334455577789999999999
Q ss_pred HHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 589 NEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 589 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
+++... ..|+ ...+..+..+|...|+.++|.+.++++ +..|+ ...++.+...+...| +.|...++++++..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 998762 2343 445778889999999999999999886 34454 455566666666666 4788888887775433
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 666 DAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 666 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
.+.....+..+|.-.|+-+.+..+ +++.+.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 333444588889999999998888 766554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.1e-09 Score=95.99 Aligned_cols=299 Identities=11% Similarity=0.075 Sum_probs=195.7
Q ss_pred CCHHHHHHHHhcCCCCChhhHH---HHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhcccch
Q 004425 410 GDLKSARMLLDGFSCKYTAEFN---AILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP------VTFSRLLSLSASQACL 480 (754)
Q Consensus 410 g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~ 480 (754)
.+.++|.+.|-+|.+.|..++. +|.+-|-+ .|..+.|+++-+.+.++ ||. ...-.|..-|...|-+
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRs--RGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRS--RGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHh--cchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3444444444444433333322 23333444 55555555555555442 222 1222334445556666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCh--------hHHHHHHHHHHHcCChHHHHHH
Q 004425 481 VRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDI--------VSWNAMLSAYALHGLGKGALLL 552 (754)
Q Consensus 481 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~ 552 (754)
+.|+.+|..+.+.+ ..-......|+..|-+..+|++|.++-+++.+-+. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 66666666666533 12233445677777777778777777766543221 2455677777778899999999
Q ss_pred HHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 004425 553 FEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFS 630 (754)
Q Consensus 553 ~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 630 (754)
+.+..+ ..|+.+ .-..+.+.....|+++.|++.++.+.+ .+..--.++...|..+|...|+.++...++.++ ...
T Consensus 203 l~kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 203 LKKALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999998 456655 334556678899999999999999987 344444677889999999999999999999765 455
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH--hcCCchHHHHHHHHHhhCCCccCCceeEEE
Q 004425 631 ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA--GQGMLDEAAKVRTTMNDLRLSKEAGCSWIE 708 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 708 (754)
+.+..-..+........-.+.|...+.+-+...|.--..|..+.--.. ..|++.+.....+.|....++..|.+..-.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~ 359 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQN 359 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecc
Confidence 566666666666666666778888888888899984444444433333 446799999999999888888777665555
Q ss_pred ECCEEEEEe
Q 004425 709 IDSKLHHFV 717 (754)
Q Consensus 709 ~~~~~~~~~ 717 (754)
.+=..|.|.
T Consensus 360 CGF~a~~l~ 368 (389)
T COG2956 360 CGFTAHTLY 368 (389)
T ss_pred cCCcceeee
Confidence 555666665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-08 Score=99.14 Aligned_cols=472 Identities=12% Similarity=0.025 Sum_probs=218.2
Q ss_pred cHHHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhcc--CCCCChhhHHHHHHHHhcC
Q 004425 60 DWPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDG--MLVRSAITWTSLIKGYLDD 137 (754)
Q Consensus 60 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~ 137 (754)
-+..+++-+....+++.|.-+-+.+...+..|+. ---+.++|.-.|.++.|..+... +.+.|..+......++.+.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3556666677777788888777777766644443 33466777778888888777654 5677899999999999999
Q ss_pred CChhHHHHHHHHHHh--CCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHH
Q 004425 138 GDYESVLGIACDMYR--SEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAEN 215 (754)
Q Consensus 138 ~~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (754)
.+|++|+.++..-.. .++.-+..+- +. .-+.+.+.... ++.....++-.--..|....+.++|..
T Consensus 96 k~~~~al~vl~~~~~~~~~f~yy~~~~-----~~--~l~~n~~~~~~------~~~~essic~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 96 KEWDQALLVLGRGHVETNPFSYYEKDA-----AN--TLELNSAGEDL------MINLESSICYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHhcccchhhcchhhcchhh-----hc--eeccCcccccc------cccchhceeeeeeehhhhhccHHHHHH
Confidence 999999998883210 0000010000 00 00000000000 000000000001122333344555555
Q ss_pred HhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCC----CCcchHHHHHHHH-hccCCchHHHHHHHHHHHhc
Q 004425 216 VFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFE----PNDYTFTNVISVC-YENLGVEEGKQLHGLAVKFG 290 (754)
Q Consensus 216 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~g 290 (754)
.|.+....|+..+.++..--... .-.+.+.|+.+...... -+......+.... ++..+.+ ....-.+..-.|
T Consensus 163 ~Y~~Al~~D~~c~Ea~~~lvs~~--mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~-~~~r~~~~sl~~ 239 (611)
T KOG1173|consen 163 KYKEALLADAKCFEAFEKLVSAH--MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE-SLTRNEDESLIG 239 (611)
T ss_pred HHHHHHhcchhhHHHHHHHHHHH--hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc-ccccCchhhhhh
Confidence 55554444444443332211110 11111111111111000 0111111111100 0000000 000000000011
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHH
Q 004425 291 VVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDG 370 (754)
Q Consensus 291 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 370 (754)
..-+..+...-. .-+...+++.+..++++...+. .++....+..-|..
T Consensus 240 l~~~~dll~~~a-------------------------------d~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~ 287 (611)
T KOG1173|consen 240 LAENLDLLAEKA-------------------------------DRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIAC 287 (611)
T ss_pred hhhcHHHHHHHH-------------------------------HHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHH
Confidence 122222223333 3344445555555555555443 12233333333334
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHH
Q 004425 371 CSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEED 447 (754)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~ 447 (754)
+...|+..+-..+=..+++. .+....+|-++.--|...|+..+|++.|.+.. ..-...|-.+..+|+. .+..++
T Consensus 288 l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~--e~EhdQ 364 (611)
T KOG1173|consen 288 LYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG--EGEHDQ 364 (611)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh--cchHHH
Confidence 44444433333333333332 23445566666666666677777777776554 3334467777778887 888888
Q ss_pred HHHHHHHHHHc--CC-CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 004425 448 VMVLFSQQRLA--GM-EPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKG 524 (754)
Q Consensus 448 A~~~~~~m~~~--g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 524 (754)
|+..+...-+. |. .|. --+.--|.+.++.+.|.+++.++.... +.|+.+.+-+.-.....+.+.+|..+|+.
T Consensus 365 AmaaY~tAarl~~G~hlP~----LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 365 AMAAYFTAARLMPGCHLPS----LYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred HHHHHHHHHHhccCCcchH----HHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHH
Confidence 88777665542 21 121 122334566677777777777666532 44566666655555555666666666654
Q ss_pred cCC------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004425 525 ISD------R----DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEI 591 (754)
Q Consensus 525 ~~~------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 591 (754)
... + -..+++.|..+|.+.+.+++|+..+++.+. ..| |..++.++.-.+...|+++.|+..|.+.
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 421 0 112334444444444444444444444444 222 2234444444444444444444444444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-11 Score=83.94 Aligned_cols=50 Identities=32% Similarity=0.521 Sum_probs=47.4
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004425 528 RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIY 577 (754)
Q Consensus 528 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 577 (754)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-07 Score=96.10 Aligned_cols=445 Identities=14% Similarity=0.071 Sum_probs=232.8
Q ss_pred HHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC---CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchH
Q 004425 187 KSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYK---DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTF 263 (754)
Q Consensus 187 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 263 (754)
...+..|..+|..|.-+..++|+++.+.+.|++...- ....|+.+-..+...|.-..|+.++++-....-.|+..+-
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3446778899999999999999999999999876643 4557899999999999999999999886654434555554
Q ss_pred HHHHHH-Hh-ccCCchHHHHHHHHHHHhc--CC--CChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHH
Q 004425 264 TNVISV-CY-ENLGVEEGKQLHGLAVKFG--VV--REISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYV 337 (754)
Q Consensus 264 ~~ll~~-~~-~~~~~~~a~~~~~~~~~~g--~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 337 (754)
..++.. |. +.+.++++..+-...+... .. .....|-.+.-+|...-. +.+. +. -
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~--~s------e 455 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANL--KS------E 455 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCC--hH------H
Confidence 444433 33 3456666666666555521 11 112222222222221100 0000 00 0
Q ss_pred hcCChhHHHHHHHHhHhcC-cccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHH
Q 004425 338 RSGHGGKAINGFLEFLDLG-ICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSAR 416 (754)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 416 (754)
+.....++++.+++..+.+ -.|+...|.++ -++..++++.|.+..++..+.+-..+...+.-|.-.+...+++.+|+
T Consensus 456 R~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 0111234555555554432 22333333222 23445566666666666666555556666666666666666666666
Q ss_pred HHHhcCCCCChhhHHHHH-HHHhhhhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHh
Q 004425 417 MLLDGFSCKYTAEFNAIL-SGFMEKIADDEEDVMVLFSQQRLA--GMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKT 493 (754)
Q Consensus 417 ~~~~~~~~~~~~~~~~li-~~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 493 (754)
.+.+.....-...++.|. .......-++.++++.....+..- ...+= ...++-....+....+.-.
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~-----------q~~~~~g~~~~lk~~l~la 602 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV-----------QQTLDEGKLLRLKAGLHLA 602 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH-----------hhhhhhhhhhhhhcccccC
Confidence 665543311111111110 011110145555555555544431 00000 0000000000000000000
Q ss_pred --CCCCchhHHHHHHHHHHhc---CCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 004425 494 --GYAADVIVGNALITMYAKC---GSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISI 568 (754)
Q Consensus 494 --~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 568 (754)
...-.+.++..+....... -..+..+..+.....|+. +|..+ ...|
T Consensus 603 ~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~-~~~~~----------------------------~~lw 653 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS-LWYLL----------------------------QKLW 653 (799)
T ss_pred cccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc-hHHHH----------------------------HHHH
Confidence 0000111111111111100 000011111111111221 11111 1123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHh
Q 004425 569 LGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLGRAGRLSEAMNLINS-SPFSE-SPLLWRTLVSVSKL 645 (754)
Q Consensus 569 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~ 645 (754)
......+.+.+..++|...+.+... +.| ....|......+...|.++||.+.|.. ....| ++.+..++...+..
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 3444455566666666666655533 223 234556666777778888888877654 35566 47777888888888
Q ss_pred cCChHHHHH--HHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 646 MANSKFSIL--ASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 646 ~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
.|+...|.. ++..+++++|.++.+|..||.++...|+.++|.+.|+...+.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 888888888 899999999999999999999999999999999998877553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-07 Score=99.18 Aligned_cols=384 Identities=13% Similarity=0.029 Sum_probs=218.3
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhh
Q 004425 287 VKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSC 363 (754)
Q Consensus 287 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 363 (754)
....+.-|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-....-.|+..+
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3344567888999999999999999999999998764 4557899999999999999999999988765543354443
Q ss_pred HHHHH-HHhc-ccCChHHHHHHHHHHHHh--CC--CcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004425 364 LATVI-DGCS-VCSNLELGLQLHGFAIKH--GY--LSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGF 437 (754)
Q Consensus 364 ~~~ll-~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 437 (754)
--.+. ..|. +.+.++++..+-.+++.. +. ......|-.+.-+|...-.. .+ ++. .
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~------------a~--~~s-e---- 455 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ------------AN--LKS-E---- 455 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc------------CC--ChH-H----
Confidence 33333 3343 347777777777776662 11 11223333333333321100 00 000 0
Q ss_pred hhhhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 004425 438 MEKIADDEEDVMVLFSQQRLAG-MEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSID 516 (754)
Q Consensus 438 ~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 516 (754)
+ .....++++.+++..+.+ -.|+...|.+ --++..++++.|.+...+..+.+-..+...|..|.-.+...+++.
T Consensus 456 -R--~~~h~kslqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 456 -R--DALHKKSLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred -H--HHHHHHHHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 0 111234455555554432 2233222222 224455566666666666666554556666666666666666666
Q ss_pred HHHHHHhccCCCChhHHH---HHHHHHHHcCChHHHHHHHHHHH---------------------HcCC-----CC-CH-
Q 004425 517 GAFQIFKGISDRDIVSWN---AMLSAYALHGLGKGALLLFEEMK---------------------REGF-----AP-DD- 565 (754)
Q Consensus 517 ~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~---------------------~~g~-----~p-~~- 565 (754)
+|+.+.+.....-...++ .-+..-..-|+.++|+.+...++ +.|+ .| |.
T Consensus 531 ~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 531 EALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 666666544321000000 00000111233333322221111 0010 11 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc--------cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 004425 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL--------EHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLL 635 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 635 (754)
.++..+..-.... ...+..-.. +.. ....|.. ..|....+.+.+.++.++|.-.+.+. ...| ....
T Consensus 611 s~sr~ls~l~a~~--~~~~~se~~-Lp~-s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~ 686 (799)
T KOG4162|consen 611 STSRYLSSLVASQ--LKSAGSELK-LPS-STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASV 686 (799)
T ss_pred hhhHHHHHHHHhh--hhhcccccc-cCc-ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHH
Confidence 2343333322211 111110000 222 2333433 24667888889999999998776654 3344 5667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHH--HHHHHhhCCC
Q 004425 636 WRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAK--VRTTMNDLRL 698 (754)
Q Consensus 636 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~ 698 (754)
|.-........|+.++|.+.|..++.++|++......++.++.+.|+-.-|.. +...+.+.+.
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 77777778889999999999999999999999999999999999998776666 7777765444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-09 Score=107.04 Aligned_cols=212 Identities=15% Similarity=0.026 Sum_probs=149.7
Q ss_pred cchHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHH
Q 004425 478 ACLVRGRSLHAYSIKTG-YAA--DVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALL 551 (754)
Q Consensus 478 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 551 (754)
+..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44556666666666432 222 245577778889999999999999988754 356789999999999999999999
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC--C
Q 004425 552 LFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--P 628 (754)
Q Consensus 552 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 628 (754)
.|++.++ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 66765 5778888888999999999999999865 3454332222233345677899999999654 2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh-------ccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 629 FSESPLLWRTLVSVSKLMANSKFSILASKRLL-------DLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 629 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
..|+ .|. ........|+...+ ..++.+. ++.|+.+.+|..+|.+|...|++++|...|++..+..+
T Consensus 195 ~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2233 333 12222335555443 2333333 45666778999999999999999999999998766443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-09 Score=99.94 Aligned_cols=225 Identities=11% Similarity=0.097 Sum_probs=131.5
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 004425 433 ILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKC 512 (754)
Q Consensus 433 li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 512 (754)
|...|.+ .|.+.+|.+.|+.-... .|-..||..|-++|.+......|+.++.+-++. ++.|+....-+...+...
T Consensus 229 ~gkCylr--Lgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 229 MGKCYLR--LGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHH--hcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 3344444 55555555555444443 333444444444444444444444444444332 122222223334444444
Q ss_pred CCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004425 513 GSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFN 589 (754)
Q Consensus 513 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 589 (754)
++.++|.++|+...+ .++.+.-.+..+|.-.++.+-|+.+|+++++.|+. +...|+.+.-+|.-.+.+|-++..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555554433 12223333444445555555555555555555543 34445555555555555555555554
Q ss_pred HHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 590 EIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSE--SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 590 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
+.... + ..| -..+|-.|.......||+..|.+.++-++.-+|++.
T Consensus 383 RAlst--------------------------------a-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST--------------------------------A-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh--------------------------------c-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 44331 1 112 256788888888888999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+++++|+-+-.+.|+.++|..+++..++.
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999999999987663
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-09 Score=94.96 Aligned_cols=161 Identities=14% Similarity=0.017 Sum_probs=139.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDL 610 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 610 (754)
...|.-+|...|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|++... +.| +.++.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 44577789999999999999999998 567664 888888899999999999999999865 445 46789999999
Q ss_pred HhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHH
Q 004425 611 LGRAGRLSEAMNLINSSPFSE----SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEA 686 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 686 (754)
+|..|++++|...|++.-..| -+.+|..+..+..+.|+.+.|...+++.++++|+.+.....+++.....|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999998764344 2668888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 004425 687 AKVRTTMNDLRL 698 (754)
Q Consensus 687 ~~~~~~m~~~~~ 698 (754)
...++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877665
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-09 Score=113.87 Aligned_cols=210 Identities=13% Similarity=0.052 Sum_probs=165.3
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCC
Q 004425 478 ACLVRGRSLHAYSIKTGYAADVIVGNALITMYAK---------CGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGL 545 (754)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 545 (754)
+++++|...++++.+.. +-+...+..+..+|.. .+++++|...+++..+ .+..+|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678999999988764 2345556666555442 3458999999998865 356788888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHhhcCCHHHHHHH
Q 004425 546 GKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL-EHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 546 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
+++|+..|++.++ +.|+. ..+..+..++...|++++|...++++.+ +.|+. ..+..++..+...|++++|++.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 56765 4778888899999999999999999966 45553 2333445567778999999999
Q ss_pred HHhCC--CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 624 INSSP--FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 624 ~~~~~--~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+++.. ..| ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98762 235 46667788888889999999999999999999998888889999999888 488887777654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.8e-08 Score=92.49 Aligned_cols=364 Identities=12% Similarity=0.036 Sum_probs=152.9
Q ss_pred HHHhHhcCCHhHHHHHhccCCCC---CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHH-HHHHHHhccCCc
Q 004425 201 ISMYFHSGCFREAENVFRGLAYK---DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFT-NVISVCYENLGV 276 (754)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~ 276 (754)
..+|.+.|++++|...+.-+.+. +...|--+.-.+.-.|.+.+|..+-... |+..... .|....-+.++-
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcH
Confidence 34455556666666655443322 2333333333344445555555443332 2222222 233333344555
Q ss_pred hHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC--CCchhHHH-HHHHHHhcCChhHHHHHHHHhH
Q 004425 277 EEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE--RNLISWTA-LISGYVRSGHGGKAINGFLEFL 353 (754)
Q Consensus 277 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~ 353 (754)
++-..++..+...- .---+|.......-.+.+|++++.++.. |+-...|. +.-+|.+..-++-+.+++.--+
T Consensus 138 k~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 138 KRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 55444444443221 1112333333334456777777777654 33344443 3335556666665555555444
Q ss_pred hcCcccCh-hhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhC-----CCHHHHHHHHhcCCCCCh
Q 004425 354 DLGICCDS-SCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKG-----GDLKSARMLLDGFSCKYT 427 (754)
Q Consensus 354 ~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~ 427 (754)
+. .||. ...|.......+.=+-..|++-.+.+.+.+-.. -..+.-.++. ..-+.|..++-.+...=+
T Consensus 213 ~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP 285 (557)
T KOG3785|consen 213 RQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP 285 (557)
T ss_pred Hh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhCh
Confidence 32 2332 222222222222211122222222222222111 0011111111 122334444332222212
Q ss_pred hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HhcccchHHHHHHHHHHHHhCCCCchhH-
Q 004425 428 AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSL-----SASQACLVRGRSLHAYSIKTGYAADVIV- 501 (754)
Q Consensus 428 ~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 501 (754)
..--.|+--|.+ .++..+|..+.+++.- ..|-......+..+ ..+...+.-|.+.++..-..+...|...
T Consensus 286 EARlNL~iYyL~--q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpG 361 (557)
T KOG3785|consen 286 EARLNLIIYYLN--QNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPG 361 (557)
T ss_pred Hhhhhheeeecc--cccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccc
Confidence 222334445666 7777777777665531 13333222222221 1222234445555555555544433322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHH
Q 004425 502 GNALITMYAKCGSIDGAFQIFKGISD----RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGV-LQACI 576 (754)
Q Consensus 502 ~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~ 576 (754)
-.++...+.-..++++.+..++.+.. .|...+| +..+++..|.+.+|.++|-+.....++ |..+|..+ ..+|.
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYI 439 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHH
Confidence 22333444444455555555555432 2333332 455566666666666666554433333 33333333 33455
Q ss_pred hcCCHHHHHHHH
Q 004425 577 YSGLSEGGICLF 588 (754)
Q Consensus 577 ~~g~~~~a~~~~ 588 (754)
+.+..+.|+.++
T Consensus 440 ~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 440 RNKKPQLAWDMM 451 (557)
T ss_pred hcCCchHHHHHH
Confidence 555555555554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-08 Score=98.18 Aligned_cols=193 Identities=13% Similarity=0.083 Sum_probs=106.1
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcC
Q 004425 468 SRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHG 544 (754)
Q Consensus 468 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 544 (754)
..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+...+...|
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 333344444444444444444444332 22334444555555555666666555554432 23345555566666666
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHH
Q 004425 545 LGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 545 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
++++|.+.+++..+....|. ...+..+..++...|++++|...+++.... .+.+...+..+...+...|++++|.+.
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666665322222 234555556666667777777777666541 222344566666677777777777766
Q ss_pred HHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 624 INSS-P-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 624 ~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
+++. . .+.++..+..+...+...|+.+.|....+.+.+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 192 LERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 6654 1 12245555566666667777777777766665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5e-08 Score=100.92 Aligned_cols=129 Identities=11% Similarity=0.066 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH---cCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---CC--CCC
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKR---EGFAPDD----ISILGVLQACIYSGLSEGGICLFNEIEQIY---GL--RPI 600 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~--~p~ 600 (754)
++.++..+...+++++|..+++...+ .-+.++. .+++.+...|.+.|++++|.++|+++.... +. .+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 44566666777777777777766553 1123333 367788888888888888888888776632 11 122
Q ss_pred -ccHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 601 -LEHFACMVDLLGRAGRLSEAMNLINSS--------PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 601 -~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
..+++.|...|.+.++..+|.++|.+. +..|+ ..++..|...|...|+++.|+++.+++..
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 346777888888888888887777643 34454 66888999999999999999999888773
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-06 Score=86.97 Aligned_cols=369 Identities=13% Similarity=0.101 Sum_probs=196.1
Q ss_pred HHhH--hcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHH
Q 004425 202 SMYF--HSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEG 279 (754)
Q Consensus 202 ~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 279 (754)
.+|| +.+..|+|...++...+.+..+...-...+-+.|++++|+++|+.+.+.+.. .+..-+++-+. ..+
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~----a~~ 156 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLL----AVA 156 (652)
T ss_pred HHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHH----HHH
Confidence 4444 5677888888887555555555555666777888888888888888766432 22222211100 000
Q ss_pred HHHH-HHHHHhcCCCChhHHHHHH---HHHHhcCChHHHHHHHHcc--------CCCCc----------hhHHHHHHHHH
Q 004425 280 KQLH-GLAVKFGVVREISVGNAIV---TMYGKHGMSEEAERMFDAI--------SERNL----------ISWTALISGYV 337 (754)
Q Consensus 280 ~~~~-~~~~~~g~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~--------~~~~~----------~~~~~li~~~~ 337 (754)
...- +.+......| ..+|..+. ..+...|++..|+++++.. .+.|. ..---|.-.+.
T Consensus 157 a~l~~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 157 AALQVQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HhhhHHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 0000 1122222222 22333333 3455678888888888776 11111 11122344567
Q ss_pred hcCChhHHHHHHHHhHhcCcccChh----hHHHHHHHhcccCChHH--HHHHHHHH-----------HHhCCCcchhHHH
Q 004425 338 RSGHGGKAINGFLEFLDLGICCDSS----CLATVIDGCSVCSNLEL--GLQLHGFA-----------IKHGYLSDVRLGT 400 (754)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~--a~~~~~~~-----------~~~g~~~~~~~~~ 400 (754)
..|+.++|..++...+.... +|.. .-|.++ +...-.++-. ....++.. ....-.-...--+
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998887642 3332 122222 2222222111 11111111 1111011112223
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCCC-hhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcc
Q 004425 401 ALVDIYAKGGDLKSARMLLDGFSCKY-TAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP--VTFSRLLSLSASQ 477 (754)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~ 477 (754)
.++.+| .+..+.++++....+... ...+..++....+.......++.+++...-+. .|.. ...-..+......
T Consensus 314 ~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 314 ALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhc
Confidence 344444 356667777777776443 34555555544432233567777777776654 3444 3444555667788
Q ss_pred cchHHHHHHHH--------HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC------CChh----HHHHHHHH
Q 004425 478 ACLVRGRSLHA--------YSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD------RDIV----SWNAMLSA 539 (754)
Q Consensus 478 ~~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~----~~~~li~~ 539 (754)
|+++.|.+++. .+.+.+.. +.+..+++..|.+.++-+.|..++.+... .... .|.-...-
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 88988888888 44444433 34456677778887777766666665421 1112 23333333
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFN 589 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 589 (754)
-.++|+.++|..+++++.+.. ++|..+...++.+|++. +++.|..+-+
T Consensus 468 ~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 445677777777777777621 23445666777777665 4555555543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-06 Score=90.29 Aligned_cols=493 Identities=15% Similarity=0.122 Sum_probs=290.6
Q ss_pred ccCChhHHHHHhccCC-CCC-hhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHH
Q 004425 105 KFNRLDVAQKLFDGML-VRS-AITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIH 182 (754)
Q Consensus 105 ~~~~~~~A~~~~~~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 182 (754)
..|+++.|..+++... .|+ ...|-.+...-...|+.--|.++|..+ |++.+++.++
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai----------------------~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI----------------------GDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH----------------------HHHHHHHHHH
Confidence 3466677766666542 233 234555555555666655555555443 5666666666
Q ss_pred HHHHH-------HC-CCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHC
Q 004425 183 AFAIK-------SG-FENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSS 254 (754)
Q Consensus 183 ~~m~~-------~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 254 (754)
+...- -| -..+-+-..+++..+. .++.+|..+|-+-. .-...|..|-...++++|+.+-+. .
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~---~ 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEA---K 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHh---c
Confidence 54432 12 2223333344444443 35777877774321 112334455555566666665432 1
Q ss_pred CCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHcc--CCCCchhHHHH
Q 004425 255 DFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAI--SERNLISWTAL 332 (754)
Q Consensus 255 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l 332 (754)
|.+.-...-.+-+.++...|+-++|-++- .+.----+-|..|.+.|.+..|.+.-..- ...|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 21111112233445555556555554331 11111234577888888888876654322 22455556666
Q ss_pred HHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhH-HHHHHHHHHhCCC
Q 004425 333 ISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRL-GTALVDIYAKGGD 411 (754)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~ 411 (754)
..++.+..-+++|-++|+++.. +...+..+.+..-+-+|.++-+.. ++..+.. -.....-+...|+
T Consensus 655 a~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHh
Confidence 6677777777777777776643 122233333333344444433322 1111111 1233344556677
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 004425 412 LKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSI 491 (754)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 491 (754)
++.|..-|-+... .---|.+-.. ...+.+|+.+++.++... .-..-|..+...|++.|+++.|.++|-+.-
T Consensus 722 ~daainhfiea~~-----~~kaieaai~--akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~ 792 (1636)
T KOG3616|consen 722 LDAAINHFIEANC-----LIKAIEAAIG--AKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD 792 (1636)
T ss_pred HHHHHHHHHHhhh-----HHHHHHHHhh--hhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc
Confidence 7777766643210 1112334455 788999999999888763 333456777888999999999999886542
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004425 492 KTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRD--IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISIL 569 (754)
Q Consensus 492 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 569 (754)
.++--|++|.+.|+|+.|.++-++...|. +..|-+-..-+-++|++.+|.++|-.... |+.
T Consensus 793 ---------~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~---- 855 (1636)
T KOG3616|consen 793 ---------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK---- 855 (1636)
T ss_pred ---------hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH----
Confidence 34567899999999999999988876553 44566666777889999999988765432 543
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 004425 570 GVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANS 649 (754)
Q Consensus 570 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 649 (754)
.|..|-+.|..+..+++.++--- ..-.++...+..-|...|++.+|++-|-+.+ -|.+-++.|+..+-+
T Consensus 856 -aiqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw 924 (1636)
T KOG3616|consen 856 -AIQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELW 924 (1636)
T ss_pred -HHHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhH
Confidence 46678888888888877765421 1113455677888889999999998876654 377788888888888
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 650 KFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 650 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
++|-++.+. ... .......+.+.+++=--+.|.+++.+.
T Consensus 925 ~dayriakt---egg--~n~~k~v~flwaksiggdaavkllnk~ 963 (1636)
T KOG3616|consen 925 EDAYRIAKT---EGG--ANAEKHVAFLWAKSIGGDAAVKLLNKH 963 (1636)
T ss_pred HHHHHHHhc---ccc--ccHHHHHHHHHHHhhCcHHHHHHHHhh
Confidence 877766542 122 233444555555554556788887764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.4e-06 Score=87.24 Aligned_cols=562 Identities=11% Similarity=0.069 Sum_probs=286.0
Q ss_pred hHHHHHHHHccCChhHHHHHhccCC--CCChhh-----HHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004425 96 ANNLINLYAKFNRLDVAQKLFDGML--VRSAIT-----WTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEA 168 (754)
Q Consensus 96 ~~~li~~~~~~~~~~~A~~~~~~~~--~~~~~~-----~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 168 (754)
+..+-+.|.+.|-...|++.+..+. ++.++. =..++ .|.-.-.++.+++++..|...+++-|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4556667778888888888887763 221111 11222 334445678889999999888887777666665555
Q ss_pred hccCCChHHHHHHHHHHHHH-----------CCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCC---------------
Q 004425 169 CSLLEDRIFGEQIHAFAIKS-----------GFENNVFVGTSLISMYFHSGCFREAENVFRGLAY--------------- 222 (754)
Q Consensus 169 ~~~~~~~~~a~~~~~~m~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------- 222 (754)
|...=-.+...++|+..+.. ++..|+.+.-..|.+.|+.|.+.+.+++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 54443344444444443321 3466777778889999999999998888765420
Q ss_pred ----C------------CcchH------HHHHHHHHHcCC----------------------------------------
Q 004425 223 ----K------------DVRCV------NFMILEYNKAGE---------------------------------------- 240 (754)
Q Consensus 223 ----~------------~~~~~------~~li~~~~~~g~---------------------------------------- 240 (754)
| |.+.| --.|..|++.=+
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 0 11111 012333333221
Q ss_pred ------hhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHH----------HHHHHHHH-----------hc---
Q 004425 241 ------SEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGK----------QLHGLAVK-----------FG--- 290 (754)
Q Consensus 241 ------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~----------~~~~~~~~-----------~g--- 290 (754)
..--+..++...+.|.. |..|+++|.+.|...++--+-. .+=+...+ +|
T Consensus 848 vEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 11122223333334443 5556666555544333211100 00000000 01
Q ss_pred -----CCCChhHHHHHHHHHHhcCChHHHHHHHHc-----------cC------CCCchhHHHHHHHHHhcCChhHHHHH
Q 004425 291 -----VVREISVGNAIVTMYGKHGMSEEAERMFDA-----------IS------ERNLISWTALISGYVRSGHGGKAING 348 (754)
Q Consensus 291 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----------~~------~~~~~~~~~li~~~~~~g~~~~A~~~ 348 (754)
+.-....|..+.+.+.+..+.+.-.+++.+ .. ..|...-+.-++++...+-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 001112223333333334444333333321 10 13445556667888888888888888
Q ss_pred HHHhHhcCcc--cChhhHHHHHHHhcccCChHHHHHHHHHHHHhC-----------------------CCcchhHHHHHH
Q 004425 349 FLEFLDLGIC--CDSSCLATVIDGCSVCSNLELGLQLHGFAIKHG-----------------------YLSDVRLGTALV 403 (754)
Q Consensus 349 ~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----------------------~~~~~~~~~~li 403 (754)
+++..-..-. -+...-+.++-...+ .+...+.+..+++-... +..+....+.|+
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLi 1085 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLI 1085 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHH
Confidence 8887533211 111111222211111 12222222222221111 111222222222
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHH
Q 004425 404 DIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRG 483 (754)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 483 (754)
. .-+.++.|.++-++.. ....|+.+..+-.+ .|...+|++-|-+. -|...|.-++..+.+.|.+++-
T Consensus 1086 e---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~--~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1086 E---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQ--GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred H---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHh--cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHH
Confidence 2 2234444444444433 33568899999888 88888888776432 3556788999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----------------------CChhHHHHHHHHH
Q 004425 484 RSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD-----------------------RDIVSWNAMLSAY 540 (754)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~ 540 (754)
..++..+++..-+|.+. +.|+-+|++.+++.+-+++...-.. .++..|..|...+
T Consensus 1153 v~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1153 VKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTL 1230 (1666)
T ss_pred HHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 99999888877666654 5788899999998887776543210 1223344444555
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHH
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 620 (754)
...|+++.|...-++. .+..||-.+-.+|...+.+.-| +|.. ..+....+-..-++..|...|.++|-
T Consensus 1231 V~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCG-L~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICG-LNIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcC-ceEEEehHhHHHHHHHHHhcCcHHHH
Confidence 5555555544433221 1334666666666655444332 1211 12222334455677777777777777
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 621 MNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 621 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
+.+++.. +.+. ....+.-|.-.|.+. +.++-.+.++-.+.. ...--+.++..+.--|.|..-++.+-
T Consensus 1299 Isl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1299 ISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777643 3332 233444444434333 233333333222211 00112334455555566666555544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-05 Score=83.62 Aligned_cols=479 Identities=13% Similarity=0.021 Sum_probs=222.5
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHH
Q 004425 165 ILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMA 244 (754)
Q Consensus 165 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 244 (754)
.|..|.+.|.+..|.++-.+. .|.......|-+-..-+-+.|++.+|.+++-.+..|+. .|..|-+.|..+..
T Consensus 797 ai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddm 869 (1636)
T KOG3616|consen 797 AIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDM 869 (1636)
T ss_pred HHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHH
Confidence 344444444444444432221 12222233333333334444444444444444444432 24444455555555
Q ss_pred HHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCC
Q 004425 245 FHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISER 324 (754)
Q Consensus 245 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 324 (754)
+++..+-... .-..|...+..-+-..|++..|+.-|-+.- -|.+-+++|-..+.+++|.++-+.-.-.
T Consensus 870 irlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~ 937 (1636)
T KOG3616|consen 870 IRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGA 937 (1636)
T ss_pred HHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccc
Confidence 5544432211 112345556666667778777776654432 2456677888888888888776543322
Q ss_pred Cc-----hhHHH-------------------HHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHH
Q 004425 325 NL-----ISWTA-------------------LISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELG 380 (754)
Q Consensus 325 ~~-----~~~~~-------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 380 (754)
|. ..|.. -|..-+.++.++-|.++-+-..+. -.|... ..+..-+-..|+++.|
T Consensus 938 n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~vh--lk~a~~ledegk~eda 1014 (1636)
T KOG3616|consen 938 NAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGEVH--LKLAMFLEDEGKFEDA 1014 (1636)
T ss_pred cHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCccch--hHHhhhhhhccchhhh
Confidence 21 11211 112223333333333333222211 111111 1111223455777777
Q ss_pred HHHHHHHHHhCC---C-----cchhH---------HHHHHHHHHhCCCHHHHHHHHhcCCCCChh--hHHHHHHHHhhhh
Q 004425 381 LQLHGFAIKHGY---L-----SDVRL---------GTALVDIYAKGGDLKSARMLLDGFSCKYTA--EFNAILSGFMEKI 441 (754)
Q Consensus 381 ~~~~~~~~~~g~---~-----~~~~~---------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~ 441 (754)
.+-+-+.++.+- . |+..- -..-+.++.+..+|..|.++-+.-. ++.. .+.--..+-..
T Consensus 1015 skhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~-~~~l~dv~tgqar~aie-- 1091 (1636)
T KOG3616|consen 1015 SKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC-EDLLADVLTGQARGAIE-- 1091 (1636)
T ss_pred hHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC-hhhhHHHHhhhhhcccc--
Confidence 666665554221 0 00000 0012234444444554444433211 1111 11111122222
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHH----------------HhCCCCchhHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSI----------------KTGYAADVIVGNAL 505 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------------~~~~~~~~~~~~~l 505 (754)
.|++.+|..++-+. -+|+. .++.+...+.+..|+++-+.-+ +.| ...+..+..-
T Consensus 1092 e~d~~kae~fllra----nkp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~g-argvd~fvaq 1161 (1636)
T KOG3616|consen 1092 EGDFLKAEGFLLRA----NKPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKG-ARGVDGFVAQ 1161 (1636)
T ss_pred ccchhhhhhheeec----CCCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcc-ccccHHHHHH
Confidence 45555554443222 25553 3444555566666655543221 122 1223344455
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC----Ch---hHHHHH--------------------HHHHHHcCChHHHHHHHHHHHH
Q 004425 506 ITMYAKCGSIDGAFQIFKGISDR----DI---VSWNAM--------------------LSAYALHGLGKGALLLFEEMKR 558 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~~----~~---~~~~~l--------------------i~~~~~~g~~~~A~~~~~~m~~ 558 (754)
..-+.+.|++..|...+-++... |. .+|.-- ..++-..|..+.|.+++--.-
T Consensus 1162 ak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~- 1240 (1636)
T KOG3616|consen 1162 AKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFD- 1240 (1636)
T ss_pred HHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhh-
Confidence 56677788888888877766321 11 111100 011111222222222221110
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------HHHhCCC---CCccHHHHHHHHHhhcCCHHHH
Q 004425 559 EGFAPDDISILGVLQACIYSGLSEGGICLFNEI---------------EQIYGLR---PILEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 559 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~---------------~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A 620 (754)
.-...|.++++...|.+|.++-++. .+.-|-- .++. .-.-++++...+++++|
T Consensus 1241 --------~~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vd-viaaidl~ien~qwdk~ 1311 (1636)
T KOG3616|consen 1241 --------LSKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVD-VIAAIDLMIENDQWDKA 1311 (1636)
T ss_pred --------hHHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchh-HHHHHHHHHhcccHHHH
Confidence 0123456777777777666554332 2211111 1122 23567889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHhhc-cCCCCcchHHHHHHH-HHhcC-CchHHHH
Q 004425 621 MNLINSSPFSESPLLWRTLVSVS-KLMANSKFSILASKRLLD-LEPKDAGSFILVSNM-YAGQG-MLDEAAK 688 (754)
Q Consensus 621 ~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~-~~~~g-~~~~a~~ 688 (754)
++--.+-..+|-..-|-++-.+. ...|+...+..++++--. .+|.|...|..+..- +++-| +.++|-.
T Consensus 1312 idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lakpgt~~~eay~ 1383 (1636)
T KOG3616|consen 1312 IDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAKPGTNCAEAYH 1383 (1636)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcCCCcchHHHHH
Confidence 99988877777555555555444 455899999998877544 577777777765543 33333 4555543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-08 Score=97.36 Aligned_cols=233 Identities=11% Similarity=-0.054 Sum_probs=164.9
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAG-MEPDP--VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGA 518 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g-~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 518 (754)
.+..+.++..+.+++... ..|+. ..|..+...+...|+.+.|...++.+.+.. +.+...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 556677777777777532 23332 456666777888999999999999988865 45678899999999999999999
Q ss_pred HHHHhccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004425 519 FQIFKGISD--R-DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIY 595 (754)
Q Consensus 519 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 595 (754)
...|+...+ | +..+|..+..++...|++++|++.|++..+ ..|+..........+...++.++|...|++...
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 999998854 4 456888899999999999999999999998 567654322223334567789999999977654
Q ss_pred CCCCCccHHHHHHHHHhhcCCH--HHHHHHHHh-CCC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-CC
Q 004425 596 GLRPILEHFACMVDLLGRAGRL--SEAMNLINS-SPF----SE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEP-KD 666 (754)
Q Consensus 596 ~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~-~~~----~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~ 666 (754)
...|+...+ .++..+ .|+. +++.+.+.+ ... .| ....|..+...+...|+.++|+..|+++++.+| +.
T Consensus 194 ~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 194 KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 334443222 333333 4444 333433332 111 12 356899999999999999999999999999997 44
Q ss_pred cchHHHHHHHHHhcCC
Q 004425 667 AGSFILVSNMYAGQGM 682 (754)
Q Consensus 667 ~~~~~~l~~~~~~~g~ 682 (754)
.++-..+..+....++
T Consensus 271 ~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 271 VEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5555555555444333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-06 Score=82.80 Aligned_cols=403 Identities=11% Similarity=0.001 Sum_probs=241.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHccCCC-CchhHHHHHHHHHhcC-ChhHHHHHHHHhHhcCcccChhhHHHHHHHhccc
Q 004425 297 VGNAIVTMYGKHGMSEEAERMFDAISER-NLISWTALISGYVRSG-HGGKAINGFLEFLDLGICCDSSCLATVIDGCSVC 374 (754)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 374 (754)
.-.-.+..|-..++-+.|.....+.+.. ...--|.|+.-+.+.| +-.++.--+.+.+..-+ .. ...|.+..+.
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp----~a-L~~i~~ll~l 173 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP----MA-LQVIEALLEL 173 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc----hH-HHHHHHHHHH
Confidence 3344556677778888888888877753 3333444444444433 22222222222211100 00 0000010000
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh--CCCHHHHHHHHhcC-----CCCChhhHHHHHHHHhhhhcCCHHH
Q 004425 375 SNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAK--GGDLKSARMLLDGF-----SCKYTAEFNAILSGFMEKIADDEED 447 (754)
Q Consensus 375 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~~~ 447 (754)
+ +..+..--..|-...+.+........+.++.. .++...|...+-.. .+.|+.....+...+.. .|+..+
T Consensus 174 ~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~--~Gdn~~ 250 (564)
T KOG1174|consen 174 G-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYY--NGDYFQ 250 (564)
T ss_pred h-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhh--hcCchH
Confidence 0 00000111112222233444444444444433 34444443333222 24566777888888888 999999
Q ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 004425 448 VMVLFSQQRLAGMEPDPVT-FSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS 526 (754)
Q Consensus 448 A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 526 (754)
|...|++.+.. .|+..+ .-...-.+...|+++....+...+.... .-+..-|-.-.......++++.|+.+-++..
T Consensus 251 a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 251 AEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred HHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 99999888754 555432 1112223356677777777776665432 1111112222223344567888888888776
Q ss_pred CC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcc
Q 004425 527 DR---DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILE 602 (754)
Q Consensus 527 ~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 602 (754)
+- ++..|-.-...+...|+.++|.-.|+.... +.|. -..|..|+.+|...|...+|.-.-..... -++.+..
T Consensus 328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~ 403 (564)
T KOG1174|consen 328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSAR 403 (564)
T ss_pred ccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchh
Confidence 53 344444444677888999999999998887 6664 46899999999999999998877776655 3344455
Q ss_pred HHHHHH-HHHhh-cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 603 HFACMV-DLLGR-AGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 603 ~~~~l~-~~~~~-~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
+...+. ..+.- -.--++|.+++++. ...|+ ....+.+...|...|..+.++.++++.+...|+ ...+..|++++.
T Consensus 404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMR 482 (564)
T ss_pred hhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHH
Confidence 555442 33322 22347899999865 66776 667778888899999999999999999999998 568889999999
Q ss_pred hcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 004425 679 GQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMK 741 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 741 (754)
..+.+.+|.+.|...... .|+.+.-...|..+.++|+
T Consensus 483 A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHhccC
Confidence 999999999999876442 4555556666666666665
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8e-07 Score=83.82 Aligned_cols=179 Identities=15% Similarity=0.126 Sum_probs=97.6
Q ss_pred HHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 004425 65 VKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLV---RSAITWTSLIKGYLDDGDYE 141 (754)
Q Consensus 65 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 141 (754)
|.-+...+++..|..+++.-...+-+-...+--=+-.++-+.|++++|..++..+.+ ++...|-.|.-++.--|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 444455677777777777655443222222222234455677888888888776533 34455555655555667777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHH-HHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccC
Q 004425 142 SVLGIACDMYRSEEKFNEHTCSVI-LEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGL 220 (754)
Q Consensus 142 ~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 220 (754)
+|..+-.... +.....-+ +...-+.++-+.-..+++.+... ..-.-+|.+..-..-.+.+|++++.++
T Consensus 109 eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 109 EAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7776655542 33333333 33344556666666665554322 122233334333344677777777776
Q ss_pred CCC--CcchHHHHH-HHHHHcCChhHHHHHHHHhHHC
Q 004425 221 AYK--DVRCVNFMI-LEYNKAGESEMAFHVFVHLLSS 254 (754)
Q Consensus 221 ~~~--~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~ 254 (754)
... +-...|.-+ -+|.+..-++-+.++++-..+.
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 543 333444433 3455666666666666665554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-06 Score=82.24 Aligned_cols=314 Identities=14% Similarity=0.097 Sum_probs=173.4
Q ss_pred HHHHHHhcCChHHHHHHHHccCCCCchhHHHHH---HHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCCh
Q 004425 301 IVTMYGKHGMSEEAERMFDAISERNLISWTALI---SGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNL 377 (754)
Q Consensus 301 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 377 (754)
|-+.+...|++.+|+.-|....+-|...|-++. ..|...|+...|+.-+.+.++. +||-..-..
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi----------- 110 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI----------- 110 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH-----------
Confidence 334455566677777777666666665555543 3566666666666666655542 444321110
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 004425 378 ELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRL 457 (754)
Q Consensus 378 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~ 457 (754)
.-...+.+.|.++.|..-|+.+...++. +|...+|.+-+....+
T Consensus 111 -----------------------QRg~vllK~Gele~A~~DF~~vl~~~~s-------------~~~~~eaqskl~~~~e 154 (504)
T KOG0624|consen 111 -----------------------QRGVVLLKQGELEQAEADFDQVLQHEPS-------------NGLVLEAQSKLALIQE 154 (504)
T ss_pred -----------------------HhchhhhhcccHHHHHHHHHHHHhcCCC-------------cchhHHHHHHHHhHHH
Confidence 0112244555566665555554422110 1111122111111100
Q ss_pred cCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCChhHHH
Q 004425 458 AGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGI---SDRDIVSWN 534 (754)
Q Consensus 458 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~ 534 (754)
.......+..+...|+...+......+++.. +.|...+..-..+|...|++..|+.=++.. ...+..+.-
T Consensus 155 ------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y 227 (504)
T KOG0624|consen 155 ------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY 227 (504)
T ss_pred ------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH
Confidence 0112233344455677777777777777653 567777888888899999999888766554 345666666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc
Q 004425 535 AMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA 614 (754)
Q Consensus 535 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 614 (754)
-+-..+...|+.+.++...++.++ +.||...... .-+.+.+..+.++.|.+ ..+.
T Consensus 228 kis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~------~YKklkKv~K~les~e~-----------------~ie~ 282 (504)
T KOG0624|consen 228 KISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFP------FYKKLKKVVKSLESAEQ-----------------AIEE 282 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHH------HHHHHHHHHHHHHHHHH-----------------HHhh
Confidence 677778888999999999999888 7788752111 11122333333333333 1233
Q ss_pred CCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 004425 615 GRLSEAMNLINSS-PFSES-----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 615 g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 688 (754)
++|.++++-.++. ...|. ...+..+-.+++..|++.+|++...++++++|+|..++...+.+|.-...+++|+.
T Consensus 283 ~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 283 KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4444444444322 22232 11223333444555667777777777777777777777777777777777777777
Q ss_pred HHHHHhh
Q 004425 689 VRTTMND 695 (754)
Q Consensus 689 ~~~~m~~ 695 (754)
-|++..+
T Consensus 363 dye~A~e 369 (504)
T KOG0624|consen 363 DYEKALE 369 (504)
T ss_pred HHHHHHh
Confidence 6666554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.5e-06 Score=86.66 Aligned_cols=428 Identities=13% Similarity=0.067 Sum_probs=230.4
Q ss_pred HHHHHcCChhHHHHHHHHhHHCCCCCCcch-HHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC--
Q 004425 233 LEYNKAGESEMAFHVFVHLLSSDFEPNDYT-FTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHG-- 309 (754)
Q Consensus 233 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-- 309 (754)
..+...|++++|++.+..-.. ..+|..+ +......+.+.|+.++|..++..+++.+ +.+...|..|..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 455778888888888876433 2345444 4455566777888888888888888775 344555555555542222
Q ss_pred ---ChHHHHHHHHccCC--CCchhHHHHHHHHHhcCChh-HHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHH
Q 004425 310 ---MSEEAERMFDAISE--RNLISWTALISGYVRSGHGG-KAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQL 383 (754)
Q Consensus 310 ---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 383 (754)
..+...++++++.. |...+..-+.-.+.....+. .+...+..+..+|+++ +|+.+-.-|..........++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 34444555555433 21111111111111111121 2233344444444432 222222222222222222222
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHH--HHHHhhhhcCCHHHHHHHHHHHHHcCCC
Q 004425 384 HGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAI--LSGFMEKIADDEEDVMVLFSQQRLAGME 461 (754)
Q Consensus 384 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~~~A~~~~~~m~~~g~~ 461 (754)
+......- ...|.+.... =..-..|....|... ...|-. .|++++|++++++.++. .
T Consensus 166 ~~~~~~~l---------------~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~--~g~~~~Al~~Id~aI~h--t 224 (517)
T PF12569_consen 166 VEEYVNSL---------------ESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDY--LGDYEKALEYIDKAIEH--T 224 (517)
T ss_pred HHHHHHhh---------------cccCCCCCcc--ccccCCchHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhc--C
Confidence 22221100 0000000000 000012333345444 345556 89999999999998877 6
Q ss_pred CCH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCh----------
Q 004425 462 PDP-VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDI---------- 530 (754)
Q Consensus 462 p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------- 530 (754)
|+. ..|..-.+.+-+.|++.+|.+..+.++... .-|..+-+-.+..+.++|++++|.+++.....++.
T Consensus 225 Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 225 PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 774 567777888999999999999999998876 34777777788899999999999999988876542
Q ss_pred hHHH--HHHHHHHHcCChHHHHHHHHHHHHc--CCCCCH-------------HHHHHHHHHHHhcC---C----HHHHHH
Q 004425 531 VSWN--AMLSAYALHGLGKGALLLFEEMKRE--GFAPDD-------------ISILGVLQACIYSG---L----SEGGIC 586 (754)
Q Consensus 531 ~~~~--~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~-------------~t~~~ll~a~~~~g---~----~~~a~~ 586 (754)
..|- .-..+|.+.|++..|++-|....+. .+.-|. .+|..++...-+.. . ...|++
T Consensus 304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~ 383 (517)
T PF12569_consen 304 CMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIR 383 (517)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 1343 3567889999999998877766542 122222 23333333222111 1 122444
Q ss_pred HHHHHHHHhCCCCCccH-----------HHHHHHHH---hhcCCHHHHHHHHH-----------hC------CCCCCHHH
Q 004425 587 LFNEIEQIYGLRPILEH-----------FACMVDLL---GRAGRLSEAMNLIN-----------SS------PFSESPLL 635 (754)
Q Consensus 587 ~~~~~~~~~~~~p~~~~-----------~~~l~~~~---~~~g~~~~A~~~~~-----------~~------~~~p~~~~ 635 (754)
+|-.+-........... -.-+..-. .+...-+++...-. +. +..+|+..
T Consensus 384 iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G 463 (517)
T PF12569_consen 384 IYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG 463 (517)
T ss_pred HHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH
Confidence 44444331000000000 00011100 11111111111110 00 12223322
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 636 WRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 636 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
-. |+ ....=+++|.+.++-+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 464 ek-L~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 464 EK-LL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HH-Hh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 11 11 2334578899999999999999999999999999999999999888764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-05 Score=80.85 Aligned_cols=440 Identities=12% Similarity=0.032 Sum_probs=238.9
Q ss_pred CCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC---CcchHHHHHHHHHHcCChhHHHHHH
Q 004425 172 LEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYK---DVRCVNFMILEYNKAGESEMAFHVF 248 (754)
Q Consensus 172 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 248 (754)
.+++..+.++.+.+.+ +++....+....--.+...|+-++|....+.-... +.++|..+.-.+-...++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3455555666655555 33333333333333345567778887777655443 4557777777777777888888888
Q ss_pred HHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CC
Q 004425 249 VHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RN 325 (754)
Q Consensus 249 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~ 325 (754)
...... .||.. .++.-|.-.-+..|+++..........+ ..
T Consensus 99 ~nAl~~--~~dN~----------------------------------qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 99 RNALKI--EKDNL----------------------------------QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHhc--CCCcH----------------------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 776654 23322 1111111111222333333332222222 23
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHhHhcC-cccChhhHHHHHH------HhcccCChHHHHHHHHHHHHhCCCcchhH
Q 004425 326 LISWTALISGYVRSGHGGKAINGFLEFLDLG-ICCDSSCLATVID------GCSVCSNLELGLQLHGFAIKHGYLSDVRL 398 (754)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 398 (754)
...|..+..++.-.|+...|..++++..+.. -.|+...|..... .....|..+.|.+.+..-... +......
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~ 221 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAF 221 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHH
Confidence 4567777777777777777777777776554 2455554443322 234456666666555443321 1222233
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCC--CChhhHHHHH-HHHhhhhcCCHHHHH-HHHHHHHHcCCCCCHHH-HHHHHHH
Q 004425 399 GTALVDIYAKGGDLKSARMLLDGFSC--KYTAEFNAIL-SGFMEKIADDEEDVM-VLFSQQRLAGMEPDPVT-FSRLLSL 473 (754)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~~~~~~~~A~-~~~~~m~~~g~~p~~~~-~~~ll~~ 473 (754)
-..-.+.+.+.+++++|..++..+.. ||...|.-.+ .++.+ -.+.-+++ .+|....+. .|.... -..=++.
T Consensus 222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk--~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsv 297 (700)
T KOG1156|consen 222 EETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGK--IKDMLEALKALYAILSEK--YPRHECPRRLPLSV 297 (700)
T ss_pred hhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhc--CcccccchhccHHH
Confidence 34455667788888888888888764 3444444333 33333 23333333 566555443 111110 0111111
Q ss_pred HhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH---H-HHHHHhcc--------------CCCChhHHHH
Q 004425 474 SASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSID---G-AFQIFKGI--------------SDRDIVSWNA 535 (754)
Q Consensus 474 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~-A~~~~~~~--------------~~~~~~~~~~ 535 (754)
.....-.+....++....+.|+++-. ..+...|-.-...+ + +..+...+ ..|....|+.
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 22222233445566666677765432 33333332211111 1 11111111 1244555654
Q ss_pred --HHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHh
Q 004425 536 --MLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLG 612 (754)
Q Consensus 536 --li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 612 (754)
++..|-..|+++.|+.+++..+. -.|+.+ -|..=.+.+.++|++++|..++++..+ --.||...=+--+.-..
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHH
Confidence 67788899999999999999887 456654 455556788999999999999999866 23344443335666778
Q ss_pred hcCCHHHHHHHHHhCCCCC-C--------HHHHHHH--HHHHHhcCChHHHHHHHHHhh
Q 004425 613 RAGRLSEAMNLINSSPFSE-S--------PLLWRTL--VSVSKLMANSKFSILASKRLL 660 (754)
Q Consensus 613 ~~g~~~~A~~~~~~~~~~p-~--------~~~~~~l--~~~~~~~g~~~~a~~~~~~~~ 660 (754)
++.+.++|.++.....-.. + .-.|-.+ +.+|.+.|++.+|.+-+..+.
T Consensus 451 rAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 8999999998876552111 1 1234333 356777788877776654443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.4e-08 Score=89.64 Aligned_cols=224 Identities=13% Similarity=0.040 Sum_probs=174.6
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhcCC--CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHH
Q 004425 397 RLGTALVDIYAKGGDLKSARMLLDGFS--CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTF-SRLLSL 473 (754)
Q Consensus 397 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~ 473 (754)
.--+-+..+|.+.|.+.+|++.|+.-. .+-+.+|-.|-..|.+ -.+++.|+.+|.+-.+. .|-.+|| ..+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~r--idQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQR--IDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHH--hccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 334678889999999999999998765 5667788888889999 99999999999998875 6777666 456677
Q ss_pred HhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHH
Q 004425 474 SASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGAL 550 (754)
Q Consensus 474 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 550 (754)
+...++.+.+.++++...+.. +.++....++...|.-.++++-|++.|+++.+ .+...|+.+.-+|.-.++++-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 888899999999999998864 45666666777788888999999999998765 56678888888888899999999
Q ss_pred HHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 551 LLFEEMKREGFAPDDI--SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 551 ~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
..|++.+..--.|+.. .|-.+.......|+...|.+.|+-... .-.-..+.++.|.-+-.+.|++++|..+++..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999988765556553 566677777777888888888877754 23334556677766667777777777777654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.7e-05 Score=80.05 Aligned_cols=149 Identities=11% Similarity=0.039 Sum_probs=98.4
Q ss_pred CChhhhHHHHH--HHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHhC-C-------C-CCCh
Q 004425 91 NDTFEANNLIN--LYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRS-E-------E-KFNE 159 (754)
Q Consensus 91 ~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-------~-~p~~ 159 (754)
-|..+-.++++ .|..-|+.+.|.+-.+.+. +-..|..|.+.|++..+.+-|.-++-.|... | . .|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 45566666665 4667799999888776654 4567999999999999999888888877532 1 1 121
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCC-cchHHHHHHHHHHc
Q 004425 160 HTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKD-VRCVNFMILEYNKA 238 (754)
Q Consensus 160 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~ 238 (754)
.+=.-+.-.....|.+++|+.+|.+-++.. .|=..|-..|.+++|.++-+.-.+-. ..||.--...+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 111122222335678888888888776543 34456777899999988876433221 22565566666677
Q ss_pred CChhHHHHHHHHh
Q 004425 239 GESEMAFHVFVHL 251 (754)
Q Consensus 239 g~~~~A~~~~~~m 251 (754)
++.+.|++.|++-
T Consensus 872 ~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 872 RDIEAALEYYEKA 884 (1416)
T ss_pred ccHHHHHHHHHhc
Confidence 8888888888753
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-05 Score=81.80 Aligned_cols=413 Identities=10% Similarity=0.027 Sum_probs=230.0
Q ss_pred HcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHH
Q 004425 237 KAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAER 316 (754)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 316 (754)
..+++...+++.+.+.+. ..--..|....--.++..|+.++|........+.. .-+.+.|..+.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 445666667766666653 21122333333333456778888877766655532 3355667777766777788899999
Q ss_pred HHHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccC-hhhHHHHHHHhcccCChHHHHHHHHHHHHhC-
Q 004425 317 MFDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCD-SSCLATVIDGCSVCSNLELGLQLHGFAIKHG- 391 (754)
Q Consensus 317 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g- 391 (754)
.|..... .|...|.-+----.+.++++.....-.+..+. .|+ ...|..+..+..-.|+...|..+.+...+..
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8887653 35566666655556777777777776666654 333 3456666677777888888888888887754
Q ss_pred CCcchhHHHHHH------HHHHhCCCHHHHHHHHhcCCCC--ChhhH-HHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 004425 392 YLSDVRLGTALV------DIYAKGGDLKSARMLLDGFSCK--YTAEF-NAILSGFMEKIADDEEDVMVLFSQQRLAGMEP 462 (754)
Q Consensus 392 ~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~~~~-~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p 462 (754)
-.|+...+.-.. ....+.|..+.|.+.+...... |-..+ ..-..-+.+ .++.++|..++..++.. .|
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~k--l~~lEeA~~~y~~Ll~r--nP 250 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMK--LGQLEEAVKVYRRLLER--NP 250 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHH--HhhHHhHHHHHHHHHhh--Cc
Confidence 244444443222 2234456666666555444321 11111 111223333 55666666666666554 45
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhccCC-------CChhHHH
Q 004425 463 DPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAF-QIFKGISD-------RDIVSWN 534 (754)
Q Consensus 463 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~-------~~~~~~~ 534 (754)
|..-|.-.+.. ++++-.+.-++. .+|....+ |--...+
T Consensus 251 dn~~Yy~~l~~----------------------------------~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls 296 (700)
T KOG1156|consen 251 DNLDYYEGLEK----------------------------------ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS 296 (700)
T ss_pred hhHHHHHHHHH----------------------------------HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH
Confidence 55444333322 222211222222 33333321 1111111
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHh-------C--CCCCc
Q 004425 535 AMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEG----GICLFNEIEQIY-------G--LRPIL 601 (754)
Q Consensus 535 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~-------~--~~p~~ 601 (754)
.+. ...-.+..-+++..+++.|+++--.. +.+.+-.-...+- +..+...+.... + -+|+.
T Consensus 297 vl~----~eel~~~vdkyL~~~l~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt 369 (700)
T KOG1156|consen 297 VLN----GEELKEIVDKYLRPLLSKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT 369 (700)
T ss_pred HhC----cchhHHHHHHHHHHHhhcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence 111 01122333445666667776653333 2222222211111 111111111100 0 13443
Q ss_pred c--HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 602 E--HFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 602 ~--~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
. ++..++..+-+.|+++.|..+++.. ...|. +..|..-.+.+...|+++.|...++++.+++-.|-..-..-+.-.
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 3 4457888888899999999998855 55565 445555567777788999999999999998877665555677778
Q ss_pred HhcCCchHHHHHHHHHhhCCC
Q 004425 678 AGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 678 ~~~g~~~~a~~~~~~m~~~~~ 698 (754)
.++.+.++|.++..+....|.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHccccHHHHHHHHHhhhccc
Confidence 888899999998888866554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-05 Score=84.33 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=62.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCcccC-hhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCC
Q 004425 332 LISGYVRSGHGGKAINGFLEFLDLGICCD-SSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGG 410 (754)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 410 (754)
+...|-..|++++|++..++.++. .|+ ...|..-...+-+.|++.+|.+.++...... .-|..+-+..+..+.++|
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCC
Confidence 344455555555555555555543 333 2334444444555555555555555555433 234444455555566666
Q ss_pred CHHHHHHHHhcCCCCChh----------hHH--HHHHHHhhhhcCCHHHHHHHHHHHHH
Q 004425 411 DLKSARMLLDGFSCKYTA----------EFN--AILSGFMEKIADDEEDVMVLFSQQRL 457 (754)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~----------~~~--~li~~~~~~~~~~~~~A~~~~~~m~~ 457 (754)
++++|.+++......+.. .|- ....+|.+ .|++..|++.|....+
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r--~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR--QGDYGLALKRFHAVLK 333 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHH
Confidence 666666666555433211 121 22345666 6777777666655544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.6e-07 Score=79.07 Aligned_cols=195 Identities=12% Similarity=0.032 Sum_probs=111.7
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCC
Q 004425 469 RLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGL 545 (754)
Q Consensus 469 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 545 (754)
-+.-+|...|+...|+.-++++++.. +.+..++..+...|.+.|+.+.|.+.|++..+ .+-...|....-+|..|+
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 34445555555555555555555543 33445555666666666666666666665532 233455555555666666
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHH
Q 004425 546 GKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 546 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
+++|...|++....-.-|. ..||..+.-+..+.|+.+.|..+|++..+ ..|+ ......+.....+.|++-+|..+
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 6666666666664322222 23666666666666666666666666654 2232 34555666666667777777666
Q ss_pred HHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 624 INSS--PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 624 ~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
++.. ...+...+....+..-...||.+.+.+.-.++....|...
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 6654 2224444444445555566777666666666666666643
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-05 Score=79.45 Aligned_cols=408 Identities=11% Similarity=0.043 Sum_probs=206.8
Q ss_pred HHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC--CCc-hhHHHHHHHHHhcCChhH
Q 004425 268 SVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE--RNL-ISWTALISGYVRSGHGGK 344 (754)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~ 344 (754)
++.+..|+++.|...|-+.+... ++|.+.|+.-..+|.+.|++++|.+=-.+-.+ |+. ..|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45677899999999998887765 34888888888899999999888766555443 432 468888888888899999
Q ss_pred HHHHHHHhHhcCcccChhhHHHHHHHhccc---CChHHHHHHHHHHHHhCC---CcchhHHHHHHHHHH----------h
Q 004425 345 AINGFLEFLDLGICCDSSCLATVIDGCSVC---SNLELGLQLHGFAIKHGY---LSDVRLGTALVDIYA----------K 408 (754)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~----------~ 408 (754)
|+.-|.+-++.. +-+...++.+..++... ++.-..-.++..+...-. ......|..++..+- .
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999988876641 22345566666665111 000000011111111000 000111222222111 1
Q ss_pred CCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHH----HHHHHHHHHHH-cCCCCCHHHHHHHHHHHhcccchHHH
Q 004425 409 GGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEE----DVMVLFSQQRL-AGMEPDPVTFSRLLSLSASQACLVRG 483 (754)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~----~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a 483 (754)
-.++..+.-.+......-...-..++.. . ...+. .......++.+ ....--..-...+.++..+..++..+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~--~--~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILA--S--MAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCC--C--CCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 1111122111111100000000000000 0 00000 00000000000 00000112234455555566666666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChh----------HHHHHHHHHHHcCChHHHHHHH
Q 004425 484 RSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIV----------SWNAMLSAYALHGLGKGALLLF 553 (754)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~A~~~~ 553 (754)
.+-+....+.. -++.-++....+|...|.+.++...-+...+.+.. +...+..+|.+.++++.|+..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 66666666554 34444455556666666666555555443332111 1222344566667777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccH-HHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 004425 554 EEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEH-FACMVDLLGRAGRLSEAMNLINSS-PFSE 631 (754)
Q Consensus 554 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 631 (754)
++.+.....||..+ +....+++....+.. .-+.|.... ...=...+.+.|++.+|++.+.++ ...|
T Consensus 322 ~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDLLS---------KLKEAEKALKEAERK---AYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred HHHhhhhcCHHHHH---------HHHHHHHHHHHHHHH---HhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 77665444444322 122233333333332 123333211 111245556677777777777654 2234
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 632 -SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 632 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
|...|.....++...|++..|+.-.+..++++|+....|..-+-++....+|++|.+.|++..+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777777777777777777777777777777777777777777777777777777766544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.3e-08 Score=97.09 Aligned_cols=217 Identities=16% Similarity=0.128 Sum_probs=152.4
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 004425 476 SQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLL 552 (754)
Q Consensus 476 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 552 (754)
+.|++.+|.-.|+..++.. +-+...|.-|...-...++-..|+..+++..+ .|....-.|...|...|.-.+|+.+
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444555555555555443 33455555565556666666666666666544 3445566666777777888888888
Q ss_pred HHHHHHcCCCCCHHHHHHH--------HHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHH
Q 004425 553 FEEMKREGFAPDDISILGV--------LQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLI 624 (754)
Q Consensus 553 ~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 624 (754)
++.-+... |...-...- -....+........++|-.+....+..+|.+++.+|.-+|.-.|.+++|.+.|
T Consensus 376 L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 87776532 111100000 00111122233445555555554576688889999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 625 NSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 625 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+.. ..+| |...||-|...+....+.++|+.+|.+++++.|....+.+.|+-.|...|.++||.+.+-....
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 965 6667 7999999999999999999999999999999999999999999999999999999998776644
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=0.0003 Score=76.07 Aligned_cols=157 Identities=13% Similarity=0.050 Sum_probs=99.7
Q ss_pred hhHHHHHHHHccCChhHHHHHhccCCCC---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHH--HHh
Q 004425 95 EANNLINLYAKFNRLDVAQKLFDGMLVR---SAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVIL--EAC 169 (754)
Q Consensus 95 ~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll--~~~ 169 (754)
.|..|-..|....+...|.+.|+...+- +..++......|++..+++.|..+.-..-+.. +.-...++.+- -.+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccc
Confidence 5677777777777888888888876443 56678888888999999988888733222111 00111122222 223
Q ss_pred ccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHH-H--HHHHHHcCChhHHHH
Q 004425 170 SLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNF-M--ILEYNKAGESEMAFH 246 (754)
Q Consensus 170 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l--i~~~~~~g~~~~A~~ 246 (754)
-..++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|.+...-+..++-. . .-.-+..|++++|++
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 35566666666666555443 4467788888889999999999999987766543333222 1 223456788888888
Q ss_pred HHHHhHH
Q 004425 247 VFVHLLS 253 (754)
Q Consensus 247 ~~~~m~~ 253 (754)
.+.....
T Consensus 652 ~l~~ii~ 658 (1238)
T KOG1127|consen 652 ALGLIIY 658 (1238)
T ss_pred HHHHHHH
Confidence 8777653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-05 Score=84.00 Aligned_cols=551 Identities=10% Similarity=-0.018 Sum_probs=296.3
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCC-cH--HHHHHHH
Q 004425 125 ITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFEN-NV--FVGTSLI 201 (754)
Q Consensus 125 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~--~~~~~li 201 (754)
..|..|-..|....+...|.++|+...+.... |......+.+.+++..+++.|..+. +......| -. .-|-.+-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~--l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEIC--LRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHH--HHHhhhchHHHHHhhhhhcc
Confidence 45667777777777778888888887665422 5556677778888888888888772 22111111 11 1122223
Q ss_pred HHhHhcCCHhHHHHHhccCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHH--HHHhccCCc
Q 004425 202 SMYFHSGCFREAENVFRGLAY---KDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVI--SVCYENLGV 276 (754)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--~~~~~~~~~ 276 (754)
-.|.+.++...|..-|+...+ .|...|..+..+|.+.|++..|+++|.+.... .|+. +|...- ..-|..|.+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence 345667778888888876553 36778888999999999999999999887653 4443 232222 223567888
Q ss_pred hHHHHHHHHHHHhc------CCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHH-HHHHhcC-C---hhHH
Q 004425 277 EEGKQLHGLAVKFG------VVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALI-SGYVRSG-H---GGKA 345 (754)
Q Consensus 277 ~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li-~~~~~~g-~---~~~A 345 (754)
.++...+...+..- ...-..++-.+...+.-.|-..+|...|+.-. ..+...+ ...+... . ...|
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHhhhhhHHHHHHHhHH
Confidence 88888877765431 11112222222222333333334444443321 1111111 1101000 0 1123
Q ss_pred HHHHHHhHhcCcccChhhHHHHHHHhcccCCh---H---HHHHHHHHHHHhCCCcchhHHHHHHHHHHh----CC----C
Q 004425 346 INGFLEFLDLGICCDSSCLATVIDGCSVCSNL---E---LGLQLHGFAIKHGYLSDVRLGTALVDIYAK----GG----D 411 (754)
Q Consensus 346 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g----~ 411 (754)
..+|.+.. -. .|+......+..-....+.. + .|.+.+-.- ..+..+...+..|+..|.+ +| +
T Consensus 723 c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h--lsl~~~~~~WyNLGinylr~f~~l~et~~~ 798 (1238)
T KOG1127|consen 723 CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH--LSLAIHMYPWYNLGINYLRYFLLLGETMKD 798 (1238)
T ss_pred HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH--HHHhhccchHHHHhHHHHHHHHHcCCcchh
Confidence 33333332 11 22222222222212222221 1 111111111 1112223333333333322 22 2
Q ss_pred HHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHH
Q 004425 412 LKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHA 488 (754)
Q Consensus 412 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 488 (754)
...|...+.... ..+...||.|.-. .. .|++.-|...|-+-... .+-+..+|..+--.|....+++.|...+.
T Consensus 799 ~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg--~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSLCANNEGLWNALGVL-SG--IGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHh-hc--cchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHH
Confidence 234555555433 5566778877655 33 56666666666554443 13344677777777788888888888888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc-----C---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc-
Q 004425 489 YSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGI-----S---DRDIVSWNAMLSAYALHGLGKGALLLFEEMKRE- 559 (754)
Q Consensus 489 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 559 (754)
...... +.+..-|-.....-...|+.-++..+|..- . -++..-|-....-...+|+.++-+..-+.+-..
T Consensus 875 ~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 875 SVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred hhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 776643 234444443333445567777777777642 1 144444544444455666666554443333211
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHH----HHHHHHhhcCCHHHHHHHHHhC
Q 004425 560 --------GFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFA----CMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 560 --------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
|.+-+...|........+.+.+..|.+...+...-...+-+...|+ .....+...|.++.|..-+...
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~ 1033 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE 1033 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc
Confidence 2233446788888888888888888877776544223333444444 4555666778888877776655
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 628 PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS---FILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 628 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+..-|..+..+-+.. ...|+++.+...|++++.+-.++... ...++.....++.-+.|....-+...
T Consensus 1034 ~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1034 WMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred chhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 444444444333333 45678999999999999876554442 33344445566677777766555544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.9e-05 Score=78.86 Aligned_cols=222 Identities=11% Similarity=0.060 Sum_probs=145.6
Q ss_pred hccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCCC-----------Ch-hhHHHHHHHHh
Q 004425 68 SIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVR-----------SA-ITWTSLIKGYL 135 (754)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----------~~-~~~~~li~~~~ 135 (754)
|..-|+.+.|.+-.+.+. +..+|..+-+++.+..+++-|.-.+..|..- +. ..-..+.-.-.
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 344577777776666554 3457899999999998888887777776221 11 11112222234
Q ss_pred cCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHH
Q 004425 136 DDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAEN 215 (754)
Q Consensus 136 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (754)
.-|..++|..+|++.++. ..+=+.|-..|.+++|.++-+.--+-.+. .||-....-+-..++++.|++
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHH
Confidence 568889999999988764 33445566778888888876543222222 234444444556678888888
Q ss_pred HhccCCC-----------------------CCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 004425 216 VFRGLAY-----------------------KDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYE 272 (754)
Q Consensus 216 ~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 272 (754)
.|++... +|...|.---..+-..|+.+.|+.+|...+ .|-++++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEee
Confidence 8876542 133445545555556788888888887654 35667777888
Q ss_pred cCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccC
Q 004425 273 NLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAIS 322 (754)
Q Consensus 273 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 322 (754)
.|+.++|.++-++ .-|....-.|.+.|-..|++.+|..+|.+..
T Consensus 951 qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 951 QGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8888888887665 2355556667788888888888888887654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00047 Score=81.42 Aligned_cols=225 Identities=12% Similarity=0.065 Sum_probs=112.3
Q ss_pred HHHHhcccchHHHHHHHHHHHHhCC---CC--chhHHHHHHHHHHhcCCHHHHHHHHhccCC-------C----ChhHHH
Q 004425 471 LSLSASQACLVRGRSLHAYSIKTGY---AA--DVIVGNALITMYAKCGSIDGAFQIFKGISD-------R----DIVSWN 534 (754)
Q Consensus 471 l~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~ 534 (754)
...+...|+++.|...+.......- .+ .......+...+...|++++|...+++... + ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 3344455555555555555443210 01 112233444455566666666665554321 0 111233
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHH-----H
Q 004425 535 AMLSAYALHGLGKGALLLFEEMKRE--GFAPD--DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHF-----A 605 (754)
Q Consensus 535 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~ 605 (754)
.+...+...|++++|...+++.... ...+. ...+..+.......|++++|...++.+............+ .
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 3444555567777776666665432 11121 1233334445566677777777766664421111100001 0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCChHHHHHHHHHhhccCCC------CcchHHHH
Q 004425 606 CMVDLLGRAGRLSEAMNLINSSPFS--ESP----LLWRTLVSVSKLMANSKFSILASKRLLDLEPK------DAGSFILV 673 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l 673 (754)
.....+...|+.++|.+++...... ... ..+..+..++...|+.++|...++++++.... ...++..+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 1123344567777777776544211 111 11344555666677777777777777664211 22356666
Q ss_pred HHHHHhcCCchHHHHHHHHHhh
Q 004425 674 SNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 674 ~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+.+|.+.|+.++|...+.+..+
T Consensus 738 a~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777776654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.7e-07 Score=88.56 Aligned_cols=156 Identities=12% Similarity=0.115 Sum_probs=95.4
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCC
Q 004425 505 LITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACI----YSGL 580 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~ 580 (754)
...+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ +..|.. ...+..++. ..+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchh
Confidence 344566778888888887765 4455555677788888888888888888877 444543 333333332 2235
Q ss_pred HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHH
Q 004425 581 SEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANS-KFSILASK 657 (754)
Q Consensus 581 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~ 657 (754)
+.+|..+|+++.+ ...+++.+.+.+.-+....|++++|.+++++. ...| |+.++..++-+....|+. +.+.+...
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 7778888888755 34556666666666677777777777666543 3333 455555555555555655 55666666
Q ss_pred HhhccCCCCc
Q 004425 658 RLLDLEPKDA 667 (754)
Q Consensus 658 ~~~~~~p~~~ 667 (754)
++...+|+++
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 6666666643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-05 Score=73.70 Aligned_cols=385 Identities=12% Similarity=0.048 Sum_probs=190.1
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC--CCchhHHH-HHHHHH
Q 004425 261 YTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE--RNLISWTA-LISGYV 337 (754)
Q Consensus 261 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~ 337 (754)
.-|++++..+.+..++..+.+++..-.+.. +.+....+.|...|....++..|-..++.+.. |...-|.. -...+.
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 334555555555555555555555444332 12444445555566666666666666666543 33333322 234555
Q ss_pred hcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHH
Q 004425 338 RSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARM 417 (754)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 417 (754)
+.+.+.+|+.+...|.+. |+...-..-+.+.. ....+++..++.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAI---------------------------------kYse~Dl~g~rs 133 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAI---------------------------------KYSEGDLPGSRS 133 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHH---------------------------------hcccccCcchHH
Confidence 666777777777666542 11111111111110 111233333444
Q ss_pred HHhcCCC-CChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCC
Q 004425 418 LLDGFSC-KYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLA-GMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGY 495 (754)
Q Consensus 418 ~~~~~~~-~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 495 (754)
+.++.+. .+..+.+.......+ .|+++.|++-|+...+- |.+| ...|+..+ +.-+.++.+.|.++..+++++|+
T Consensus 134 LveQlp~en~Ad~~in~gCllyk--egqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 134 LVEQLPSENEADGQINLGCLLYK--EGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHhccCCCccchhccchheeec--cccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhh
Confidence 4444331 222222222222223 45555555555544442 2332 22333322 22334445555555555544433
Q ss_pred CC-------------c---------------hhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CChhHHHHHHHHHHH
Q 004425 496 AA-------------D---------------VIVGNALITMYAKCGSIDGAFQIFKGISD-----RDIVSWNAMLSAYAL 542 (754)
Q Consensus 496 ~~-------------~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~ 542 (754)
+. | +..+|.-...+.+.|+++.|.+.+-.|+. -|++|...+.-.- .
T Consensus 210 r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~ 288 (459)
T KOG4340|consen 210 RQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-M 288 (459)
T ss_pred hcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-c
Confidence 21 1 11122223345678999999999999964 4777776554322 2
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCC-CCccHHHHHHHHHh-hcCCHHH
Q 004425 543 HGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLR-PILEHFACMVDLLG-RAGRLSE 619 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~ 619 (754)
.+++.+..+-++-++. +.| -..||..++-.||+..-++-|..++-+-.. .-+. -+...| .+++++. ..-..++
T Consensus 289 ~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly-~LLdaLIt~qT~pEe 364 (459)
T KOG4340|consen 289 DARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLY-DLLDALITCQTAPEE 364 (459)
T ss_pred cCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHH-HHHHHHHhCCCCHHH
Confidence 3556666666666666 445 346999999999999988888877643211 0000 011122 3444443 3456777
Q ss_pred HHHHHHhCCCCCCHHHHHHH-HHHH-HhcCChH----HHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 620 AMNLINSSPFSESPLLWRTL-VSVS-KLMANSK----FSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 620 A~~~~~~~~~~p~~~~~~~l-~~~~-~~~g~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
|.+-++.+...- ..-.+.+ +..- .++.+-+ .++.-+++.+++- -......+++|.+..++..++++|+.-
T Consensus 365 a~KKL~~La~~l-~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~S 440 (459)
T KOG4340|consen 365 AFKKLDGLAGML-TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKS 440 (459)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHH
Confidence 777665541100 0001111 1111 1122222 2333344444432 224566788899999999999999865
Q ss_pred hh
Q 004425 694 ND 695 (754)
Q Consensus 694 ~~ 695 (754)
.+
T Consensus 441 ve 442 (459)
T KOG4340|consen 441 VE 442 (459)
T ss_pred Hh
Confidence 44
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.76 E-value=8e-07 Score=85.85 Aligned_cols=179 Identities=11% Similarity=-0.005 Sum_probs=111.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----H
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD--RD-I---VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI----S 567 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 567 (754)
....+..+...+.+.|++++|...|+++.+ |+ . .+|..+..+|...|++++|+..++++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 344555566667777777777777776643 22 1 3455666677777777777777777776 334322 3
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 004425 568 ILGVLQACIYS--------GLSEGGICLFNEIEQIYGLRPIL-EHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRT 638 (754)
Q Consensus 568 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 638 (754)
+..+..++... |++++|.+.|+.+... .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 44444444433 5566677777666542 2322 111111110 0000000 011224
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKD---AGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+...+...|+.++|...++++++..|++ +.++..++.+|...|++++|...++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667788899999999999999997765 468999999999999999999999987654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-07 Score=89.13 Aligned_cols=237 Identities=11% Similarity=0.039 Sum_probs=154.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPD--PVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAF 519 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 519 (754)
.|++..++.-.+ ... ..+. ......+.+++...|..+.+ ..++.+.. .|.......+...+...++-+.+.
T Consensus 14 ~G~Y~~~i~e~~-~~~--~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKS--FSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp TT-HHHHCHHHH-CHT--STCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred hhhHHHHHHHhh-ccC--CCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 566666665444 221 1222 23344556666666765532 23333333 555555555555444435566666
Q ss_pred HHHhccC-CCC---hhHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004425 520 QIFKGIS-DRD---IVSWNA-MLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQI 594 (754)
Q Consensus 520 ~~~~~~~-~~~---~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 594 (754)
.-+++.. ++. -.++.. ....+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~- 159 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ- 159 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 6665443 221 122222 224456679999999988652 3456677788899999999999999999965
Q ss_pred hCCCCCccHHH----HHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc
Q 004425 595 YGLRPILEHFA----CMVDLLGRAGRLSEAMNLINSSP--FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 595 ~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
+..| .+.. +.+..+.-...+.+|.-+|+++. ..+++.+.+.+..+....|++++|+.+++++++.+|+++.
T Consensus 160 --~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 160 --IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp --CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred --cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 3333 3333 33444433457999999999883 3468888899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCc-hHHHHHHHHHhh
Q 004425 669 SFILVSNMYAGQGML-DEAAKVRTTMND 695 (754)
Q Consensus 669 ~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 695 (754)
+...++-+....|+. +.+.+.+.+++.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 999999999999998 667788888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-05 Score=81.27 Aligned_cols=253 Identities=11% Similarity=-0.022 Sum_probs=152.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH-HHHH---HHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPV-TFSR---LLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDG 517 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~-~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 517 (754)
.|++++|.+++++..+. .|+.. .+.. ........+....+.+.+.. .....+........+...+...|++++
T Consensus 56 ~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 56 AGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred cCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 78888888888887765 34443 3321 11111223444444444443 111112223344455667888899999
Q ss_pred HHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004425 518 AFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGF-APDD--ISILGVLQACIYSGLSEGGICLFNEI 591 (754)
Q Consensus 518 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~ 591 (754)
|.+.+++..+ .+...+..+...|...|++++|+.++++...... .|+. ..|..+...+...|++++|..++++.
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9988888754 3456677788888888999999999888876422 1222 24556777888889999999999887
Q ss_pred HHHhCCCCCccHH-H--HHHHHHhhcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 592 EQIYGLRPILEHF-A--CMVDLLGRAGRLSEAMNL---INS---S-PFSESPLLWRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 592 ~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
.......+..... + .+...+...|....+.++ ... . +.............++...|+.+.|...++.+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4311111111111 1 233333444533333332 111 1 1111223333566677788899999999888765
Q ss_pred cCCC---------CcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 662 LEPK---------DAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 662 ~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
..-. ........+.++...|++++|.+.+......+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 293 RASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3211 34566778888999999999999998876543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-05 Score=78.27 Aligned_cols=175 Identities=11% Similarity=0.058 Sum_probs=101.4
Q ss_pred HHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 004425 507 TMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGI 585 (754)
Q Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 585 (754)
.+|.+.++++.|...|.+...+... -....+....++++...+...- +.|+.. -...-...+.+.|++..|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHH
Confidence 4555556666666666654221100 1111223344455554444443 334432 2222355666777777777
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 586 CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
..|.+++. ..+-|...|....-+|.+.|.+.+|++-.+.. ...|+ ...|.--+.++....+++.|...|++.++++
T Consensus 379 ~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 379 KHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777766 22444566777777777777777777665543 23333 3334333445556678999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHH
Q 004425 664 PKDAGSFILVSNMYAGQGMLDEAAKVR 690 (754)
Q Consensus 664 p~~~~~~~~l~~~~~~~g~~~~a~~~~ 690 (754)
|++......+.+++..+...+...++.
T Consensus 457 p~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 457 PSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred chhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 998888887777777643333333333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-07 Score=79.93 Aligned_cols=123 Identities=11% Similarity=0.021 Sum_probs=87.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 004425 551 LLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PF 629 (754)
Q Consensus 551 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 629 (754)
.+|++.++ +.|+. +..+..++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45566665 55654 44556677777888888888877754 22334566777777777888888888777755 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 630 SE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 630 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
.| ++..|..+..++...|+.++|+..+++++++.|+++..+..++++...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34 677888888888888888888888888888888888888777776543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-06 Score=80.96 Aligned_cols=119 Identities=12% Similarity=0.096 Sum_probs=93.1
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hHHH
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVS-KLMAN--SKFS 652 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~a 652 (754)
.++.+++...++...+ .-+.+...|..+...|...|++++|...+++. ...| ++..+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666655 33445667778888888888888888888765 3445 688888888764 56676 5999
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 653 ILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
.++++++++.+|+++.++..++..+.+.|++++|...++++.+...
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999876443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.7e-06 Score=81.59 Aligned_cols=211 Identities=9% Similarity=-0.003 Sum_probs=137.4
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhccCC---CChhHHHHHHHHHHHcCCh--HHHHH
Q 004425 478 ACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCG-SIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLG--KGALL 551 (754)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~ 551 (754)
+..++|.....++++.+ +-+..+|+....++.+.| ++++++..++++.+ .+..+|+...-.+.+.|+. ++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 34455555555555433 222334444444455555 46777777776643 3445666555455555553 66788
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc---CC----HHHHHHH
Q 004425 552 LFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA---GR----LSEAMNL 623 (754)
Q Consensus 552 ~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~ 623 (754)
+++++++ ..| |..+|.....++.+.|+++++++.++++.+. . .-+...|+....++.+. |. .++++++
T Consensus 130 ~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 130 FTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 8888887 445 4467888888888888888888888888762 2 23344555444444443 22 2466777
Q ss_pred HH-hCCCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcC----------------
Q 004425 624 IN-SSPFSE-SPLLWRTLVSVSKLM----ANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQG---------------- 681 (754)
Q Consensus 624 ~~-~~~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------- 681 (754)
.. .+...| |...|+.+.+.+... ++..+|...+.+++..+|+++.+...|+++|+...
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 64 444455 688999999988774 45577999999999999999999999999998743
Q ss_pred --CchHHHHHHHHH
Q 004425 682 --MLDEAAKVRTTM 693 (754)
Q Consensus 682 --~~~~a~~~~~~m 693 (754)
..++|.++++.+
T Consensus 286 ~~~~~~a~~~~~~l 299 (320)
T PLN02789 286 LSDSTLAQAVCSEL 299 (320)
T ss_pred cccHHHHHHHHHHH
Confidence 235677777766
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.9e-07 Score=76.93 Aligned_cols=97 Identities=13% Similarity=0.036 Sum_probs=86.2
Q ss_pred CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 600 ILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 600 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
+.+..-.+...+...|++++|.++|+-. ...| +...|..|..+|+..|++++|+.+|.++..++|+|+.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455667778888999999999999865 3445 7889999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHhhC
Q 004425 678 AGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 678 ~~~g~~~~a~~~~~~m~~~ 696 (754)
...|+.++|.+.|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999987653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.2e-08 Score=60.86 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=27.7
Q ss_pred CCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCC
Q 004425 189 GFENNVFVGTSLISMYFHSGCFREAENVFRGLA 221 (754)
Q Consensus 189 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 221 (754)
|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00097 Score=67.44 Aligned_cols=178 Identities=15% Similarity=0.105 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHH
Q 004425 445 EEDVMVLFSQQRLA-GMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAA-DVIVGNALITMYAKCGSIDGAFQIF 522 (754)
Q Consensus 445 ~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 522 (754)
.+.....++++... ...|+ .+|..+++.-.+..-+..|+.+|.++.+.+..+ ++.++++++..||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 45556666666543 23343 467788888888889999999999999988777 88899999998875 7889999999
Q ss_pred hccCC--CChhH-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC-
Q 004425 523 KGISD--RDIVS-WNAMLSAYALHGLGKGALLLFEEMKREGFAPDD--ISILGVLQACIYSGLSEGGICLFNEIEQIYG- 596 (754)
Q Consensus 523 ~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~- 596 (754)
+.-.+ +|... -...+.-+...|+-..|..+|++.+..++.||. ..|..+|.--+.-|++..+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 86543 45443 345677778889999999999999988778776 4899999988999999999998888776444
Q ss_pred -CCCCccHHHHHHHHHhhcCCHHHHHHHH
Q 004425 597 -LRPILEHFACMVDLLGRAGRLSEAMNLI 624 (754)
Q Consensus 597 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 624 (754)
..+...+-..+++-|.-.+....-..-+
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~~~el 533 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCSLDEL 533 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccccHHHH
Confidence 4455555666677776666554443333
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-05 Score=73.72 Aligned_cols=275 Identities=12% Similarity=0.072 Sum_probs=158.0
Q ss_pred HHhCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhcccchH
Q 004425 406 YAKGGDLKSARMLLDGFSCK---YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSR-LLSLSASQACLV 481 (754)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~ 481 (754)
+.+..++++|.+++..-.++ +....+.+.-.|.. ..++..|-..++++-.. .|...-|.. -...+-+.+.+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~--~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYR--LQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccH
Confidence 34444444444444433222 22233333344444 55555555555555443 344333321 122334445555
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHH----HHHhcCCHHHHHHHHhccC-CCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004425 482 RGRSLHAYSIKTGYAADVIVGNALIT----MYAKCGSIDGAFQIFKGIS-DRDIVSWNAMLSAYALHGLGKGALLLFEEM 556 (754)
Q Consensus 482 ~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 556 (754)
.|..+...|... ++ ..+..+. ..-..+++..+..+.++.. +.+..+.+.......+.|+++.|++-|+..
T Consensus 96 DALrV~~~~~D~---~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 96 DALRVAFLLLDN---PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred HHHHHHHHhcCC---HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 555555555331 11 1111111 1223466666667777666 345555555555566777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-------------c---------------cHHHHHH
Q 004425 557 KREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-------------L---------------EHFACMV 608 (754)
Q Consensus 557 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------------~---------------~~~~~l~ 608 (754)
.+-+---....|+..+.- .+.|+++.|+++..++++ .|++.. + +.++.-.
T Consensus 171 lqvsGyqpllAYniALaH-y~~~qyasALk~iSEIie-RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIE-RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHH-hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 663322234455544433 344677777777777766 344321 1 1233333
Q ss_pred HHHhhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCch
Q 004425 609 DLLGRAGRLSEAMNLINSSPF----SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLD 684 (754)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 684 (754)
..+.+.|+++.|.+.+-.||- +.|+++...+.-. -..++.-.+.+-++=+++++|-.++++-.+.-+|++..-++
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHh
Confidence 456788999999999999853 2377777655432 23466777888888899999988889999999999999999
Q ss_pred HHHHHHHH
Q 004425 685 EAAKVRTT 692 (754)
Q Consensus 685 ~a~~~~~~ 692 (754)
-|..++.+
T Consensus 328 lAADvLAE 335 (459)
T KOG4340|consen 328 LAADVLAE 335 (459)
T ss_pred HHHHHHhh
Confidence 99988763
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00024 Score=73.67 Aligned_cols=192 Identities=13% Similarity=0.045 Sum_probs=96.9
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCh--hHHHHHHHHHHH
Q 004425 470 LLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD-----RDI--VSWNAMLSAYAL 542 (754)
Q Consensus 470 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~ 542 (754)
+...+...|++++|...++...+.. +.+...+..+...|...|++++|...+++... ++. ..|..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344455555666666665555543 33345556666666677777777777665543 121 234456666777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-HHH-H--HHHHHHHhcCCHHHHHHHHHHHHHH--hCCCCCccHH--HHHHHHHhhc
Q 004425 543 HGLGKGALLLFEEMKREGFAPDD-ISI-L--GVLQACIYSGLSEGGICLFNEIEQI--YGLRPILEHF--ACMVDLLGRA 614 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p~~-~t~-~--~ll~a~~~~g~~~~a~~~~~~~~~~--~~~~p~~~~~--~~l~~~~~~~ 614 (754)
.|++++|+.++++.......+.. ... . .++.-+...|..+.+..+ +.+... .........+ ...+.++...
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 77777777777776542211111 111 1 222333333433333222 111110 0111111111 2456666777
Q ss_pred CCHHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 615 GRLSEAMNLINSSP--FSE---S------PLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 615 g~~~~A~~~~~~~~--~~p---~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
|+.++|...++.+. ... . ....-...-++...|+.+.|.+.+..++.+-
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 78888877776541 001 1 1111222334567788888888888877653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-06 Score=76.29 Aligned_cols=107 Identities=11% Similarity=-0.051 Sum_probs=91.4
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 586 CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
.++++.. .+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444443 34455 3567888999999999999999875 4445 79999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 664 PKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 664 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
|+++..+..++.++...|++++|...++......
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999876643
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.3e-06 Score=90.89 Aligned_cols=197 Identities=14% Similarity=0.122 Sum_probs=125.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD--------RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISIL 569 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 569 (754)
+...|-..+......++.++|++++++... .-...|.++++.-...|.-+...++|++..+ +---...|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHHH
Confidence 444555555556666666666666665532 1123566666666666666666777777766 322234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHh
Q 004425 570 GVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE---SPLLWRTLVSVSKL 645 (754)
Q Consensus 570 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~ 645 (754)
.|+..|.+.+.+++|.++++.|.++++ -....|..+++.+.++.+-++|..++++. ..-| ......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 677777777777777777777777544 45566777777777777777777776543 2222 23444445555566
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 646 MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
+|+.+++..+|+.++.-.|.-...|..+++.-.+.|..+.++.+|++..+.++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 77777777777777777777777777777777777777777777777665544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.7e-08 Score=58.75 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=22.9
Q ss_pred cCCCChhHHHHHHHHHHhcCChHHHHHHHHccC
Q 004425 290 GVVREISVGNAIVTMYGKHGMSEEAERMFDAIS 322 (754)
Q Consensus 290 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 322 (754)
|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777776663
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00059 Score=80.58 Aligned_cols=257 Identities=11% Similarity=-0.031 Sum_probs=150.0
Q ss_pred HHHhcCChhHHHHHHHHhHhcCcccCh----hhHHHHHHHhcccCChHHHHHHHHHHHHh----CC-CcchhHHHHHHHH
Q 004425 335 GYVRSGHGGKAINGFLEFLDLGICCDS----SCLATVIDGCSVCSNLELGLQLHGFAIKH----GY-LSDVRLGTALVDI 405 (754)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~ 405 (754)
.+...|++++|...+++..+.-...+. ...+.+...+...|+++.|...+.+.... |. .........+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 345667777777777666542111111 12334444456677777777777666542 11 1112344555566
Q ss_pred HHhCCCHHHHHHHHhcCCC-------CC----hhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHH
Q 004425 406 YAKGGDLKSARMLLDGFSC-------KY----TAEFNAILSGFMEKIADDEEDVMVLFSQQRLA--GMEPD--PVTFSRL 470 (754)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~--g~~p~--~~~~~~l 470 (754)
+...|+++.|...+++... .+ ...+..+...+.. .|++++|...+++.... ...+. ...+..+
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE--WARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH--hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 6777777777776654321 01 1122233344555 78888888887776542 11122 2334445
Q ss_pred HHHHhcccchHHHHHHHHHHHHhCCCC-chhHH-----HHHHHHHHhcCCHHHHHHHHhccCCCCh-------hHHHHHH
Q 004425 471 LSLSASQACLVRGRSLHAYSIKTGYAA-DVIVG-----NALITMYAKCGSIDGAFQIFKGISDRDI-------VSWNAML 537 (754)
Q Consensus 471 l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li 537 (754)
.......|+.+.|...+..+....-.. ....+ ...+..+...|+.+.|...+.....+.. ..+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 556677888888888887775431111 10001 1122445668899999998877654321 1134566
Q ss_pred HHHHHcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 538 SAYALHGLGKGALLLFEEMKRE----GFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 538 ~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
.++...|++++|...+++.... |..++. .+...+..++...|+.++|...+.+..+
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788889999999998887753 333322 3566666788889999999999988877
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.1e-06 Score=75.52 Aligned_cols=122 Identities=14% Similarity=0.105 Sum_probs=61.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh
Q 004425 572 LQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVSVSKLMANS 649 (754)
Q Consensus 572 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~ 649 (754)
-.++...|+-+....+...... ....+......++....+.|++.+|+..+++. +.++|...|+.+..+|-+.|+.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh
Confidence 3344444444444444444322 12222223333555555555555555555544 2333555555555555555555
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 650 KFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 650 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++|...+.+++++.|+++..+.+|+..|.-.|+.++|+.++.....
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.9e-06 Score=86.46 Aligned_cols=184 Identities=17% Similarity=0.124 Sum_probs=104.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004425 494 GYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQ 573 (754)
Q Consensus 494 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 573 (754)
+++|--..-..+...+.+.|-..+|..+|++. ..|.-.|.+|+..|+..+|..+..+-.+ -+||...|..+++
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555555666778888888888888888875 4577778888888888888888777776 5677778887777
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHH
Q 004425 574 ACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINS-SPFSE-SPLLWRTLVSVSKLMANSKF 651 (754)
Q Consensus 574 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~ 651 (754)
......-+++|.++++..... .-..+.....+.++++++.+.++. +...| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 766666666777666654331 000111111223444444444432 22222 23444444444444444444
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 652 SILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 652 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
|..+|.....++|++...|.+++-+|.+.|+-.+|.+.+++
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 44444444444444444444444444444444444444443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00052 Score=65.15 Aligned_cols=201 Identities=7% Similarity=-0.012 Sum_probs=95.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
+|+...|++....+++- ...|...|..-..+|...|.+..|..=+..+.+..- -+....--+-..+...|+.+.++..
T Consensus 168 ~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHH
Confidence 45555555555555543 133444444445555566666655555444444332 2233333445556666777777666
Q ss_pred HhccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC
Q 004425 522 FKGISD--RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP 599 (754)
Q Consensus 522 ~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 599 (754)
.++..+ ||... +|...+...+..+.++.|.+ ....+.|.++++-.+...+ ..|
T Consensus 246 iRECLKldpdHK~------Cf~~YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk---~ep 300 (504)
T KOG0624|consen 246 IRECLKLDPDHKL------CFPFYKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLK---NEP 300 (504)
T ss_pred HHHHHccCcchhh------HHHHHHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHh---cCC
Confidence 666544 33221 11111122222222222222 1122334444444444322 222
Q ss_pred C-----ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch
Q 004425 600 I-----LEHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 600 ~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
. ...+..+-.++...|++-+|++...++ ...|| ..++..-..++.....++.|+.-|+++.+.+|+|..+
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 2 122334445555556666666555543 33443 5555555566666666666666666666666665443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.6e-05 Score=75.02 Aligned_cols=135 Identities=21% Similarity=0.182 Sum_probs=64.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDDISIL-GVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRL 617 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 617 (754)
+...|++++|+..++.++. -.||...|. .....+...++.++|.+.++++.. ..|+ ....-.+..+|.+.|+.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCCh
Confidence 3344555555555555544 334443322 223344555555555555555533 2333 22333455555555555
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 618 SEAMNLINSS--PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 618 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.+|+..++.. ..+.|+..|..|..+|...|+..++..+ .+..|+..|+|++|.......++
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHHH
Confidence 5555555433 2222455555555555555554444433 23344555556666665555544
Q ss_pred C
Q 004425 696 L 696 (754)
Q Consensus 696 ~ 696 (754)
+
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 3
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.9e-05 Score=80.07 Aligned_cols=217 Identities=12% Similarity=0.117 Sum_probs=176.5
Q ss_pred CCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004425 391 GYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRL 470 (754)
Q Consensus 391 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 470 (754)
+++|--..-..+...+..+|-...|..+|+++ ..|.-.|..|+. .|+..+|..+..+..++ +||...|..+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~--lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLL--LGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHH--hcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 34555566677888899999999999999875 468888999999 99999999999888874 8999999999
Q ss_pred HHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---ChhHHHHHHHHHHHcCChH
Q 004425 471 LSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR---DIVSWNAMLSAYALHGLGK 547 (754)
Q Consensus 471 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 547 (754)
.+...+..-+++|.++.+..... .-..+.......++++++.+.|+.-.+- -..+|-....+..+.++++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 99988888899999888876543 1122223334478999999999876543 3468888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHh
Q 004425 548 GALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 548 ~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (754)
.|.+.|..-.. ..||.. .|+.+-.+|.+.|+-.+|...+++..+ .. .-+-..|...+-...+.|.+++|++.+.+
T Consensus 537 ~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 537 AAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999988 789875 899999999999999999999999988 56 44445666777788899999999999876
Q ss_pred C
Q 004425 627 S 627 (754)
Q Consensus 627 ~ 627 (754)
+
T Consensus 613 l 613 (777)
T KOG1128|consen 613 L 613 (777)
T ss_pred H
Confidence 6
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-05 Score=72.88 Aligned_cols=154 Identities=15% Similarity=0.171 Sum_probs=116.9
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 004425 506 ITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGG 584 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 584 (754)
+-.|.+.|+++......+.+..+. ..+...++.++++..+++.++ ..|+ ...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456888888887765554332221 112235677888888888887 4454 45888888899999999999
Q ss_pred HHHHHHHHHHhCCCC-CccHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004425 585 ICLFNEIEQIYGLRP-ILEHFACMVDLL-GRAGR--LSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKR 658 (754)
Q Consensus 585 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 658 (754)
...|++..+ +.| +...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999866 344 567788888864 67777 59999999876 4445 688899999999999999999999999
Q ss_pred hhccCCCCcchHHH
Q 004425 659 LLDLEPKDAGSFIL 672 (754)
Q Consensus 659 ~~~~~p~~~~~~~~ 672 (754)
+++++|.+..-+..
T Consensus 170 aL~l~~~~~~r~~~ 183 (198)
T PRK10370 170 VLDLNSPRVNRTQL 183 (198)
T ss_pred HHhhCCCCccHHHH
Confidence 99999886655443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.7e-05 Score=85.41 Aligned_cols=137 Identities=9% Similarity=-0.086 Sum_probs=104.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHH
Q 004425 529 DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFAC 606 (754)
Q Consensus 529 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 606 (754)
++..+-.|.....+.|++++|+.+++...+ +.||.. .+..+...+.+.+++++|...+++... ..|+ ..+...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 466677777788888888888888888888 778775 667777788888888888888888855 3444 566777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchH
Q 004425 607 MVDLLGRAGRLSEAMNLINSSP-FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSF 670 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 670 (754)
+..++.+.|++++|.++|+++. ..| ++.+|.++..++...|+.++|..+|+++++...+....|
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 8888888888888888888762 233 477888888888888888888888888888765544443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0057 Score=66.01 Aligned_cols=535 Identities=14% Similarity=0.080 Sum_probs=262.0
Q ss_pred ccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHH--HccCChhHHHHHhccCCC---CChhhHHHHHHHHhcCCChhHH
Q 004425 69 IGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLY--AKFNRLDVAQKLFDGMLV---RSAITWTSLIKGYLDDGDYESV 143 (754)
Q Consensus 69 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 143 (754)
...+++..|......+.+.. |+ ..|..++.++ .|.|+.++|..+++.... .|..|...+-.+|...+..++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34567777777777766543 23 2345555555 478899999988887632 3778888999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcC----------CHhHH
Q 004425 144 LGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSG----------CFREA 213 (754)
Q Consensus 144 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------~~~~A 213 (754)
..+|++.... -|+......++.++.+.+++.+-.++--++.+ .++.+.+.+=++++.+...- -..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999988754 56677888888888888887766655555554 23445555544555444321 12234
Q ss_pred HHHhccCCCCC--cch---HHHHHHHHHHcCChhHHHHHHH-HhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHH
Q 004425 214 ENVFRGLAYKD--VRC---VNFMILEYNKAGESEMAFHVFV-HLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAV 287 (754)
Q Consensus 214 ~~~~~~~~~~~--~~~---~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 287 (754)
.+.++.+.+.+ ..+ .-.-...+-..|++++|++++. ...+.-..-+...-+--+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444444333 111 1111223445677788887773 33333222233333344555666677777777777777
Q ss_pred HhcCCCChhHHHHHHHHHHh----------------cCChHHHHHHHHccCC-CCchhHHHHHHHH---HhcCChhHHHH
Q 004425 288 KFGVVREISVGNAIVTMYGK----------------HGMSEEAERMFDAISE-RNLISWTALISGY---VRSGHGGKAIN 347 (754)
Q Consensus 288 ~~g~~~~~~~~~~li~~~~~----------------~g~~~~A~~~~~~~~~-~~~~~~~~li~~~---~~~g~~~~A~~ 347 (754)
..|... |...++.+.+ .+..+...+..++... .....|-+-+..+ -.-|+.++++.
T Consensus 254 ~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 254 EKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred HhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHH
Confidence 766332 2222222111 1122222222211111 1112222222222 23355555544
Q ss_pred HHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCCh
Q 004425 348 GFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYT 427 (754)
Q Consensus 348 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 427 (754)
.|-+-. |-+| .|..=+..|...=..+.-..++....... ++...-...+..+.-.-+...+.-.+..|+....
T Consensus 330 ~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i 402 (932)
T KOG2053|consen 330 YYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSI 402 (932)
T ss_pred HHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence 433211 1111 12222222222222222222222222110 0000000000000000000111111222222222
Q ss_pred hhHH-HHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHhcccchHH---HHHHHHHHHHhC
Q 004425 428 AEFN-AILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPV---------TFSRLLSLSASQACLVR---GRSLHAYSIKTG 494 (754)
Q Consensus 428 ~~~~-~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~ 494 (754)
..+. .++..|.+ . +. ...++-|+.. +.+.++..+-+.++... |.-+++.-....
T Consensus 403 ~a~~~kl~~~ye~--g------ls-----~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s 469 (932)
T KOG2053|consen 403 LAYVRKLKLTYEK--G------LS-----LSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS 469 (932)
T ss_pred HHHHHHHHHHHhc--c------cc-----ccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC
Confidence 2222 22222222 0 00 0012233332 34566777777777653 333333333322
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHH
Q 004425 495 YAADVIVGNALITMYAKCGSIDGAFQIFKGISDR----DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD--ISI 568 (754)
Q Consensus 495 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~ 568 (754)
+.|..+--.+|..|+-.|-+..|.++|+.+.-+ |...|- +..-+...|++..+...++.... +--+. .+-
T Consensus 470 -~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lk--fy~~~~kE~~ 545 (932)
T KOG2053|consen 470 -PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLK--FYDSSLKETP 545 (932)
T ss_pred -CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHH--HHhhhhhhhH
Confidence 345555566889999999999999999988643 333332 23445566788777777766554 11111 122
Q ss_pred HHHHHHHHhcCCHHHHH---HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CHHHHHHH
Q 004425 569 LGVLQACIYSGLSEGGI---CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSE--SPLLWRTL 639 (754)
Q Consensus 569 ~~ll~a~~~~g~~~~a~---~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l 639 (754)
..+..||. .|.+.+.. .+-+++... .-.....+-+..++.++..++.++-...+..|..+| |.+.|.+|
T Consensus 546 eyI~~AYr-~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~~~e~~I~w~~L 619 (932)
T KOG2053|consen 546 EYIALAYR-RGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNADRGTQLLKLLESMKLPPSEDRIQWVSL 619 (932)
T ss_pred HHHHHHHH-cCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccccCcchhhcccccc
Confidence 22333333 34444433 333333321 111123345577888888999999888888876544 45555554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0037 Score=63.45 Aligned_cols=124 Identities=13% Similarity=0.153 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhcCC-----CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHH
Q 004425 397 RLGTALVDIYAKGGDLKSARMLLDGFS-----CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTF-SRL 470 (754)
Q Consensus 397 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~l 470 (754)
-+|..+++.-.+..-+..|+.+|.+.. ..++...++++.-||. ++.+-|.++|+--.+. -+|...| ...
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs---kD~~~AfrIFeLGLkk--f~d~p~yv~~Y 441 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS---KDKETAFRIFELGLKK--FGDSPEYVLKY 441 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc---CChhHHHHHHHHHHHh--cCCChHHHHHH
Confidence 344455555555555555555555443 1133445555555554 7777788887766554 3444333 455
Q ss_pred HHHHhcccchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 004425 471 LSLSASQACLVRGRSLHAYSIKTGYAAD--VIVGNALITMYAKCGSIDGAFQIFKGI 525 (754)
Q Consensus 471 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 525 (754)
++-+...++-..++.+|+.++..++.++ ..+|..+++.=..-|++..+.++-+++
T Consensus 442 ldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 442 LDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 6666677777777777777777655543 456666666666666666666655443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=4e-05 Score=84.07 Aligned_cols=132 Identities=17% Similarity=0.084 Sum_probs=116.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHH
Q 004425 561 FAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL-EHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWR 637 (754)
Q Consensus 561 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~ 637 (754)
+..+...+..|.....+.|.+++|..+++.+.+ +.|+. .....++..+.+.+++++|+..+++. ...|+ .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 555677889999999999999999999999955 67774 46678999999999999999999876 55664 66777
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 638 TLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 638 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.+..++...|++++|..+|+++++.+|+++.++..++.++...|+.++|...|++.-+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788888999999999999999999999999999999999999999999999998844
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.1e-05 Score=75.99 Aligned_cols=182 Identities=12% Similarity=-0.004 Sum_probs=128.8
Q ss_pred CCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-h---hH
Q 004425 462 PDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAAD---VIVGNALITMYAKCGSIDGAFQIFKGISD--RD-I---VS 532 (754)
Q Consensus 462 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~ 532 (754)
.....+..+...+...|+++.|...++.+.+.. +.+ ...+..+...|.+.|++++|...|+.+.+ |+ . .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 344567777888999999999999999998754 222 24667788999999999999999999854 32 2 24
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccH
Q 004425 533 WNAMLSAYALH--------GLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEH 603 (754)
Q Consensus 533 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 603 (754)
+..+..++... |++++|.+.|+++.+ ..|+.. ....+... .. .. .... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~-~~---~~------~~~~---------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRM-DY---LR------NRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHH-HH---HH------HHHH---------HH
Confidence 56666666654 789999999999998 456653 22211111 10 00 0000 01
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS----PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
...+...|.+.|++++|+..+++. +..| .+..|..+..++...|+.++|...++.+....|+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 235677888999999999988765 3333 3678889999999999999999988887766553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.2e-05 Score=74.02 Aligned_cols=121 Identities=19% Similarity=0.179 Sum_probs=102.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChH
Q 004425 573 QACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSK 650 (754)
Q Consensus 573 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 650 (754)
-.+...|.+++|+..++.+.. ..+-|.......++.+.+.++.++|.+.++++ ...|+ ...|-++.+++.+.|+..
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 345567889999999999866 34445556668889999999999999999876 55665 788889999999999999
Q ss_pred HHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 651 FSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 651 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+|++.++....-+|+|+..|..|+..|...|+..+|...+.++-.
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887754
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00013 Score=81.58 Aligned_cols=240 Identities=13% Similarity=0.152 Sum_probs=178.5
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHhcccchHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 004425 452 FSQQRLAGMEPDP-VTFSRLLSLSASQACLVRGRSLHAYSIKT-GYAA---DVIVGNALITMYAKCGSIDGAFQIFKGIS 526 (754)
Q Consensus 452 ~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 526 (754)
|++.... .||. ..|...|.-..+.++.+.|+++.+++++. ++.- -..+|.+++++-..-|.-+...++|+++.
T Consensus 1447 ferlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 3444443 4665 67888888889999999999999998864 2221 24567888888888888899999999987
Q ss_pred C-CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHH
Q 004425 527 D-RDI-VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHF 604 (754)
Q Consensus 527 ~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 604 (754)
+ .|. ..|..|...|.+.++.++|.++++.|.+. +.-....|...+..+.+...-+.|..++.++.+-..-.-.+...
T Consensus 1525 qycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1525 QYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred HhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 6 343 46888999999999999999999999975 44455689999999999999999999999987621111134455
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccC--CCCcch-HHHHHHHHHh
Q 004425 605 ACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLE--PKDAGS-FILVSNMYAG 679 (754)
Q Consensus 605 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~-~~~l~~~~~~ 679 (754)
.-.+.+-.+.|+.+++..+|+.. ...| ....|+.++..-.++|+.+.++.+|++++.+. |..... |......--.
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 66777778999999999999866 3334 68899999999999999999999999999864 443333 3333222233
Q ss_pred cCCchHHHHHHHHHh
Q 004425 680 QGMLDEAAKVRTTMN 694 (754)
Q Consensus 680 ~g~~~~a~~~~~~m~ 694 (754)
.|+-+.++.+-.+..
T Consensus 1684 ~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1684 HGDEKNVEYVKARAK 1698 (1710)
T ss_pred cCchhhHHHHHHHHH
Confidence 466555555544443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.2e-05 Score=75.35 Aligned_cols=187 Identities=9% Similarity=0.028 Sum_probs=139.2
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC
Q 004425 505 LITMYAKCGSIDGAFQIFKGISD--R-DIVSWNAMLSAYALHG-LGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSG 579 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 579 (754)
+-..+.+.++.++|+...+.+.+ | +..+|+.....+...| ++++++..++++.+. .|+. .+|+.....+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence 33345556788889999888765 3 3457777777777777 579999999999984 4544 46766666666666
Q ss_pred CH--HHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCh---
Q 004425 580 LS--EGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLM---ANS--- 649 (754)
Q Consensus 580 ~~--~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~--- 649 (754)
.. +++..+++++.+ .-+-+...|....-++.+.|++++|++.++++ ...| |..+|+.....+... |..
T Consensus 121 ~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 53 678888888865 23334667888888899999999999999987 3333 788898887776654 222
Q ss_pred -HHHHHHHHHhhccCCCCcchHHHHHHHHHhc----CCchHHHHHHHHHhh
Q 004425 650 -KFSILASKRLLDLEPKDAGSFILVSNMYAGQ----GMLDEAAKVRTTMND 695 (754)
Q Consensus 650 -~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 695 (754)
+.+.....++++++|+|..+|..++.+|... ++..+|.+...+...
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 4677778899999999999999999999883 456778888776544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.5e-05 Score=75.96 Aligned_cols=213 Identities=13% Similarity=0.086 Sum_probs=111.2
Q ss_pred cccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHH
Q 004425 372 SVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDV 448 (754)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A 448 (754)
.+.|++..|.-.|+..++.. +-+...|..|.......++-..|+..+++.. ..|....-+|.-.|.. .|.-.+|
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN--eg~q~~A 372 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTN--EGLQNQA 372 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh--hhhHHHH
Confidence 45666777777777666654 4455566666666666666666666665544 3344444455556666 6666666
Q ss_pred HHHHHHHHHcCCC--------CCHHHHHHHHHHHhcccchHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004425 449 MVLFSQQRLAGME--------PDPVTFSRLLSLSASQACLVRGRSLHAYSI-KTGYAADVIVGNALITMYAKCGSIDGAF 519 (754)
Q Consensus 449 ~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~ 519 (754)
+..++.-+....+ ++..+-.. +.......+....++|-++. ..+..+|+.++..|.-.|--.|+++.|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 6666665443100 00000000 11111122223333333332 3343455555666666666666666666
Q ss_pred HHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 004425 520 QIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEI 591 (754)
Q Consensus 520 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~ 591 (754)
..|+.... .|...||-|...++...+.++|+.-|++.++ ++|+.+ ....|.-+|...|.+++|.++|=.+
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 66665532 2445566666666666666666666666665 556553 3344445556666666665555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.2e-05 Score=68.70 Aligned_cols=119 Identities=13% Similarity=0.038 Sum_probs=64.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMAN 648 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 648 (754)
.+....+.|++.+|...+.+... .-++|.+.|+.+.-+|.+.|++++|..-|.+. .+.| ++...+.+...+...|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444455555555555555543 33444455555555555555555555444332 2222 45555566666666666
Q ss_pred hHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 004425 649 SKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRT 691 (754)
Q Consensus 649 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 691 (754)
.+.|+.++..+....+.|...-..|+.+....|++++|..+..
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 6666666666666555556666666666666666666665543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.6e-05 Score=80.44 Aligned_cols=122 Identities=12% Similarity=0.143 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 004425 568 ILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKL 645 (754)
Q Consensus 568 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 645 (754)
...++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344555666667777777777777652 243 4445677777777777777777654 2233 67777788888999
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 646 MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
.++.+.|+.+++++.++.|++..+|..|+.+|...|++++|+-.+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998885
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.28 E-value=9e-06 Score=70.63 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=72.6
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
.....++..+...|++++|.+.++.. ...| ++..|..+...+...|+++.|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34556666666777777777777654 2233 677788888888888888888888888888888888888888888888
Q ss_pred cCCchHHHHHHHHHhh
Q 004425 680 QGMLDEAAKVRTTMND 695 (754)
Q Consensus 680 ~g~~~~a~~~~~~m~~ 695 (754)
.|++++|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8999988888887655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.8e-05 Score=67.77 Aligned_cols=183 Identities=14% Similarity=0.105 Sum_probs=139.9
Q ss_pred cCCHHHHHHHHhccCC--------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCH
Q 004425 512 CGSIDGAFQIFKGISD--------RDI-VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGV-LQACIYSGLS 581 (754)
Q Consensus 512 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~ 581 (754)
..+.++..+++.++.. ++. ..|..++-+....|+.+-|..+++++.+.- |.+.-...+ ..-+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4578889998887742 333 245566677788899999999999998753 655432222 2345678999
Q ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 004425 582 EGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVSVSKLMANSKFSILASKRL 659 (754)
Q Consensus 582 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 659 (754)
++|+++++.+.++ -+-|..++--=+-++-..|+.-+|++-+.+. .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999874 3445566776677777788888888776654 35579999999999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCC---chHHHHHHHHHhhCCC
Q 004425 660 LDLEPKDAGSFILVSNMYAGQGM---LDEAAKVRTTMNDLRL 698 (754)
Q Consensus 660 ~~~~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~ 698 (754)
+=+.|-++..+..+++++...|- .+-|.+.+.+..+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999887774 5556666666554433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.6e-05 Score=66.15 Aligned_cols=114 Identities=7% Similarity=0.055 Sum_probs=88.2
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 004425 552 LFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PF 629 (754)
Q Consensus 552 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 629 (754)
+|++.+. ..|+. .....+...+...|++++|...|+.+... .+.+...+..+..++.+.|++++|.+.++.. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556665 55654 34566677788888999999998888662 2345677888888888999999999888765 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch
Q 004425 630 SE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 630 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
.| ++..|..+...+...|+.++|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 34 67888888889999999999999999999999987653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.8e-06 Score=52.76 Aligned_cols=35 Identities=31% Similarity=0.402 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCc
Q 004425 226 RCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPND 260 (754)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 260 (754)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0012 Score=60.90 Aligned_cols=145 Identities=14% Similarity=0.132 Sum_probs=81.7
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004425 506 ITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGI 585 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 585 (754)
...|...|++++|++.......-+....+. ..+.+..+.+-|.+.+++|.+ +. +..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~-------- 181 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVK-------- 181 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHH--------
Confidence 345666677777777666633333333332 223444556666666666665 22 33455544444432
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 586 CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSP--FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
...-.+.+.+|.-+|+++. ..|++.+.+....+|...||+++|+.+++.++..+
T Consensus 182 ------------------------la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 182 ------------------------LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred ------------------------HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 1111223444444444442 34566666666666667777777777777777777
Q ss_pred CCCcchHHHHHHHHHhcCCchHHH
Q 004425 664 PKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 664 p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
++++.+..+++-+-...|+-.++.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHH
Confidence 777777777766666666665544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00049 Score=76.47 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
..+|--+-..|....+++++..+++.+++.+|.|.-+..-++..|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3344455577788889999999999999999999888888888876
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.1e-06 Score=52.58 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCh
Q 004425 125 ITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNE 159 (754)
Q Consensus 125 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 159 (754)
.+||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.2e-05 Score=73.38 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=60.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 004425 572 LQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMAN 648 (754)
Q Consensus 572 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 648 (754)
..-..+.+++++|+..|..+++ +.|+ ...|..-..+|.+.|.++.|++=.+.. .+.|. ...|..|..++...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 4445566677777777777644 4443 344455666677777777776665543 44442 5566666667777777
Q ss_pred hHHHHHHHHHhhccCCCCcchHHHH
Q 004425 649 SKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 649 ~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
+++|++.|+++++++|++......|
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 7777777777777777765433333
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00015 Score=63.54 Aligned_cols=85 Identities=18% Similarity=0.159 Sum_probs=43.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcC
Q 004425 607 MVDLLGRAGRLSEAMNLINSSP-FSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQG 681 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 681 (754)
+...+...|++++|.+.|+.+. ..|| ...+..|...+...|++++|...++.. .-.+-.+..+..+|++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence 3444444555555555544431 1122 123333445555555555555555442 222223456666777777777
Q ss_pred CchHHHHHHHH
Q 004425 682 MLDEAAKVRTT 692 (754)
Q Consensus 682 ~~~~a~~~~~~ 692 (754)
++++|...|++
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 77777776654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.1e-06 Score=50.53 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHhHHCCCCC
Q 004425 226 RCVNFMILEYNKAGESEMAFHVFVHLLSSDFEP 258 (754)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 258 (754)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.3e-06 Score=50.71 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=27.3
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCC
Q 004425 125 ITWTSLIKGYLDDGDYESVLGIACDMYRSEEKF 157 (754)
Q Consensus 125 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 157 (754)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.7e-06 Score=64.19 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHH
Q 004425 614 AGRLSEAMNLINSS----PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKV 689 (754)
Q Consensus 614 ~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 689 (754)
.|++++|+.+++++ +..++...|..+..++...|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666554 2112455666778888888888888888888 777777777777889999999999999998
Q ss_pred HHH
Q 004425 690 RTT 692 (754)
Q Consensus 690 ~~~ 692 (754)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00022 Score=72.26 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 004425 501 VGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSG 579 (754)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 579 (754)
...+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++. .| |...+..-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456667777889999999999998777666677888888888999999999998863 44 4455666666788999
Q ss_pred CHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 004425 580 LSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSSPFSE 631 (754)
Q Consensus 580 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 631 (754)
+++.|..+.+++.+ ..|+ ..+|..|+.+|...|++++|+..++.+|..+
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999976 3454 5689999999999999999999999886543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.8e-05 Score=59.05 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcC-CchHHHHHHHHHhh
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQG-MLDEAAKVRTTMND 695 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 695 (754)
++..|..+...+...|++++|+..++++++++|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999987654
|
... |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0027 Score=58.56 Aligned_cols=137 Identities=12% Similarity=0.081 Sum_probs=92.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-
Q 004425 450 VLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR- 528 (754)
Q Consensus 450 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 528 (754)
++.+.+.......+......-...|...+++++|.+...... +......=+..+.|..+++-|.+.++.|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344445444444443333444456788888888887766521 2333333355677788888888888888774
Q ss_pred ChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 529 DIVSWNAMLSAYAL----HGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 529 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
+-.+.+.|..++.+ .+...+|.-+|++|-++ ..|+..+.+....+|...|++++|..+++....
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34566666666543 34578888888888763 567888888888888888888888888888766
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.3e-05 Score=60.02 Aligned_cols=92 Identities=14% Similarity=0.222 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcC
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQG 681 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 681 (754)
+..++..+...|++++|.+.++++ ...| +...|..+...+...|+.++|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677777888888888888765 3333 45677788888888899999999999999999998889999999999999
Q ss_pred CchHHHHHHHHHhh
Q 004425 682 MLDEAAKVRTTMND 695 (754)
Q Consensus 682 ~~~~a~~~~~~m~~ 695 (754)
++++|...++....
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999999887644
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00044 Score=60.59 Aligned_cols=124 Identities=16% Similarity=0.134 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc--cHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPDD----ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL--EHFAC 606 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~ 606 (754)
|..++..+ ..++...+...++++.+.. |+. .....+...+...|++++|...|+.+... .-.|.. .....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44445555 4788888888888888743 333 23344556777888999999999888773 322322 23446
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004425 607 MVDLLGRAGRLSEAMNLINSSPFSE-SPLLWRTLVSVSKLMANSKFSILASKRLL 660 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 660 (754)
+..++...|++++|+..++..+..+ .+..+...+..+...|+.++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7888888999999999998764333 56677788888899999999999988764
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00011 Score=74.92 Aligned_cols=85 Identities=9% Similarity=0.097 Sum_probs=47.4
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 004425 611 LGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 688 (754)
+...|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33445555555555433 2223 355555555555566666666666666666666666666666666666666666666
Q ss_pred HHHHHhh
Q 004425 689 VRTTMND 695 (754)
Q Consensus 689 ~~~~m~~ 695 (754)
.+++...
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 6655433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.023 Score=55.49 Aligned_cols=271 Identities=15% Similarity=0.146 Sum_probs=178.6
Q ss_pred CCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcccchHHH
Q 004425 409 GGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP--VTFSRLLSLSASQACLVRG 483 (754)
Q Consensus 409 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a 483 (754)
.|+-..|++.-.+.. ..|....-.++.+-.....|+++.|.+-|+.|... |.. .-...|.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 455555555544322 33444444555544444478899999999888752 433 2334444455678888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCChh--HHHHHHHHHH---HcCChHHHHHHH
Q 004425 484 RSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS-----DRDIV--SWNAMLSAYA---LHGLGKGALLLF 553 (754)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~ 553 (754)
.++-+...+.- +--.-...+.+...+..|+++.|+++.+.-. ++|+. .--.|+.+-+ -.-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877776543 2234556788899999999999999998654 34443 1222332211 123456666666
Q ss_pred HHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC----C
Q 004425 554 EEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS----P 628 (754)
Q Consensus 554 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 628 (754)
.+..+ +.||-+ .-.....++.+.|++.++-.+++.+.+ ..|.......++ +.|.|+. +.+-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHh
Confidence 66555 788876 444556789999999999999999965 456555443332 3455543 33222221 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc-CCchHHHHHHHHH
Q 004425 629 FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ-GMLDEAAKVRTTM 693 (754)
Q Consensus 629 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m 693 (754)
.+| +.....++..+-...|++..|....+.+...+|. ...|.+|+++-... |+-.++..+..+.
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 345 5666777788888899999999999999999999 67899999997655 9988888777643
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0072 Score=67.51 Aligned_cols=170 Identities=10% Similarity=0.082 Sum_probs=105.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
..++.-...+...|... .-+...+..+..+|.+.|+.+++..+++++++.. +-|+.+.|.+...|... ++++|.++
T Consensus 96 ~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 96 NLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 34443333344444442 2333467778888889999999999999999887 66788889999999988 99999998
Q ss_pred HhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC
Q 004425 522 FKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISI-LGVLQACIYSGLSEGGICLFNEIEQIYGLRPI 600 (754)
Q Consensus 522 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 600 (754)
+.+. +..|...+++.++.++|.++.. ..|+.+.+ ..+++ .+....|..--
T Consensus 172 ~~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~----------------ki~~~~~~~~~ 222 (906)
T PRK14720 172 LKKA-----------IYRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIER----------------KVLGHREFTRL 222 (906)
T ss_pred HHHH-----------HHHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHH----------------HHHhhhccchh
Confidence 8764 3447777788888999988888 55654432 22222 22221222222
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSK 644 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 644 (754)
+.++-.+...|...++++++..+++.+ ...| |.....-++..|+
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 334444555555566666666666654 2222 3333444444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00077 Score=65.85 Aligned_cols=152 Identities=11% Similarity=0.045 Sum_probs=109.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHhCCCCCcc-------------
Q 004425 538 SAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQ--ACIYSGLSEGGICLFNEIEQIYGLRPILE------------- 602 (754)
Q Consensus 538 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~------------- 602 (754)
.++...|++++|...--..++ +.++.. +..+++ ++-..++.+.|...|++.. .+.|+-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilk--ld~~n~-~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILK--LDATNA-EALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHh--cccchh-HHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 456667888888777666665 333222 222222 3445667778888877763 3444421
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHH
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-PFSE-----SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNM 676 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 676 (754)
.+.-=..-..+.|++.+|.+.+.+. .+.| +...|.....+..+.|+.++|+.-.+.+++++|....+|...+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 1222344566889999999999754 4444 566677777777889999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHhh
Q 004425 677 YAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 677 ~~~~g~~~~a~~~~~~m~~ 695 (754)
+...++|++|++-+++.-+
T Consensus 331 ~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988755
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.2e-05 Score=56.83 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=49.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+...+...|++++|+..++++++.+|+++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566778899999999999999999999999999999999999999999999887653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0014 Score=59.85 Aligned_cols=176 Identities=16% Similarity=0.134 Sum_probs=133.7
Q ss_pred CCCch-hHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHH---HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004425 495 YAADV-IVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAM---LSAYALHGLGKGALLLFEEMKREGFAPDDISILG 570 (754)
Q Consensus 495 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 570 (754)
..++. .+|..++-+...+|+.+.|...++.+...-+.++... ..-+-..|++++|+++|+..++.+ +-|.+++-.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KR 125 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKR 125 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHH
Confidence 34554 3455566677788999999999998764222222221 122445799999999999999865 335678877
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMA- 647 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g- 647 (754)
=+...-..|+--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.=.++++ -..| ++..+..+...+...|
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 77777788888899998888887 57888999999999999999999999999987 4455 6777777877766554
Q ss_pred --ChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 648 --NSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 648 --~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
|.+.|...|.++++++|.+...+.-+
T Consensus 204 ~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 204 AENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 88899999999999999765554433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00016 Score=61.02 Aligned_cols=93 Identities=12% Similarity=0.018 Sum_probs=51.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC---cchHHHHHH
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS-PFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD---AGSFILVSN 675 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 675 (754)
+...+..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|+++.|...+++++...|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344444555555555555555443 11121 2344455566666666666666666666666553 345666666
Q ss_pred HHHhcCCchHHHHHHHHHhhC
Q 004425 676 MYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 676 ~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+|...|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666665443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.069 Score=58.10 Aligned_cols=180 Identities=12% Similarity=0.027 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHH
Q 004425 532 SWNAMLSAYALHGLGK---GALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACM 607 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 607 (754)
+-+.|++.+.+.++.. +|+-+++.-.. ..| |..+-..+|..|+-.|-...|.+.|+.+.-+ .|.-|...|- +
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~ 513 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-I 513 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-H
Confidence 4567888888888755 45556666555 334 4456677888999999999999999998664 6666543332 2
Q ss_pred HHHHhhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC----CcchHHHHHHHHH
Q 004425 608 VDLLGRAGRLSEAMNLINSS-----PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK----DAGSFILVSNMYA 678 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~ 678 (754)
...+...|++..+...++.. ....+..- ++..-.++|.+..-.+...---.+.-. -..+-.......+
T Consensus 514 ~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e---yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~ 590 (932)
T KOG2053|consen 514 FRRAETSGRSSFASNTFNEHLKFYDSSLKETPE---YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLC 590 (932)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH---HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777776666543 00111111 222223556666554442211111111 1223345556678
Q ss_pred hcCCchHHHHHHHHHhhCCCccCCceeEEEECC--EEEEEecCC
Q 004425 679 GQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDS--KLHHFVASG 720 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~--~~~~~~~~~ 720 (754)
..++.++-.+.++.|+-.......+ |.++.. +.-.|...|
T Consensus 591 ~~~~~~q~~~~~~~~~l~~~e~~I~--w~~L~DNRDl~~~~~w~ 632 (932)
T KOG2053|consen 591 NADRGTQLLKLLESMKLPPSEDRIQ--WVSLSDNRDLNAIPYWD 632 (932)
T ss_pred hCCcHHHHHHHHhccccCcchhhcc--cccccccccccccccCC
Confidence 8899999999998887443333333 665543 444454444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00016 Score=67.87 Aligned_cols=106 Identities=10% Similarity=0.043 Sum_probs=83.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhc
Q 004425 537 LSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRA 614 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 614 (754)
..-+.+.+++++|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+..+. +.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 3457788999999999999999 777 456788888999999999999998888754 5565 56899999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcC
Q 004425 615 GRLSEAMNLINSS-PFSESPLLW-RTLVSVSKLMA 647 (754)
Q Consensus 615 g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g 647 (754)
|++++|++.|++. .+.|+..+| ..|-.+-...+
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 9999999999865 778865554 34433333333
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0012 Score=56.75 Aligned_cols=90 Identities=14% Similarity=-0.006 Sum_probs=78.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCc
Q 004425 606 CMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGML 683 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 683 (754)
....-+...|++++|..+|.-+ -..-++..|..|..+|...++++.|+..|..+..++++|+.++...+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 4455566789999999999855 22237888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh
Q 004425 684 DEAAKVRTTMND 695 (754)
Q Consensus 684 ~~a~~~~~~m~~ 695 (754)
++|...|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999987655
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00045 Score=58.23 Aligned_cols=103 Identities=9% Similarity=0.044 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHH
Q 004425 569 LGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE----SPLLWRTLVSV 642 (754)
Q Consensus 569 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~ 642 (754)
..+...+...|++++|.+.|+.+.....-.+ ....+..++.++.+.|++++|.+.++.+ ...| .+.++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444455555555555555544211101 1223444555556666666666655543 1122 24566777777
Q ss_pred HHhcCChHHHHHHHHHhhccCCCCcchHH
Q 004425 643 SKLMANSKFSILASKRLLDLEPKDAGSFI 671 (754)
Q Consensus 643 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 671 (754)
+...|+.+.|...++++++..|+++....
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 77888888888888888888888765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.1e-05 Score=55.29 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=44.3
Q ss_pred HhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 644 KLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 644 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
...|++++|+..++++++.+|++...+..++.+|.+.|++++|..+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999986544
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00043 Score=65.54 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=88.9
Q ss_pred CCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHhhccCCCCcchHH
Q 004425 597 LRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLM---ANSKFSILASKRLLDLEPKDAGSFI 671 (754)
Q Consensus 597 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 671 (754)
-+-|.+.|..|...|.+.|+...|..-|.+. ...| ++..+..+..++... ....++..++++++.++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3456788999999999999999999888765 3334 688888888777655 3677899999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhCCCccCCc
Q 004425 672 LVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAG 703 (754)
Q Consensus 672 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 703 (754)
.|+..+...|++.+|...|+.|.+.....+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999998866554443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.2e-05 Score=46.25 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHhHHCCC
Q 004425 226 RCVNFMILEYNKAGESEMAFHVFVHLLSSDF 256 (754)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 256 (754)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=2.1e-05 Score=48.28 Aligned_cols=32 Identities=31% Similarity=0.589 Sum_probs=30.7
Q ss_pred HHHhhccCCCCcchHHHHHHHHHhcCCchHHH
Q 004425 656 SKRLLDLEPKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 656 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
++++++++|+|+.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.1e-05 Score=46.30 Aligned_cols=31 Identities=32% Similarity=0.539 Sum_probs=25.2
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhCCC
Q 004425 125 ITWTSLIKGYLDDGDYESVLGIACDMYRSEE 155 (754)
Q Consensus 125 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 155 (754)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00094 Score=57.74 Aligned_cols=153 Identities=14% Similarity=-0.011 Sum_probs=99.1
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHH
Q 004425 539 AYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 539 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 618 (754)
+..+.=+.+....-..+-.+ +.|....-..|..+....|++.+|...|++... --+.-|....-.+..+....++..
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHH
Confidence 33444455555444443333 556666666777778888888888888877766 223444556667777777778888
Q ss_pred HHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 619 EAMNLINSSP-FSE---SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 619 ~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
+|...++++. ..| .+..-..+.+.+...|+...|+..++.++..-|+ +..-...+..+.++|+.++|..-+....
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 8877777651 111 2233345667777778888888888888887777 5566666777778887777776655544
Q ss_pred h
Q 004425 695 D 695 (754)
Q Consensus 695 ~ 695 (754)
+
T Consensus 221 d 221 (251)
T COG4700 221 D 221 (251)
T ss_pred H
Confidence 3
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0018 Score=69.06 Aligned_cols=139 Identities=19% Similarity=0.171 Sum_probs=82.0
Q ss_pred CChhHHHHHHHHHHH--c---CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc
Q 004425 528 RDIVSWNAMLSAYAL--H---GLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL 601 (754)
Q Consensus 528 ~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 601 (754)
.|..+|...+.+... . +....|..+|++.++ ..|+.. .+..+..++... ++..|..
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~~~ 396 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQPLD 396 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCCcc
Confidence 455666666665433 2 236788999999998 678764 343333322211 1111110
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHh---CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINS---SP-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~---~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
.++++.+.+..++ ++ ...++..+..+.-.....|++++|...++++++++|+ ...|..+|.+|
T Consensus 397 ------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~ 463 (517)
T PRK10153 397 ------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVY 463 (517)
T ss_pred ------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 0112222222222 11 2234566666666666678888888888888888884 67788888888
Q ss_pred HhcCCchHHHHHHHHHhhCC
Q 004425 678 AGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 678 ~~~g~~~~a~~~~~~m~~~~ 697 (754)
...|+.++|...+++.....
T Consensus 464 ~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 464 ELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 88888888888887665433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00067 Score=69.27 Aligned_cols=104 Identities=12% Similarity=-0.000 Sum_probs=65.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFS 652 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 652 (754)
+...|++++|+..|+++.+ --+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3444555555555555543 11122344555555555566666666655544 2334 566777788888888888888
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 653 ILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
+..++++++++|+++.....+..+..+.
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888888888888777776664444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0013 Score=59.59 Aligned_cols=129 Identities=14% Similarity=0.111 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHH
Q 004425 530 IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD--DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFAC 606 (754)
Q Consensus 530 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 606 (754)
...+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|..++++... +.| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHH
Confidence 34566677777788888888888888876443332 24677777788888888888888888765 233 3445666
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCC
Q 004425 607 MVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
++.+|...|+...+..-++.. ...+++|...++++++.+|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 677777777766554333221 123677889999999999986 5555555555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.04 Score=53.88 Aligned_cols=251 Identities=17% Similarity=0.135 Sum_probs=167.9
Q ss_pred hHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--cccchHHHHHHHHHHHHhCCCCchhH--HHH
Q 004425 429 EFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSA--SQACLVRGRSLHAYSIKTGYAADVIV--GNA 504 (754)
Q Consensus 429 ~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 504 (754)
-|.+|-.++...+.|+-..|.+.-.+-.+. +..|..-...++.+-. -.|+.+.|++-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 355666666665688888888776655432 3556666666666543 469999999999999762 22211 223
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHH--HHHHHHHHHHh-
Q 004425 505 LITMYAKCGSIDGAFQIFKGISD--RD-IVSWNAMLSAYALHGLGKGALLLFEEMKRE-GFAPDDI--SILGVLQACIY- 577 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~- 577 (754)
|.-.--+.|..+.|...-+.... |. .-.|.+.+...+..|+++.|+++++.-.+. -+.+|.. .-..|+.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33334567888888888877654 32 347888999999999999999999987753 3455553 23334433221
Q ss_pred --cCCHHHHHHHHHHHHHHhCCCCCccHH-HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHH-
Q 004425 578 --SGLSEGGICLFNEIEQIYGLRPILEHF-ACMVDLLGRAGRLSEAMNLINSS-PFSESPLLWRTLVSVSKLMANSKFS- 652 (754)
Q Consensus 578 --~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a- 652 (754)
..+...|...-.+. ..+.|+..-- ..-..+|.+.|++.++-.+++.+ ...|.+.+|..+..+ +.|+....
T Consensus 240 ~ldadp~~Ar~~A~~a---~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~a--r~gdta~dR 314 (531)
T COG3898 240 LLDADPASARDDALEA---NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRA--RSGDTALDR 314 (531)
T ss_pred HhcCChHHHHHHHHHH---hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHh--cCCCcHHHH
Confidence 12344444443333 4677775433 34567889999999999999987 667888887665543 55654333
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 004425 653 ILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 688 (754)
.+-.+++.++.|+|.+....++..-...|++..|..
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 233566778999999999999888888888766654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00046 Score=62.56 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-PF---SES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
.+..++..+...|++++|...+++. .. .++ ...|..+...+...|++++|...++++++..|++...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555555556666666655543 11 111 457778888888899999999999999999999998999999999
Q ss_pred HhcCC
Q 004425 678 AGQGM 682 (754)
Q Consensus 678 ~~~g~ 682 (754)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88877
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00014 Score=53.37 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=51.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 607 MVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
++..+.+.|++++|++.|+++ ...| ++..|..+..++...|++++|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 466788899999999999876 4445 688999999999999999999999999999999974
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0046 Score=53.66 Aligned_cols=98 Identities=15% Similarity=0.236 Sum_probs=47.9
Q ss_pred CCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC--CcchH
Q 004425 596 GLRPILEHFACMVDLLGRAGRLSEAMNLINSS---PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK--DAGSF 670 (754)
Q Consensus 596 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~ 670 (754)
.+.|++.+-..|...+.+.|+..||...|++. .+..|+.....+.++....++...|...++++.+.+|. .+...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34444444445555555555555555555433 22334444455555555555555555555555554443 34444
Q ss_pred HHHHHHHHhcCCchHHHHHHHHH
Q 004425 671 ILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
..++.+|...|++++|+..|+..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHH
Confidence 44555555555555555444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.012 Score=60.92 Aligned_cols=160 Identities=15% Similarity=0.164 Sum_probs=81.9
Q ss_pred HHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHH
Q 004425 405 IYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGR 484 (754)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 484 (754)
.++-.|++.+|.++|.+ +|....|+++|..|.-- -..+-+...|..++-+
T Consensus 641 ~~Ay~gKF~EAAklFk~--------------------~G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKK 690 (1081)
T KOG1538|consen 641 VFAYQGKFHEAAKLFKR--------------------SGHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKK 690 (1081)
T ss_pred HHHhhhhHHHHHHHHHH--------------------cCchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHH
Confidence 34446677777777765 67777777777766531 1122233344444433
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 004425 485 SLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD 564 (754)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 564 (754)
.+..+-.+ +.-++.--.+-..++...|+.++|..+.- .+|-.+-++++-+++-. .+
T Consensus 691 mL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~------------------d~gW~d~lidI~rkld~----~e 746 (1081)
T KOG1538|consen 691 MLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEICG------------------DHGWVDMLIDIARKLDK----AE 746 (1081)
T ss_pred HHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhh------------------cccHHHHHHHHHhhcch----hh
Confidence 33332211 11111111223445556666666655432 23333333333333221 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 004425 565 DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSP 628 (754)
Q Consensus 565 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (754)
..+...+..-+.+...+.-|.++|.+|-. ..+++++....+++++|..+.++.|
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc
Confidence 23444444444455566667777777743 3456777778888888888877764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0033 Score=56.79 Aligned_cols=122 Identities=14% Similarity=0.048 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD--DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACM 607 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 607 (754)
..|..+...+...|++++|+..|++.+.....|. ..++..+...+.+.|++++|...+++... +.|+ ...+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHH
Confidence 4566677777778888888888888876432222 23677777788888888888888877765 2232 3445555
Q ss_pred HHHHh-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 608 VDLLG-------RAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 608 ~~~~~-------~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
..++. +.|++++|.. ..++|...+++++..+|++. ......+...
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~ 164 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGNY---IEAQNWLKIT 164 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCcccH---HHHHHHHHHh
Confidence 55555 3333333322 23456777888888888732 3333334444
Q ss_pred CCc
Q 004425 681 GML 683 (754)
Q Consensus 681 g~~ 683 (754)
|++
T Consensus 165 ~~~ 167 (168)
T CHL00033 165 GRF 167 (168)
T ss_pred cCC
Confidence 443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00046 Score=62.36 Aligned_cols=92 Identities=9% Similarity=-0.044 Sum_probs=69.6
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHH
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINSS-PFSE----SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNM 676 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 676 (754)
..|..++..+...|++++|+..+++. ...| .+.+|..+...+...|+.++|+..++++++++|.+...+..++.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34555666666677777777776654 1222 245788888999999999999999999999999999989999988
Q ss_pred HH-------hcCCchHHHHHHHHH
Q 004425 677 YA-------GQGMLDEAAKVRTTM 693 (754)
Q Consensus 677 ~~-------~~g~~~~a~~~~~~m 693 (754)
|. ..|++++|...+++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 88 888888666666543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.001 Score=53.17 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
|..+...+...|++++|+..+++..+ ..|+. ..+..+...+...|++++|.++++....
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666666666666666665 23332 3444455555555555566555555543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.13 Score=51.61 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=56.5
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 621 MNLINSSPFSE----SPLLWRTLVSV--SKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 621 ~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
+.++++.+++| +...-|.|..| +..+|++.++.-...=+.++.| ++.+|..+|-++....+++||...+..+.
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 34455555554 34455555544 4678999999888888889999 59999999999999999999999998653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00029 Score=53.21 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=50.5
Q ss_pred HHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 640 VSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 640 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
...+...+++++|..+++++++++|+++..+..++.+|...|++++|.+.++...+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567788999999999999999999999999999999999999999999998876543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0025 Score=62.73 Aligned_cols=134 Identities=10% Similarity=0.112 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQA-CIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
.+|-.++....+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|.++|+...+. +..+...+...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999988532 2233344433333 33456777799999999884 5556778889999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
.+.+.|+.+.|..+|++. ..-|. ..+|..++..-...|+.+....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999865 22333 35999999999999999999999999999988844
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.018 Score=57.68 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=104.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC---Ch----hHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004425 504 ALITMYAKCGSIDGAFQIFKGISDR---DI----VSWNAMLSAYAL---HGLGKGALLLFEEMKREGFAPDDISILGVLQ 573 (754)
Q Consensus 504 ~li~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 573 (754)
.++-.|-...+++...++.+.+... ++ ..-....-++.+ .|+.++|+.++..++...-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777788888888777653 11 111123345555 7888888888888776666677777777766
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHH----HHHH---H-----hCCCCC-
Q 004425 574 ACIY---------SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEA----MNLI---N-----SSPFSE- 631 (754)
Q Consensus 574 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A----~~~~---~-----~~~~~p- 631 (754)
.|-. ....++|+..|.+. +.+.|+..+--.++.++...|...+. .++. . +-...+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5432 23467888888877 56667665544555566666643222 2222 1 112223
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 632 -SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 632 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
|--.+.+++.++...||.++|.+++++++.+.|..-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 444457899999999999999999999999988743
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0011 Score=52.49 Aligned_cols=81 Identities=10% Similarity=0.021 Sum_probs=68.7
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHhccCC--------ChHHHHHHHHHHHHHCCCCcHHH
Q 004425 126 TWTSLIKGYLDDGDYESVLGIACDMYRSEE-KFNEHTCSVILEACSLLE--------DRIFGEQIHAFAIKSGFENNVFV 196 (754)
Q Consensus 126 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~~~ 196 (754)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|++.++.. .+-....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334566677777999999999999999999 899999999999987553 34467888999999999999999
Q ss_pred HHHHHHHhHh
Q 004425 197 GTSLISMYFH 206 (754)
Q Consensus 197 ~~~li~~~~~ 206 (754)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.16 Score=50.67 Aligned_cols=121 Identities=16% Similarity=0.079 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004425 501 VGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGL 580 (754)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 580 (754)
+.+..+.-+...|+...|.++-.+..-||-.-|-..+.+|+..++|++-..+-.. +-..+.|...+.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566677788999999998888889999999999999999999877665332 2234778888999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004425 581 SEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVS 641 (754)
Q Consensus 581 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 641 (754)
..+|..+..++ .+..-+..|.++|++.+|.+..-+. .|...+..+..
T Consensus 253 ~~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~ 299 (319)
T PF04840_consen 253 KKEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILK 299 (319)
T ss_pred HHHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHH
Confidence 99998888663 1255678888999999988776553 24444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00047 Score=53.68 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=38.8
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHH
Q 004425 543 HGLGKGALLLFEEMKREGFA-PDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 620 (754)
.|++++|+.+++++.+.... |+...+..+..++.+.|++++|..+++.. ...|. ......++.+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666653221 12333444555666666666666666551 11121 22233445555566666666
Q ss_pred HHHHH
Q 004425 621 MNLIN 625 (754)
Q Consensus 621 ~~~~~ 625 (754)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0015 Score=51.78 Aligned_cols=79 Identities=8% Similarity=-0.073 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHHCCC-CCCcchHHHHHHHHhccCC--------chHHHHHHHHHHHhcCCCChhHHH
Q 004425 229 NFMILEYNKAGESEMAFHVFVHLLSSDF-EPNDYTFTNVISVCYENLG--------VEEGKQLHGLAVKFGVVREISVGN 299 (754)
Q Consensus 229 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~~ 299 (754)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++.- +-+...+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 8999999999999887542 345667889999999999999999
Q ss_pred HHHHHHHh
Q 004425 300 AIVTMYGK 307 (754)
Q Consensus 300 ~li~~~~~ 307 (754)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00027 Score=52.43 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=38.7
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHH
Q 004425 613 RAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSN 675 (754)
Q Consensus 613 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 675 (754)
..|++++|+++++++ ...| +..++..+..++...|++++|...++++...+|+++..+..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456666666666554 2223 56666667777777777777777777777777776555555543
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0069 Score=64.75 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhhcc--CCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 649 SKFSILASKRLLDL--EPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 649 ~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
...+.+..+++.++ +|.++..|..++-.+...|++++|...+++..+...
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p 451 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM 451 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 44566666676664 777788899999999999999999999999877653
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0004 Score=45.92 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHH
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSN 675 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 675 (754)
.+|..+..++...|+.++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999999988875
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0029 Score=64.59 Aligned_cols=118 Identities=8% Similarity=0.025 Sum_probs=87.3
Q ss_pred CCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC------CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHH
Q 004425 191 ENNVFVGTSLISMYFHSGCFREAENVFRGLAYK------DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFT 264 (754)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 264 (754)
..+......+++......+++.+..++-+.... -..+..++|+.|.+.|..+.++++++.=...|+-||.+||+
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344455555566666666666666666544421 12245688888888888899999988888899999999999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 004425 265 NVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKH 308 (754)
Q Consensus 265 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 308 (754)
.||+.+.+.|++..|.++..+|...+...+..++..-+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888877777777766666665554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0011 Score=66.84 Aligned_cols=65 Identities=14% Similarity=-0.081 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS---FILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
++..|+.+..++...|++++|+..++++++++|++..+ |++++.+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999999998854 999999999999999999999988764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0043 Score=51.35 Aligned_cols=86 Identities=16% Similarity=0.088 Sum_probs=57.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC---CcchHHHHHHHHH
Q 004425 607 MVDLLGRAGRLSEAMNLINSS---PFSE--SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK---DAGSFILVSNMYA 678 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 678 (754)
+..++-..|+.++|+.++++. +..+ -...+-.+...++..|+.++|+.++++.++..|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555566666666666543 1111 1335556777777778888888888888877777 6666777777888
Q ss_pred hcCCchHHHHHHHH
Q 004425 679 GQGMLDEAAKVRTT 692 (754)
Q Consensus 679 ~~g~~~~a~~~~~~ 692 (754)
..|+++||.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888877643
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0025 Score=62.75 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=92.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSK 650 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 650 (754)
-...+.+.|++..|..-|+++..-.... +.-+.++..... . .-..++..|..++.+.+++.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~--------------~~~~~ee~~~~~-~----~k~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYR--------------RSFDEEEQKKAE-A----LKLACHLNLAACYLKLKEYK 274 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhcc--------------ccCCHHHHHHHH-H----HHHHHhhHHHHHHHhhhhHH
Confidence 4557778888888888888776532211 111112222111 1 12335667888888899999
Q ss_pred HHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHH
Q 004425 651 FSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIY 730 (754)
Q Consensus 651 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (754)
.|+....++++++|+|.-+.+..+.+|...|+++.|+..|+++.+. .|..++|.
T Consensus 275 ~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------------------------~P~Nka~~ 328 (397)
T KOG0543|consen 275 EAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------------------------EPSNKAAR 328 (397)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------------------------CCCcHHHH
Confidence 9999999999999999999999999999999999999999988662 45667888
Q ss_pred HHHHHHHHHHHH
Q 004425 731 SKLDLLNDEMKL 742 (754)
Q Consensus 731 ~~l~~l~~~~~~ 742 (754)
++|..+.+++++
T Consensus 329 ~el~~l~~k~~~ 340 (397)
T KOG0543|consen 329 AELIKLKQKIRE 340 (397)
T ss_pred HHHHHHHHHHHH
Confidence 888888777765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0099 Score=51.11 Aligned_cols=89 Identities=9% Similarity=-0.021 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLL 611 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 611 (754)
.-.+..-+...|++++|..+|+-+.. +.|... -|..|..+|-..|++++|+..|..... .. +-+...+-.+..++
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-IK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CCCchHHHHHHHHH
Confidence 33444445556666666666666655 445443 444455555555666666666665543 11 12234444455555
Q ss_pred hhcCCHHHHHHHHH
Q 004425 612 GRAGRLSEAMNLIN 625 (754)
Q Consensus 612 ~~~g~~~~A~~~~~ 625 (754)
...|+.+.|++-|+
T Consensus 114 L~lG~~~~A~~aF~ 127 (157)
T PRK15363 114 LACDNVCYAIKALK 127 (157)
T ss_pred HHcCCHHHHHHHHH
Confidence 55555555555544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.039 Score=52.83 Aligned_cols=171 Identities=11% Similarity=0.013 Sum_probs=107.4
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--CChh----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHH
Q 004425 505 LITMYAKCGSIDGAFQIFKGISD--RDIV----SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD--ISILGVLQACI 576 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 576 (754)
....+.+.|++++|.+.|+.+.. |+.. ..-.++.+|.+.+++++|+..+++.++ ..|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHh
Confidence 34445667888888888888754 3321 123466778888999999999999888 44443 34444444433
Q ss_pred h--cC---------------C---HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 004425 577 Y--SG---------------L---SEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLW 636 (754)
Q Consensus 577 ~--~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 636 (754)
. .+ + ..+|...|+.+++. |=...-..+|...+..+...- ..--
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~l-a~~e 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRL-AKYE 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHH-HHHH
Confidence 2 11 1 12344445555442 222233444544433321000 0011
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhccCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 637 RTLVSVSKLMANSKFSILASKRLLDLEPKD---AGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 637 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
......|.+.|++.-|..-++.+++.-|+. ..+...++.+|...|..++|..+.+.+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 145566888899999999999999988874 4577888899999999999999887653
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0097 Score=60.89 Aligned_cols=119 Identities=14% Similarity=0.059 Sum_probs=72.3
Q ss_pred CCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CChhHH
Q 004425 460 MEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKT--GYAADVIVGNALITMYAKCGSIDGAFQIFKGISD----RDIVSW 533 (754)
Q Consensus 460 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 533 (754)
...+...+..++..+.+..+++.+..++.+.... ....-..+..++|..|.+.|..+.+..+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666666666666666666666666543 2222233444666666666666666666655433 666667
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004425 534 NAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYS 578 (754)
Q Consensus 534 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 578 (754)
|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777776666666655555556655555555543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.15 Score=50.60 Aligned_cols=162 Identities=13% Similarity=0.036 Sum_probs=97.1
Q ss_pred HHhCCCHHHHHHHHhcCCCCChh-hHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHH
Q 004425 406 YAKGGDLKSARMLLDGFSCKYTA-EFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGR 484 (754)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 484 (754)
+.-.|+.++|...--.+..-|.. .+-..+.+.+-...++.+.|...|++-+.. .|+...-..+- ...
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~----------~~~ 246 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSAS----------MMP 246 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHh----------hhH
Confidence 44456666665554444433332 222333333332266777777777776644 45543221111 111
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-------CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004425 485 SLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD-------RDIVSWNAMLSAYALHGLGKGALLLFEEMK 557 (754)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 557 (754)
..+......| +...+.|.+..|.+.|.+... ++...|.....+..+.|+.++|+.-.++..
T Consensus 247 k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 247 KKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 1222222222 446778889999998887753 344567777777888899999999888887
Q ss_pred HcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 558 REGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 558 ~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
. +.|... .|..-..++...+.|++|.+.|+...+
T Consensus 315 ~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 315 K--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred h--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 555443 455555567778889999999988865
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.016 Score=57.36 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 569 LGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 569 ~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
..+...+.+.|++++|.++|+++..
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3333444444444444444444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00086 Score=49.86 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=49.9
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHhhccCC
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMA-NSKFSILASKRLLDLEP 664 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 664 (754)
...|..++..+...|++++|+..|++. ...| ++.+|..+..++...| +.++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345666777777777777777777654 3344 5788888999999999 79999999999999988
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0032 Score=60.64 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDLEPKD---AGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
..+..+..++...|++++|...|+++++..|++ +.++..++.+|...|++++|.++++++.+
T Consensus 181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 181 NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455566666666666666666666665553 34555556666666677777666665544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.36 Score=48.12 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=60.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 004425 400 TALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQAC 479 (754)
Q Consensus 400 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 479 (754)
+.-+.-+...|+...|.++..+..-++-..|-..+.+++. .+++++-..+... +-++..|..++.+|.+.|+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~--~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAE--NKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3334445556666677777666666666666666777776 6666655544321 1123556666666666666
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 480 LVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 480 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
..+|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 66666555541 113445666666666666554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.59 Score=50.20 Aligned_cols=110 Identities=21% Similarity=0.170 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004425 500 IVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSG 579 (754)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 579 (754)
.+.+--+.-+...|+-.+|.++-.+.+-||-..|---+.+++..+++++-+++-+.+. ...-|.-...+|.+.|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 3344455566777888899999888888888888888888888888887666555433 1345666788899999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHH
Q 004425 580 LSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLIN 625 (754)
Q Consensus 580 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 625 (754)
+.++|.+++-+.. |. .-.+.+|.+.|++.+|.++--
T Consensus 759 n~~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 759 NKDEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cHHHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHHHHH
Confidence 9999988886652 22 156788888888888877653
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0022 Score=62.54 Aligned_cols=128 Identities=13% Similarity=0.033 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH---HHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-------CCC-CCHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNE---IEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-------PFS-ESPL 634 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~-p~~~ 634 (754)
.|..|...|.-.|+++.|+...+. +.+++|-+.. ...+..+..++.-.|+++.|.+.++.. +.+ -...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455566666667889999877664 2233555443 356788899999999999999888743 211 1345
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhccC------CCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 635 LWRTLVSVSKLMANSKFSILASKRLLDLE------PKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 635 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
...+|.+.|....+++.|+....+=+.+. .....++..|+++|...|..++|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56678888888888899988876654432 2245688999999999999999998776553
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0051 Score=55.41 Aligned_cols=72 Identities=8% Similarity=0.027 Sum_probs=46.1
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccC----------------CChHHHHHHHHHHHHHCCCCcHHHHHHHH
Q 004425 138 GDYESVLGIACDMYRSEEKFNEHTCSVILEACSLL----------------EDRIFGEQIHAFAIKSGFENNVFVGTSLI 201 (754)
Q Consensus 138 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~~~~~~m~~~g~~~~~~~~~~li 201 (754)
|..+=....+..|.+.|+.-|..+|+.||+.+=+. .+-+-|.+++++|...|+-||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 33344444445555555555555555555444322 24456788888999999999999999988
Q ss_pred HHhHhcCC
Q 004425 202 SMYFHSGC 209 (754)
Q Consensus 202 ~~~~~~g~ 209 (754)
+.+++.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 88877654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.006 Score=54.95 Aligned_cols=89 Identities=12% Similarity=0.214 Sum_probs=65.4
Q ss_pred CCCchhHHHHHHHHHh-----cCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccC----------------ChHHHH
Q 004425 323 ERNLISWTALISGYVR-----SGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCS----------------NLELGL 381 (754)
Q Consensus 323 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 381 (754)
.+|-.+|..+|..|.+ .|+.+=....+..|.+-|+.-|..+|+.||..+=+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455555555555543 3666666677777778888888888888887765422 356788
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHhCCC
Q 004425 382 QLHGFAIKHGYLSDVRLGTALVDIYAKGGD 411 (754)
Q Consensus 382 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 411 (754)
+++++|...|+.||..++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999876544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0068 Score=59.64 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 004425 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR-AGRLSEAMNLINSS--PFSESPLLWRTLVSV 642 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 642 (754)
.+|..++..+.+.+..+.|..+|.++.+ .-..+...|...+.+-.+ .++.+.|.++|+.. .+..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4678888999999999999999999975 223345566666666455 45666699999866 344588999999999
Q ss_pred HHhcCChHHHHHHHHHhhccCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 643 SKLMANSKFSILASKRLLDLEPKDA---GSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 643 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+...|+.+.|..++++++..-|.+. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999877644 57888888888999999999999988764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.018 Score=47.70 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=66.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHh
Q 004425 536 MLSAYALHGLGKGALLLFEEMKREGFAPDD--ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLG 612 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 612 (754)
+..++-..|+.++|+.+|++.+..|+.... ..+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 456677889999999999999998877653 3677788889999999999999998876421111 1222334556777
Q ss_pred hcCCHHHHHHHHHh
Q 004425 613 RAGRLSEAMNLINS 626 (754)
Q Consensus 613 ~~g~~~~A~~~~~~ 626 (754)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888877643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0021 Score=48.41 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=52.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 609 DLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
..|.+.+++++|.+.++.+ ...| ++..|......+...|++++|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4677888888888888766 3344 688888888999999999999999999999999877665444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.11 Score=54.25 Aligned_cols=234 Identities=11% Similarity=0.100 Sum_probs=139.1
Q ss_pred hHHHHHHHHhccCCchHHHH--HHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhc
Q 004425 262 TFTNVISVCYENLGVEEGKQ--LHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRS 339 (754)
Q Consensus 262 t~~~ll~~~~~~~~~~~a~~--~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 339 (754)
.|++.=++|.+.++..--+- -++++.+.|-.|+... +...++-.|.+.+|-++|.+ +
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~ 658 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------S 658 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------c
Confidence 34444455555555433322 2456677777777654 33446667888888888764 4
Q ss_pred CChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHH
Q 004425 340 GHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLL 419 (754)
Q Consensus 340 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 419 (754)
|.-..|+++|.+|+-- -...-+...|.-++-..+.+.--+ +.-+..--.+-..++...|+.++|..+.
T Consensus 659 G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~ 726 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEIC 726 (1081)
T ss_pred CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhh
Confidence 6666777777666421 112334445555444444433222 1122222234455666778888776664
Q ss_pred hcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCch
Q 004425 420 DGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADV 499 (754)
Q Consensus 420 ~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 499 (754)
-. +|-.+-+.++-+++-.. +..+...+...+.+...+..|-++|..+-..
T Consensus 727 ~d--------------------~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ 776 (1081)
T KOG1538|consen 727 GD--------------------HGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGDL------ 776 (1081)
T ss_pred hc--------------------ccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhccH------
Confidence 32 55555566555554322 2334444444555666777788888777542
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC--CChh-----------HHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 004425 500 IVGNALITMYAKCGSIDGAFQIFKGISD--RDIV-----------SWNAMLSAYALHGLGKGALLLFEEMKREGF 561 (754)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 561 (754)
.+++++....++|.+|..+-+..++ +|+. -+..--.+|.+.|+-.+|..+++++....+
T Consensus 777 ---ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 777 ---KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred ---HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 3577888888999999999888875 4442 223344678888999999999998875443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0072 Score=49.02 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=75.2
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc----chHHHHHHHHHhcCC
Q 004425 609 DLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA----GSFILVSNMYAGQGM 682 (754)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 682 (754)
-++...|+++.|++.|.+. ..-| .+..||.-..+++.+|+.++|..-+++++++.-+-. .+|+..+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567888999999888654 3444 688999999999999999999999999999854422 368899999999999
Q ss_pred chHHHHHHHHHhhCCCc
Q 004425 683 LDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 683 ~~~a~~~~~~m~~~~~~ 699 (754)
-+.|..-|+...+.|-+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 99999999988776654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.5 Score=46.71 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-----HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHH-hCCCCCc--cH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPD-----DI-SILGVLQACIYSGLSEGGICLFNEIEQI-YGLRPIL--EH 603 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~--~~ 603 (754)
+..+...+.+.|++++|+++|++....-...+ .. .|...+-++...|++..|.+.+++.... .++..+. ..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 44566778888899999999888876433221 11 3344455667778888888888887432 1233332 34
Q ss_pred HHHHHHHHhh--cCCHHHHHHHHHhC
Q 004425 604 FACMVDLLGR--AGRLSEAMNLINSS 627 (754)
Q Consensus 604 ~~~l~~~~~~--~g~~~~A~~~~~~~ 627 (754)
...|++++-. ...+++|+.-|+.+
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 5566777643 44677777777776
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.63 Score=46.97 Aligned_cols=352 Identities=13% Similarity=0.067 Sum_probs=165.6
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcC
Q 004425 265 NVISVCYENLGVEEGKQLHGLAVKFGVV----REISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSG 340 (754)
Q Consensus 265 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 340 (754)
..+.++...|.+.+++.+++.+...-++ -+..+|+.++-++++.--++.- +.+...=..-|--||-.|.+.=
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~----e~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELK----ESMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHH----HhcccccChHHHHHHHHHHHHH
Confidence 4556667788888888887777665443 6778888777666654222211 1111111122333444443221
Q ss_pred ChhHHHHHHHHhHhcCcccChhhHHHHHHHhccc--CChHHHHHHHHHHHHhCCCcchh-HHHHHHHHHHhCCCHHHHHH
Q 004425 341 HGGKAINGFLEFLDLGICCDSSCLATVIDGCSVC--SNLELGLQLHGFAIKHGYLSDVR-LGTALVDIYAKGGDLKSARM 417 (754)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~ 417 (754)
+ .++.-.-..+.|....+..++....-. ..+.--.++++.-...-+.|+-. +...|+..+.+ +.+++..
T Consensus 209 ~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~ 280 (549)
T PF07079_consen 209 H------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGH 280 (549)
T ss_pred H------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHH
Confidence 1 111100011234344444444332211 12222334444444444455433 23344444443 4444444
Q ss_pred HHhcCC--------CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHh-ccc---
Q 004425 418 LLDGFS--------CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTF-------SRLLSLSA-SQA--- 478 (754)
Q Consensus 418 ~~~~~~--------~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-------~~ll~~~~-~~~--- 478 (754)
+.+.+. +.=..++..++...++ .++..+|-+.+.-+.-- .|+...- ..+-+..+ ...
T Consensus 281 ~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk--~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~T 356 (549)
T PF07079_consen 281 FCEAIASSKIEKLKEELIDRFGNLLSFKVK--QVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYT 356 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHH
Confidence 443332 2233467777777777 78888887777666533 4443211 11112222 111
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHH---HHHHhcCC-HHHHHHHHhccCC---CChhHHHHHH----HHHHHc---C
Q 004425 479 CLVRGRSLHAYSIKTGYAADVIVGNALI---TMYAKCGS-IDGAFQIFKGISD---RDIVSWNAML----SAYALH---G 544 (754)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~~---g 544 (754)
++..-..+|..+....+..- .....|+ .-+-+.|. -++|.++++.+.+ -|..+-|.+. .+|.+. .
T Consensus 357 klr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~ 435 (549)
T PF07079_consen 357 KLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMH 435 (549)
T ss_pred HHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhh
Confidence 22223334444433332111 1111111 12223333 6677777766643 3443333221 122211 1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHH----HHHHHH--HHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHH
Q 004425 545 LGKGALLLFEEMKREGFAPDDIS----ILGVLQ--ACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 545 ~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 618 (754)
...+-+.+-+-..+.|+.|-.+. -+.|.+ -+...|++.++.-+-..+ ..+.|++.+|..++-++....+++
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL---~~iaPS~~~~RLlGl~l~e~k~Y~ 512 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL---TKIAPSPQAYRLLGLCLMENKRYQ 512 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH---HHhCCcHHHHHHHHHHHHHHhhHH
Confidence 22333333334446677664432 222222 234567777776655555 247788888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHH
Q 004425 619 EAMNLINSSPFSESPLLWRT 638 (754)
Q Consensus 619 ~A~~~~~~~~~~p~~~~~~~ 638 (754)
||.+++.++| |+..+|++
T Consensus 513 eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 513 EAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHhCC--CchhhHHH
Confidence 8888888875 45444443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.93 Score=48.20 Aligned_cols=126 Identities=16% Similarity=0.203 Sum_probs=70.3
Q ss_pred cCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC----cchHHHHHHHHhccCCchHHHHH
Q 004425 207 SGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPN----DYTFTNVISVCYENLGVEEGKQL 282 (754)
Q Consensus 207 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~ 282 (754)
.|++++|++++-++.++|.. |..+.+.|++-...++++. .|-..| ...|+.+-..++....+++|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888877753 4555566666666555532 111111 23455566666666666666666
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHH
Q 004425 283 HGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFL 350 (754)
Q Consensus 283 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (754)
+..-... ...+.+|.+..++++-+.+-..+++ |....-.|...+.+.|.-++|.+.|-
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHH
Confidence 5442211 2344455555555555555555443 33344455666666676666666554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.01 Score=58.08 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=29.0
Q ss_pred HHhcCChhHHHHHHHHhHhcCcc---cChhhHHHHHHHhcccCChHHHHHHHH
Q 004425 336 YVRSGHGGKAINGFLEFLDLGIC---CDSSCLATVIDGCSVCSNLELGLQLHG 385 (754)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~ 385 (754)
+|+.|+....+.+|+..++.|-. .=...|..+-.+|.-.+++++|.+++.
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 56666666666666666665521 112334455555666666777766654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.11 Score=48.12 Aligned_cols=168 Identities=8% Similarity=-0.032 Sum_probs=110.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC--Ch--------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004425 502 GNALITMYAKCGSIDGAFQIFKGISDR--DI--------VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGV 571 (754)
Q Consensus 502 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 571 (754)
+++|...+.-...+++-...++.-..| .+ ..-+.++..+.-+|.+.-.+.++++.++...+-+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 345555555544455555555443322 12 23345667777788888899999999986655566777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhC----CCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHh
Q 004425 572 LQACIYSGLSEGGICLFNEIEQIYG----LRPILEHFACMVDLLGRAGRLSEAMNLINSSPFS-E-SPLLWRTLVSVSKL 645 (754)
Q Consensus 572 l~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~ 645 (754)
.+.-.+.|+.+.|..+|+...+..+ +.-..-+...+...|.-++++.+|...+.+.+.. | |+...|+-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888899999999999997765322 2222233334555666677888888888777432 2 45555554444455
Q ss_pred cCChHHHHHHHHHhhccCCCCcch
Q 004425 646 MANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
.|+...|++..+.+.+..|.....
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchh
Confidence 688888888888888888874443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.027 Score=54.38 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=41.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS----PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
+.-++.+|...|++++|...|+++ |..| .+..|..++..+...|+.+.|...++++++..|++..
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 334555555555555555555443 2222 2445555666777888899999999999988888653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.023 Score=56.26 Aligned_cols=138 Identities=12% Similarity=-0.048 Sum_probs=100.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC
Q 004425 536 MLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG 615 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 615 (754)
-.+.|.+.|++..|...|++.+.. -.... .-+.++...... . -...+..+.-+|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~~~~-----------~~~~ee~~~~~~-~--------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LEYRR-----------SFDEEEQKKAEA-L--------KLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hhccc-----------cCCHHHHHHHHH-H--------HHHHhhHHHHHHHhhh
Confidence 357889999999999999987751 11111 111122221111 1 1224667888889999
Q ss_pred CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHH-HHHHHH
Q 004425 616 RLSEAMNLINSS-PF-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEA-AKVRTT 692 (754)
Q Consensus 616 ~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 692 (754)
++.+|++..++. .. ++|.-..---..+|...|+++.|+..|+++++++|+|..+-..|+.+-.+..+..+. .++|..
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988866 23 346777777788999999999999999999999999999999999888777766665 778888
Q ss_pred Hhh
Q 004425 693 MND 695 (754)
Q Consensus 693 m~~ 695 (754)
|-.
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 844
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.69 E-value=1.1 Score=47.27 Aligned_cols=181 Identities=14% Similarity=0.046 Sum_probs=123.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISDRDI---VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQA 574 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 574 (754)
+..+|...++.-.+.|+.+.+.-.|+...-|-. ..|--.+.-....|+.+-|-.++.+..+--.+-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 566777788888888999999998888765422 23444444444558888888777776654333333333223334
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHH----HH-HHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYGLRPIL-EHFACMVDLLGRAGRLSEAM---NLINSS-PFSESPLLWRTL----VS-VSK 644 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l----~~-~~~ 644 (754)
+...|+.+.|..+++.+.++ . |+. +.-.--+....+.|..+.+. +++... +.+-+......+ .. -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 56788999999999999884 3 553 44445667778899998888 555543 222222222222 22 234
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcC
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQG 681 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 681 (754)
..++.+.|..++.++.+..|++...|..+.++....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5689999999999999999999999999999877666
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.034 Score=48.74 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=71.2
Q ss_pred HHhcCCHHHHHHHHHHHHHHhC--CCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYG--LRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFS 652 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 652 (754)
....|+.+.+...++++..-+. +-|+... ..........+++. -......++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 3455677777777777655321 1111111 11222333333332 123456677888899999999
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 653 ILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
...+++++..+|-+...|..+..+|...|+..+|.++|++++.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998853
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.56 Score=44.96 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=26.7
Q ss_pred HHhCCCHHHHHHHHhcCCCCCh---hhH---HHHHHHHhhhhcCCHHHHHHHHHHHHHc
Q 004425 406 YAKGGDLKSARMLLDGFSCKYT---AEF---NAILSGFMEKIADDEEDVMVLFSQQRLA 458 (754)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~---~~~---~~li~~~~~~~~~~~~~A~~~~~~m~~~ 458 (754)
+.+.|++++|.+.|+.+....+ ..- -.+..++.+ .+++++|...|++..+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~--~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK--NADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHh
Confidence 3445666666666665542111 111 122334455 66777777777766654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0043 Score=47.40 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhcc----CCC---CcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDL----EPK---DAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
.+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666677777777777777777777653 122 24578899999999999999999988753
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.3 Score=45.49 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=85.8
Q ss_pred HHHHHhcCCHHHHHHHHhccCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHh
Q 004425 506 ITMYAKCGSIDGAFQIFKGISD--RD----IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD--ISILGVLQACIY 577 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~ 577 (754)
...+...|++++|...|+.+.. |+ ..+.-.++.++.+.|++++|...+++.++. -|+. ..+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 3445566777777777776643 22 123445566666777777777777776663 2332 222222222221
Q ss_pred cCCH-------------HHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004425 578 SGLS-------------EGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSK 644 (754)
Q Consensus 578 ~g~~-------------~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 644 (754)
-... .+|...|+ .++.-|=......+|...+..+...- ..--..+...+.
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~----------------~li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~ 152 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFE----------------ELIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHH----------------HHHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHH----------------HHHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 1111 12222222 23333333334444444333321000 001113456788
Q ss_pred hcCChHHHHHHHHHhhccCCCCc---chHHHHHHHHHhcCCchHHHH
Q 004425 645 LMANSKFSILASKRLLDLEPKDA---GSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 688 (754)
+.|++..|..-++.+++.-|+.+ .+...++..|.+.|..+.|..
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 89999999999999999999854 467788888999999885543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.19 Score=46.57 Aligned_cols=141 Identities=6% Similarity=-0.054 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHH-----
Q 004425 327 ISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTA----- 401 (754)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----- 401 (754)
...+.++..+.-.|.+.-.+.++.+.++.....++.....+.+...+.|+.+.|...|+...+..-..+....+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667777778888888899999998877777888888888888899999999999998877433333333333
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004425 402 LVDIYAKGGDLKSARMLLDGFSCK---YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLL 471 (754)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 471 (754)
....|.-..++..|...|++++.. +.+..|.=.-.... .|+..+|++..+.|.+. .|...+-++++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 334455677888888888877744 33333332223333 67888899888888875 56555544443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.062 Score=45.43 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=61.5
Q ss_pred HHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc---hHHHHHHHHHhc
Q 004425 609 DLLGRAGRLSEAMNLINSS----PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG---SFILVSNMYAGQ 680 (754)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~ 680 (754)
....+.|++++|.+.|+.+ |..| ...+-..|+.++...|++++|...+++.++++|.++. ++...|-++..+
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 3344677777777777765 3333 3556667888999999999999999999999998765 455666566665
Q ss_pred CC---------------chHHHHHHHHHhh
Q 004425 681 GM---------------LDEAAKVRTTMND 695 (754)
Q Consensus 681 g~---------------~~~a~~~~~~m~~ 695 (754)
.. ..+|...|+.+..
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 54 5566666666544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.33 E-value=2 Score=46.35 Aligned_cols=136 Identities=7% Similarity=-0.148 Sum_probs=68.7
Q ss_pred hCCCCCChhhHHH-----HHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCC---HhHHHHHhccCCC-
Q 004425 152 RSEEKFNEHTCSV-----ILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGC---FREAENVFRGLAY- 222 (754)
Q Consensus 152 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~- 222 (754)
.-|++.+..-|.. +++-+...+.+..|.++-..+-..-... ..+|.....-+.+..+ -+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4466655555544 3455555566666666655543221111 4555555555555422 2223333333333
Q ss_pred -CCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCC----CCCcchHHHHHHHHhccCCchHHHHHHHHHHH
Q 004425 223 -KDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDF----EPNDYTFTNVISVCYENLGVEEGKQLHGLAVK 288 (754)
Q Consensus 223 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 288 (754)
.+-++|..+.+..-..|+++-|..+++.=...+- -.+..-+...+.-+...|+.+....++-++.+
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 3455666666666677777777766654222211 11223344555555566666655555554443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.057 Score=54.98 Aligned_cols=117 Identities=13% Similarity=0.109 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHH-HcCCCCCHH-HHHHHHHHHHhc---------CCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHhh
Q 004425 546 GKGALLLFEEMK-REGFAPDDI-SILGVLQACIYS---------GLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLGR 613 (754)
Q Consensus 546 ~~~A~~~~~~m~-~~g~~p~~~-t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 613 (754)
.+.|+.+|.+.. ...+.|+.. .|..+..++... ....+|.+.-++..+ +.| |......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 566777888877 222667654 444444433221 112233333333332 222 22333344444444
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 614 AGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 614 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
.|+++.|..+|++. ...|| ..+|......+...|+.++|.+.++++++++|.
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 44455555555443 23332 444444444444555555555555555555554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.21 E-value=2.6 Score=46.26 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=70.5
Q ss_pred HHHHHHhHhcCCHhHHHHHhccCCCCCcch---HHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccC
Q 004425 198 TSLISMYFHSGCFREAENVFRGLAYKDVRC---VNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENL 274 (754)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 274 (754)
..-++.+++...++-|..+-+.-....... .-.-.+.+-+.|++++|..-|-+-... +.| ..+|.-+....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 344566666666777776665433221111 111223455778888888877665432 222 23455555555
Q ss_pred CchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccC
Q 004425 275 GVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAIS 322 (754)
Q Consensus 275 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 322 (754)
.+.+-..+++.+.+.|+.. ...-..|+.+|.+.++.++-.++.+...
T Consensus 412 ~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 6666667777777777643 3344677888888888887777766654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.2 Score=42.42 Aligned_cols=193 Identities=17% Similarity=0.154 Sum_probs=118.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004425 499 VIVGNALITMYAKCGSIDGAFQIFKGIS-----DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQ 573 (754)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 573 (754)
...+......+...+.+..+...+.... ......+......+...+++.++...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3445555666666677776666666543 22334555566666666777777777777766333321 11222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHHhCCCC----CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHh
Q 004425 574 -ACIYSGLSEGGICLFNEIEQIYGLRP----ILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE--SPLLWRTLVSVSKL 645 (754)
Q Consensus 574 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~ 645 (754)
++...|++++|...+..... ..| ....+......+...++.++|...+.+. ...+ ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 66777777777777777633 222 2233334444456677777777777654 2222 25666777777777
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 646 MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.++.+.|...+.+++...|.....+..++..+...|.++++...+++...
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888888888888888777566666777776666777777777766544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0072 Score=46.15 Aligned_cols=30 Identities=10% Similarity=0.038 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLDL 662 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 662 (754)
..++..+...+...|+.++|+..+++++++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555666666666666666666666543
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.9 Score=43.53 Aligned_cols=133 Identities=13% Similarity=0.131 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHH-HHH
Q 004425 530 IVSWNAMLSAYALHGLGKGALLLFEEMKREG-FAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHF-ACM 607 (754)
Q Consensus 530 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 607 (754)
...|...+++-.+..-.+.|..+|-+..+.| +.++...+++++.-++. |+..-|-.+|+.-... + ||.-.| .-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f-~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--F-PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--C-CCchHHHHHH
Confidence 3567777777777777788888888888777 44566677777765554 6677777787765442 2 333333 356
Q ss_pred HHHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 608 VDLLGRAGRLSEAMNLINSS--PFSES--PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
...+.+-++-+.|..+|++. .+..+ ..+|..++..-...|+...+..+-++..++-|+.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 66777788888888888743 11122 4567777777777788888888778888877774
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.71 Score=45.07 Aligned_cols=122 Identities=14% Similarity=0.058 Sum_probs=58.8
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHhcCCHHHHHHHHhccC-------CCChh------
Q 004425 470 LLSLSASQACLVRGRSLHAYSIKTGY-----AADVIVGNALITMYAKCGSIDGAFQIFKGIS-------DRDIV------ 531 (754)
Q Consensus 470 ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~------ 531 (754)
+-.++...+.++.+.+.|+.+.+... -....++-.|...|.+..++++|.-+..+.. -.|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44555566667777777666654311 1234556666666666666666554433321 12221
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKR----EGFAPDD-ISILGVLQACIYSGLSEGGICLFNEI 591 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 591 (754)
+.-.|..++...|...+|.+..++..+ .|-+|-. .....+.+.|...|+.+.|..-|+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 112233445555555555555555432 2222211 12333444455555555555444443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.072 Score=44.65 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------HHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 004425 565 DISILGVLQACIYSGLSEGGICLFNEIE--------------QIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--- 627 (754)
Q Consensus 565 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 627 (754)
..++..++.++++.|+++....+.+..- ......|+.....+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3445555555555555555555554431 01233455566666666666666666666666543
Q ss_pred -CCCCCHHHHHHHHHHHHh
Q 004425 628 -PFSESPLLWRTLVSVSKL 645 (754)
Q Consensus 628 -~~~p~~~~~~~l~~~~~~ 645 (754)
+++-+...|..|+.-+..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 333346666666654443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.96 E-value=4.2 Score=46.57 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=26.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSP 628 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (754)
.+.+|...|+|++|..+..++.. +-.--..+-..|+.-+..+++.-||-++..+..
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 34455555555555555544422 111111222455555566666666665555543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.049 Score=51.30 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 631 ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK---DAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
|+...| |+.++...|++++|...|..+..-.|+ -++.+.-|+.+..+.|+.++|..+++++..+
T Consensus 178 ~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 178 PNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred chhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344444 666666777777777777777666555 3456777777777777777777777766554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.78 Score=42.72 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPDD--ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILE-HFACMVD 609 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~ 609 (754)
+-.....+...|++.+|+..|+++...-..... .....+..++.+.|++++|...+++..+.+.-.|... .+-.++.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 334556677788899999999888875322211 2556677788888888888888888877554444321 1111111
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc-----------------hHHH
Q 004425 610 LLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG-----------------SFIL 672 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~ 672 (754)
++... ... .+ ...+..+....|...++.+++..|++.- .-..
T Consensus 88 ~~~~~--~~~---~~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 88 SYYKQ--IPG---IL----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp HHHHH--HHH---HH-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--Ccc---ch----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 000 00 0011223345566666666666666432 2445
Q ss_pred HHHHHHhcCCchHHHHHHHHHhh
Q 004425 673 VSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++..|.+.|.|..|..-++.+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 67889999999999999998765
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.27 Score=46.85 Aligned_cols=119 Identities=13% Similarity=0.062 Sum_probs=81.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCh
Q 004425 573 QACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRT---LVSVSKLMANS 649 (754)
Q Consensus 573 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 649 (754)
......|+..+|...|+..... .+-+.+.-..|+.+|...|+.++|..++..+|..-...-|.. -+....+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3455667888888888887662 233356666788888888888888888888866544444433 22333333333
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 650 KFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 650 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
.+.. .+++-+..+|+|...-..|+..|...|+.++|.+.+=.+.
T Consensus 220 ~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 220 PEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3332 3455667789999999999999999999999988765553
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.8 Score=41.12 Aligned_cols=217 Identities=13% Similarity=0.032 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcccchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004425 445 EEDVMVLFSQQRLAGME-PDPVTFSRLLSLSASQACLVRGRSLHAYSIKT-GYAADVIVGNALITMYAKCGSIDGAFQIF 522 (754)
Q Consensus 445 ~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 522 (754)
...+...+......... .....+......+...+.+..+...+...... ........+..+...+...+.+..+...+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444444444433211 12355556666666777777776666666553 23445555666667777777788888888
Q ss_pred hccCC--CCh-hHHHHHHH-HHHHcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004425 523 KGISD--RDI-VSWNAMLS-AYALHGLGKGALLLFEEMKREGFAP----DDISILGVLQACIYSGLSEGGICLFNEIEQI 594 (754)
Q Consensus 523 ~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 594 (754)
..... ++. ..+..... .+...|++++|...+++... ..| ....+......+...++.+.+...+.....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~- 195 (291)
T COG0457 119 EKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK- 195 (291)
T ss_pred HHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh-
Confidence 77654 222 22333333 78889999999999999866 444 223444555557788899999999999876
Q ss_pred hCCCC-CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 595 YGLRP-ILEHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 595 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
.... ....+..+...+...+++++|...+... ...|+ ...+..+...+...++.+.+...+.+.++..|.
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 -LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2333 4677888889999999999999988765 33444 556666666666667899999999999999997
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.43 Score=48.89 Aligned_cols=61 Identities=10% Similarity=-0.007 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
|+.....+..+....|+.+.|...++++..++|+.+.+|...+++..-.|+.++|.+..++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555555555555555566666666666666666666666666666666666666655555
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.36 Score=46.29 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-CHHHHHH
Q 004425 564 DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG---RLSEAMNLINSS-PFSE-SPLLWRT 638 (754)
Q Consensus 564 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~~~ 638 (754)
|...|..|..+|...|+.+.|...|....+- ..++.+.+..+..++..+. ...++.++++++ ...| |.....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4457878888888888888888888777552 2334555666666664432 356777788766 4445 5566666
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCCcc
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
|...+...|++.+|...++.+++..|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 677788889999999999999998887543
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.011 Score=48.73 Aligned_cols=41 Identities=39% Similarity=0.671 Sum_probs=27.6
Q ss_pred ceeEEEECCEEEEEecCCCCCCChHHHHHHHHH-HHHHHHHcCCCC
Q 004425 703 GCSWIEIDSKLHHFVASGKDHPESEEIYSKLDL-LNDEMKLKVKDS 747 (754)
Q Consensus 703 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~ 747 (754)
|+||+++ |.|++||++||+...++..+.. ....++..||..
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~~~~~~~ 43 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTKEVGHDV 43 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhhhhCCCc
Confidence 7899987 9999999999999555543332 233444445443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.11 Score=45.52 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HhCCCCCccHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQ----IYGLRPILEHF 604 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 604 (754)
...++..+...|++++|+.+++++.. ..| |...+..++.++...|+..+|.+.|+.+.. ++|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44456667777888888888888877 445 455777888888888888888877776543 35777776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.58 E-value=1 Score=37.15 Aligned_cols=140 Identities=12% Similarity=0.044 Sum_probs=82.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHH
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 620 (754)
.-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+-+ --|. ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk----iFDi----------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK----IFDI----------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG----GS-G----------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh----hcCc----------hhhcchHHH
Confidence 34577788888888877532 333445455444444444445555555532 2222 234444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004425 621 MNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 621 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 699 (754)
...+-.++ -+......-+.+...+|+-+.-.+++..+.+-+..+|.....++++|.+.|...++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444432 233445556777888999999999999998755556889999999999999999999999999999886
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.073 Score=47.06 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=66.4
Q ss_pred HhhcCCHHHHHHHHHhC----CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCc
Q 004425 611 LGRAGRLSEAMNLINSS----PFSE---SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGML 683 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~----~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 683 (754)
+.+.|++++|..-|... |..+ ..+.|..-..+..+.+.++.|+..+.++++++|.+..+....+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 34556666666555432 1111 2445555566777889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCC
Q 004425 684 DEAAKVRTTMNDLR 697 (754)
Q Consensus 684 ~~a~~~~~~m~~~~ 697 (754)
++|+.-|+++.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987743
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.03 Score=34.27 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
..|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457777888888888888888888888888874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.039 Score=46.22 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHh
Q 004425 560 GFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLG 612 (754)
Q Consensus 560 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 612 (754)
...|+..++.+++.+++..|++..|.++.+...+.|+++-+..+|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46688888888899998889999999999988888887777777777766443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.17 Score=49.17 Aligned_cols=43 Identities=5% Similarity=-0.017 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccchHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAG--MEPDPVTFSRLLSLSASQACLVRGR 484 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~ 484 (754)
..+.++|+..+.+-..+- ..---.+|..+..+.+..|.++++.
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 556667776666655431 0111134555555555555555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.027 Score=34.55 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=2.4 Score=39.88 Aligned_cols=173 Identities=14% Similarity=0.075 Sum_probs=100.3
Q ss_pred HhcCCHHHHHHHHhccCCCCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----
Q 004425 510 AKCGSIDGAFQIFKGISDRDI------VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYS----- 578 (754)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----- 578 (754)
.+.|++++|.+.|+.+....+ .+--.++.++.+.+++++|+..+++.+..-..-....|..-|.+++.-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 456788888888887764221 234456677788888899988888888733221223444444444321
Q ss_pred --CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004425 579 --GLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILAS 656 (754)
Q Consensus 579 --g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 656 (754)
.+...+.+.|..+.+-..-=|+. .-..+|...+..+... =..-=..+...|.++|.+.-|..-+
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS-------------~Ya~dA~~~i~~~~d~-LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNS-------------RYAPDAKARIVKLNDA-LAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCC-------------cchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcChHHHHHHH
Confidence 22222333333332211111221 1112222222111000 0001124678889999999999999
Q ss_pred HHhhccCCCCcc---hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 657 KRLLDLEPKDAG---SFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 657 ~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+.+++--|+.+. ++..+.++|...|..++|.+..+-+...
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 999998777544 5667777899999999999998877653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.66 Score=47.50 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD--RDI----VSWNAMLSAYALHGLGKGALLLFEEMKR 558 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 558 (754)
+...++.+..+|.+.|++++|...|++..+ |+. .+|..+..+|...|+.++|++.+++.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555432 322 2355555555555555555555555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.24 Score=50.72 Aligned_cols=195 Identities=12% Similarity=0.058 Sum_probs=114.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSE 619 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 619 (754)
.-+..+.+.-+++-++.++ +.||..+-..++ +-.....+.++.++|++..+. |-. .+.. -......|.
T Consensus 178 AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE~----~lg~-s~~~~~~g~--- 245 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GEA----SLGK-SQFLQHHGH--- 245 (539)
T ss_pred HHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HHH----hhch-hhhhhcccc---
Confidence 3345667777777788777 778876533333 333455688999999888762 210 0000 000001111
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 620 AMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK--DAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 620 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
..+.+.+-...+-..+-..|..++++.|+.++|++.++.+++..|. +-..+..|++.+...+++.|+..++.+-.+..
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 1111111122233445567888888999999999999999988776 45688899999999999999999999876544
Q ss_pred CccCCceeEEEECCEEEEEecCCCCCCCh-------HHHHHHHHHHHHHHHHcCCCCC
Q 004425 698 LSKEAGCSWIEIDSKLHHFVASGKDHPES-------EEIYSKLDLLNDEMKLKVKDSS 748 (754)
Q Consensus 698 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~ 748 (754)
..|....+|- ..-+..-..+|+..|+. ......++-+.+.++..-++|.
T Consensus 326 lpkSAti~YT--aALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 326 LPKSATICYT--AALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred CCchHHHHHH--HHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 4333221111 11111111344444432 2234456677777777666664
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.3 Score=51.19 Aligned_cols=133 Identities=13% Similarity=0.130 Sum_probs=78.0
Q ss_pred HHHHcCChHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCH
Q 004425 539 AYALHGLGKGALLLFEE-MKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRL 617 (754)
Q Consensus 539 ~~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 617 (754)
...-.|+++++.++... -.-..++ ..-...++.-+.+.|..+.|+++.+.-..+ .++..++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCH
Confidence 33455777776665541 1111111 223556667777778888887775544332 3455678888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 618 SEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 618 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
+.|.++.++.. ++..|..|......+|+++.|+.+++++ .-+..|.-+|.-.|+.+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888777653 6778888888888888888888888773 346666677777777766666655554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.89 Score=39.32 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004425 565 DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA-GRLSEAMNLINSSPFSESPLLWRTLVSVS 643 (754)
Q Consensus 565 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 643 (754)
......++..|.+.+.++++.-++.++.. +...++.+... ++.+.|.+++.+- .++..|..++..+
T Consensus 69 ~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 69 HYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred cCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 34444566777777777777777665522 22333444433 6777777777663 2566777776655
Q ss_pred H
Q 004425 644 K 644 (754)
Q Consensus 644 ~ 644 (754)
.
T Consensus 136 l 136 (140)
T smart00299 136 L 136 (140)
T ss_pred H
Confidence 4
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.65 Score=44.82 Aligned_cols=112 Identities=15% Similarity=0.106 Sum_probs=59.5
Q ss_pred cCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHH-HH-HHHHHhcCCHHHH
Q 004425 512 CGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI--SIL-GV-LQACIYSGLSEGG 584 (754)
Q Consensus 512 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~-~l-l~a~~~~g~~~~a 584 (754)
.|+..+|...++++.+ .|..+|+-.-.+|.-.|+...-...+++.... ..||.. +|. .+ .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3555555555555543 35566666666666666666666666666542 234432 221 11 1233456666666
Q ss_pred HHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 585 ICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 585 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
.+.-++..+ +.+. .-.-.+....+.-.|+..|+.+++.+-
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 666655533 3322 222335555666666666666666543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.03 E-value=2.9 Score=47.74 Aligned_cols=166 Identities=15% Similarity=0.130 Sum_probs=96.3
Q ss_pred cCCHHHHHHHHHHHHHc-----CCCCCH--HHHHHHHHHHhccc--chHHHHHHHHHHHHhC--------CCCchhHHHH
Q 004425 442 ADDEEDVMVLFSQQRLA-----GMEPDP--VTFSRLLSLSASQA--CLVRGRSLHAYSIKTG--------YAADVIVGNA 504 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~-----g~~p~~--~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~--------~~~~~~~~~~ 504 (754)
+.++.+-+-+++++.+. .++.|. .-|...+..+...| -+++++.+. .++| ..|+...+..
T Consensus 864 qkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I---~kh~Ly~~aL~ly~~~~e~~k~ 940 (1265)
T KOG1920|consen 864 QKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYI---KKHGLYDEALALYKPDSEKQKV 940 (1265)
T ss_pred ccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHH---HhcccchhhhheeccCHHHHHH
Confidence 66777777777666532 122222 12334444444444 233333332 2222 2355544444
Q ss_pred ----HHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhc
Q 004425 505 ----LITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI--SILGVLQACIYS 578 (754)
Q Consensus 505 ----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~ 578 (754)
..+.+...+.+++|.-.|+..-+ ..--+.+|...|+|.+|+.+-.+|.. .-|.. +-..|..-+..+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHc
Confidence 44444556777777777766532 22345677778888888887776643 12222 224567778888
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 579 GLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 579 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
++.-+|-++......+ ..--+..|+++..+++|..+....
T Consensus 1013 ~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 8888888877766442 334567788888888888877654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.26 Score=46.18 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=77.2
Q ss_pred HHHHHHccC--CCCchhHHHHHHHHHh-----cCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccC-----------
Q 004425 314 AERMFDAIS--ERNLISWTALISGYVR-----SGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCS----------- 375 (754)
Q Consensus 314 A~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------- 375 (754)
.++.|.... ++|-.+|-+++..+.. .++++-....++.|.+-|+.-|..+|+.||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666665 5677778777776654 3667777788889999999999999999998876543
Q ss_pred -----ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCC
Q 004425 376 -----NLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGD 411 (754)
Q Consensus 376 -----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 411 (754)
.-+-+..++++|...|+.||-.+-..|++++++.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234578899999999999999999999999988654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.59 E-value=2.6 Score=40.45 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=101.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcC
Q 004425 538 SAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAG 615 (754)
Q Consensus 538 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 615 (754)
......|++.+|..+|+...+. .|+ ...-..+..++...|+++.|..++..+-.+ ..-+ ......-+..+.+..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHh
Confidence 3456678888888888888873 343 345667778888889998888888776431 1111 111234456677777
Q ss_pred CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--CCcchHHHHHHHHHhcCCchHH-HHHHH
Q 004425 616 RLSEAMNLINSSPFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEP--KDAGSFILVSNMYAGQGMLDEA-AKVRT 691 (754)
Q Consensus 616 ~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~a-~~~~~ 691 (754)
...+..++-.+....| |...-..+...+...|+.+.|...+-.++..+- +|...-..|..++...|.-+.+ ...++
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6666666666665556 677777788888888999888888777776543 3667777888888777754443 34444
Q ss_pred HH
Q 004425 692 TM 693 (754)
Q Consensus 692 ~m 693 (754)
+|
T Consensus 298 kL 299 (304)
T COG3118 298 KL 299 (304)
T ss_pred HH
Confidence 44
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.31 Score=45.70 Aligned_cols=111 Identities=7% Similarity=0.018 Sum_probs=79.6
Q ss_pred HHHHHhccCC--CCChhhHHHHHHHHhcC-----CChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCC----------
Q 004425 111 VAQKLFDGML--VRSAITWTSLIKGYLDD-----GDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLE---------- 173 (754)
Q Consensus 111 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------- 173 (754)
...+.|...+ ++|-.+|-.++..+... +..+-....+..|.+.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3445566665 56777777777766543 445556667788888898888889988887766543
Q ss_pred ------ChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCC-HhHHHHHhccCC
Q 004425 174 ------DRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGC-FREAENVFRGLA 221 (754)
Q Consensus 174 ------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~ 221 (754)
+-.-+.+++++|...|+.||..+-..|++++.+.+. ..+..++.-+|+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 223467889999999999999999999999988875 344444444444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=1.3 Score=38.54 Aligned_cols=84 Identities=8% Similarity=-0.043 Sum_probs=43.3
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 618 (754)
+...|++++|..+|+-+.- ..|... -+..|..+|-..+.+++|+..|..... .+ .-|...+-....+|...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHH
Confidence 3455666666666666555 333222 334444444455666666666665543 12 122223334555566666666
Q ss_pred HHHHHHHhC
Q 004425 619 EAMNLINSS 627 (754)
Q Consensus 619 ~A~~~~~~~ 627 (754)
.|++.|+..
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 666665544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.28 E-value=4.9 Score=41.66 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004425 534 NAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEI 591 (754)
Q Consensus 534 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 591 (754)
..+..+..+.|+.++|++.+++|.+....-|. .....|+.++...+.+.++..++.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34666666777777777777777753211122 25566777777777777777777665
|
The molecular function of this protein is uncertain. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.17 E-value=7.8 Score=39.82 Aligned_cols=150 Identities=12% Similarity=-0.039 Sum_probs=81.9
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC--cc
Q 004425 528 RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP---DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI--LE 602 (754)
Q Consensus 528 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 602 (754)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+-++|...++..... .+... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344577788888888888888888888877643222 2223333445556677788888887777661 11111 11
Q ss_pred HHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHhhccCCCCcchHHHHHH
Q 004425 603 HFACMVDLLGRAGRLSEAMNL-INSSPFSESPLLWRTLVSVSKLM------ANSKFSILASKRLLDLEPKDAGSFILVSN 675 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 675 (754)
....+...+.. ..+..... ........-..++..+...+... ++.+.+...|+++.++.|+....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000122333334444444 78899999999999999998888888887
Q ss_pred HHHhc
Q 004425 676 MYAGQ 680 (754)
Q Consensus 676 ~~~~~ 680 (754)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.10 E-value=6.5 Score=38.72 Aligned_cols=97 Identities=9% Similarity=-0.023 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcccchH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-C--ChhHHHHHHHH
Q 004425 466 TFSRLLSLSASQACLV---RGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD-R--DIVSWNAMLSA 539 (754)
Q Consensus 466 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~ 539 (754)
++..+..++...+..+ .|..+++.+... ++-.+.++-.-+..+.+.++.+++.+++.+|.. . ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4445555555555433 344444444322 122233333445555556666666666666643 1 12233333333
Q ss_pred H---HHcCChHHHHHHHHHHHHcCCCCC
Q 004425 540 Y---ALHGLGKGALLLFEEMKREGFAPD 564 (754)
Q Consensus 540 ~---~~~g~~~~A~~~~~~m~~~g~~p~ 564 (754)
+ .. .....|...+..++...+.|.
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHHHHhCCC
Confidence 3 22 223455555555554444443
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.08 E-value=2.1 Score=45.75 Aligned_cols=116 Identities=17% Similarity=0.058 Sum_probs=76.6
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccHH-HHHHHHHhhcCCHHHHHHHHHhCCC-CC-----CHHHHHHHHHHHHhcCChH
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPILEHF-ACMVDLLGRAGRLSEAMNLINSSPF-SE-----SPLLWRTLVSVSKLMANSK 650 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~-~p-----~~~~~~~l~~~~~~~g~~~ 650 (754)
....+.|.++++.+.+. + |+...| -.-...+...|++++|++.+++.-. .. ....+--++..+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~--y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--Y-PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh--C-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34567777777777653 2 444333 3455566677888888888875421 11 2334445566677788999
Q ss_pred HHHHHHHHhhccCCCCcchH-HHHHHHHHhcCCc-------hHHHHHHHHHhhC
Q 004425 651 FSILASKRLLDLEPKDAGSF-ILVSNMYAGQGML-------DEAAKVRTTMNDL 696 (754)
Q Consensus 651 ~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~-------~~a~~~~~~m~~~ 696 (754)
+|...+.++.+.+.-....| +..+-+|...|+. ++|.+++++....
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999998776644444 4555567788888 8888888877653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.00 E-value=11 Score=40.74 Aligned_cols=57 Identities=16% Similarity=0.066 Sum_probs=32.7
Q ss_pred CCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHH
Q 004425 392 YLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQ 455 (754)
Q Consensus 392 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m 455 (754)
++.+....-.+.+++.+.|.-++|.+.|-+-..+. +-+..|.. .+++.+|.++-+..
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~--LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVE--LNQWGEAVELAQRF 904 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHH--HHHHHHHHHHHHhc
Confidence 34455556666777777777777766655443321 22344555 66666666665544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.44 Score=39.09 Aligned_cols=54 Identities=28% Similarity=0.174 Sum_probs=35.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 538 SAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 538 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
-+++..|+.+.|++.|.+.+. +-| +...|+.-..++.-+|+.++|+.-+++..+
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 345666777777777777666 444 345677777777777777777776666655
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.8 Score=36.87 Aligned_cols=114 Identities=12% Similarity=0.055 Sum_probs=64.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc
Q 004425 537 LSAYALHGLGKGALLLFEEMKREGFAP--DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA 614 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 614 (754)
.....+.|++++|.+.|+.+...-... ....-..++.++.+.|++++|...+++.++-+--.|+ ..|.....+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 344456778888888888777642211 1235566777777888888888888777663222232 2344444444332
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 615 GRLSEAMNLINSS-PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 615 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
...+- .+..+ ..+-| .+....|...+++++..-|++.
T Consensus 96 ~~~~~---~~~~~~~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEG---SLQSFFRSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhh---HHhhhcccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 22221 11111 11111 1345678888999999999864
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.59 Score=45.12 Aligned_cols=159 Identities=12% Similarity=0.054 Sum_probs=118.8
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHH----HHHHHHHhhcCCH
Q 004425 542 LHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHF----ACMVDLLGRAGRL 617 (754)
Q Consensus 542 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~~ 617 (754)
..|++.+|-..++++++. .+.|-..+.-.=.+|...|+.+.-...++++.. .-.|+...| ..+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 578999999999999974 455667888888899999999999999988865 235555433 3566677899999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC----CcchHHHHHHHHHhcCCchHHHHHHH
Q 004425 618 SEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK----DAGSFILVSNMYAGQGMLDEAAKVRT 691 (754)
Q Consensus 618 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 691 (754)
++|++.-++. .+.| |.-.-.++.......|+.+++.+..++--..--+ -...|-..+-.|.+.+.++.|+++|.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999876 3333 5656667778888899999999887765443222 12346667777889999999999998
Q ss_pred HHhhCCCccCCc
Q 004425 692 TMNDLRLSKEAG 703 (754)
Q Consensus 692 ~m~~~~~~~~~~ 703 (754)
.=.-..+.|+.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 654445555554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.6 Score=44.22 Aligned_cols=91 Identities=20% Similarity=0.196 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc-cHHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPDD----ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL-EHFACM 607 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l 607 (754)
|+.-+.. .+.|++.+|...|...++.. |+. ..+.-|..++...|++++|..+|..+.++++-.|.. +.+--|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5544443 34566777777777777643 332 244556677777777777777777776654444432 344444
Q ss_pred HHHHhhcCCHHHHHHHHHh
Q 004425 608 VDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~ 626 (754)
...+.+.|+.++|...+++
T Consensus 222 g~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHHhcCHHHHHHHHHH
Confidence 4444444444444444433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.65 E-value=13 Score=40.72 Aligned_cols=76 Identities=11% Similarity=0.037 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcc
Q 004425 295 ISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSV 373 (754)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 373 (754)
..+...+|+.+.-.|++++|-...-.|...+..-|.-.+..+...++......++ .....+.+...|..+|..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 3456677788888888888888888888888888877777777776655443322 111122455567777766655
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.64 E-value=2.1 Score=45.04 Aligned_cols=157 Identities=15% Similarity=0.041 Sum_probs=91.5
Q ss_pred HHHHHcCChhHHHHHHH--HhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 004425 233 LEYNKAGESEMAFHVFV--HLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGM 310 (754)
Q Consensus 233 ~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 310 (754)
+...-.|+++++.++.. ++.. .+ +..-...+++.+-+.|..+.|.++-.+- ..-.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCC
Confidence 34456677777666654 1211 11 1334667777777778777777664332 123455678888
Q ss_pred hHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHh
Q 004425 311 SEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKH 390 (754)
Q Consensus 311 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 390 (754)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ |..++--|...|+.+.-.++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 998888877664 566899999999999999999888887654 455666666777777777776666655
Q ss_pred CCCcchhHHHHHHHHHHhCCCHHHHHHHHhc
Q 004425 391 GYLSDVRLGTALVDIYAKGGDLKSARMLLDG 421 (754)
Q Consensus 391 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 421 (754)
|- ++....++.-.|+.++..+++.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 52 33333334444555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.11 Score=32.27 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 669 SFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
+|..|+++|.+.|+|++|++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4788999999999999999999984
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.49 E-value=6.9 Score=36.94 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=84.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh
Q 004425 536 MLSAYALHGLGKGALLLFEEMKREGFA-P-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR 613 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 613 (754)
-+..-.+.|++++|.+.|+.+.....- | ...+...++.++-+.+++++|+...++....++-.|++. |...+.++.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs- 117 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS- 117 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH-
Confidence 344455678999999999988864321 1 234667777788888899999988888877666666653 333344443
Q ss_pred cCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC-----------------cchHHHHHH
Q 004425 614 AGRLSEAMNLINSSPF-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD-----------------AGSFILVSN 675 (754)
Q Consensus 614 ~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------------~~~~~~l~~ 675 (754)
.+..++. ..|+. -...|...++++++.-|++ +..-...++
T Consensus 118 ---------~~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iar 175 (254)
T COG4105 118 ---------YFFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIAR 175 (254)
T ss_pred ---------HhccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 11211 1223334444444444442 233456778
Q ss_pred HHHhcCCchHHHHHHHHHhhC
Q 004425 676 MYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 676 ~~~~~g~~~~a~~~~~~m~~~ 696 (754)
.|.+.|.|..|..-++.|.+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc
Confidence 899999999999999998774
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.45 E-value=7.5 Score=38.44 Aligned_cols=129 Identities=13% Similarity=0.148 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--c----CCHHHHHHHHhccCC-------CChhHHHHHHHHHHHcCC-
Q 004425 480 LVRGRSLHAYSIKTGYAADVIVGNALITMYAK--C----GSIDGAFQIFKGISD-------RDIVSWNAMLSAYALHGL- 545 (754)
Q Consensus 480 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~- 545 (754)
++....+++.+.+.|+.-+..+|-+..-.... . -....|..+|+.|++ ++-..+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455566666666666555544442222221 1 124566777777754 233445555443 2222
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004425 546 ---GKGALLLFEEMKREGFAPDDI--SILGVLQACIYSGL--SEGGICLFNEIEQIYGLRPILEHFACMVDLL 611 (754)
Q Consensus 546 ---~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 611 (754)
.+++..+|+.+.+.|+..+.. ....++..+..... +.++.++++.+.+ .|+++...+|..++-+-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHHH
Confidence 356677888888888877543 34444443332222 4578888888888 59998888877655444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.41 E-value=4.7 Score=34.76 Aligned_cols=128 Identities=9% Similarity=0.018 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLL 611 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 611 (754)
....++..+...+.......+++.+...+. .+....+.++..|++.+ ..+...+++. .++.......+..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 345677777777888888888888887662 45567777888877653 3444455442 12233344577777
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 612 GRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLM-ANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 612 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
.+.+.++++.-++.+++. |...+..+..+ ++.+.|.+.+++ +.++..|..++..+..
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 778888888888887753 22222333333 788888887775 3356677777766553
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.37 E-value=3.6 Score=37.37 Aligned_cols=158 Identities=15% Similarity=0.030 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
..||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++--.|+++-|.+-|...-+ -.|+...-...+-
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DPfR~LWLY 174 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDPFRSLWLY 174 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCChHHHHHHH
Confidence 3566666666677777777777777766 44432 2333333334455667666665555533 2333221111111
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC-------cchHHHHHHHHHhcCC
Q 004425 610 LLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD-------AGSFILVSNMYAGQGM 682 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 682 (754)
.-.+.-+..+|..-+.+-...-|..-|...+-.+.-. .+. .+.+++++.+-..++ .++|.-|+..|...|+
T Consensus 175 l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLG-KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 1223335556654432211223444555443332221 111 112233333322222 4579999999999999
Q ss_pred chHHHHHHHHHhh
Q 004425 683 LDEAAKVRTTMND 695 (754)
Q Consensus 683 ~~~a~~~~~~m~~ 695 (754)
.++|..+|+....
T Consensus 253 ~~~A~~LfKLaia 265 (297)
T COG4785 253 LDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987644
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=16 Score=40.71 Aligned_cols=55 Identities=7% Similarity=-0.092 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 004425 605 ACMVDLLGRAGRLSEAMNLINSSPFSE--SPLLWRTLVSVSKLMANSKFSILASKRL 659 (754)
Q Consensus 605 ~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 659 (754)
.--+..-.+.++++.+...+..|+..- ...-.--+..+....|+.++|...|+++
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333334345666666666665553211 1111122344444456666666666665
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.16 Score=48.84 Aligned_cols=113 Identities=12% Similarity=0.023 Sum_probs=80.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc
Q 004425 570 GVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLGRAGRLSEAMNLINSS-PFS-ESPLLWRTLVSVSKLM 646 (754)
Q Consensus 570 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~ 646 (754)
.-..-|.++|.+++|+.+|..... +.| +..++..-..+|.+..++..|+.=.+.. .+. .-...|.--+.+-...
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 346678999999999999998744 556 7888889999999999999887766543 211 1133444455555667
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHH
Q 004425 647 ANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKV 689 (754)
Q Consensus 647 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 689 (754)
|+.++|..-++.+++++|++.+.- ..|++.....|+.-+
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELk----K~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELK----KSLARINSLRERKIA 217 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHH----HHHHHhcchHhhhHH
Confidence 899999999999999999965443 344444444444433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.3 Score=47.12 Aligned_cols=87 Identities=10% Similarity=-0.020 Sum_probs=62.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC
Q 004425 537 LSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG 615 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 615 (754)
.+-|.++|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..-......- -...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 4679999999999999999887 778 8899999999999999998887776666441 124566666655
Q ss_pred C-------HHHHHHHHHhC-CCCCCHH
Q 004425 616 R-------LSEAMNLINSS-PFSESPL 634 (754)
Q Consensus 616 ~-------~~~A~~~~~~~-~~~p~~~ 634 (754)
. ..||.+=++.. .++|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 4 44444444432 4566533
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.99 E-value=7.8 Score=36.10 Aligned_cols=205 Identities=13% Similarity=0.128 Sum_probs=106.8
Q ss_pred CCCCHH----HHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--hhHH
Q 004425 460 MEPDPV----TFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRD--IVSW 533 (754)
Q Consensus 460 ~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 533 (754)
+.||.. .|.-...+|....+++++..-+.++.+. .+.+...| -....++.|.-+.+++.+-+ +..|
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456553 3444445666677777777766555531 11121111 11222334444444443311 1234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC----CCCccHHHHH
Q 004425 534 NAMLSAYALHGLGKGALLLFEEMKR--EGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGL----RPILEHFACM 607 (754)
Q Consensus 534 ~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~~~~l 607 (754)
+--...|..+|..+.|-..+++.-+ .+++| ++|+++|++....... ..-.+.+...
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~lenv~P------------------d~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKALENVKP------------------DDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCH------------------HHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 4456777777777777666665443 22444 4444444443321110 1112345555
Q ss_pred HHHHhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHhhcc----CCCCcchHHHHHH
Q 004425 608 VDLLGRAGRLSEAMNLINSS-------PFSESP-LLWRTLVSVSKLMANSKFSILASKRLLDL----EPKDAGSFILVSN 675 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~ 675 (754)
...|.+..+++||-..+.+- ..-|+. ..+-+.+-.+.-..++..|++.++.-.++ .|++..+...|..
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 66777888888877666543 111221 12333344444556888888888876553 4666667777765
Q ss_pred HHHhcCCchHHHHHHH
Q 004425 676 MYAGQGMLDEAAKVRT 691 (754)
Q Consensus 676 ~~~~~g~~~~a~~~~~ 691 (754)
.| ..|+.+++.++..
T Consensus 237 ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVLS 251 (308)
T ss_pred Hh-ccCCHHHHHHHHc
Confidence 55 4578888777654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.89 E-value=3 Score=44.58 Aligned_cols=114 Identities=13% Similarity=0.061 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHhccCC--CChhHHHHH-HHHHHHcCChHHHHHHHHHHHHc--CCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 004425 512 CGSIDGAFQIFKGISD--RDIVSWNAM-LSAYALHGLGKGALLLFEEMKRE--GFA-PDDISILGVLQACIYSGLSEGGI 585 (754)
Q Consensus 512 ~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~--g~~-p~~~t~~~ll~a~~~~g~~~~a~ 585 (754)
....+.|.++++.+.+ |+...|... ...+...|+.++|++.|++.... ..+ .....+.-+...+.-..+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3456667777776655 665555433 23455667777777777765531 111 12234555556666677777777
Q ss_pred HHHHHHHHHhCCCCCccHHH-HHHHHHhhcCCH-------HHHHHHHHhC
Q 004425 586 CLFNEIEQIYGLRPILEHFA-CMVDLLGRAGRL-------SEAMNLINSS 627 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~ 627 (754)
..|..+.+...- +...|. ..+-++...|+. ++|.+++.++
T Consensus 326 ~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 326 EYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 777777653222 222222 223334455555 6666666655
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.68 Score=44.74 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEE
Q 004425 636 WRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHH 715 (754)
Q Consensus 636 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~ 715 (754)
.+.|-.++.+.++++.|.++.+.++.+.|+++.-+.-.|-+|.+.|.+..|..-++...++..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P----------------- 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP----------------- 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-----------------
Confidence 456777888999999999999999999999999999999999999999999999987766443
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHH
Q 004425 716 FVASGKDHPESEEIYSKLDLLNDEM 740 (754)
Q Consensus 716 ~~~~~~~~~~~~~~~~~l~~l~~~~ 740 (754)
..|.+..|...+..+.++.
T Consensus 247 ------~dp~a~~ik~ql~~l~~~~ 265 (269)
T PRK10941 247 ------EDPISEMIRAQIHSIEQKQ 265 (269)
T ss_pred ------CchhHHHHHHHHHHHhhcC
Confidence 2566677777777665443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.57 E-value=5.5 Score=35.74 Aligned_cols=115 Identities=5% Similarity=-0.018 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHH-----HHHHHHHhhcCCHHHH
Q 004425 548 GALLLFEEMKREGFAPDDISILG--VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHF-----ACMVDLLGRAGRLSEA 620 (754)
Q Consensus 548 ~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A 620 (754)
+.....+++....-+....++.. +...+...|++++|...++.... . |..+.+ -.|..++...|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~-t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---Q-TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---c-chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 55555566665322222222222 23356777888888888776643 1 222222 2566778889999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 621 MNLINSSPFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 621 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
++.++....+. .+.....-...+...|+.++|...|+++++.++++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99998763221 22333444567788899999999999999887553
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.48 E-value=21 Score=39.78 Aligned_cols=81 Identities=15% Similarity=0.012 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHh---cCCHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTG-YAADVIVGNALITMYAK---CGSIDG 517 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~---~g~~~~ 517 (754)
.|++|.|++.+-. ..+...+.+.+...+.-+.-..-.+... ..+.... -.|...-+..||..|.+ ..+..+
T Consensus 271 tgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~ 345 (613)
T PF04097_consen 271 TGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEITDPRE 345 (613)
T ss_dssp TT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT-HHH
T ss_pred HhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhccCHHH
Confidence 7888888888766 2234556666666655443332222211 2222111 01112446677777776 457888
Q ss_pred HHHHHhccCC
Q 004425 518 AFQIFKGISD 527 (754)
Q Consensus 518 A~~~~~~~~~ 527 (754)
|.+.|--+..
T Consensus 346 Al~Y~~li~~ 355 (613)
T PF04097_consen 346 ALQYLYLICL 355 (613)
T ss_dssp HHHHHHGGGG
T ss_pred HHHHHHHHHH
Confidence 8888776643
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.23 E-value=22 Score=39.49 Aligned_cols=157 Identities=12% Similarity=-0.021 Sum_probs=83.7
Q ss_pred CCCcHHHHHHHhccCCCcchhHHHHHHHHH----hCC------------CCChhhhHHHHHHHHccCChhHHHHHhccCC
Q 004425 57 LFNDWPQLVKISIGSGDLKLGQAVHAFLLK----SGS------------QNDTFEANNLINLYAKFNRLDVAQKLFDGML 120 (754)
Q Consensus 57 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 120 (754)
.....+.++.++...+.+-.-.-++..+.. .+. ....-....-|+.+.+..-++-|..+-..-.
T Consensus 282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~ 361 (933)
T KOG2114|consen 282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQH 361 (933)
T ss_pred CccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 334456677777666665544444444332 220 1111233455666666666666666655432
Q ss_pred CCChhhHHHHHH----HHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHH
Q 004425 121 VRSAITWTSLIK----GYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFV 196 (754)
Q Consensus 121 ~~~~~~~~~li~----~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 196 (754)
- +..+-..+.. -+-+.|++++|...|-+-... +.| ..+++-+-....+..--.+++.+.+.|+. +..-
T Consensus 362 ~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dh 433 (933)
T KOG2114|consen 362 L-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDH 433 (933)
T ss_pred C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchh
Confidence 2 2222233333 334577777777776665432 222 23445555555555566666667777754 3333
Q ss_pred HHHHHHHhHhcCCHhHHHHHhccCC
Q 004425 197 GTSLISMYFHSGCFREAENVFRGLA 221 (754)
Q Consensus 197 ~~~li~~~~~~g~~~~A~~~~~~~~ 221 (754)
-+.|+.+|.+.++.+.-.++.+...
T Consensus 434 ttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 434 TTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHhcchHHHHHHHhcCC
Confidence 4567777777777777666665544
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.22 Score=30.30 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 635 LWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 635 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777777777788888888777777774
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.15 E-value=13 Score=36.64 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 004425 401 ALVDIYAKGGDLKSARMLLDGFSCK---YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP 464 (754)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 464 (754)
.-+..+.+.++.+.+.+.+.+|... ....+...+..+-.-.......+...+..+....+.|..
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 3344444455555555555555411 122344444333221123344555555555554444443
|
It is also involved in sporulation []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.98 Score=39.18 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=32.6
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
..++.+.++.++.-+.-+.|+.++.-..-++++...|+|.+|.++++.+.+++
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 44566666666666666666666666666666666666666666666654443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.84 E-value=4.1 Score=35.97 Aligned_cols=134 Identities=4% Similarity=-0.084 Sum_probs=81.1
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcC--CHhHHHHHhccCC
Q 004425 144 LGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSG--CFREAENVFRGLA 221 (754)
Q Consensus 144 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 221 (754)
++.++.+.+.+++|+...+..+++.+.+.|+.....+ ++..++-+|.......+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4556666778888888888888888888887654444 455565555544443332222211 1233444444333
Q ss_pred CCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHh
Q 004425 222 YKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKF 289 (754)
Q Consensus 222 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 289 (754)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..++.-..+.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34667778888899999998888765322 3334455667766666666555555555443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.84 E-value=5.9 Score=34.50 Aligned_cols=88 Identities=13% Similarity=0.048 Sum_probs=47.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYGLRPILE-HFACMVDLLGRAGRLSEAMNLINSSPF-SESPLLWRTLVSVSKLMANSKFS 652 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a 652 (754)
-.+.++.+++..++..+. -+.|... .-..-+..+.+.|++.+|+.+++++.. .|....-.+|+..|....+-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 345556666666666663 3445432 222334455667777777777776622 23444445666666555443434
Q ss_pred HHHHHHhhccCCC
Q 004425 653 ILASKRLLDLEPK 665 (754)
Q Consensus 653 ~~~~~~~~~~~p~ 665 (754)
....+++++..|+
T Consensus 97 r~~A~evle~~~d 109 (160)
T PF09613_consen 97 RRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHhcCCC
Confidence 4445555555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.41 E-value=18 Score=36.80 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 564 DDISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 564 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
|.-.+..++.++.-.|++++|.+..++|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 344556666777777777777777777754
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.39 E-value=1.1 Score=38.06 Aligned_cols=54 Identities=17% Similarity=0.041 Sum_probs=43.2
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
..++.++++.++..+.-+.|+.++.-..-++++...|+|+||.++++.+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 367888888888888888888888888888888888888888888887766543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.35 E-value=12 Score=34.67 Aligned_cols=70 Identities=13% Similarity=0.246 Sum_probs=43.0
Q ss_pred HHhhcCCHHHHHHHHHhC---CCCCCHHHHH-----HHHHHHHhc-CChHHHHHHHHHhhccCCC--CcchHHHHHHHHH
Q 004425 610 LLGRAGRLSEAMNLINSS---PFSESPLLWR-----TLVSVSKLM-ANSKFSILASKRLLDLEPK--DAGSFILVSNMYA 678 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~---~~~p~~~~~~-----~l~~~~~~~-g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~ 678 (754)
.-+..+++.+|+++|+++ ....+..-|. --...|... .+.--+.+++++-.+++|. ++.-+..|..+..
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ 242 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLD 242 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHH
Confidence 335677888899988765 2222222222 122334443 7888889999999999998 4444555655544
Q ss_pred h
Q 004425 679 G 679 (754)
Q Consensus 679 ~ 679 (754)
.
T Consensus 243 a 243 (288)
T KOG1586|consen 243 A 243 (288)
T ss_pred H
Confidence 3
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.33 Score=30.11 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhcc
Q 004425 635 LWRTLVSVSKLMANSKFSILASKRLLDL 662 (754)
Q Consensus 635 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 662 (754)
+|..|...|...|++++|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.075 Score=46.34 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=69.3
Q ss_pred HHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChh
Q 004425 62 PQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYE 141 (754)
Q Consensus 62 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 141 (754)
..++..+.+.+.+......++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 346778888889999999999999888777889999999999999999999999884433 44456788888888888
Q ss_pred HHHHHHHHHH
Q 004425 142 SVLGIACDMY 151 (754)
Q Consensus 142 ~a~~~~~~m~ 151 (754)
++.-++.++.
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 8888888763
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.84 E-value=25 Score=37.49 Aligned_cols=144 Identities=9% Similarity=0.015 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHccCC--CCch-hHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHh
Q 004425 295 ISVGNAIVTMYGKHGMSEEAERMFDAISE--RNLI-SWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGC 371 (754)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 371 (754)
...++.||.---....++.++.+++.+.. |... -|-.....=.+.|..+.+.++|++-+.. ++-+...+...+.-+
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 33444555433333444555666665553 3322 3444444455677777788888776643 444444444444333
Q ss_pred -cccCChHHHHHHHHHHHH-hCCCc-chhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhh
Q 004425 372 -SVCSNLELGLQLHGFAIK-HGYLS-DVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFME 439 (754)
Q Consensus 372 -~~~~~~~~a~~~~~~~~~-~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 439 (754)
...|+.+.....|+.++. .|..- ....+...|..-..++++.....+++++.+-....++....-|.+
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~ 194 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQ 194 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHH
Confidence 244666666677776666 33321 233455555555556666666666666554444444444443333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.93 Score=29.67 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI 566 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 566 (754)
+|..+...|...|++++|+++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466677777888888888888888877 456554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.44 E-value=3.6 Score=40.60 Aligned_cols=134 Identities=13% Similarity=0.033 Sum_probs=71.0
Q ss_pred hhHHHHHHHHhHhcCcccChhhHHHHHHHhcc--cCC----hHHHHHHHHHHHHhCC---CcchhHHHHHHHHHHhCCCH
Q 004425 342 GGKAINGFLEFLDLGICCDSSCLATVIDGCSV--CSN----LELGLQLHGFAIKHGY---LSDVRLGTALVDIYAKGGDL 412 (754)
Q Consensus 342 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~----~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~ 412 (754)
+++.+.+++.|.+.|.+-+..+|.+....... ..+ ...+..+|+.|++... .++...+..++.. ...+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777777666553332222 222 3455666666666321 1222333333221 11111
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcccc--hHHHHHHHH
Q 004425 413 KSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPV--TFSRLLSLSASQAC--LVRGRSLHA 488 (754)
Q Consensus 413 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~ 488 (754)
..-.+.+..+|+.+.+.|+..+.. ..+.++..+..... +..+..+++
T Consensus 156 -----------------------------e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~ 206 (297)
T PF13170_consen 156 -----------------------------EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYN 206 (297)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 112345667777777777665542 33444443333222 446778888
Q ss_pred HHHHhCCCCchhHHHHHH
Q 004425 489 YSIKTGYAADVIVGNALI 506 (754)
Q Consensus 489 ~~~~~~~~~~~~~~~~li 506 (754)
.+.+.|+++....|..+.
T Consensus 207 ~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 207 ALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHcCCccccccccHHH
Confidence 888888887776666553
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.7 Score=28.06 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD 564 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 564 (754)
.+|..+..+|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3567777777778888888888887777 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.49 E-value=37 Score=37.34 Aligned_cols=208 Identities=14% Similarity=0.145 Sum_probs=105.0
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---cCCHHHHHHHHhccCC-CChhHHHHHHHHHH----HcCChHHHH
Q 004425 479 CLVRGRSLHAYSIKTGYAADVIVGNALITMYAK---CGSIDGAFQIFKGISD-RDIVSWNAMLSAYA----LHGLGKGAL 550 (754)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~----~~g~~~~A~ 550 (754)
+.+.|..++....+.|. |+.... +...|.. ..+...|.++|....+ -.+.+.-.+..+|. ...+...|.
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 44556666666666553 222222 2222222 1245566666665543 22222222222222 223566777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH-----hh--cCCHHHHHHH
Q 004425 551 LLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLL-----GR--AGRLSEAMNL 623 (754)
Q Consensus 551 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~--~g~~~~A~~~ 623 (754)
.++++..+.| .|-..--...+..+.. +.++.+...+..+.+ .|.+-....-..+.+.. .+ ..+.+.+..+
T Consensus 385 ~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 385 AYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 7777777766 3332222233333444 556555555555544 34332211111111111 11 2245666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc-C--CchHHHHHHHHHhh
Q 004425 624 INSSPFSESPLLWRTLVSVSKLM----ANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ-G--MLDEAAKVRTTMND 695 (754)
Q Consensus 624 ~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~ 695 (754)
+.+.....++.....|...+..- .+.+.|...+.++-+.. +.....++..+..- | ++..|.+.+....+
T Consensus 462 ~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 462 YSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 66665555666666666555433 36777888887777666 66777777776543 1 26788888877654
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.45 E-value=40 Score=37.62 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcc
Q 004425 226 RCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYEN 273 (754)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 273 (754)
..| ++|-.+.+.|++++|.++..+.... .......|...+..+...
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 344 4667778888888888888555433 445566777777777664
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.43 E-value=14 Score=34.31 Aligned_cols=94 Identities=7% Similarity=0.026 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHH---HHHHhcCChHHHHHHHHHhhccCCCCcc-----
Q 004425 603 HFACMVDLLGRA-GRLSEAMNLINSS-----PFSESPLLWRTLV---SVSKLMANSKFSILASKRLLDLEPKDAG----- 668 (754)
Q Consensus 603 ~~~~l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~p~~~~----- 668 (754)
++-.+.+.|... .++++|+..++.. +.+.+...-..++ ..-...+++.+|+.+|+++..-.-+|+.
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 334455555443 5566666666544 1111222222222 2334558899999999998875555432
Q ss_pred -hHHHH-HHHHHhcCCchHHHHHHHHHhhC
Q 004425 669 -SFILV-SNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 669 -~~~~l-~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
-|..- +-++.-.++.-.+.+.+++-.+.
T Consensus 195 KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 195 KDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 22222 22333446666666777765553
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.39 E-value=3.6 Score=39.75 Aligned_cols=58 Identities=17% Similarity=0.349 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004425 500 IVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMK 557 (754)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 557 (754)
.++..++..+..+|+.+.+...++++.. -|...|..+|.+|.+.|+...|+..|+++.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3445555555555555555555555533 233455555555555555555555555544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.48 Score=26.79 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=19.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRT 691 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~ 691 (754)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356788889999999999988775
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.07 E-value=1.8 Score=41.77 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=25.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
++..+...|+.+.+...++++++.+|-+...|..+..+|...|+...|++.|+.+
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444444444444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=88.99 E-value=12 Score=31.16 Aligned_cols=134 Identities=13% Similarity=0.066 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHH---HHHHHHHHhcCCHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVG---NALITMYAKCGSIDGA 518 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A 518 (754)
.|..++..++..+...+ .+..-++-++--.....+-+...+.++.+-+ -.|...+ ..++..|.+.|...+
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~se- 87 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKLSE- 87 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---H-
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcchHH-
Confidence 67777877777777654 2334444444433333343333333333322 2222211 223344444333222
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 004425 519 FQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGL 597 (754)
Q Consensus 519 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 597 (754)
....-+..+...|+-+.-.+++.++.+ .-+++...+..+..||.+.|+..++.+++.++.+ .|+
T Consensus 88 -------------~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-kG~ 151 (161)
T PF09205_consen 88 -------------YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE-KGL 151 (161)
T ss_dssp -------------HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-
T ss_pred -------------HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-hch
Confidence 233445666777777777777777764 2456667777777888888888888888887777 354
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.93 E-value=76 Score=40.20 Aligned_cols=308 Identities=13% Similarity=0.035 Sum_probs=157.7
Q ss_pred HHhcccCChHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHhCCCHHHHHHHHhc-CCCCChhhHHHHHHHHhhhhcCCH
Q 004425 369 DGCSVCSNLELGLQLHGFAIKHG--YLSDVRLGTALVDIYAKGGDLKSARMLLDG-FSCKYTAEFNAILSGFMEKIADDE 445 (754)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~ 445 (754)
.+-.+.+.+..|...++.-.... -......+..+...|...+++|....+... ...++ ...-|.-... .|++
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~--~g~~ 1465 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEA--SGNW 1465 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHh--hccH
Confidence 34445566666666666521100 011223344445577777777776666552 22221 1122223333 7888
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHH-HHHHHhcCCHHHHHHHHh
Q 004425 446 EDVMVLFSQQRLAGMEPD-PVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNAL-ITMYAKCGSIDGAFQIFK 523 (754)
Q Consensus 446 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 523 (754)
..|...|+.+.+. .|+ ..+++.++......+.++...-..+-.... ..+....++.+ +.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 8888888888865 455 566776666666666666555433333222 12222222222 333345566666655554
Q ss_pred ccCCCChhHHHHH-H-HHHHHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---------
Q 004425 524 GISDRDIVSWNAM-L-SAYALHGL--GKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNE--------- 590 (754)
Q Consensus 524 ~~~~~~~~~~~~l-i-~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~--------- 590 (754)
..+..+|.+. + ..+.+..+ .-.-.++.+.+.+.-+.| +.+|+..|.+..+.++.-+
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 4555566654 2 22222211 111112333333321221 2233333332222222111
Q ss_pred -HHHHhCCCCCccHHH---HHHHHHhhcCCHHHHHHHH---Hh------CC---CCCCHHHHHHHHHHHHhcCChHHHHH
Q 004425 591 -IEQIYGLRPILEHFA---CMVDLLGRAGRLSEAMNLI---NS------SP---FSESPLLWRTLVSVSKLMANSKFSIL 654 (754)
Q Consensus 591 -~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~---~~------~~---~~p~~~~~~~l~~~~~~~g~~~~a~~ 654 (754)
.....++.++....+ ....-+.+.+....+.+-+ ++ |. ...-..+|....+.++..|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 111123333322111 1111122222222222222 11 11 11237789999999999999999999
Q ss_pred HHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 655 ASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 655 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
+.-++.+.. -+..+.-.+..+...|+-..|..++++-.+..
T Consensus 1692 all~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 988888876 35689999999999999999999998776543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.91 E-value=11 Score=35.07 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHhhccCCCC------cchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 648 NSKFSILASKRLLDLEPKD------AGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 648 ~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
+.++|+++|++.+++--++ ...|...+++|.+..+++||...+.+
T Consensus 125 ~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 125 KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 4455555555554432111 12344455556666666665555543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.90 E-value=0.65 Score=28.11 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
..+..+|.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.45 E-value=17 Score=32.02 Aligned_cols=122 Identities=12% Similarity=0.094 Sum_probs=75.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHH--HHHHHhhcCC
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFAC--MVDLLGRAGR 616 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~ 616 (754)
+++.+..++|+.-|.++.+.|...=.+ ............|+...|...|+++-.+..++.-..-... -.-++...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356677888888888888776553222 2222333456778888888888888654222211111111 2234566788
Q ss_pred HHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 617 LSEAMNLINSSPFSE---SPLLWRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 617 ~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
+++....++-+..+. ....-.+|.-+-.+.|++..|...|+++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888877777663322 244556677777788888888888888777
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.30 E-value=33 Score=35.22 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=61.1
Q ss_pred CCChhhhHHHHHHHHccCChhHHHHHhccCCCCC---hhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 004425 90 QNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRS---AITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVIL 166 (754)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 166 (754)
+.|...|-.||.-|...+..++.++++++|..|- ..+|..-|++-....++.....+|.+....... ...|..-|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence 4567788999999999999999999999997763 357888888888888899999999888776544 44455544
Q ss_pred HHhcc
Q 004425 167 EACSL 171 (754)
Q Consensus 167 ~~~~~ 171 (754)
.-..+
T Consensus 117 ~YIRr 121 (660)
T COG5107 117 EYIRR 121 (660)
T ss_pred HHHHh
Confidence 44433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.24 E-value=6.7 Score=35.41 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI--SILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
+..+..-|++.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..++..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444555555555555555555555544333332 344455555555555555555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.51 E-value=93 Score=39.52 Aligned_cols=338 Identities=13% Similarity=0.077 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHc-cCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccC-hhhHHHHHHHhccc
Q 004425 297 VGNAIVTMYGKHGMSEEAERMFDA-ISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCD-SSCLATVIDGCSVC 374 (754)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 374 (754)
.|..+...|+.-+++|+..-+... ...++ ...-|--....|++..|...|+.+.+. .|+ ..+++.++......
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~ 1496 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAI 1496 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcc
Confidence 344455577777777776666552 32222 223344456678888888888888765 344 56677777776666
Q ss_pred CChHHHHHHHHHHHHhCCCcchhH-HHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHH-HH-HHhhhhcCCHHHHHHH
Q 004425 375 SNLELGLQLHGFAIKHGYLSDVRL-GTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAI-LS-GFMEKIADDEEDVMVL 451 (754)
Q Consensus 375 ~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~~~~~~~~A~~~ 451 (754)
|.++...-..+-..... .+.... ++.=+.+--+.++++....... ..+..+|.+. +. ...+....+.-.-.+.
T Consensus 1497 ~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~ 1572 (2382)
T KOG0890|consen 1497 QHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDL 1572 (2382)
T ss_pred cchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHH
Confidence 66666555333333221 222222 2222333355666666665554 4455555554 22 2222001111111122
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----
Q 004425 452 FSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---- 527 (754)
Q Consensus 452 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 527 (754)
.+.+++.-+. -+.+|+..|.+ ...|..++....-+. .+.-.+.......
T Consensus 1573 i~~~r~~~i~--------~lsa~s~~~Sy------------------~~~Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s 1625 (2382)
T KOG0890|consen 1573 IENSRELVIE--------NLSACSIEGSY------------------VRSYEILMKLHLLLE-LENSIEELKKVSYDEDS 1625 (2382)
T ss_pred HHHHHHHhhh--------hHHHhhccchH------------------HHHHHHHHHHHHHHH-HHHHHHHhhccCccccc
Confidence 2222222111 11122222211 122333333222211 1111111111111
Q ss_pred -CChhHHHHHHHHHHHcCChHHHHHHHHH-HHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC
Q 004425 528 -RDIVSWNAMLSAYALHGLGKGALLLFEE-MKRE----GFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI 600 (754)
Q Consensus 528 -~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 600 (754)
.+..-|-.-+.--....+..+-+--+++ +... +++-. ..+|....+.+..+|.++.|...+-.+.+ .+ .
T Consensus 1626 ~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e-~r-~-- 1701 (2382)
T KOG0890|consen 1626 ANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE-SR-L-- 1701 (2382)
T ss_pred cccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh-cc-c--
Confidence 1112232222211111112222211222 1221 22222 23677777777778888888877766655 22 2
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC----------CCCCCHHHHHHHHHH--------H-HhcCC--hHHHHHHHHHh
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS----------PFSESPLLWRTLVSV--------S-KLMAN--SKFSILASKRL 659 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~p~~~~~~~l~~~--------~-~~~g~--~~~a~~~~~~~ 659 (754)
...+--.+..+-..|+...|+.++++. +.++.+..-+.++.. + ...|+ .+.-.+.|.++
T Consensus 1702 ~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~ 1781 (2382)
T KOG0890|consen 1702 PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDA 1781 (2382)
T ss_pred chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334556677777888888888877643 111223333333222 1 12233 34456778888
Q ss_pred hccCCCCcchHHHHH
Q 004425 660 LDLEPKDAGSFILVS 674 (754)
Q Consensus 660 ~~~~p~~~~~~~~l~ 674 (754)
.+..|.....|+.++
T Consensus 1782 ~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1782 KAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHcccccCceeeHH
Confidence 888887666666666
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.24 E-value=21 Score=33.43 Aligned_cols=59 Identities=8% Similarity=-0.049 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 637 RTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 637 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
..+.+++...|++-++++....++..+|.|..+|...+.+.+..-+.++|..-+++..+
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 33445555678888899999999999999999999999999888888888888887655
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.82 E-value=34 Score=33.70 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004425 395 DVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLS 474 (754)
Q Consensus 395 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 474 (754)
+..+....+.++.+.|+..-...+.+.+..++ .....+.++.. .|.. +|+..+..+.+. .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~--ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGE--LGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHh--cCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 44444444555555554332222223322222 12234444444 5553 566666666653 34554444444433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.48 E-value=30 Score=35.44 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC----CcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK----DAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
...+|..+...+++.|+++.|...+.++...++. .+.....-+.++...|+.++|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999987632 456777789999999999999999887766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.05 E-value=14 Score=32.57 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=21.5
Q ss_pred cCChHHHHHHHHccCCCCchhHHHHH-----HHHHhcCChhHHHHHHHHhHhc
Q 004425 308 HGMSEEAERMFDAISERNLISWTALI-----SGYVRSGHGGKAINGFLEFLDL 355 (754)
Q Consensus 308 ~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~ 355 (754)
.+..++|+.-|..+.+.+-..|-.|. ....+.|+...|+..|.+.-..
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 34444444444444443333333322 2234455555555555555443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.94 E-value=1.5 Score=38.64 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCC----chHHHHHHHHH
Q 004425 649 SKFSILASKRLLDLEPKDAGSFILVSNMYAGQGM----LDEAAKVRTTM 693 (754)
Q Consensus 649 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 693 (754)
+++|+.-+++++.++|+...++..+|++|...|. -.+|...|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 5567778888999999999999999999888764 33444555444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.90 E-value=24 Score=31.22 Aligned_cols=131 Identities=13% Similarity=0.062 Sum_probs=66.6
Q ss_pred HHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC
Q 004425 180 QIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPN 259 (754)
Q Consensus 180 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 259 (754)
+....+.+.|+.++...+..+|+.+.+.|++.....++ +.++-+|
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll-----------------------------------q~~Vi~D 59 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL-----------------------------------QYHVIPD 59 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----------------------------------hhcccCC
Confidence 34455566778888888888888888877765554444 3444444
Q ss_pred cchHHHHHHHHhccCCchHHHHHHHHHHHh-cCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHh
Q 004425 260 DYTFTNVISVCYENLGVEEGKQLHGLAVKF-GVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVR 338 (754)
Q Consensus 260 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 338 (754)
.......+-.+.. ....+.++=-+|.++ + ..+..+++.+...|++-+|.++.+....-+......++.+-.+
T Consensus 60 Sk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~ 132 (167)
T PF07035_consen 60 SKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAAN 132 (167)
T ss_pred cHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHH
Confidence 4443333322211 122222222222221 1 0134455556666677777766666544433444445555555
Q ss_pred cCChhHHHHHHHHh
Q 004425 339 SGHGGKAINGFLEF 352 (754)
Q Consensus 339 ~g~~~~A~~~~~~m 352 (754)
.+|..--..+|+-.
T Consensus 133 ~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 133 SNDDQLFYAVFRFF 146 (167)
T ss_pred cCCHHHHHHHHHHH
Confidence 55544433333333
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.86 E-value=4 Score=37.00 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=52.0
Q ss_pred hcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC----CcchHHHHHHHHHhcCCchH
Q 004425 613 RAGRLSEAMNLINSSPFSE---SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK----DAGSFILVSNMYAGQGMLDE 685 (754)
Q Consensus 613 ~~g~~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 685 (754)
+.|+ ++|.+.|-.+...| ++.....|.. +....|.++++.++.+++++.+. |+..+..|+.+|.+.|++++
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 4444 55666665553333 4555555544 44578999999999999997543 57889999999999999998
Q ss_pred HH
Q 004425 686 AA 687 (754)
Q Consensus 686 a~ 687 (754)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.81 E-value=1.2 Score=28.57 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999988755
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.68 E-value=12 Score=33.73 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=24.4
Q ss_pred HHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHH
Q 004425 642 VSKLMANSKFSILASKRLLDLEPKDAGSFILVSNM 676 (754)
Q Consensus 642 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 676 (754)
+|-....++.|+.-|+++++.+|....+-...+.+
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 45555678888888999999988865554444433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.63 E-value=9.8 Score=38.99 Aligned_cols=125 Identities=18% Similarity=0.133 Sum_probs=80.7
Q ss_pred HHHHHHcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC
Q 004425 537 LSAYALHGLGKGALL-LFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG 615 (754)
Q Consensus 537 i~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 615 (754)
|.--...|+...|-+ ++.-+....-.|+.+-+.+.| ..+.|.++.+.+.+..... -+.....+..|++..+.+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchh
Confidence 333445677766654 444444444456655444443 4677888888888877654 34455667778888888888
Q ss_pred CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 616 RLSEAMNLINSS-P-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 616 ~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
++++|...-+.| + .-.++.+...-.......|-++++...+++++.++|.
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 888888877766 1 1124555555555555667777888888888887766
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.58 E-value=1.4 Score=45.06 Aligned_cols=87 Identities=7% Similarity=0.067 Sum_probs=68.2
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHH
Q 004425 609 DLLGRAGRLSEAMNLINSS-PFSESPLLWRTL-VSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEA 686 (754)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 686 (754)
+-+.+.+.++.|..++.++ ...|+...+.+. ..++.+.+++..|+.-+.++++++|.....|+..+.++...+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3344566777888777654 566764444333 36777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 004425 687 AKVRTTMND 695 (754)
Q Consensus 687 ~~~~~~m~~ 695 (754)
...++....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 999986543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.41 E-value=0.88 Score=27.23 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 669 SFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++..++.+|.+.|++++|.+.++++.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456677777777777777777777654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.37 E-value=1.6 Score=26.38 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998754
|
... |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.19 E-value=0.53 Score=45.71 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 004425 614 AGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRT 691 (754)
Q Consensus 614 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 691 (754)
.|.+++|++.+... ...| ....+..-..++...++...|++-+..+++++|+.+..|-..+.+....|.|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45677777776543 3333 455555556667777888888888888888888888888888888888888888888888
Q ss_pred HHhhCCCccC
Q 004425 692 TMNDLRLSKE 701 (754)
Q Consensus 692 ~m~~~~~~~~ 701 (754)
.....+....
T Consensus 207 ~a~kld~dE~ 216 (377)
T KOG1308|consen 207 LACKLDYDEA 216 (377)
T ss_pred HHHhccccHH
Confidence 8777665443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.85 E-value=4.6 Score=38.93 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=73.7
Q ss_pred HhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCCC---------ChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCC
Q 004425 86 KSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVR---------SAITWTSLIKGYLDDGDYESVLGIACDMYRSEEK 156 (754)
Q Consensus 86 ~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 156 (754)
..|...++.+...++..-....+++++...+-...+. +..+|-.+ +-.-+++.++.++..=+..|+-
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccc
Confidence 3455666667777777777777888888877665321 23333332 2334677899999888899999
Q ss_pred CChhhHHHHHHHhccCCChHHHHHHHHHHHHHC
Q 004425 157 FNEHTCSVILEACSLLEDRIFGEQIHAFAIKSG 189 (754)
Q Consensus 157 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 189 (754)
||.++++.+|+.+.+.+++..|.++.-+|....
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888877665
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.80 E-value=2.1 Score=29.35 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=27.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 638 TLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 638 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
.+.-++.+.|+++.|.+..+.+++++|+|..+-..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45567789999999999999999999997665443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.78 E-value=1.6 Score=25.35 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 636 WRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 636 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
|..+...+...|+.+.|...++++++++|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 344444444555555555555555554443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.42 E-value=11 Score=34.03 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004425 500 IVGNALITMYAKCGSIDGAFQIFKGISDRD------IVSWNAMLSAYALHGLGKGALLLFEEMKR 558 (754)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 558 (754)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456778899999999999999999987643 23566788888889999999888887764
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=84.36 E-value=12 Score=31.41 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhhc-cCCC-CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 649 SKFSILASKRLLD-LEPK-DAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 649 ~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
.++++.+++.+++ -.|+ .-...+.|+-.+.+.|+++.+.+..+.+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 3444445555543 2232 1223333444455555555555555443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.08 E-value=6.6 Score=26.93 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 004425 669 SFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMKLKVK 745 (754)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 745 (754)
....++-.+.+.|++++|.+..+.+.+. .|...+.....+.+..+|.+.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 4567888999999999999999987652 44555555556666668888773
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.93 E-value=53 Score=36.14 Aligned_cols=149 Identities=13% Similarity=0.095 Sum_probs=76.4
Q ss_pred HcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 542 LHGLGKGALLLFEEMKR-------EGFAPDDISILGVLQACIYSG-----LSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 542 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
...+.+.|+.+|+.+.+ .| +......+..+|.+.. +.+.|..++.+..+ .|. |+...+ +..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g~-~~a~~~--lg~ 333 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LGN-PDAQYL--LGV 333 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cCC-chHHHH--HHH
Confidence 34455555555555544 44 2223444555555532 44556777666655 232 222222 222
Q ss_pred HHhh---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc-C
Q 004425 610 LLGR---AGRLSEAMNLINSSPFSESPLLWRTLVSVSK----LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ-G 681 (754)
Q Consensus 610 ~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g 681 (754)
++.. ..+...|.++|..............+...+. ...+.+.|...++++-+.+ ++.+...++..+.-. +
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVG 411 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccc
Confidence 2222 1345677777765533333333222222222 2347778888888887777 234455555544333 7
Q ss_pred CchHHHHHHHHHhhCCCc
Q 004425 682 MLDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 682 ~~~~a~~~~~~m~~~~~~ 699 (754)
+++.+.-.+..+.+.|.+
T Consensus 412 ~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYE 429 (552)
T ss_pred cccHHHHHHHHHHHhhhh
Confidence 777777777777665554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.68 E-value=1.9 Score=25.73 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 637 RTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 637 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
-.+..++...|+.++|...++++++..|++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 345667777889999999999999888873
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.48 E-value=1.3 Score=38.37 Aligned_cols=85 Identities=15% Similarity=0.074 Sum_probs=59.5
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHH
Q 004425 165 ILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMA 244 (754)
Q Consensus 165 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 244 (754)
+++.+.+.+.......+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777777777766667788899999999999888888888884332 3345566667777777777
Q ss_pred HHHHHHhH
Q 004425 245 FHVFVHLL 252 (754)
Q Consensus 245 ~~~~~~m~ 252 (754)
.-+|.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77776654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.34 E-value=7.6 Score=30.26 Aligned_cols=63 Identities=10% Similarity=0.019 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHH
Q 004425 139 DYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLIS 202 (754)
Q Consensus 139 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 202 (754)
+.-++.+-++.+....+.|++....+.|++|.+.+|+..|.++++-++... ..+..+|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 445677777888888889999999999999999999999999998776332 124446665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=83.15 E-value=66 Score=33.93 Aligned_cols=148 Identities=8% Similarity=0.050 Sum_probs=65.5
Q ss_pred HHHhHhcCCHhHHHHHhccCCCC----CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcch--HHHHHHHHhccC
Q 004425 201 ISMYFHSGCFREAENVFRGLAYK----DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYT--FTNVISVCYENL 274 (754)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~ 274 (754)
+...++.|+.+.+..+++.-... +..-++ .+...+..|+. ++++.+.+.|..|+... -.+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 44455667777666666543221 111122 23333444554 34444555665554332 123344444556
Q ss_pred CchHHHHHHHHHHHhcCCCChh--HHHHHHHHHHhcCChHHHHHHHHccCCCCch---hHHHHHHHHHhcCChhHHHHHH
Q 004425 275 GVEEGKQLHGLAVKFGVVREIS--VGNAIVTMYGKHGMSEEAERMFDAISERNLI---SWTALISGYVRSGHGGKAINGF 349 (754)
Q Consensus 275 ~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~ 349 (754)
+.+.+.. +.+.|..++.. ...+.+...+..|+.+-+.-+++.-..++.. ...+.+...+..|+. ++.
T Consensus 147 ~~~~v~~----Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv 218 (413)
T PHA02875 147 DIKGIEL----LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIV 218 (413)
T ss_pred CHHHHHH----HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHH
Confidence 6544333 33444433221 1122334445566666666555544433221 112333333444443 334
Q ss_pred HHhHhcCcccCh
Q 004425 350 LEFLDLGICCDS 361 (754)
Q Consensus 350 ~~m~~~g~~p~~ 361 (754)
+-+.+.|..++.
T Consensus 219 ~~Ll~~gad~n~ 230 (413)
T PHA02875 219 RLFIKRGADCNI 230 (413)
T ss_pred HHHHHCCcCcch
Confidence 444556655543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=82.52 E-value=89 Score=35.00 Aligned_cols=51 Identities=12% Similarity=0.192 Sum_probs=25.7
Q ss_pred HcCChhHHHHHHHHhHHCCC---------CCCcchHHHHHHHHh--ccCCchHHHHHHHHHH
Q 004425 237 KAGESEMAFHVFVHLLSSDF---------EPNDYTFTNVISVCY--ENLGVEEGKQLHGLAV 287 (754)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~g~---------~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~ 287 (754)
+.+..+++++..+++..... .|-..+|..+++.++ ..|+++.+.+.++++.
T Consensus 191 ~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 191 RRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445666666665532111 223345556665554 4556556665555543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=81.97 E-value=93 Score=34.85 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=34.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhccC---CCCc-chH-----HHHHHHHHhcCCchHHHHHHHHHh
Q 004425 638 TLVSVSKLMANSKFSILASKRLLDLE---PKDA-GSF-----ILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 638 ~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~-~~~-----~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
+++..-.-.|+..+..........+. |+.. ..| ..+.+.|...|+.++|..++++..
T Consensus 539 ~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 539 NLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 34444444677777666655555433 3312 233 245556888899999999887653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.81 E-value=33 Score=31.03 Aligned_cols=91 Identities=11% Similarity=-0.007 Sum_probs=63.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 606 CMVDLLGRAGRLSEAMNLINSSPFSESPLLWR-----TLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
.+...+..+|++++|+.-++..-..|....+. -|.+.....|..++|...+....+-.= .+..-...|+++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 45667788999999999998553233222333 344566677888888877665433211 233467889999999
Q ss_pred CCchHHHHHHHHHhhCC
Q 004425 681 GMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 681 g~~~~a~~~~~~m~~~~ 697 (754)
|+-++|+..|++..+..
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999876644
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.73 E-value=92 Score=34.66 Aligned_cols=47 Identities=13% Similarity=0.275 Sum_probs=26.4
Q ss_pred HHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChh
Q 004425 196 VGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESE 242 (754)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 242 (754)
+....|+.+.-.|++++|-...-.|...+..-|---+..+...++..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 44455555555666666666666665555555555555555554443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.14 E-value=14 Score=35.81 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=74.8
Q ss_pred hcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC-C------CchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccCh
Q 004425 289 FGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE-R------NLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDS 361 (754)
Q Consensus 289 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 361 (754)
.|.+....+...++..-....+++.++..+-++.. + +...+ +.++ ++-.-++++++.++..=+.-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccch
Confidence 45555666666777766667788888888777654 2 22222 2223 33344677999999999999999999
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHhC
Q 004425 362 SCLATVIDGCSVCSNLELGLQLHGFAIKHG 391 (754)
Q Consensus 362 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 391 (754)
++++.+|..+.+.+++..|.++.-.|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999998888877654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.02 E-value=4.2 Score=37.63 Aligned_cols=84 Identities=7% Similarity=-0.034 Sum_probs=42.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCccH-HHHHHHHHhhcCCHHHHHHHHH-hCCCCCCHHHH-HHHHHHHHhcCChHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYGLRPILEH-FACMVDLLGRAGRLSEAMNLIN-SSPFSESPLLW-RTLVSVSKLMANSKF 651 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~-~~~~~p~~~~~-~~l~~~~~~~g~~~~ 651 (754)
|.....++.|+..|.+.. -+.|++.+ |..-+.++.+..+++.+..--. ...+.|+..-- ..+..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 455556666666555553 45566543 3344555555555555544332 22444443222 223333344456666
Q ss_pred HHHHHHHhhc
Q 004425 652 SILASKRLLD 661 (754)
Q Consensus 652 a~~~~~~~~~ 661 (754)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.44 E-value=62 Score=31.85 Aligned_cols=75 Identities=11% Similarity=-0.018 Sum_probs=43.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004425 497 ADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACI 576 (754)
Q Consensus 497 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 576 (754)
++..+-...+.++++.|+....-.+.+.+..+++ .-..+.++...|.. +|+..+.++.+ -.||...-...+.+|.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKLK 278 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHHh
Confidence 4555566666777777775444444444444442 23566777777774 67777777776 3356655555555543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 2e-08
Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 7/142 (4%)
Query: 451 LFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYA 510
L R A P +RLL + + L ++ + + A
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 511 KCGSIDGAFQIFKGISDR-------DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP 563
+ A + + + +NA++ +A G K + + +K G P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 564 DDISILGVLQACIYSGLSEGGI 585
D +S LQ G I
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTI 220
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.1 bits (97), Expect = 7e-04
Identities = 12/179 (6%), Positives = 52/179 (29%), Gaps = 10/179 (5%)
Query: 150 MYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGC 209
++ E E + +L+ + ++ + +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 210 FREAENVFRGLAYK-------DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYT 262
A ++ + + N ++L + + G + +V + + P+ +
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 263 FTNVISVCYENLGVEEG--KQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFD 319
+ + C + G ++ + G+ + +++ + + + ++
Sbjct: 203 YAAALQ-CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 2e-05
Identities = 78/562 (13%), Positives = 153/562 (27%), Gaps = 155/562 (27%)
Query: 1 MHTLLPAN--LLQPPFKSQQSLPPLKKKVPI-------NTFSPNPKSQVAYLCSISSVSC 51
+ +L N L P K++Q P + ++ I N K V+ L +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-- 140
Query: 52 SERTLLFNDWPQLVKISI----GSG----------DLKLGQAV--HAFLLKSGSQNDTFE 95
R L P + I GSG K+ + F L + N
Sbjct: 141 --RQALLELRPAK-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 96 A-NNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSE 154
L L + + ++ + + + ++ L YE+ L + ++ ++
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 155 --EKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCF-- 210
FN +C + LL R K + T+ IS+ HS
Sbjct: 258 AWNAFN-LSCKI------LLTTRF----------KQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 211 REAENVFRGLAYKDVRCVNFMI--LEYNKAGESEMAFHVFVHLLSSDFEPNDY------- 261
E +++ + ++ L + + + D
Sbjct: 301 DEVKSLLL-------KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 262 TFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDA- 320
T +I L E +++ + V A
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMF---DRLSVFPP------------------------SAH 386
Query: 321 ISERNL-ISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLEL 379
I L + W +I V ++ S + E
Sbjct: 387 IPTILLSLIWFDVIKSDVM------------VVVNK--LHKYSLVE--------KQPKES 424
Query: 380 GLQLHG--FAIKHGYLSDVRLGTALVDIYAKGGDLKSARML---LDGFSCKY-------- 426
+ + +K ++ L ++VD Y S ++ LD + +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 427 -----TAEFNAILS--GFME-KIADD------EEDVMVLFSQQRLAG---MEPDPVTFSR 469
F + F+E KI D ++ Q + + DP + R
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP-KYER 543
Query: 470 LLS-----LSASQACLVRGRSL 486
L++ L + L+ +
Sbjct: 544 LVNAILDFLPKIEENLICSKYT 565
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 6e-04
Identities = 76/543 (13%), Positives = 152/543 (27%), Gaps = 155/543 (28%)
Query: 4 LLPANLLQPPFKS-------QQSLPPLKKKVPINTF--SPNPKSQVAYLCSISSVSCSER 54
+L + F Q + K I+ S + S L
Sbjct: 21 ILSVF--EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF---------- 68
Query: 55 TLLFNDWPQLVKISIGSGDLK----LGQAVHAFLLKSGSQNDTFEA--NNLIN---LYAK 105
L + ++V+ + L + + + + L N ++AK
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 106 FN--RLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIA-CDMYRSEEKFNEHTC 162
+N RL KL R A L++ L + G+ K T
Sbjct: 129 YNVSRLQPYLKL------RQA-----LLE--LRPAKNVLIDGVLGSG------K----TW 165
Query: 163 SVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAY 222
V L+ C ++ ++ + +F + + E V L
Sbjct: 166 -VALDVCL------------SYKVQCKMDFKIF--------WLNLKNCNSPETVLEML-- 202
Query: 223 KDVRCVNF-MILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYEN-L----GV 276
++ N S+ + ++ + + S E + YEN L V
Sbjct: 203 -----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----YENCLLVLLNV 253
Query: 277 EEGKQLHGLAVKFGVV---REISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALI 333
+ K + + ++ R V + + H + ++L
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL------- 306
Query: 334 SGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHG-- 391
L++LD C L V + L + +I+ G
Sbjct: 307 ---------------LLKYLD----CRPQDLPR-----EVLTTNPRRLSIIAESIRDGLA 342
Query: 392 ------YLSDVRLGTALVDIYAKGGDLKSA--RMLLDGFS-----CKYTAEFNAILSGFM 438
+++ +L T + L+ A R + D S +++ +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNV---LEPAEYRKMFDRLSVFPPSAHIPTILLSLI--WF 397
Query: 439 EKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGR-SLH-----AYSIK 492
+ I D V+ + L +P T S + S+ + +LH Y+I
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 493 TGY 495
+
Sbjct: 457 KTF 459
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 9e-04
Identities = 24/209 (11%), Positives = 63/209 (30%), Gaps = 10/209 (4%)
Query: 75 KLGQAVHAFLLKSGSQNDTFEANNLI-NLYAKFNRLDVAQKLFDGML---VRSAITWTSL 130
K + + L++ G L +Y + D A++ + L + + L
Sbjct: 181 KDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240
Query: 131 IKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIK-SG 189
+ +L D E L + + ++ S+ + + + + +G
Sbjct: 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300
Query: 190 FENNVFVGTSLISMYFHSGCFREAENVFRGLAYKD---VRCVNFMILEYNKAGESEMAFH 246
E + + F F + + + D + + +++GE +
Sbjct: 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYL 360
Query: 247 VFVHLLSSDFEPNDYTFTNVISVCYENLG 275
+ L+ P + + Y +
Sbjct: 361 ISNDLVDRH--PEKAVTWLAVGIYYLCVN 387
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 754 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.5 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.5 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.44 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.44 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.42 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.37 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.33 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.31 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.31 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.3 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.29 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.28 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.24 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.23 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.22 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.22 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.15 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.13 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.12 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.09 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.08 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.05 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.03 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.02 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.99 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.99 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.92 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.92 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.91 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.89 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.88 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.86 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.84 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.82 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.82 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.82 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.8 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.8 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.74 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.73 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.72 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.71 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.7 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.69 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.67 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.65 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.65 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.64 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.64 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.63 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.62 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.62 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.6 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.58 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.54 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.52 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.51 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.51 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.5 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.5 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.5 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.49 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.48 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.47 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.44 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.43 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.43 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.43 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.41 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.4 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.4 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.4 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.4 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.38 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.36 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.36 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.35 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.33 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.33 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.33 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.32 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.3 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.29 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.29 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.28 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.28 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.26 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.25 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.25 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.21 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.21 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.2 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.18 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.18 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.16 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.15 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.15 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.15 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.15 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.14 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.14 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.14 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.13 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.11 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.11 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.1 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.07 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.06 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.02 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.02 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.02 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.0 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.98 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.92 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.91 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.9 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.89 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.88 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.81 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.75 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.71 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.67 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.66 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.53 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.51 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.47 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.38 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.36 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.11 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.06 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.06 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.05 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.05 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.0 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.94 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.94 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.8 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.62 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.59 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.47 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.47 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.45 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.95 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.9 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.86 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.78 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.72 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.38 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.34 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.24 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.88 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.65 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.18 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.95 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.27 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.79 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.42 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.06 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.5 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.43 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.34 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 90.19 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.79 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.29 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.84 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.18 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.24 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 87.13 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.1 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.62 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.56 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.06 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.01 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.0 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.8 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.09 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.23 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.46 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.2 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 80.03 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=375.44 Aligned_cols=499 Identities=8% Similarity=-0.058 Sum_probs=343.6
Q ss_pred HHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHH
Q 004425 103 YAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIH 182 (754)
Q Consensus 103 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 182 (754)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45667778888889999889999999999999999999999999999984 5678899999999999999999999999
Q ss_pred HHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC-------------------CcchHHHHHHHHHHcCChhH
Q 004425 183 AFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYK-------------------DVRCVNFMILEYNKAGESEM 243 (754)
Q Consensus 183 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 243 (754)
+.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987543 688999999999999999999999999965433 37799999999999999999
Q ss_pred HHHHHHHhHHCCCCCCc-chHHHHHHHHhccCCchH--HHHH-HHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 004425 244 AFHVFVHLLSSDFEPND-YTFTNVISVCYENLGVEE--GKQL-HGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFD 319 (754)
Q Consensus 244 A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 319 (754)
|+++|++|.+.+ |+. ..+..+...+...+..+. +..+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998864 443 334444433332222111 1111 4444445555566777888888999999999999999
Q ss_pred ccCC--CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchh
Q 004425 320 AISE--RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVR 397 (754)
Q Consensus 320 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 397 (754)
++.+ ++..+|+.++.+|.+.|++++|+.+|+++.+.+. .+..++..++..+...|++++|..+++.+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9987 7889999999999999999999999999987642 366778888888888888888888888777543 34455
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 004425 398 LGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQ 477 (754)
Q Consensus 398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 477 (754)
+++.++.+|.++|++ ++|.++|+++.+. .|+
T Consensus 375 ~~~~l~~~~~~~g~~---------------------------------~~A~~~~~~~~~~--~~~-------------- 405 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKI---------------------------------SEARRYFSKSSTM--DPQ-------------- 405 (597)
T ss_dssp HHHHHHHHHHHTTCH---------------------------------HHHHHHHHHHHHH--CTT--------------
T ss_pred HHHHHHHHHHHhccH---------------------------------HHHHHHHHHHHHh--CCC--------------
Confidence 566666666655555 4555555554432 111
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 004425 478 ACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS---DRDIVSWNAMLSAYALHGLGKGALLLFE 554 (754)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 554 (754)
+..+|+.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+
T Consensus 406 --------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 406 --------------------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12222333333333333333333333321 1234455555555555566666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---CCCCC--ccHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 004425 555 EMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIY---GLRPI--LEHFACMVDLLGRAGRLSEAMNLINSS-P 628 (754)
Q Consensus 555 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 628 (754)
++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ .
T Consensus 466 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 466 SSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 665532 1134556666666666666666666666665521 44555 456677777777777777777777654 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 629 F-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 629 ~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
. +.++.+|..+..+|...|++++|...++++++++|+++..+..|+++|..
T Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 2 33789999999999999999999999999999999999999999998754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=374.94 Aligned_cols=480 Identities=11% Similarity=-0.005 Sum_probs=401.8
Q ss_pred hHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHH
Q 004425 204 YFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLH 283 (754)
Q Consensus 204 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 283 (754)
+.+.|.+..+...|..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 34567777888888888888999999999999999999999999999985 4678899999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCC-------------------CchhHHHHHHHHHhcCChhH
Q 004425 284 GLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISER-------------------NLISWTALISGYVRSGHGGK 344 (754)
Q Consensus 284 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 344 (754)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987543 678999999999999999999999999965433 47899999999999999999
Q ss_pred HHHHHHHhHhcCcccCh-hhHHHHHHHhcccCChHHH--HHH-HHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHh
Q 004425 345 AINGFLEFLDLGICCDS-SCLATVIDGCSVCSNLELG--LQL-HGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLD 420 (754)
Q Consensus 345 A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (754)
|++.|++|.+.+ |+. ..+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998853 443 3444444444433322221 111 4455555556666778888999999999999999999
Q ss_pred cCCC--CChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCc
Q 004425 421 GFSC--KYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAAD 498 (754)
Q Consensus 421 ~~~~--~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 498 (754)
++.. ++..+|+.++.+|.+ .|++++|+++|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFV--RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HhhcCCchHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 9986 889999999999999 999999999999999875 3366789999999999999999999999999764 567
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004425 499 VIVGNALITMYAKCGSIDGAFQIFKGIS---DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQAC 575 (754)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 575 (754)
..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 8899999999999999999999999875 3567899999999999999999999999999843 23668999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhc
Q 004425 576 IYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-------PFSES--PLLWRTLVSVSKLM 646 (754)
Q Consensus 576 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~ 646 (754)
.+.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...
T Consensus 452 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 9999999999999999873 3446789999999999999999999999876 45776 88999999999999
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 647 ANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 647 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=261.28 Aligned_cols=210 Identities=13% Similarity=0.120 Sum_probs=144.7
Q ss_pred hHHHHHHHHHHhCCCCCCh-hhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhcc
Q 004425 141 ESVLGIACDMYRSEEKFNE-HTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRG 219 (754)
Q Consensus 141 ~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 219 (754)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 3455666777777776554 357888999999999999999999999999999999999999999887764432
Q ss_pred CCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHH
Q 004425 220 LAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGN 299 (754)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 299 (754)
.+.+..++|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2344578899999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHhcCChHHHHHHHHccCC----CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhc
Q 004425 300 AIVTMYGKHGMSEEAERMFDAISE----RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCS 372 (754)
Q Consensus 300 ~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 372 (754)
+||.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 877777777666666666555532 4444555555555555555555555555555555555555554444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=258.55 Aligned_cols=185 Identities=14% Similarity=0.127 Sum_probs=170.5
Q ss_pred hhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCC---------hHHHHHHHHHHHHHCCCCcH
Q 004425 124 AITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLED---------RIFGEQIHAFAIKSGFENNV 194 (754)
Q Consensus 124 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~m~~~g~~~~~ 194 (754)
...++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888999999999999999999999999999999999999999987654 67899999999999999999
Q ss_pred HHHHHHHHHhHhcCCHhHHHHHhccCC----CCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 004425 195 FVGTSLISMYFHSGCFREAENVFRGLA----YKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVC 270 (754)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 270 (754)
.+||+||++|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999886 4688899999999999999999999999999999999999999999999
Q ss_pred hccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 004425 271 YENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKH 308 (754)
Q Consensus 271 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 308 (754)
++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999888763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-25 Score=233.78 Aligned_cols=372 Identities=12% Similarity=0.048 Sum_probs=266.7
Q ss_pred HHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcCChh
Q 004425 267 ISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTALISGYVRSGHGG 343 (754)
Q Consensus 267 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 343 (754)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++.... .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 344556677777777776666543 33344555555666666666666666655432 24456666666666666666
Q ss_pred HHHHHHHHhHhcCcccCh-hhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcC
Q 004425 344 KAINGFLEFLDLGICCDS-SCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGF 422 (754)
Q Consensus 344 ~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 422 (754)
+|+..|+++.+. .|+. .++..+...+...|+++.|...+..+.+..
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------------- 131 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN------------------------------- 131 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------------
Confidence 666666666553 2332 244555555555555555555555554432
Q ss_pred CCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhH
Q 004425 423 SCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPD-PVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIV 501 (754)
Q Consensus 423 ~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 501 (754)
+.+...+..+...+.. .|++++|.+.|+++.+. .|+ ..+|..+...+...|++++|...++++.+.+ +.+...
T Consensus 132 -p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 132 -PDLYCVRSDLGNLLKA--LGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp -TTCTHHHHHHHHHHHT--TSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred -CCcHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 1222334444445555 66666667767666654 333 4566677777777777777777777777654 345667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 004425 502 GNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIY 577 (754)
Q Consensus 502 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 577 (754)
+..+...+...|++++|...|++..+ .+..+|..+..+|...|++++|+..|+++.+ ..|+ ..++..+..++.+
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHH
Confidence 77788888888888888888887642 3567888999999999999999999999998 5565 4688899999999
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILA 655 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 655 (754)
.|++++|...|+++.+. .+.+...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...
T Consensus 284 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999873 4556788999999999999999999999876 4445 588999999999999999999999
Q ss_pred HHHhhccCCCCcchHHHHHHHHHhcCC
Q 004425 656 SKRLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 656 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
++++++++|+++.+|..++.+|...|+
T Consensus 362 ~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999988774
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-25 Score=229.94 Aligned_cols=351 Identities=14% Similarity=0.113 Sum_probs=293.2
Q ss_pred HHHHHhcCChhHHHHHHHHhHhcCcccChh-hHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCC
Q 004425 333 ISGYVRSGHGGKAINGFLEFLDLGICCDSS-CLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGD 411 (754)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 411 (754)
...+.+.|++++|++.+.++.+. .|+.. .+..+...+...|+++.|...++..++.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34556677777777777776654 34433 34444555667778888888777777653 4566778888888888888
Q ss_pred HHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcccchHHHHHHH
Q 004425 412 LKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP-VTFSRLLSLSASQACLVRGRSLH 487 (754)
Q Consensus 412 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~ 487 (754)
+++|...|+++. +.+...|..+...+.. .|++++|+..|+++.+. .|+. ..+..+...+...|++++|...+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVA--AGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 888888888764 4455678888889999 99999999999999876 5665 45677788889999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 004425 488 AYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD 564 (754)
Q Consensus 488 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 564 (754)
.++.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+ +.|+
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~ 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPN 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcC
Confidence 9999874 44678899999999999999999999998853 3567899999999999999999999999998 5565
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 004425 565 -DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVS 641 (754)
Q Consensus 565 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~ 641 (754)
..++..+..++...|++++|...|+++.+ -.+.+...|..++.+|.+.|++++|++.++++ ..+++..+|..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 56889999999999999999999999977 22334678999999999999999999999876 23347899999999
Q ss_pred HHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 642 VSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 642 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.+...|++++|...+++++++.|+++..+..++.+|...|++++|...++++.+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998865
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-22 Score=219.49 Aligned_cols=437 Identities=10% Similarity=-0.048 Sum_probs=213.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004425 227 CVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYG 306 (754)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 306 (754)
.|......+.+.|++++|+..|+++.+.+ |+..++..+..++...|++++|.+.++.+++.. +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34445566667777777777777776653 566677777777777777777777777776654 334556666677777
Q ss_pred hcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHH
Q 004425 307 KHGMSEEAERMFDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQL 383 (754)
Q Consensus 307 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 383 (754)
+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 77777777777666542 222333333333333222222222222222221112111111100000000000000000
Q ss_pred HHHHHHhCC---------CcchhHHHHHHHHHHh---CCCHHHHHHHHhcCCC-----------------CChhhHHHHH
Q 004425 384 HGFAIKHGY---------LSDVRLGTALVDIYAK---GGDLKSARMLLDGFSC-----------------KYTAEFNAIL 434 (754)
Q Consensus 384 ~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----------------~~~~~~~~li 434 (754)
...+..... +.+...+..+...+.. .|++++|...|+++.. .+...|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 000000000 1112222222222222 4555555555443322 0122344445
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 004425 435 SGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGS 514 (754)
Q Consensus 435 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 514 (754)
..+.. .|++++|+..|+++.+.. |+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|+
T Consensus 245 ~~~~~--~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 245 IFKFL--KNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHH--SSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHH--CCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 55555 566666666666655542 334455555555666666666666666655543 2344555556666666666
Q ss_pred HHHHHHHHhccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004425 515 IDGAFQIFKGIS---DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNE 590 (754)
Q Consensus 515 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 590 (754)
+++|...|+.+. ..+...|..+...|...|++++|+..++++.+. .| +...+..+...+...|++++|..++++
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666665542 123445555666666666666666666666552 23 234555555566666666666666666
Q ss_pred HHHHhCCCCC----ccHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 591 IEQIYGLRPI----LEHFACMVDLLGR---AGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 591 ~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
+.+...-.++ ...+..++.++.+ .|++++|.+.++++ ...| +..+|..+...+...|+.++|...++++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5442211121 2255556666666 66666666665543 1122 455555666666666666666666666666
Q ss_pred cCCCCcchHHHH
Q 004425 662 LEPKDAGSFILV 673 (754)
Q Consensus 662 ~~p~~~~~~~~l 673 (754)
++|+++..+..+
T Consensus 478 ~~~~~~~~~~~~ 489 (514)
T 2gw1_A 478 LARTMEEKLQAI 489 (514)
T ss_dssp HCSSHHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 666655554444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-22 Score=217.58 Aligned_cols=424 Identities=9% Similarity=-0.022 Sum_probs=315.8
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHHHHHHHh
Q 004425 262 TFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTALISGYVR 338 (754)
Q Consensus 262 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 338 (754)
.+......+.+.|++++|...|+.+++.. |+..++..+..+|.+.|++++|...|+++.+ .+..+|..+..+|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45566677888999999999999999876 6889999999999999999999999998764 356788999999999
Q ss_pred cCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHH---HHHHHhCCCHHHH
Q 004425 339 SGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTAL---VDIYAKGGDLKSA 415 (754)
Q Consensus 339 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A 415 (754)
.|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+......- ............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999988753 34444445554444333333333333222222111111111000 0001111112222
Q ss_pred HHHHhcCC---------CCC-hhhHHHHHHHHh---hhhcCCHHHHHHHHHHHHH-----cCCCC--------CHHHHHH
Q 004425 416 RMLLDGFS---------CKY-TAEFNAILSGFM---EKIADDEEDVMVLFSQQRL-----AGMEP--------DPVTFSR 469 (754)
Q Consensus 416 ~~~~~~~~---------~~~-~~~~~~li~~~~---~~~~~~~~~A~~~~~~m~~-----~g~~p--------~~~~~~~ 469 (754)
...+.... .++ ...+......+. . .|++++|+..|+++.+ ..-.| +..++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS--PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCC--TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 22222221 111 223333322222 3 6999999999999987 32122 2356778
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCCh
Q 004425 470 LLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLG 546 (754)
Q Consensus 470 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 546 (754)
+...+...|+++.|...++.+.+..-. ...+..+...|...|++++|...|+.+.+ .+...|..+...|...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 888899999999999999999987633 88889999999999999999999998754 4667899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHH
Q 004425 547 KGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLIN 625 (754)
Q Consensus 547 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 625 (754)
++|+..|+++.+ ..|+ ...+..+...+...|++++|..+++.+.+. .+.+...+..++.+|.+.|++++|.+.++
T Consensus 321 ~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 321 DQAGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp THHHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998 4454 568888999999999999999999999873 33456789999999999999999999998
Q ss_pred hC----CCCCC----HHHHHHHHHHHHh---cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 626 SS----PFSES----PLLWRTLVSVSKL---MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 626 ~~----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
++ +..++ ...|..+...+.. .|++++|...++++++.+|+++.++..++.+|...|++++|...+++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 76 22232 4489999999999 9999999999999999999999999999999999999999999999886
Q ss_pred hC
Q 004425 695 DL 696 (754)
Q Consensus 695 ~~ 696 (754)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 63
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-21 Score=206.76 Aligned_cols=335 Identities=10% Similarity=0.004 Sum_probs=252.5
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 004425 325 NLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVD 404 (754)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 404 (754)
+...|..+...+.+.|++++|+..|+++.+. .+.+..++..+...+...|+++.|...++.+.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 4567888888888888888888888888764 22356667777777777788888888887777754 234556666666
Q ss_pred HHHhCCCHHHHHHHHhcCCCC---Ch---hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 004425 405 IYAKGGDLKSARMLLDGFSCK---YT---AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQA 478 (754)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 478 (754)
+|.+.|++++|...|+++... +. ..|..++..+.. . .+..+...+...|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM--Q-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH--H-----------------------HHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH--H-----------------------HHHHHHHHHHHcC
Confidence 666666666666666554321 11 333333332211 0 1122234466778
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004425 479 CLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEE 555 (754)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 555 (754)
++++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..++..|...|++++|+..|++
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888887754 45677888899999999999999999988753 5678899999999999999999999999
Q ss_pred HHHcCCCCCHH-HHHHH------------HHHHHhcCCHHHHHHHHHHHHHHhCCCCC-----ccHHHHHHHHHhhcCCH
Q 004425 556 MKREGFAPDDI-SILGV------------LQACIYSGLSEGGICLFNEIEQIYGLRPI-----LEHFACMVDLLGRAGRL 617 (754)
Q Consensus 556 m~~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~ 617 (754)
+.+ ..|+.. .+..+ ..+|.+.|++++|..+|+++.+. .|+ ..++..++.++.+.|++
T Consensus 237 ~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 237 CLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 997 556654 33333 78899999999999999999773 344 45788999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHH------------HHHHhcC--
Q 004425 618 SEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVS------------NMYAGQG-- 681 (754)
Q Consensus 618 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-- 681 (754)
++|++.++++ ...| +..+|..++.+|...|++++|...++++++++|+++..+..++ +.|...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 9999999876 3344 7899999999999999999999999999999999999999999 4566666
Q ss_pred ---CchHHHHHHHH
Q 004425 682 ---MLDEAAKVRTT 692 (754)
Q Consensus 682 ---~~~~a~~~~~~ 692 (754)
+.+++.+.+++
T Consensus 392 ~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 392 RNAKKQEIIKAYRK 405 (450)
T ss_dssp TTCCTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 45566666665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-21 Score=209.65 Aligned_cols=420 Identities=13% Similarity=0.009 Sum_probs=238.4
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004425 226 RCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMY 305 (754)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 305 (754)
..|..+...+.+.|++++|++.|+++.+... .+..++..+..++...|++++|.+.++.+++.. +.+..++..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3456666777788888888888888776532 255667777777778888888888888877764 34566777777788
Q ss_pred HhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcC------cccChhhHHHHHHHhcccCChHH
Q 004425 306 GKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLG------ICCDSSCLATVIDGCSVCSNLEL 379 (754)
Q Consensus 306 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~ 379 (754)
...|++++|...|+.+. .+....+..+..+...+...+|+..++++.... ..|+...+
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~--------------- 167 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL--------------- 167 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH---------------
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH---------------
Confidence 88888888888876442 222222233444555555567777777765431 12222222
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChh---hHHHHHHHHhhh------hcCCHHHHHH
Q 004425 380 GLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTA---EFNAILSGFMEK------IADDEEDVMV 450 (754)
Q Consensus 380 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~------~~~~~~~A~~ 450 (754)
..+....+.+.+...+......+.. .+..+...+... ..|++++|+.
T Consensus 168 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 168 ------------------------ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp ------------------------HHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2222233333333333333322211 111111111110 0235566666
Q ss_pred HHHHHHHcCCCCCH--------HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004425 451 LFSQQRLAGMEPDP--------VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIF 522 (754)
Q Consensus 451 ~~~~m~~~g~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 522 (754)
+|+++.+. .|+. .++..+...+...|+++.|...++.+.+.. |+...+..+...|...|++++|...|
T Consensus 224 ~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 224 MYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 66666543 3331 134444455556666666666666666543 33555666666666666666666666
Q ss_pred hccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCC
Q 004425 523 KGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLR 598 (754)
Q Consensus 523 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 598 (754)
+.+.+ .+..+|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|++++|..+++++.+. .+
T Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~ 375 (537)
T 3fp2_A 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FP 375 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 65532 34456666666666666666666666666663 333 345666666666666777777666666552 23
Q ss_pred CCccHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhc----------CChHHHHHHHHHhh
Q 004425 599 PILEHFACMVDLLGRAGRLSEAMNLINSS----PFSE----SPLLWRTLVSVSKLM----------ANSKFSILASKRLL 660 (754)
Q Consensus 599 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~ 660 (754)
.+...+..++.+|...|++++|.+.++++ +..+ ....+..+...+... |++++|...+++++
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 33456666666666667777766666553 1011 122233444555555 77777777777777
Q ss_pred ccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 661 DLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 661 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+.+|+++.++..++.+|...|++++|...+++..+
T Consensus 456 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777777777777777777777777777776654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-20 Score=199.91 Aligned_cols=347 Identities=11% Similarity=0.014 Sum_probs=267.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHH
Q 004425 292 VREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVI 368 (754)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 368 (754)
+.+...+..+...|.+.|++++|..+|+++.+ .+..+|..+..+|...|++++|+..|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 45678899999999999999999999998864 467899999999999999999999999998864 23467888899
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCcch---hHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCH
Q 004425 369 DGCSVCSNLELGLQLHGFAIKHGYLSDV---RLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDE 445 (754)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 445 (754)
..+...|+++.|...++.+.+.. +.+. ..+..+...+...+.+ .+...+.. .|++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~-------------------~~a~~~~~--~~~~ 159 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLR-------------------SQALNAFG--SGDY 159 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHH--HTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHH-------------------HHHHHHHH--cCCH
Confidence 99999999999999999998754 2333 5666665554332222 22334445 7888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 004425 446 EDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGI 525 (754)
Q Consensus 446 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 525 (754)
++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888887652 3355677777888888888888888888887653 446777888888888888888888888877
Q ss_pred CC--C-ChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHH
Q 004425 526 SD--R-DIVSWNAM------------LSAYALHGLGKGALLLFEEMKREGFAPD-----DISILGVLQACIYSGLSEGGI 585 (754)
Q Consensus 526 ~~--~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~ 585 (754)
.+ | +...+..+ ...+...|++++|+.+|+++.+ +.|+ ...+..+..++.+.|++++|.
T Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 43 3 33444444 7888999999999999999998 4565 336778888999999999999
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHhcC----
Q 004425 586 CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSV------------SKLMA---- 647 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~------------~~~~g---- 647 (754)
.+++++.+. .+.+...|..++.+|...|++++|.+.++++ ...| ++..+..+..+ +...|
T Consensus 316 ~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 316 RVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 999998762 2335678889999999999999999999876 4555 57777777633 33334
Q ss_pred -ChHHHHHHHHH-hhccCCCCc
Q 004425 648 -NSKFSILASKR-LLDLEPKDA 667 (754)
Q Consensus 648 -~~~~a~~~~~~-~~~~~p~~~ 667 (754)
+.+++.+.+++ +++.+|++.
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGC
T ss_pred CCHHHHHHHHHHHHHHhCCCCC
Confidence 66778888886 788888743
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-19 Score=197.71 Aligned_cols=231 Identities=12% Similarity=0.032 Sum_probs=186.9
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 004425 435 SGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGS 514 (754)
Q Consensus 435 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 514 (754)
..+.. .|++++|+..|++..+. .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|+
T Consensus 251 ~~~~~--~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 251 IFHFL--KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh--cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 34444 78888888888888876 5667788888888999999999999999998865 4467888999999999999
Q ss_pred HHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004425 515 IDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNE 590 (754)
Q Consensus 515 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 590 (754)
+++|...|+++.+ .+...|..+...|...|++++|+..++++.+. .|+ ...+..+...+...|++++|...|++
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999998753 45678999999999999999999999999984 454 46888899999999999999999999
Q ss_pred HHHHhCCCCC----ccHHHHHHHHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 004425 591 IEQIYGLRPI----LEHFACMVDLLGRA----------GRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSIL 654 (754)
Q Consensus 591 ~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 654 (754)
+.+...-.+. ...+..+..+|.+. |++++|.+.++++ ...| +..+|..+...+...|+.++|..
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 8773211121 12245566778888 9999999999876 2234 68899999999999999999999
Q ss_pred HHHHhhccCCCCcchHHH
Q 004425 655 ASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 655 ~~~~~~~~~p~~~~~~~~ 672 (754)
.+++++++.|++......
T Consensus 484 ~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 484 LFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHH
Confidence 999999999997765443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-16 Score=172.32 Aligned_cols=347 Identities=10% Similarity=0.054 Sum_probs=216.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHccCC-CC-----chhHHHHHHH---------------------------HHhcCChhH
Q 004425 298 GNAIVTMYGKHGMSEEAERMFDAISE-RN-----LISWTALISG---------------------------YVRSGHGGK 344 (754)
Q Consensus 298 ~~~li~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~---------------------------~~~~g~~~~ 344 (754)
....++.|...|.+.+|+++++++.- ++ ...-+.++.+ +...|.+++
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEE 1067 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHH
Confidence 35566789999999999999999863 22 2333334433 444555555
Q ss_pred HHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCC
Q 004425 345 AINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSC 424 (754)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 424 (754)
|..+|++.. -.....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++|.+.|.+.
T Consensus 1068 Af~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1068 AFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 555555531 01111111211 344555555555433 23455666666666666666666666443
Q ss_pred CChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHH
Q 004425 425 KYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNA 504 (754)
Q Consensus 425 ~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 504 (754)
.|...|..++..+.+ .|++++|++.|....+.. ++....+.+..+|++.++++....+. + .++...+..
T Consensus 1132 dD~say~eVa~~~~~--lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANT--SGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQ 1200 (1630)
T ss_pred CChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHH
Confidence 455556666666666 666666666666555432 33222334666666666665433332 1 234444555
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004425 505 LITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGG 584 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 584 (754)
+.+.|...|++++|..+|... ..|..+..+|.+.|++++|++.+++. .+..+|..+..+|...|.+..|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHH
Confidence 666666667777777776664 35666777777777777777766654 2345666666777777776666
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CChHHHHHHHHHhh
Q 004425 585 ICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLM--ANSKFSILASKRLL 660 (754)
Q Consensus 585 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~ 660 (754)
..+.. ++..+.+.+..++..|.+.|.+++|+.+++.. +..+ ....|.-|...+.+. ++..++.+.|..-.
T Consensus 1270 ~~cgl------~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1270 QMCGL------HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHH------hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 66543 23345667778899999999999999999755 4444 455666666666554 67778888888888
Q ss_pred ccCC-----CCcchHHHHHHHHHhcCCchHHHH
Q 004425 661 DLEP-----KDAGSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 661 ~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 688 (754)
.+.| +++..|..++.+|.+.|+|+.|..
T Consensus 1344 ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1344 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7777 677889999999999999998884
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-18 Score=173.95 Aligned_cols=322 Identities=13% Similarity=0.049 Sum_probs=213.6
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHh
Q 004425 362 SCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFM 438 (754)
Q Consensus 362 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 438 (754)
..+..+...+...|+++.|...++.+++.. +.+...+..+...|...|++++|...|+++. +.+...|..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344555556666677777777776666643 2344555666666666666666666665543 234445555555555
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCC---CH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 004425 439 EKIADDEEDVMVLFSQQRLAGMEP---DP-VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGS 514 (754)
Q Consensus 439 ~~~~~~~~~A~~~~~~m~~~g~~p---~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 514 (754)
. .|++++|+..|++..+. .| +. ..+..+... .. ...+..+...+...|+
T Consensus 83 ~--~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 83 K--QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp H--HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTC
T ss_pred H--cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccC
Confidence 5 66666666666665543 33 22 111111100 00 0012223567778888
Q ss_pred HHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004425 515 IDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNE 590 (754)
Q Consensus 515 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 590 (754)
+++|...|+.+.+ .+...|..+...+...|++++|+..++++.+ ..| +..++..+...+...|++++|...|++
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888877642 4566777788888888888888888888887 344 445777788888888888888888888
Q ss_pred HHHHhCCCCC-ccHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCC-CH----HHHHHHHHHHHhcCChHH
Q 004425 591 IEQIYGLRPI-LEHFA------------CMVDLLGRAGRLSEAMNLINSS-PFSE-SP----LLWRTLVSVSKLMANSKF 651 (754)
Q Consensus 591 ~~~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~----~~~~~l~~~~~~~g~~~~ 651 (754)
+.+. .|+ ...+. .++..+.+.|++++|.+.++++ ...| ++ ..+..+...+...|++++
T Consensus 214 a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 214 CLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 8662 233 22222 3367788899999999998865 2233 33 235567788889999999
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHH
Q 004425 652 SILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYS 731 (754)
Q Consensus 652 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (754)
|...++++++.+|+++..+..++.+|...|++++|...+++..+. .|....+..
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------------------------~p~~~~~~~ 344 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------------------------NENDQQIRE 344 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCCChHHHH
Confidence 999999999999999999999999999999999999999987652 344455666
Q ss_pred HHHHHHHHHHH
Q 004425 732 KLDLLNDEMKL 742 (754)
Q Consensus 732 ~l~~l~~~~~~ 742 (754)
.|..+...+++
T Consensus 345 ~l~~~~~~~~~ 355 (359)
T 3ieg_A 345 GLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-15 Score=164.11 Aligned_cols=499 Identities=12% Similarity=0.082 Sum_probs=341.1
Q ss_pred HHHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCC-hhHHHH---HhccC------CCCChh----h
Q 004425 61 WPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNR-LDVAQK---LFDGM------LVRSAI----T 126 (754)
Q Consensus 61 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~-~~~A~~---~~~~~------~~~~~~----~ 126 (754)
...|+..+-+.+++..-+..++..+..| ..++.++|+|...|...++ ++.-+. .++.. .++|+. +
T Consensus 842 ~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~ia 920 (1630)
T 1xi4_A 842 TDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVA 920 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHH
Confidence 4456666666666766777777777777 4688899999999987653 332111 00100 112221 1
Q ss_pred ------HHHHHHHHhcCCChhH-HHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCC--CCcHHHH
Q 004425 127 ------WTSLIKGYLDDGDYES-VLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGF--ENNVFVG 197 (754)
Q Consensus 127 ------~~~li~~~~~~~~~~~-a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~ 197 (754)
-.-||+..-+++.+.. |.-+.++. |...|..++.- +-+.=+++.++.....+ ..++.--
T Consensus 921 y~~g~~d~eli~vt~~n~l~k~~arylv~r~-------d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeV 988 (1630)
T 1xi4_A 921 YERGQCDLELINVCNENSLFKSLSRYLVRRK-------DPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEV 988 (1630)
T ss_pred hcccCCcHHHHHHHhcchhHHHHHHHHHHhc-------CHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHh
Confidence 1235555555555543 23333322 55666666632 22333455555555443 2344455
Q ss_pred HHHHHHhHhcCCHhHHHHHhccCCCC------CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHh
Q 004425 198 TSLISMYFHSGCFREAENVFRGLAYK------DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCY 271 (754)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 271 (754)
...+..|...|.+.+|++++++..-. +....|.++....+. +..+..++..++... ...-+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHH
Confidence 67788888999999999999887632 235667777777777 556666666665421 2334667788
Q ss_pred ccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHH
Q 004425 272 ENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLE 351 (754)
Q Consensus 272 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 351 (754)
..|.+++|.++|+... -.....+.+ +-..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+
T Consensus 1061 ~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred hCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 8999999999998852 111122223 237788999999998774 467888999999999999999999966
Q ss_pred hHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHH
Q 004425 352 FLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFN 431 (754)
Q Consensus 352 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 431 (754)
. -|...|..++.+|.+.|+++++.+.+...++.. ++..+.+.++.+|++.+++++...+. ..++...|.
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~ 1199 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQ 1199 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHH
Confidence 3 467788889999999999999999999888755 33334445888999999988655553 345666777
Q ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 004425 432 AILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAK 511 (754)
Q Consensus 432 ~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 511 (754)
.+...|.. .|++++|..+|... ..|..+...+.+.|+++.|.+.++++ .+..+|..+..+|..
T Consensus 1200 ~iGd~le~--eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1200 QVGDRCYD--EKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHh--cCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 77778888 89999999999874 37888889999999999998888877 456788888888888
Q ss_pred cCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH--hcCCHHHHHHHH
Q 004425 512 CGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACI--YSGLSEGGICLF 588 (754)
Q Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~--~~g~~~~a~~~~ 588 (754)
.|++..|...... ...+...+..++..|.+.|.+++|+.+++..+. +.|... .|.-+..+++ +-+++.++.++|
T Consensus 1263 ~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred hhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8999998887765 334555667888889999999999999988775 445443 4444444444 445555555555
Q ss_pred HHHHHHhCCCC------CccHHHHHHHHHhhcCCHHHHHHHH
Q 004425 589 NEIEQIYGLRP------ILEHFACMVDLLGRAGRLSEAMNLI 624 (754)
Q Consensus 589 ~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~ 624 (754)
..- ..++| +...|.-++.+|.+.|+++.|...+
T Consensus 1340 ~~r---ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1340 WSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHh---cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 433 34444 3456888899999999999888443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-17 Score=172.18 Aligned_cols=323 Identities=9% Similarity=-0.015 Sum_probs=247.4
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 004425 325 NLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVD 404 (754)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 404 (754)
|+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45677888899999999999999999998853 2356788888889999999999999999999875 345688899999
Q ss_pred HHHhCCCHHHHHHHHhcCCCCCh------hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 004425 405 IYAKGGDLKSARMLLDGFSCKYT------AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQA 478 (754)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 478 (754)
.|...|++++|...|++....+. ..+..+...+. ...+..+...+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHcc
Confidence 99999999999999998764332 22332211100 011233444556667
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004425 479 CLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEE 555 (754)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 555 (754)
+++.|...++.+.+.. +.+...+..+...|...|++++|...++.+.+ .+..+|..+...|...|++++|+..|++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777777766654 34566777788888888888888888887643 4567788888888888999999999988
Q ss_pred HHHcCCCCCHH-HHH------------HHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHhhcCCH
Q 004425 556 MKREGFAPDDI-SIL------------GVLQACIYSGLSEGGICLFNEIEQIYGLRPIL-----EHFACMVDLLGRAGRL 617 (754)
Q Consensus 556 m~~~g~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~ 617 (754)
..+ ..|+.. .+. .+...+...|++++|...++++.+. .|+. ..+..++.++...|++
T Consensus 214 a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 214 CLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCH
Confidence 887 445443 222 2356688899999999999998773 2332 2355688899999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 618 SEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 618 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
++|.+.+++. ...| ++..|..+...+...|++++|...++++++++|++...+..+..++...
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999866 2234 7889999999999999999999999999999999999988888776654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-17 Score=169.16 Aligned_cols=286 Identities=12% Similarity=0.024 Sum_probs=223.7
Q ss_pred CcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004425 393 LSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSR 469 (754)
Q Consensus 393 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 469 (754)
+.+..++..+...+...|++++|.++|+++. +.+...+..++..+.. .|++++|..+++++.+.. +.+...+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE--LNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHH--HTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH--hhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 4455566666667777777777777777654 3344556666677777 888888888888888752 234467777
Q ss_pred HHHHHhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCC
Q 004425 470 LLSLSASQA-CLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGL 545 (754)
Q Consensus 470 ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 545 (754)
+...+...| +++.|...++.+.+.. +.+...+..+...|...|++++|...|+++.+ .+...|..+...|...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 788888888 8888888888888764 44567788889999999999999999988753 345677888899999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC-------CCCCccHHHHHHHHHhhcCCH
Q 004425 546 GKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYG-------LRPILEHFACMVDLLGRAGRL 617 (754)
Q Consensus 546 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~ 617 (754)
+++|+..+++..+ ..|+ ...+..+...+...|++++|..+++++.+... .+.....+..++.+|.+.|++
T Consensus 175 ~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999988 4454 46888888899999999999999999877321 133456888999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH-HhcCCch
Q 004425 618 SEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY-AGQGMLD 684 (754)
Q Consensus 618 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 684 (754)
++|.+.+++. ...| +...|..+...+...|+.++|...++++++++|+++..+..++.++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999865 2223 6788999999999999999999999999999999999999999988 4555543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.7e-17 Score=163.51 Aligned_cols=264 Identities=10% Similarity=-0.033 Sum_probs=226.7
Q ss_pred CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHH
Q 004425 424 CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGN 503 (754)
Q Consensus 424 ~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 503 (754)
..+...+..+...+.. .|++++|+++|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+.
T Consensus 19 ~~~~~~~~~~a~~~~~--~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 19 QENLDVVVSLAERHYY--NCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp -CCCTTHHHHHHHHHH--TTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 3455677778888888 999999999999998863 3334566678888899999999999999999865 45678889
Q ss_pred HHHHHHHhcC-CHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 004425 504 ALITMYAKCG-SIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYS 578 (754)
Q Consensus 504 ~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 578 (754)
.+...|...| ++++|...|++..+ .+...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHH
Confidence 9999999999 99999999998754 35678999999999999999999999999984 454 46777789999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcC
Q 004425 579 GLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSP-----------FSESPLLWRTLVSVSKLMA 647 (754)
Q Consensus 579 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~l~~~~~~~g 647 (754)
|++++|..+++++.+ ..+.+...+..++.+|.+.|++++|.+.++++- .+.+..+|..+...+...|
T Consensus 173 ~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 173 NNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 999999999999966 233446788999999999999999999997651 1335779999999999999
Q ss_pred ChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 648 NSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 648 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++++|...++++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999986543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-15 Score=162.86 Aligned_cols=210 Identities=8% Similarity=-0.004 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHhccCC---C-ChhHHHHHHHHHHH
Q 004425 481 VRGRSLHAYSIKTGYAADVIVGNALITMYAK-------CGSID-------GAFQIFKGISD---R-DIVSWNAMLSAYAL 542 (754)
Q Consensus 481 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~ 542 (754)
+.+..++++++... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36667788877753 4567788888887775 68876 89999998763 3 46789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHH-HhhcCCHH
Q 004425 543 HGLGKGALLLFEEMKREGFAPDD--ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDL-LGRAGRLS 618 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~ 618 (754)
.|++++|..+|+++++ +.|+. ..|...+..+.+.|++++|.++|++..+ ..|. ...|...+.. +...|+.+
T Consensus 334 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChh
Confidence 9999999999999998 56754 4788888888889999999999999865 3343 2333332222 33689999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc----hHHHHHHHHHhcCCchHHHHHHHH
Q 004425 619 EAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG----SFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 619 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
+|.++|++. ...| ++..|..++......|+.++|..+++++++..|.++. .|...+......|+.+++..+.++
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999865 2234 6889999999999999999999999999998877665 777778888889999999999988
Q ss_pred HhhC
Q 004425 693 MNDL 696 (754)
Q Consensus 693 m~~~ 696 (754)
+.+.
T Consensus 489 ~~~~ 492 (530)
T 2ooe_A 489 RFTA 492 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-17 Score=165.96 Aligned_cols=285 Identities=13% Similarity=0.097 Sum_probs=136.4
Q ss_pred hcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHH
Q 004425 307 KHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGF 386 (754)
Q Consensus 307 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 386 (754)
+.|++++|.++++++..|+ +|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999996654 899999999999999999999965 36888999999999999999999998887
Q ss_pred HHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004425 387 AIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVT 466 (754)
Q Consensus 387 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 466 (754)
.++. .+++.+.+.|+.+|.++|+++++.++++. ++..+|+.+...|.. .|.+++|..+|..+ ..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~--~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYD--EKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C------------------CTTTHHHHHHHT---------TC
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHH--cCCHHHHHHHHHHh---------hh
Confidence 7774 45578899999999999999999988864 667799999999999 99999999999977 47
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCCh
Q 004425 467 FSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLG 546 (754)
Q Consensus 467 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 546 (754)
|..+..++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 889999999999999999999988 378899999999999999999988777655 4444455788999999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh--cCCHHHHHHHHHHHHHHhCCCC------CccHHHHHHHHHhhcCCH
Q 004425 547 KGALLLFEEMKREGFAPDD-ISILGVLQACIY--SGLSEGGICLFNEIEQIYGLRP------ILEHFACMVDLLGRAGRL 617 (754)
Q Consensus 547 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~ 617 (754)
++|+.+++..+. ..+.. ..|+.+.-++++ -+++.+.++.|. ....++| +...|.-++.+|...+++
T Consensus 224 eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 224 EELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 999999999876 44443 355555555554 444555555443 3245555 467899999999999999
Q ss_pred HHHHHHHHhC
Q 004425 618 SEAMNLINSS 627 (754)
Q Consensus 618 ~~A~~~~~~~ 627 (754)
+.|...+-+-
T Consensus 299 d~A~~tm~~h 308 (449)
T 1b89_A 299 DNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 9998776554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-17 Score=169.57 Aligned_cols=279 Identities=11% Similarity=-0.031 Sum_probs=219.3
Q ss_pred HHhCCCHHHHHH-HHhcCC---CC----ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 004425 406 YAKGGDLKSARM-LLDGFS---CK----YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQ 477 (754)
Q Consensus 406 ~~~~g~~~~A~~-~~~~~~---~~----~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 477 (754)
+.-.|++++|.. .|++.. +. +...|..+...+.. .|++++|+..|+++.+.. +.+..++..+...+...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ--EGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH--TTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334577778877 776543 21 24467778888888 899999999999998763 34556788888888999
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhHHHH---------------HHHH
Q 004425 478 ACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--R-DIVSWNA---------------MLSA 539 (754)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~ 539 (754)
|+++.|...++.+.+.. +.+..++..+...|...|++++|...|+++.+ | +...+.. .+..
T Consensus 112 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 112 EQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999999998875 45778888899999999999999999987743 2 2222221 2333
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCC
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPD---DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGR 616 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 616 (754)
+...|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+|+++... .+.+...+..++.+|.+.|+
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCC
Confidence 44889999999999999984 455 678899999999999999999999999773 33446789999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC-----------cchHHHHHHHHHhcCCc
Q 004425 617 LSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD-----------AGSFILVSNMYAGQGML 683 (754)
Q Consensus 617 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~ 683 (754)
+++|++.++++ ...| +...|..+..++...|++++|...+++++++.|++ ...|..++.+|...|++
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 99999999876 3334 68899999999999999999999999999999987 78999999999999999
Q ss_pred hHHHHHHHH
Q 004425 684 DEAAKVRTT 692 (754)
Q Consensus 684 ~~a~~~~~~ 692 (754)
++|..++++
T Consensus 347 ~~A~~~~~~ 355 (368)
T 1fch_A 347 DAYGAADAR 355 (368)
T ss_dssp GGHHHHHTT
T ss_pred HhHHHhHHH
Confidence 999998863
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-15 Score=160.33 Aligned_cols=354 Identities=10% Similarity=-0.011 Sum_probs=235.5
Q ss_pred cCChHHHHHHHHccCC-CCchhHHHHHHHHHh----cCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcc----cCChH
Q 004425 308 HGMSEEAERMFDAISE-RNLISWTALISGYVR----SGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSV----CSNLE 378 (754)
Q Consensus 308 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~ 378 (754)
.+++++|...|++..+ .+...+..+...|.. .++.++|+..|++..+.| +...+..+-..+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 4444444444443322 233344444444444 445555555555544433 22333333333333 44555
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHh----CCCHHHHHHHHhcCC-CCChhhHHHHHHHHhhh--hcCCHHHHHHH
Q 004425 379 LGLQLHGFAIKHGYLSDVRLGTALVDIYAK----GGDLKSARMLLDGFS-CKYTAEFNAILSGFMEK--IADDEEDVMVL 451 (754)
Q Consensus 379 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~--~~~~~~~A~~~ 451 (754)
+|...++...+.| +...+..|..+|.. .++.++|.+.|++.. ..+...+..+...|... ..++.++|+..
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 5555555555443 23344444445544 455555555555443 22334444444444331 05778888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhc----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHh
Q 004425 452 FSQQRLAGMEPDPVTFSRLLSLSAS----QACLVRGRSLHAYSIKTGYAADVIVGNALITMYAK----CGSIDGAFQIFK 523 (754)
Q Consensus 452 ~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 523 (754)
|++..+.| +...+..+...+.. .++.++|..+++...+.| +...+..+..+|.. .++.++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 88877754 44556666666654 778889999988888765 45566777777877 889999999998
Q ss_pred ccCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHH
Q 004425 524 GISD-RDIVSWNAMLSAYALH-----GLGKGALLLFEEMKREGFAPDDISILGVLQACIYSG---LSEGGICLFNEIEQI 594 (754)
Q Consensus 524 ~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~ 594 (754)
...+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...+...| ++++|.++|++..+
T Consensus 284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~- 359 (490)
T 2xm6_A 284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA- 359 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-
Confidence 8754 4667788888888887 89999999999998865 4456677777777756 78899999999987
Q ss_pred hCCCCCccHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhccCCC-
Q 004425 595 YGLRPILEHFACMVDLLGR----AGRLSEAMNLINSSPFSESPLLWRTLVSVSKL----MANSKFSILASKRLLDLEPK- 665 (754)
Q Consensus 595 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~- 665 (754)
. .+...+..+..+|.. .+++++|.+++++.....++..+..|...+.. .+|.++|...++++.+.+|+
T Consensus 360 ~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 436 (490)
T 2xm6_A 360 K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNL 436 (490)
T ss_dssp T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCH
T ss_pred C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 2 356778888999988 89999999999876444578888899998887 89999999999999999854
Q ss_pred --CcchHHHHHHHHHhc
Q 004425 666 --DAGSFILVSNMYAGQ 680 (754)
Q Consensus 666 --~~~~~~~l~~~~~~~ 680 (754)
++.+...++.++...
T Consensus 437 ~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 437 FGTENRNITEKKLTAKQ 453 (490)
T ss_dssp HHHHHHHHHHTTSCHHH
T ss_pred cCCHHHHHHHHhcCHhH
Confidence 777777777776643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-16 Score=161.77 Aligned_cols=221 Identities=12% Similarity=0.055 Sum_probs=75.4
Q ss_pred hcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHH
Q 004425 206 HSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGL 285 (754)
Q Consensus 206 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 285 (754)
+.|++++|.++++++..++ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5677888888888886554 8888889999999999999888652 5777888888888888899888887776
Q ss_pred HHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHH
Q 004425 286 AVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLA 365 (754)
Q Consensus 286 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 365 (754)
..+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 6663 45577788888889999998888877753 67778888888888888888888888866 3677
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCH
Q 004425 366 TVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDE 445 (754)
Q Consensus 366 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 445 (754)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+ .|.+
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek--~G~~ 223 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQD--RGYF 223 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHH--TTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHH--CCCH
Confidence 7777777777777777777766 256667777777777777777766555543 333333446666666 6677
Q ss_pred HHHHHHHHHHHH
Q 004425 446 EDVMVLFSQQRL 457 (754)
Q Consensus 446 ~~A~~~~~~m~~ 457 (754)
++|+.+++....
T Consensus 224 eEai~lLe~aL~ 235 (449)
T 1b89_A 224 EELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 777666666653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-16 Score=152.58 Aligned_cols=249 Identities=10% Similarity=-0.004 Sum_probs=157.5
Q ss_pred hCCCHHHHHHHHhcCCCCChh----hHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHH
Q 004425 408 KGGDLKSARMLLDGFSCKYTA----EFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRG 483 (754)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 483 (754)
..|++..|...++.....+.. ....+..+|.. .|++++|+..++.. -.|+..++..+...+...++.+.|
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~--~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLA--QRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH--TTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHH--CCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 355666666665554433221 22334556666 66776666655431 245556666777777777777777
Q ss_pred HHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004425 484 RSLHAYSIKTGYAA-DVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFA 562 (754)
Q Consensus 484 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 562 (754)
.+.++.+...+..| +...+..+...|...|++++|.+.+++ ..+...+..++..|.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 77777777665433 556667777889999999999999998 456778888999999999999999999999884 4
Q ss_pred CCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 004425 563 PDDISI---LGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWR 637 (754)
Q Consensus 563 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 637 (754)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|++.+++. ...| ++.+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 665321 11223334457788888888888763 3334455555555555666666655555543 2223 455555
Q ss_pred HHHHHHHhcCChHH-HHHHHHHhhccCCCCcc
Q 004425 638 TLVSVSKLMANSKF-SILASKRLLDLEPKDAG 668 (754)
Q Consensus 638 ~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~ 668 (754)
.++..+...|+.++ +.+.++++++++|+++.
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 55555555555543 34555555555555543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-17 Score=167.27 Aligned_cols=261 Identities=11% Similarity=-0.038 Sum_probs=214.6
Q ss_pred ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHH
Q 004425 426 YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNAL 505 (754)
Q Consensus 426 ~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 505 (754)
+...|..+...+.. .|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~--~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLK--EGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHH--HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHH--CCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 44568888888999 999999999999998863 3456788899999999999999999999999875 4567889999
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 004425 506 ITMYAKCGSIDGAFQIFKGISDRD-------------IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGV 571 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 571 (754)
...|...|++++|...|+++.+.+ ...+..+...+...|++++|+.+|+++.+..... +..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999999885421 1233455888999999999999999999853221 46789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 004425 572 LQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANS 649 (754)
Q Consensus 572 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 649 (754)
...+...|++++|..+|+++.+. .+.+...+..++.+|.+.|++++|++.++++ ...| +..+|..+..++...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999873 3445778999999999999999999999876 3344 588999999999999999
Q ss_pred HHHHHHHHHhhccCCC------------CcchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 650 KFSILASKRLLDLEPK------------DAGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 650 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
++|...+++++++.|+ +...|..++.++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999887 367899999999999999999988764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-14 Score=152.95 Aligned_cols=354 Identities=10% Similarity=-0.014 Sum_probs=292.4
Q ss_pred CCchhHHHHHHHHHh----cCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcc----cCChHHHHHHHHHHHHhCCCcc
Q 004425 324 RNLISWTALISGYVR----SGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSV----CSNLELGLQLHGFAIKHGYLSD 395 (754)
Q Consensus 324 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 395 (754)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...|+...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 455666666677777 899999999999998874 45666677777777 899999999999999876 5
Q ss_pred hhHHHHHHHHHHh----CCCHHHHHHHHhcCC-CCChhhHHHHHHHHhhhh--cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004425 396 VRLGTALVDIYAK----GGDLKSARMLLDGFS-CKYTAEFNAILSGFMEKI--ADDEEDVMVLFSQQRLAGMEPDPVTFS 468 (754)
Q Consensus 396 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~--~~~~~~A~~~~~~m~~~g~~p~~~~~~ 468 (754)
...+..|..+|.. .+++++|...|++.. ..+...+..+...|.... .++.++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667778888888 889999999999876 345566777777666421 578999999999998874 566777
Q ss_pred HHHHHHhc----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCC-CChhHHHHHHHH
Q 004425 469 RLLSLSAS----QACLVRGRSLHAYSIKTGYAADVIVGNALITMYAK----CGSIDGAFQIFKGISD-RDIVSWNAMLSA 539 (754)
Q Consensus 469 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 539 (754)
.+...+.. .++.++|...+.+..+.| +...+..+..+|.. .+++++|..+|++..+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777 899999999999999876 56778888888886 8999999999998754 566778888888
Q ss_pred HHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004425 540 YAL----HGLGKGALLLFEEMKREGFAPDDISILGVLQACIYS-----GLSEGGICLFNEIEQIYGLRPILEHFACMVDL 610 (754)
Q Consensus 540 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 610 (754)
|.. .++.++|+..|++..+.| +...+..+...+... +++++|..+|++..+ .+ +...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QG---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC---CHHHHHHHHHH
Confidence 888 899999999999998764 455777777888877 899999999999987 33 45677888888
Q ss_pred HhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh----
Q 004425 611 LGRAG---RLSEAMNLINSSPFSESPLLWRTLVSVSKL----MANSKFSILASKRLLDLEPKDAGSFILVSNMYAG---- 679 (754)
Q Consensus 611 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 679 (754)
|.+.| +.++|++++++.....++..+..|...+.. .++.++|...++++.+.. ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88767 889999999877444688999999999988 899999999999999864 57899999999999
Q ss_pred cCCchHHHHHHHHHhhCCC
Q 004425 680 QGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 680 ~g~~~~a~~~~~~m~~~~~ 698 (754)
.+++++|...+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999987663
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-14 Score=154.62 Aligned_cols=423 Identities=11% Similarity=0.040 Sum_probs=266.2
Q ss_pred CCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC---CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHH
Q 004425 191 ENNVFVGTSLISMYFHSGCFREAENVFRGLAYK---DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVI 267 (754)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 267 (754)
+-+...|..++. +.+.|++++|..+|+++... +...|...+..+.+.|++++|..+|++..... |+...|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 335667777777 46678888888888776543 45567778888888888888888888877653 5655555555
Q ss_pred HHH-hccCCchHHHH----HHHHHHHh-cCCC-ChhHHHHHHHHHHh---------cCChHHHHHHHHccCC-CCchhHH
Q 004425 268 SVC-YENLGVEEGKQ----LHGLAVKF-GVVR-EISVGNAIVTMYGK---------HGMSEEAERMFDAISE-RNLISWT 330 (754)
Q Consensus 268 ~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~-~~~~~~~ 330 (754)
... ...|+.+.|.+ +|+..++. |..| +..+|...+....+ .|+++.|..+|++..+ |+. ...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~-~~~ 165 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI-NIE 165 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT-THH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh-hHH
Confidence 432 24566666554 55555442 4443 45566666665544 4666666666666554 211 001
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCC
Q 004425 331 ALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGG 410 (754)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 410 (754)
.+-..|.. ++... +..+...++. ...+++..|..++..+..
T Consensus 166 ~~~~~~~~---~e~~~-------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~--------------------- 206 (530)
T 2ooe_A 166 QLWRDYNK---YEEGI-------------NIHLAKKMIE--DRSRDYMNARRVAKEYET--------------------- 206 (530)
T ss_dssp HHHHHHHH---HHHHH-------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHH---HHHhh-------------chhHHHHHHH--HhhHHHHHHHHHHHHHHH---------------------
Confidence 11111110 00000 0000011110 012233344443333211
Q ss_pred CHHHHHHHHhcCC---CCC--------hhhHHHHHHHHhhhh--cCC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004425 411 DLKSARMLLDGFS---CKY--------TAEFNAILSGFMEKI--ADD----EEDVMVLFSQQRLAGMEPDPVTFSRLLSL 473 (754)
Q Consensus 411 ~~~~A~~~~~~~~---~~~--------~~~~~~li~~~~~~~--~~~----~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 473 (754)
....++... .++ ...|...+.-..... .++ .+++..+|++..... +-+...|..+...
T Consensus 207 ----~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~ 281 (530)
T 2ooe_A 207 ----VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQY 281 (530)
T ss_dssp ----HHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred ----HHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 001111100 010 123333332211100 122 246777888887752 3345667666666
Q ss_pred Hhc-------ccchH-------HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-h-hHHHH
Q 004425 474 SAS-------QACLV-------RGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--RD-I-VSWNA 535 (754)
Q Consensus 474 ~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~-~~~~~ 535 (754)
+.+ .|+++ .|..+++++.+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|..
T Consensus 282 ~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 361 (530)
T 2ooe_A 282 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ 361 (530)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHH
T ss_pred HHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHH
Confidence 654 68877 8899999988733355688899999999999999999999998753 43 3 48999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHH-HHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh
Q 004425 536 MLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQA-CIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR 613 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 613 (754)
++..+.+.|+.++|..+|++..+. .|+. ..|...... +...|++++|..+|++..+.. +.+...+..+++.+.+
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~ 437 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSH 437 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHh
Confidence 999999999999999999999984 4442 333332222 346899999999999998742 3356789999999999
Q ss_pred cCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 614 AGRLSEAMNLINSS----PFSES--PLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 614 ~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 438 ~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 438 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 99999999999875 33332 558999999999999999999999999999985
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-15 Score=158.68 Aligned_cols=367 Identities=10% Similarity=-0.043 Sum_probs=232.0
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHhHhc-----C--ccc-ChhhHHHHHHHhcccCChHHHHHHHHHHHHhC--C--
Q 004425 325 NLISWTALISGYVRSGHGGKAINGFLEFLDL-----G--ICC-DSSCLATVIDGCSVCSNLELGLQLHGFAIKHG--Y-- 392 (754)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~-- 392 (754)
....||.+...+...|++++|++.|++.++. + ..| ...+|+.+...|...|++++|...++++.+.. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567999999999999999999999987652 1 122 24578888889999999999999998877621 0
Q ss_pred --C-cchhHHHHHHHHHHh--CCCHHHHHHHHhcCC---CCChhhHHHHHHHHhh-hhcCCHHHHHHHHHHHHHcCCCCC
Q 004425 393 --L-SDVRLGTALVDIYAK--GGDLKSARMLLDGFS---CKYTAEFNAILSGFME-KIADDEEDVMVLFSQQRLAGMEPD 463 (754)
Q Consensus 393 --~-~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-~~~~~~~~A~~~~~~m~~~g~~p~ 463 (754)
. ....++..+..++.+ .+++++|...|++.. +.+...+..+...+.. ...++.++|++.+++..+. .|+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCc
Confidence 1 123455555444444 456888988888765 3445555555444322 1157778888888887765 344
Q ss_pred -HHHHHHHHHHHh----cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhHHHH
Q 004425 464 -PVTFSRLLSLSA----SQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--R-DIVSWNA 535 (754)
Q Consensus 464 -~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 535 (754)
...+..+...+. ..++.++|.+.++++.+.. +.+..++..+...|.+.|++++|...|++..+ | +..+|..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 344444444443 3456778888888887765 45667778888888999999999988887753 3 4556777
Q ss_pred HHHHHHHc-------------------CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004425 536 MLSAYALH-------------------GLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIY 595 (754)
Q Consensus 536 li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 595 (754)
+..+|... +..++|+..+++..+ ..|+. .++..+...+...|++++|..+|++..+ .
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-~ 363 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFS-K 363 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh-c
Confidence 77776432 235667777777776 44544 4677788888888888888888888866 2
Q ss_pred CCCCCc--cHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHH
Q 004425 596 GLRPIL--EHFACMVDL-LGRAGRLSEAMNLINSS-PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFI 671 (754)
Q Consensus 596 ~~~p~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 671 (754)
...+.. ..+..+... +...|+.++|++.+++. ...|+...+.. ....+..++++.++.+|+++.+|.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHH
Confidence 322221 123333333 34678888888888754 44555433322 233456677888888999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeE
Q 004425 672 LVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSW 706 (754)
Q Consensus 672 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 706 (754)
.||.+|...|++++|.+.+++..+.+.......+|
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999987766554444444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-15 Score=157.81 Aligned_cols=283 Identities=11% Similarity=-0.008 Sum_probs=129.7
Q ss_pred hcCChHHHHH-HHHccCC-----C--CchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChH
Q 004425 307 KHGMSEEAER-MFDAISE-----R--NLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLE 378 (754)
Q Consensus 307 ~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 378 (754)
-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3455566655 5554332 1 23445555555666666666666666555432 112333344444444444444
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHc
Q 004425 379 LGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLA 458 (754)
Q Consensus 379 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~ 458 (754)
.|...++.+.+.. +.+...|..+...|.. .|++++|+..|+++...
T Consensus 116 ~A~~~~~~al~~~--------------------------------~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 116 LAISALRRCLELK--------------------------------PDNQTALMALAVSFTN--ESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC--------------------------------CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh
Confidence 4444444444332 2344455555555555 66666777777666654
Q ss_pred CCCCCHH-HHHH---------------HHHHHhcccchHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHH
Q 004425 459 GMEPDPV-TFSR---------------LLSLSASQACLVRGRSLHAYSIKTGYAA-DVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 459 g~~p~~~-~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
. |+.. .+.. .+..+...|++++|...++.+.+..-.. +..
T Consensus 162 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~--------------------- 218 (368)
T 1fch_A 162 T--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD--------------------- 218 (368)
T ss_dssp S--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH---------------------
T ss_pred C--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHH---------------------
Confidence 2 3221 1110 1122224455555555555554432110 234
Q ss_pred HhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC
Q 004425 522 FKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI 600 (754)
Q Consensus 522 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 600 (754)
+|..+...|...|++++|+..|+++++. .|+ ..++..+...+...|++++|..+|+++.+. .+.+
T Consensus 219 ----------~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~ 284 (368)
T 1fch_A 219 ----------VQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGY 284 (368)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred ----------HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 4444444444455555555555544442 232 234444444555555555555555554431 1122
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC----CC---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS----PF---------SESPLLWRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~---------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
...+..++.+|.+.|++++|.+.++++ +. .....+|..+..++...|+.++|..++++.++
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 334445555555555555555554433 10 01256666676777777777776666655443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-15 Score=155.55 Aligned_cols=256 Identities=9% Similarity=-0.055 Sum_probs=191.8
Q ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 004425 430 FNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMY 509 (754)
Q Consensus 430 ~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 509 (754)
|..+...+.. .|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|
T Consensus 24 ~~~~a~~~~~--~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 24 PMEEGLSMLK--LANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 4444455555 666666666666666542 2244556666666667777777777777766653 33556666777777
Q ss_pred HhcCCHHHHHHHHhccCC--C-ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHH
Q 004425 510 AKCGSIDGAFQIFKGISD--R-DIVSWNAM--------------LS-AYALHGLGKGALLLFEEMKREGFAP-DDISILG 570 (754)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ 570 (754)
...|++++|...|+++.+ | +...+..+ .. .+...|++++|+..++++.+. .| +...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHH
Confidence 777777777777776532 1 22222222 22 367788999999999999984 34 5568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMAN 648 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 648 (754)
+...+...|++++|..+++++.+. .+.+...+..++.+|.+.|++++|.+.++++ ...| +...|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999773 3345678889999999999999999999875 2334 68899999999999999
Q ss_pred hHHHHHHHHHhhccCCC------------CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 649 SKFSILASKRLLDLEPK------------DAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 649 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
+++|...+++++++.|+ ++..+..++.+|...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999 7889999999999999999999998744
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.2e-16 Score=160.09 Aligned_cols=230 Identities=15% Similarity=0.027 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHH
Q 004425 464 PVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAY 540 (754)
Q Consensus 464 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 540 (754)
...+..+...+.+.|++++|..+++.+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3458888889999999999999999999875 55788999999999999999999999998853 4578999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPDDI-----------SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
...|++++|+..|+++.+ +.|+.. .+..+...+...|++++|..+|+++.+...-.++...+..++.
T Consensus 144 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998 445432 2234577889999999999999999884222225778999999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHH
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
+|.+.|++++|++.++++ ...| +..+|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999876 2334 68999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 004425 688 KVRTTMNDL 696 (754)
Q Consensus 688 ~~~~~m~~~ 696 (754)
..++++.+.
T Consensus 302 ~~~~~al~~ 310 (365)
T 4eqf_A 302 SNFLTALSL 310 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998663
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-17 Score=180.59 Aligned_cols=150 Identities=10% Similarity=0.091 Sum_probs=130.1
Q ss_pred CCChhhhHHHHHHHHccCChhHHHHHhccC-------CCCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhH
Q 004425 90 QNDTFEANNLINLYAKFNRLDVAQKLFDGM-------LVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTC 162 (754)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 162 (754)
..-..+||+||++||+.|++++|..+|++| ..||++|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 334568999999999999999999999775 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCh-HHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC-----CcchHHHHHHHHH
Q 004425 163 SVILEACSLLEDR-IFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYK-----DVRCVNFMILEYN 236 (754)
Q Consensus 163 ~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~ 236 (754)
+++|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.+++..+..+ .+.+.+.|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999999988887777777776665532 2345555666666
Q ss_pred HcC
Q 004425 237 KAG 239 (754)
Q Consensus 237 ~~g 239 (754)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-17 Score=181.08 Aligned_cols=131 Identities=5% Similarity=0.024 Sum_probs=114.4
Q ss_pred CCcHHHHHHHHHHhHhcCCHhHHHHHhccCC-------CCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchH
Q 004425 191 ENNVFVGTSLISMYFHSGCFREAENVFRGLA-------YKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTF 263 (754)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 263 (754)
..-..+||+||++||++|++++|.++|++|. .||+++||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4456789999999999999999999997653 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCc-hHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHcc
Q 004425 264 TNVISVCYENLGV-EEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAI 321 (754)
Q Consensus 264 ~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 321 (754)
+++|.++|+.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999985 789999999999999999999999998887765555555554433
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-14 Score=152.58 Aligned_cols=387 Identities=12% Similarity=-0.009 Sum_probs=188.2
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHhHHC-----C--CCC-CcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChh
Q 004425 225 VRCVNFMILEYNKAGESEMAFHVFVHLLSS-----D--FEP-NDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREIS 296 (754)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 296 (754)
...||.+...+...|++++|++.|++-.+. + ..| ...+|+.+...+...|++++|...++...+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~------ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC------ 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------
Confidence 335666666666677777777766654321 0 111 12344445555555555555555544443211
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHccCC----CCchhHHHHHHHHHh--cCChhHHHHHHHHhHhcCcccChh-hHHHHHH
Q 004425 297 VGNAIVTMYGKHGMSEEAERMFDAISE----RNLISWTALISGYVR--SGHGGKAINGFLEFLDLGICCDSS-CLATVID 369 (754)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~ 369 (754)
..... ....+++.+..++.. .+++++|+..|++..+. .|+.. .+..+..
T Consensus 125 ----------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 125 ----------------------EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAI 180 (472)
T ss_dssp ----------------------HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred ----------------------HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 00000 011223333333332 23455666666555543 23322 2222211
Q ss_pred H---hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh----CCCHHHHHHHHhcCC---CCChhhHHHHHHHHhh
Q 004425 370 G---CSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAK----GGDLKSARMLLDGFS---CKYTAEFNAILSGFME 439 (754)
Q Consensus 370 ~---~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 439 (754)
. +...++.+.|.+.+++.++.. +.+..++..+...+.. .|+.++|.+.+++.. +.+...+..+...|..
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 1 233445555555555555543 2233333333333333 345566666665443 4455566677777777
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 004425 440 KIADDEEDVMVLFSQQRLAGMEPDP-VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGA 518 (754)
Q Consensus 440 ~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 518 (754)
.|++++|+..|++..+. .|+. .++..+...+...+....+. ............+..+.|
T Consensus 260 --~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~A 319 (472)
T 4g1t_A 260 --KDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNL----------------RENGMYGKRKLLELIGHA 319 (472)
T ss_dssp --TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHH
T ss_pred --cCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhH----------------HHHHHHHHHHHHhhHHHH
Confidence 88888888888887765 4443 34444433332211110000 000011111122345677
Q ss_pred HHHHhccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHH
Q 004425 519 FQIFKGIS---DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI--SILGVLQ-ACIYSGLSEGGICLFNEIE 592 (754)
Q Consensus 519 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~ 592 (754)
...|+... ..+..+|..+...|...|++++|+..|++.++....|... .+..+.. .....|++++|+..|++..
T Consensus 320 ~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777654 3455678889999999999999999999999854333221 2223322 3457899999999999986
Q ss_pred HHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchH
Q 004425 593 QIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-P-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSF 670 (754)
Q Consensus 593 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 670 (754)
+ +.|+....... ...+.+++++. . .+.++.+|..|+.++...|+.++|+..+++++++.|.+|.++
T Consensus 400 ~---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 400 K---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp H---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred h---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 5 55654332222 22333343322 2 233678999999999999999999999999999999988877
Q ss_pred HHHH
Q 004425 671 ILVS 674 (754)
Q Consensus 671 ~~l~ 674 (754)
.-+|
T Consensus 468 ~~~G 471 (472)
T 4g1t_A 468 SWNG 471 (472)
T ss_dssp ----
T ss_pred hcCC
Confidence 6665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-15 Score=139.95 Aligned_cols=193 Identities=15% Similarity=0.113 Sum_probs=155.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 004425 496 AADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGV 571 (754)
Q Consensus 496 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 571 (754)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++ +.|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 45677788888899999999999999998754 3567888999999999999999999999998 55755 578888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 004425 572 LQACIYS-----------GLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLGRAGRLSEAMNLINSS-PFSESPLLWRT 638 (754)
Q Consensus 572 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 638 (754)
..++... |++++|+..|++..+ +.| +...+..+..+|...|++++|++.+++. ....++..|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 999999999999977 244 4678889999999999999999999865 11178999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
+..++...|++++|+..++++++++|+++..+..++.+|...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-13 Score=135.55 Aligned_cols=251 Identities=8% Similarity=-0.027 Sum_probs=181.7
Q ss_pred HHHhcCChHHHHHHHHccCCCCc----hhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHH
Q 004425 304 MYGKHGMSEEAERMFDAISERNL----ISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLEL 379 (754)
Q Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 379 (754)
-....|++..|+..++.....+. .....+.++|...|+++.|+..++. .-.|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34556888888888877655332 3445567788888888888876644 134566677777788888888888
Q ss_pred HHHHHHHHHHhCCCc-chhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHc
Q 004425 380 GLQLHGFAIKHGYLS-DVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLA 458 (754)
Q Consensus 380 a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~ 458 (754)
|.+.++.+...+..| +...+..+...|...|++++|.+.+++ ..+...+..+...+.+ .|+.++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~--~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLK--LDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhh
Confidence 888888888776544 456667777889999999999999988 5677788888888988 99999999999999876
Q ss_pred CCCCCHHHH---HHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhH
Q 004425 459 GMEPDPVTF---SRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVS 532 (754)
Q Consensus 459 g~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 532 (754)
.|+.... ...+..+...|++++|..+++++.+. .+.+..+++.+..+|.+.|++++|...|++..+ .+..+
T Consensus 160 --~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 --DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp --CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4654311 12233344557888888888888876 355777777777788888888888887777642 35567
Q ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHHcCCCCCHHH
Q 004425 533 WNAMLSAYALHGLGKG-ALLLFEEMKREGFAPDDIS 567 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~t 567 (754)
|..++..+...|+.++ +.++++++.+ +.|+...
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~ 270 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF 270 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence 7777777777777765 4577777777 5566543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-14 Score=140.30 Aligned_cols=218 Identities=9% Similarity=-0.061 Sum_probs=164.8
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C----C----hhHHHH
Q 004425 466 TFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--R----D----IVSWNA 535 (754)
Q Consensus 466 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~ 535 (754)
.+..+...+...|++++|...++.+.+.. .+...+..+...|...|++++|...|+...+ | + ..+|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555666666666666666555 5556666666667777777777776666542 1 1 466777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC
Q 004425 536 MLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG 615 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 615 (754)
+...|...|++++|+..|++..+ +.|+. ..+...|++++|...++.+.. ..+.+...+..++..+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 88888888888888888888887 44553 345566778888888888866 22334567778888889999
Q ss_pred CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 616 RLSEAMNLINSS-PF-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 616 ~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
++++|.+.++++ .. +.++..|..+...+...|++++|...++++++.+|+++..|..++.+|...|++++|...+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999988865 22 3368889999999999999999999999999999999999999999999999999999999987
Q ss_pred hhC
Q 004425 694 NDL 696 (754)
Q Consensus 694 ~~~ 696 (754)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=9e-14 Score=141.19 Aligned_cols=228 Identities=11% Similarity=-0.017 Sum_probs=123.4
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 004425 326 LISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDI 405 (754)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 405 (754)
...|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|+++.|...++.+.+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 85 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------------- 85 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------
Confidence 3445556666666777777777776666542 1133344444445555555555555555554432
Q ss_pred HHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH--------------
Q 004425 406 YAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPV-TFSRL-------------- 470 (754)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l-------------- 470 (754)
+.+...|..+...+.. .|++++|+..+++..+. .|+.. .+..+
T Consensus 86 ------------------~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (327)
T 3cv0_A 86 ------------------PKDIAVHAALAVSHTN--EHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQS 143 (327)
T ss_dssp ------------------TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHT--STTTTTC------------------
T ss_pred ------------------cCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHH
Confidence 2233344444445555 66666666666666554 23222 11111
Q ss_pred HH-HHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCCh
Q 004425 471 LS-LSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLG 546 (754)
Q Consensus 471 l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 546 (754)
.. .+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...++++.+ .+..+|..+...|...|++
T Consensus 144 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 144 EDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 11 2556667777777777766654 23455566666666666666666666665532 2345566666666666666
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 547 KGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 547 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
++|+..|+++.+. .|+ ..++..+..++...|++++|...++++.+
T Consensus 223 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 223 QEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666666666552 232 34555555566666666666666665544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.6e-14 Score=137.07 Aligned_cols=240 Identities=10% Similarity=-0.098 Sum_probs=194.8
Q ss_pred cCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGME--P-DPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGA 518 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 518 (754)
.|++++|+..|+++.+.... | +..++..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 67889999999999876321 1 24677888889999999999999999999875 45678899999999999999999
Q ss_pred HHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004425 519 FQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIY 595 (754)
Q Consensus 519 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 595 (754)
...|+++.+ .+..+|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999998853 4678899999999999999999999999998 5677666666666778889999999999888773
Q ss_pred CCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch
Q 004425 596 GLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-----SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 596 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
.+++...+ .++..+...++.++|.+.+++. ...| +...|..+...+...|+.++|...++++++++|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 33444444 4778888889999999999865 3223 25788999999999999999999999999999987544
Q ss_pred HHHHHHHHHhcCCchHHHHHH
Q 004425 670 FILVSNMYAGQGMLDEAAKVR 690 (754)
Q Consensus 670 ~~~l~~~~~~~g~~~~a~~~~ 690 (754)
.+.++...|++++|.+.+
T Consensus 252 ---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 ---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHhhHHHH
Confidence 467888999999998876
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-14 Score=136.10 Aligned_cols=233 Identities=9% Similarity=-0.018 Sum_probs=186.0
Q ss_pred hHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCC--CCc----hhHH
Q 004425 429 EFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGY--AAD----VIVG 502 (754)
Q Consensus 429 ~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 502 (754)
.|..+...+.. .|++++|+..|++..+.. .+...+..+...+...|++++|...+..+.+..- .++ ..++
T Consensus 7 ~~~~~g~~~~~--~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 7 KEKAEGNKFYK--ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHH--hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 45556666667 888888888888888776 6677788888888888888888888888876431 111 5778
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC
Q 004425 503 NALITMYAKCGSIDGAFQIFKGISD--RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSG 579 (754)
Q Consensus 503 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 579 (754)
..+...|.+.|++++|...|++..+ ++ ...+...|++++|+..++++.. ..|+. ..+..+...+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 8888899999999999999988754 33 2456677889999999999988 55654 47888888999999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 004425 580 LSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASK 657 (754)
Q Consensus 580 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 657 (754)
++++|...|+++.+. .+.+...+..++.+|.+.|++++|++.+++. ...| ++..|..+..++...|+.++|...++
T Consensus 154 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999873 3345678889999999999999999999865 2334 68899999999999999999999999
Q ss_pred HhhccC------CCCcchHHHHHHH
Q 004425 658 RLLDLE------PKDAGSFILVSNM 676 (754)
Q Consensus 658 ~~~~~~------p~~~~~~~~l~~~ 676 (754)
++++++ |++...+..+..+
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999 8877777666543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=135.91 Aligned_cols=253 Identities=9% Similarity=-0.030 Sum_probs=126.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHH
Q 004425 399 GTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP--VTFSRLLSL 473 (754)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~ 473 (754)
.......+...|++++|...|++.. +.+...|..+...|.. .|++++|+..|++..+..-.|+. ..|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE--LAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH--TTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3344555556666666666665543 2233355555555555 56666666665555542211111 124445555
Q ss_pred HhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHH
Q 004425 474 SASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGAL 550 (754)
Q Consensus 474 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 550 (754)
+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+...+++++|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555432 22334445555555555555555555554432 12333444441222233555555
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHh
Q 004425 551 LLFEEMKREGFAPD-DISILGVLQACIYSGL---SEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 551 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (754)
..|+++.+ ..|+ ...+..+..++...|+ +++|...++++.+...-.|+.. -
T Consensus 163 ~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~---------------------- 217 (272)
T 3u4t_A 163 SSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K---------------------- 217 (272)
T ss_dssp HHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H----------------------
T ss_pred HHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h----------------------
Confidence 55555544 2233 2233334444444443 4444444444333111111100 0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCC
Q 004425 627 SPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 627 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
..-..+|..+...+...|+.++|...++++++++|+++.++..+..+....+.
T Consensus 218 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 218 ---DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred ---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 00124677788888899999999999999999999999888888777665543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-12 Score=125.56 Aligned_cols=219 Identities=10% Similarity=-0.042 Sum_probs=136.7
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCC-CChhHHHHHHHHHHH
Q 004425 468 SRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAK----CGSIDGAFQIFKGISD-RDIVSWNAMLSAYAL 542 (754)
Q Consensus 468 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 542 (754)
..+...+...|++++|...+++..+. .+...+..+...|.. .|++++|...|++..+ .+..++..+...|..
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 33333444444444444444444442 133344445555555 5666666666655432 244556666666666
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh-
Q 004425 543 ----HGLGKGALLLFEEMKREGFAPDDISILGVLQACIY----SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR- 613 (754)
Q Consensus 543 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 613 (754)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|..+|++..+ .+ +...+..+..+|..
T Consensus 87 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 87 GQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAG 159 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcC
Confidence 667777777777666643 45566666666666 6777777777777665 23 34455666666666
Q ss_pred ---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh----cCC
Q 004425 614 ---AGRLSEAMNLINSSPFSESPLLWRTLVSVSKL----MANSKFSILASKRLLDLEPKDAGSFILVSNMYAG----QGM 682 (754)
Q Consensus 614 ---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~ 682 (754)
.+++++|++.+++.-...++..+..+...+.. .++.++|...++++++.+| +..+..++.+|.. .|+
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~ 237 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRN 237 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccC
Confidence 67777777777655222456667777777777 7788888888888777755 5677778888887 788
Q ss_pred chHHHHHHHHHhhCCC
Q 004425 683 LDEAAKVRTTMNDLRL 698 (754)
Q Consensus 683 ~~~a~~~~~~m~~~~~ 698 (754)
+++|.+.+++..+.+.
T Consensus 238 ~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 238 EKQAIENFKKGCKLGA 253 (273)
T ss_dssp STTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 8888888877766543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=7e-13 Score=135.89 Aligned_cols=243 Identities=11% Similarity=0.060 Sum_probs=188.1
Q ss_pred hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccc-hHHHHHHHHHHHHhCCCCchhHHHHH
Q 004425 428 AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPD-PVTFSRLLSLSASQAC-LVRGRSLHAYSIKTGYAADVIVGNAL 505 (754)
Q Consensus 428 ~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 505 (754)
..|+.+...+.. .|++++|+..|++.++. .|+ ...|..+..++...|+ +++|...++++++.. +-+...|..+
T Consensus 98 ~a~~~lg~~~~~--~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 98 DVYDYFRAVLQR--DERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHH--TCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHH--CCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 346666666666 78888888888888875 454 4567777777888886 888888888888765 4467788888
Q ss_pred HHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-cCC
Q 004425 506 ITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIY-SGL 580 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~ 580 (754)
..+|.+.|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++ +.|+ ...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCc
Confidence 8888889999999999988753 4667888899999999999999999999998 5564 4578888888888 566
Q ss_pred HHHH-----HHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC----
Q 004425 581 SEGG-----ICLFNEIEQIYGLRPI-LEHFACMVDLLGRAG--RLSEAMNLINSSPFSE-SPLLWRTLVSVSKLMA---- 647 (754)
Q Consensus 581 ~~~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g---- 647 (754)
.++| +..|++... +.|+ ...|..+..+|...| ++++|+++++++...| +...+..++..+...|
T Consensus 251 ~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 477887765 3444 567888888888888 6888988888774445 5778888888887764
Q ss_pred ----C-hHHHHHHHHHh-hccCCCCcchHHHHHHHHHhc
Q 004425 648 ----N-SKFSILASKRL-LDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 648 ----~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 680 (754)
+ .++|+.+++++ .+++|.....|..++..+..+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 899999888888887776543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=137.57 Aligned_cols=374 Identities=10% Similarity=0.004 Sum_probs=194.5
Q ss_pred HHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh---HHHHHHHHccCCCCchhHHHHHHHHHhcC----
Q 004425 268 SVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMS---EEAERMFDAISERNLISWTALISGYVRSG---- 340 (754)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g---- 340 (754)
..+.+.|++++|.++|....+.|. ...+..|...|...|+. ++|.+.|++..+.+...+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 344455566666666666555542 22223344444445555 66666666665555555555555444444
Q ss_pred -ChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCCh---HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHH
Q 004425 341 -HGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNL---ELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSAR 416 (754)
Q Consensus 341 -~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 416 (754)
++++|+..|++..+.|... .+..+-..|...+.. ..+.+.+......|. ......|...|...+.+++
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~-- 159 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQ-- 159 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGG--
T ss_pred cCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCccc--
Confidence 5667777777776654322 333444444333322 223333333333332 3334444444544442211
Q ss_pred HHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc---chHHHHHHHHHHHHh
Q 004425 417 MLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQA---CLVRGRSLHAYSIKT 493 (754)
Q Consensus 417 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 493 (754)
..+++..+++..... .|+ .+..+...+...| +.++|...+....+.
T Consensus 160 ---------------------------~~~~a~~~~~~a~~~--~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~ 208 (452)
T 3e4b_A 160 ---------------------------HLDDVERICKAALNT--TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSR 208 (452)
T ss_dssp ---------------------------GHHHHHHHHHHHTTT--CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------CHHHHHHHHHHHHcC--CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence 222223333222211 222 4445555555555 666666666666665
Q ss_pred CCCCchhHHHHHHHHHHhc----CCHHHHHHHHhccCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHcCCCCCHH
Q 004425 494 GYAADVIVGNALITMYAKC----GSIDGAFQIFKGISDRDIVSWNAMLSA-Y--ALHGLGKGALLLFEEMKREGFAPDDI 566 (754)
Q Consensus 494 ~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~ 566 (754)
| .++...+..|..+|... +++++|...|+.....+...+..|... | ...+++++|+..|++..+.| +..
T Consensus 209 g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 209 G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 5 23333334555555443 577777777776663345566666665 3 45678888888888888765 555
Q ss_pred HHHHHHHHHHhcC-----CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHH
Q 004425 567 SILGVLQACIYSG-----LSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR----AGRLSEAMNLINSSPFSESPLLWR 637 (754)
Q Consensus 567 t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~ 637 (754)
.+..+...|. .| ++++|..+|++.. .-+...+..|..+|.. ..+.++|.+++++.....++....
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 358 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF 358 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH
Confidence 6666666666 44 8888888887763 3455666777777765 348888888888764344555666
Q ss_pred HHHHHHHh----cCChHHHHHHHHHhhccCCCCcchHHHHHHHHH--hcCCchHHHHHHHHHhh
Q 004425 638 TLVSVSKL----MANSKFSILASKRLLDLEPKDAGSFILVSNMYA--GQGMLDEAAKVRTTMND 695 (754)
Q Consensus 638 ~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~ 695 (754)
.|...|.. ..|.++|...++++.+..+.+ +...+..+.. ..++.++|.++.++.+.
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66666653 358889999998888876543 3444444433 23456666666665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-13 Score=130.51 Aligned_cols=203 Identities=10% Similarity=0.067 Sum_probs=87.3
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCCh
Q 004425 470 LLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLG 546 (754)
Q Consensus 470 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 546 (754)
+...+...|+++.|...++++.+.. +.+...+..+...|.+.|++++|...|+++.+ .+...|..+...|...|++
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 107 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY 107 (243)
T ss_dssp -------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccH
Confidence 3333344444444444444443321 22333444444444444444444444444321 2334444455555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHh
Q 004425 547 KGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 547 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (754)
++|+..++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..++.++.+.|++++|.+.+++
T Consensus 108 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 108 KEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555555422 112334444445555555555555555555441 122333444455555555555555555443
Q ss_pred C-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHH
Q 004425 627 S-PF-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNM 676 (754)
Q Consensus 627 ~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 676 (754)
+ .. +.+..+|..+..++...|+.++|...++++++++|+++..+..++.+
T Consensus 185 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 185 VTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 3 11 12344555555555555555555555555555555555544444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=9e-13 Score=128.16 Aligned_cols=195 Identities=12% Similarity=-0.055 Sum_probs=137.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 004425 499 VIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQA 574 (754)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 574 (754)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 34455566666666777777766666532 34556677777777777777777777777763 33 44566667777
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKF 651 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 651 (754)
+...|++++|..+++++.. .+..|+ ...+..++.+|.+.|++++|.+.++++ ...| +...|..+...+...|+.++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777754 224443 456667777777777777777777654 2223 57777788888888888888
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 652 SILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 652 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
|...++++++..|++...+..++.+|...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888877654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-12 Score=134.41 Aligned_cols=223 Identities=8% Similarity=0.018 Sum_probs=191.4
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhccCC---CChhHHHHHHHHH
Q 004425 465 VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGS-IDGAFQIFKGISD---RDIVSWNAMLSAY 540 (754)
Q Consensus 465 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 540 (754)
..|..+...+...|++++|...++++++.. +-+...|+.+..+|.+.|+ +++|+..|+++.+ .+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456777778889999999999999999876 4567889999999999997 9999999998854 4678999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh-cCCHH
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR-AGRLS 618 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~ 618 (754)
...|++++|+..|+++++ +.|+. ..|..+..++...|++++|+..|+++.+. -+-+...|..+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999 56754 68999999999999999999999999872 23356789999999999 67667
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcC--------
Q 004425 619 EA-----MNLINSS-PFSE-SPLLWRTLVSVSKLMA--NSKFSILASKRLLDLEPKDAGSFILVSNMYAGQG-------- 681 (754)
Q Consensus 619 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 681 (754)
+| ++.+++. ...| +...|..+...+...| +.++|...++++ +.+|+++.++..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4667654 3445 6889999999998888 689999999998 999999999999999999975
Q ss_pred -CchHHHHHHHHH
Q 004425 682 -MLDEAAKVRTTM 693 (754)
Q Consensus 682 -~~~~a~~~~~~m 693 (754)
..++|.++++++
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 358999999987
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-13 Score=129.93 Aligned_cols=196 Identities=10% Similarity=0.068 Sum_probs=155.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 004425 497 ADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVL 572 (754)
Q Consensus 497 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll 572 (754)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..++++.+. .| +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 3556677788889999999999999998854 45678899999999999999999999999984 45 456888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChH
Q 004425 573 QACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PF-SESPLLWRTLVSVSKLMANSK 650 (754)
Q Consensus 573 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~ 650 (754)
..+...|++++|..+++++.+. .+.+...+..++.++.+.|++++|.+.++++ .. +.+...|..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999873 3345678889999999999999999999876 22 346889999999999999999
Q ss_pred HHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 651 FSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 651 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+|...++++++..|+++..+..++.+|...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999988664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-12 Score=124.00 Aligned_cols=204 Identities=10% Similarity=-0.030 Sum_probs=153.9
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHH
Q 004425 466 TFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYAL 542 (754)
Q Consensus 466 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 542 (754)
.+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...|..+...|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 44455555566666666666666666543 33556667777777777888888877776642 356677888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHH
Q 004425 543 HGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAM 621 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 621 (754)
.|++++|+++++++.+.+..|+. ..+..+...+...|++++|..+++++.+. .+.+...+..++.+|.+.|++++|.
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888774445644 47777888888899999999999888773 2334677888999999999999999
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 622 NLINSS-PFS-ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 622 ~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
+.++++ ... .+...|..+...+...|+.++|...+++++++.|+++.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 998865 333 467888889999999999999999999999999998765543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-12 Score=119.72 Aligned_cols=164 Identities=14% Similarity=0.156 Sum_probs=137.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHH
Q 004425 529 DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACM 607 (754)
Q Consensus 529 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 607 (754)
+...|..+...|...|++++|++.|++.++ +.|+. .++..+..++...|++++|...++..... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 456788888888888999999999988888 55654 57888888888899999999988888662 33345567778
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchH
Q 004425 608 VDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDE 685 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 685 (754)
...+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++.+|..+|.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888899999999888765 2234 688899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 004425 686 AAKVRTTMNDL 696 (754)
Q Consensus 686 a~~~~~~m~~~ 696 (754)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999987653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-12 Score=124.08 Aligned_cols=195 Identities=11% Similarity=0.019 Sum_probs=144.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQ 573 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 573 (754)
+...+..+...|...|++++|...|+.+.+ .+...|..+...|...|++++|+..++++.+. .| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 345566666777777777777777776532 34567777777778888888888888887773 34 4456777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 004425 574 ACIYS-GLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANS 649 (754)
Q Consensus 574 a~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 649 (754)
.+... |++++|..+++++.+ .+..|+ ...+..++.++...|++++|++.++++ ...| +...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 77888 888888888887765 233333 456777788888888888888887755 2223 577788888888888888
Q ss_pred HHHHHHHHHhhccCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 650 KFSILASKRLLDLEP-KDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 650 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++|...++++++..| +++..+..++.++...|+.++|...++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888888888888888 8888888888888888888888888887765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=121.69 Aligned_cols=227 Identities=13% Similarity=-0.032 Sum_probs=190.9
Q ss_pred ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----ccchHHHHHHHHHHHHhCCCCchhH
Q 004425 426 YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSAS----QACLVRGRSLHAYSIKTGYAADVIV 501 (754)
Q Consensus 426 ~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 501 (754)
+...+..+...|.. .|++++|+..|++..+. -+...+..+...+.. .+++++|...+++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~--~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYK--EKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 44556666667777 88999999999988873 344667777788888 999999999999999886 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHhccCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004425 502 GNALITMYAK----CGSIDGAFQIFKGISD-RDIVSWNAMLSAYAL----HGLGKGALLLFEEMKREGFAPDDISILGVL 572 (754)
Q Consensus 502 ~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 572 (754)
+..+...|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 8889999999 9999999999998754 467788999999999 999999999999999865 566777788
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004425 573 QACIY----SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR----AGRLSEAMNLINSSPFSESPLLWRTLVSVSK 644 (754)
Q Consensus 573 ~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 644 (754)
..+.. .+++++|..+|++..+ .+ +...+..+..+|.. .+++++|++.+++.....++..+..+...+.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88888 8999999999999987 33 45678889999999 9999999999987632345788888999998
Q ss_pred h----cCChHHHHHHHHHhhccCCCCc
Q 004425 645 L----MANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 645 ~----~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
. .++.++|...++++++++|+++
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8 8999999999999999998754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-12 Score=135.38 Aligned_cols=344 Identities=12% Similarity=-0.009 Sum_probs=226.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCCh---HHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 004425 332 LISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNL---ELGLQLHGFAIKHGYLSDVRLGTALVDIYAK 408 (754)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 408 (754)
+...+.+.|++++|+++|++..+.|- ...+..+-..+...|+. ++|...|+...+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 56677889999999999999988763 33334444445556777 8999999888854 45556666665555
Q ss_pred CC-----CHHHHHHHHhcCC-CCChhhHHHHHHHHhhhhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 004425 409 GG-----DLKSARMLLDGFS-CKYTAEFNAILSGFMEKIADDE---EDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQAC 479 (754)
Q Consensus 409 ~g-----~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 479 (754)
.| +.++|...|++.. ..+...+..|...|.. .+.. .++.+.+......|. ......+...+...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~--~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQ--YPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGT 156 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHH--CGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTC
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCC
Confidence 55 6788988888765 3445577778887777 4443 345555555555543 3344455566666664
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhccCC---CChhHHHHHHHHHHHc----CChHHH
Q 004425 480 LVRGRSLHAYSIKTGYAADVIVGNALITMYAKCG---SIDGAFQIFKGISD---RDIVSWNAMLSAYALH----GLGKGA 549 (754)
Q Consensus 480 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A 549 (754)
++.+........+.-...++..+..|..+|.+.| +.++|...|+...+ ++...+..|...|... +++++|
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 4443333333333222334558888999999999 89999999987753 3444446677777554 689999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC-----CHHHHH
Q 004425 550 LLLFEEMKREGFAPDDISILGVLQA-C--IYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG-----RLSEAM 621 (754)
Q Consensus 550 ~~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~ 621 (754)
+..|++.. .| +...+..+... + ...+++++|..+|++..+ .| +...+..|..+|. .| ++++|+
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 99999987 32 44555566655 3 468899999999999887 35 5667778888887 55 999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh----cCCchHHHHHHHHH
Q 004425 622 NLINSSPFSESPLLWRTLVSVSKL----MANSKFSILASKRLLDLEPKDAGSFILVSNMYAG----QGMLDEAAKVRTTM 693 (754)
Q Consensus 622 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m 693 (754)
++|++.. ..++..+..|...|.. ..|.++|...++++.+ +.++.+...|+.+|.. ..+.++|..++++.
T Consensus 308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 9999887 6688888888877766 3499999999999887 4567789999999985 45899999999998
Q ss_pred hhCCCc
Q 004425 694 NDLRLS 699 (754)
Q Consensus 694 ~~~~~~ 699 (754)
.+.|..
T Consensus 385 ~~~g~~ 390 (452)
T 3e4b_A 385 KAQDTP 390 (452)
T ss_dssp HTTCCH
T ss_pred HHCCCH
Confidence 887753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.7e-12 Score=119.89 Aligned_cols=205 Identities=10% Similarity=-0.045 Sum_probs=145.4
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHH
Q 004425 466 TFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYAL 542 (754)
Q Consensus 466 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 542 (754)
.+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|+++.+ .+..+|..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444455555555555555555555443 23455566666677777777777777766532 355677778888888
Q ss_pred c-CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHH
Q 004425 543 H-GLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 543 ~-g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 620 (754)
. |++++|+..++++.+.+..|+. ..+..+..++...|++++|..+++++.+. .+.+...+..++.++.+.|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 8 8888888888888874344543 56777788888888888888888888762 233466777888888888888888
Q ss_pred HHHHHhC-CC-C-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 621 MNLINSS-PF-S-ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 621 ~~~~~~~-~~-~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
.+.++++ .. + .+...|..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 8888765 22 2 4577777777888889999999999999999999988766554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.6e-13 Score=142.88 Aligned_cols=192 Identities=8% Similarity=-0.049 Sum_probs=150.5
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004425 498 DVIVGNALITMYAKCGSI-DGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQ 573 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 573 (754)
+...+..+...|...|++ ++|.+.|++..+ .+...|..+..+|...|++++|+..|++.++ +.|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 455556666666666666 666666665532 3456777788888888888888888888887 5577677777777
Q ss_pred HHHhc---------CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCC----
Q 004425 574 ACIYS---------GLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA--------GRLSEAMNLINSS-PFSE---- 631 (754)
Q Consensus 574 a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p---- 631 (754)
++... |++++|+..|+++.+. .+.+...|..+..+|... |++++|++.+++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88787 8888888888888762 233456777888888887 8888888888765 2234
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
++..|..+..++...|++++|...++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999999999765443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-12 Score=133.84 Aligned_cols=127 Identities=10% Similarity=0.006 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LEHFACMVDLLGRAGRLSEAMNLINSS----PFSES----PL 634 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 634 (754)
++..+...+...|++++|..++++..+...-.++ ...+..++.+|...|++++|.+.+++. +..++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 3444455555555555555555554432111111 124445555555555555555555432 00111 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhccCCCC------cchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 635 LWRTLVSVSKLMANSKFSILASKRLLDLEPKD------AGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 635 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|...+++.
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44455555555555555555555555543332 334555555555555555555555554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-11 Score=120.31 Aligned_cols=228 Identities=9% Similarity=-0.068 Sum_probs=180.5
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCC--CChh----hHHHHH
Q 004425 361 SSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSC--KYTA----EFNAIL 434 (754)
Q Consensus 361 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li 434 (754)
...+......+...|+++.|...++.+++.. +.+...+..+...|...|++++|...|++... .+.. .|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445566777889999999999999999864 33556888899999999999999999987753 2222 378888
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 004425 435 SGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGS 514 (754)
Q Consensus 435 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 514 (754)
..+.. .|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...++
T Consensus 82 ~~~~~--~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 82 KILMK--KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHH--cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 89999 999999999999999863 2344788899999999999999999999998763 4466777777734444569
Q ss_pred HHHHHHHHhccCC---CChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHHhcCCH
Q 004425 515 IDGAFQIFKGISD---RDIVSWNAMLSAYALHGL---GKGALLLFEEMKREG-FAPDD------ISILGVLQACIYSGLS 581 (754)
Q Consensus 515 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~ 581 (754)
+++|...|+++.+ .+...|..+...+...|+ +++|+..|++..+.. -.|+. ..|..+...+...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999998853 346788888889988898 888999999988632 12432 4667777788888888
Q ss_pred HHHHHHHHHHHH
Q 004425 582 EGGICLFNEIEQ 593 (754)
Q Consensus 582 ~~a~~~~~~~~~ 593 (754)
++|..+|+++.+
T Consensus 238 ~~A~~~~~~al~ 249 (272)
T 3u4t_A 238 VKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888888866
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-12 Score=136.05 Aligned_cols=257 Identities=12% Similarity=0.001 Sum_probs=179.1
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhcccchHHHHHHHHHHHHh----CC-CCchhHHHH
Q 004425 435 SGFMEKIADDEEDVMVLFSQQRLAGMEPDP-----VTFSRLLSLSASQACLVRGRSLHAYSIKT----GY-AADVIVGNA 504 (754)
Q Consensus 435 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 504 (754)
..+.. .|++++|+..|++..+. .|+. ..+..+...+...|+++.|...++++.+. +. +.....+..
T Consensus 56 ~~~~~--~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 56 ERLCN--AGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHH--hCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 34444 66666666666666664 2332 34556666666777777777777666543 11 223455667
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-----C----ChhHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 004425 505 LITMYAKCGSIDGAFQIFKGISD-----R----DIVSWNAMLSAYALHGL-----------------GKGALLLFEEMKR 558 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~ 558 (754)
+...|...|++++|...|++..+ . ...+|..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 77777888888888887776532 1 23467777888888888 8888888877654
Q ss_pred c----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 004425 559 E----GFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LEHFACMVDLLGRAGRLSEAMNLINSS-- 627 (754)
Q Consensus 559 ~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 627 (754)
. +-.|.. .++..+...+...|++++|..++++..+...-.++ ...+..++.+|...|++++|.+.+++.
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 112222 36777788888899999999998887663211112 236778888999999999999888754
Q ss_pred --CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC------cchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 628 --PFSE----SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD------AGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 628 --~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+... ...++..+...+...|++++|...+++++++.++. ...+..++.+|...|++++|...+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 25677888889999999999999999999875543 34888999999999999999999988754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-12 Score=118.30 Aligned_cols=111 Identities=16% Similarity=0.068 Sum_probs=45.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHH
Q 004425 544 GLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMN 622 (754)
Q Consensus 544 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 622 (754)
|++++|+..|++.++ +.|+. ..+..+..++...|++++|+..|+++.+ .. .+...+..+..+|...|++++|++
T Consensus 98 g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~--~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 98 GYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALA-LE--DTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cc--cchHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555544 23332 3444444455555555555555555544 22 344444455555555555555555
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 004425 623 LINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRL 659 (754)
Q Consensus 623 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 659 (754)
.+++. ...| ++..+..+...+...|+.++|...++++
T Consensus 173 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 173 QYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55433 1122 3445555555555555555555555443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-12 Score=127.99 Aligned_cols=258 Identities=13% Similarity=0.073 Sum_probs=187.8
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhcccchHHHHHHHHHHHHh----CCC-CchhHHHH
Q 004425 435 SGFMEKIADDEEDVMVLFSQQRLAGMEPD-----PVTFSRLLSLSASQACLVRGRSLHAYSIKT----GYA-ADVIVGNA 504 (754)
Q Consensus 435 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 504 (754)
..+.. .|++++|+..|++..+.. |+ ...+..+...+...|+++.|...++.+.+. +.. ....++..
T Consensus 13 ~~~~~--~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 13 ERLCK--SGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH--hccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 34445 777777777777777652 33 245666677777778888887777776542 211 22556677
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 004425 505 LITMYAKCGSIDGAFQIFKGISD-----RD----IVSWNAMLSAYALHGL--------------------GKGALLLFEE 555 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 555 (754)
+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|+..+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 78888888888888888877642 22 2367778888888888 8888888887
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHh
Q 004425 556 MKRE----GFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LEHFACMVDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 556 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (754)
..+. +..|. ...+..+...+...|++++|..++++..+...-.++ ...+..++.+|...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6642 21222 236777888889999999999999987653211122 23678889999999999999998876
Q ss_pred C----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC------cchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 627 S----PFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD------AGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 627 ~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
. +..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4 11122 5677888899999999999999999999876553 34788999999999999999999998
Q ss_pred HhhC
Q 004425 693 MNDL 696 (754)
Q Consensus 693 m~~~ 696 (754)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-11 Score=121.85 Aligned_cols=239 Identities=10% Similarity=-0.082 Sum_probs=140.2
Q ss_pred cCChhHHHHHHHHhHhcCcc---cChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHH
Q 004425 339 SGHGGKAINGFLEFLDLGIC---CDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSA 415 (754)
Q Consensus 339 ~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 415 (754)
.|++++|+..|+++.+.... .+..++..+...+...|+++.|...++.+.+.. +.+...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45566666666666654211 123445555556666666666666666666643 23455666666667777777777
Q ss_pred HHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 004425 416 RMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIK 492 (754)
Q Consensus 416 ~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 492 (754)
...|++.. +.+...|..+...|.. .|++++|+..|+++.+. .|+.......+..+...|++++|...+.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYY--GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHH--hccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 66666554 3345566667777777 77777777777777765 45544444444555666777777777776666
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 004425 493 TGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRD-------IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD 565 (754)
Q Consensus 493 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 565 (754)
.. +++...+ .++..+...++.++|...++...+.+ ...|..+...|...|++++|...|++.++ ..|+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh
Confidence 53 2333333 35556666666777777776665432 34566666666677777777777776666 34432
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 004425 566 ISILGVLQACIYSGLSEGGICLF 588 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~ 588 (754)
. .....++...|++++|++.+
T Consensus 249 ~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--HHHHHHHHHHHHHHHC----
T ss_pred H--HHHHHHHHHHHHHHhhHHHH
Confidence 1 11233444555555555544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-12 Score=141.13 Aligned_cols=160 Identities=13% Similarity=0.102 Sum_probs=135.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHH
Q 004425 530 IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACM 607 (754)
Q Consensus 530 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 607 (754)
..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|+..|++..+ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 45678888888888888888888888888 56764 5788888888888888888888888866 3444 5678888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchH
Q 004425 608 VDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDE 685 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 685 (754)
..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888765 3445 688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 004425 686 AAKVRTTMN 694 (754)
Q Consensus 686 a~~~~~~m~ 694 (754)
|.+.+++..
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888774
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-12 Score=134.91 Aligned_cols=153 Identities=10% Similarity=0.012 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----cc
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGF-APD----DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LE 602 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 602 (754)
+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..++++......-.++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 566677777777777777777777664211 111 126667777788888888888888776552111111 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC------Ccc
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS----PFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPK------DAG 668 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 668 (754)
++..++.+|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+. ...
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 6677888888888888888887654 11122 567788889999999999999999999887433 356
Q ss_pred hHHHHHHHHHhcCCch
Q 004425 669 SFILVSNMYAGQGMLD 684 (754)
Q Consensus 669 ~~~~l~~~~~~~g~~~ 684 (754)
++..++.+|...|+..
T Consensus 349 ~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhHhH
Confidence 7888999999988764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-09 Score=117.06 Aligned_cols=413 Identities=9% Similarity=0.005 Sum_probs=253.6
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCC---chHHHHHHHHHHHhc-CCCChhHHH
Q 004425 224 DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLG---VEEGKQLHGLAVKFG-VVREISVGN 299 (754)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~~~ 299 (754)
|..+|..+|..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ .+.+.++|+..+... ..|++..|.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6667777777777777777777777777765 23334445555666566666 777777777776653 135666676
Q ss_pred HHHHHHHhcCCh--------HHHHHHHHccC------CC-CchhHHHHHHHHHh---------cCChhHHHHHHHHhHhc
Q 004425 300 AIVTMYGKHGMS--------EEAERMFDAIS------ER-NLISWTALISGYVR---------SGHGGKAINGFLEFLDL 355 (754)
Q Consensus 300 ~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~ 355 (754)
..+....+.++. +...++|+... ++ +...|...+.-... +++++.+..+|++.+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 666655554433 22335555422 12 23456655554332 23345566666665532
Q ss_pred CcccChhhHH---HHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhc-------CCC-
Q 004425 356 GICCDSSCLA---TVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDG-------FSC- 424 (754)
Q Consensus 356 g~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~- 424 (754)
....-..+|. .+.... +. ..+..++.+. ...++.|...+.. +..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~---~~-~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDV---NQ-LTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHH---CT-TTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccHHHHHHHHHHHHHHHhc---Cc-chHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhc
Confidence 1110011111 111111 00 0011111110 0111222222211 110
Q ss_pred --C-------------C------hhhHHHHHHHHhhhhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 004425 425 --K-------------Y------TAEFNAILSGFMEKIAD-------DEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSAS 476 (754)
Q Consensus 425 --~-------------~------~~~~~~li~~~~~~~~~-------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 476 (754)
. + ...|...+.---. .+ ..+.+..+|++.+.. +.-+...|.....-+..
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~--~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESD--NKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGE 355 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHT--CTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHh--CCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Confidence 0 0 1234444432222 22 134456678887765 23355677777777778
Q ss_pred ccchHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-------------CC------------h
Q 004425 477 QACLVRGR-SLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD-------------RD------------I 530 (754)
Q Consensus 477 ~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~ 530 (754)
.|+.+.|. .+++.+... ++.+...+-.++....+.|+++.|..+|+.+.+ |+ .
T Consensus 356 ~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp HSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 88888896 999999874 456777788889999999999999999998753 31 2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIY-SGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
..|-..+....+.|..+.|..+|.+.++.-..+....|......-.+ .++++.|.++|+...+. ++-+...+...++
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHH
Confidence 36888888888889999999999999885111122333332222223 35599999999999885 3344556778999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSE----SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
.+...|+.+.|..+|++. ...| ....|..++..-..+|+.+.+..+.+++.+..|+++.
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 999999999999999975 2223 3578999999999999999999999999999999653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.4e-12 Score=129.39 Aligned_cols=223 Identities=8% Similarity=-0.031 Sum_probs=145.8
Q ss_pred HHHhcccchHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC-----hhHHHHH
Q 004425 472 SLSASQACLVRGRSLHAYSIKT----GYAA-DVIVGNALITMYAKCGSIDGAFQIFKGISD-----RD-----IVSWNAM 536 (754)
Q Consensus 472 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l 536 (754)
..+...|++++|...+.++.+. +-.+ ...++..+...|...|++++|...+++..+ ++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3455666677776666666543 1111 235566677777777777777777765532 11 2467777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---CC-CCCccHHHHH
Q 004425 537 LSAYALHGLGKGALLLFEEMKREGFA-PDD----ISILGVLQACIYSGLSEGGICLFNEIEQIY---GL-RPILEHFACM 607 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~~l 607 (754)
...|...|++++|+..|++.++.... ++. .++..+...|...|++++|..++++..+.. +. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 77888888888888888777642111 111 367777778888888888888888776521 22 2224567778
Q ss_pred HHHHhhcCCHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCC---hHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 608 VDLLGRAGRLSEAMNLINSS----PF--SE-SPLLWRTLVSVSKLMAN---SKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
+.+|.+.|++++|.+.+++. +. .| ....+..+...+...|+ .++|...+++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 88888888888888887654 11 12 12234556666777777 77777777766 33344456788899999
Q ss_pred HhcCCchHHHHHHHHHhh
Q 004425 678 AGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 678 ~~~g~~~~a~~~~~~m~~ 695 (754)
...|++++|...+++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999888754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-11 Score=112.67 Aligned_cols=166 Identities=11% Similarity=0.056 Sum_probs=140.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQ 573 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 573 (754)
+..+|..+...|.+.|++++|...|++..+ .+..+|..+...|.+.|++++|+..+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 567788899999999999999999988753 45678889999999999999999999999884 454 456777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 004425 574 ACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKF 651 (754)
Q Consensus 574 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 651 (754)
.+...++++.|...+.+.... .+.+...+..++.+|.+.|++++|++.+++. ...| ++.+|..+..++...|+.++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888999999999999998762 3345677889999999999999999999865 3344 68899999999999999999
Q ss_pred HHHHHHHhhccCCCCc
Q 004425 652 SILASKRLLDLEPKDA 667 (754)
Q Consensus 652 a~~~~~~~~~~~p~~~ 667 (754)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999864
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-11 Score=129.06 Aligned_cols=269 Identities=12% Similarity=0.018 Sum_probs=165.5
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhh
Q 004425 364 LATVIDGCSVCSNLELGLQLHGFAIKHGYLSD---VRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEK 440 (754)
Q Consensus 364 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 440 (754)
+..+...+...|+++.|...++.+++.+.... ..++..+...|...|++++|...|+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~-------------------- 110 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHK-------------------- 110 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHH--------------------
Confidence 33344455666777777777766666532211 1345555555555555555555544
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcccchHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHH
Q 004425 441 IADDEEDVMVLFSQQRLA----GMEP-DPVTFSRLLSLSASQACLVRGRSLHAYSIKT----GY-AADVIVGNALITMYA 510 (754)
Q Consensus 441 ~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~ 510 (754)
+..+. +-.| ....+..+...+...|++++|...+.++.+. +- +....++..+...|.
T Consensus 111 -------------~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 111 -------------HDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp -------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 33221 1011 1134444445555555555555555554432 11 112345555666666
Q ss_pred hcCC-----------------HHHHHHHHhccCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-C
Q 004425 511 KCGS-----------------IDGAFQIFKGISD-----R----DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFA-P 563 (754)
Q Consensus 511 ~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p 563 (754)
..|+ +++|...+++..+ . ...+|..+...|...|++++|+..+++..+.... +
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 6666 6666666655421 1 1236777788888888888888888887752111 1
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHhC-------C
Q 004425 564 D----DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LEHFACMVDLLGRAGRLSEAMNLINSS-------P 628 (754)
Q Consensus 564 ~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~ 628 (754)
+ ..++..+...+...|++++|..++++......-..+ ...+..++.+|...|++++|.+.+++. +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 2 126777888888899999999988887653211111 356778888899999999999888765 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 629 FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 629 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
..+ ...++..+...+...|+.++|...+++++++.+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 111 2457788889999999999999999999998776
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-09 Score=115.00 Aligned_cols=434 Identities=7% Similarity=-0.045 Sum_probs=272.1
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC---hHHHHHH
Q 004425 241 SEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGM---SEEAERM 317 (754)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~ 317 (754)
..+.+..|++-...+. -|..+|..++..+.+.+.++.+..+++.++.. ++.....|...+..-.+.|. ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 4445545555544432 37778888888888888888888888888776 45667777777777777777 8888888
Q ss_pred HHccCC-----CCchhHHHHHHHHHhcCCh----hH----HHHHHHHhHh-cCc-ccCh-hhHHHHHHHhc---------
Q 004425 318 FDAISE-----RNLISWTALISGYVRSGHG----GK----AINGFLEFLD-LGI-CCDS-SCLATVIDGCS--------- 372 (754)
Q Consensus 318 ~~~~~~-----~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~~~~~ll~~~~--------- 372 (754)
|++... +++..|...+.-..+.++. ++ ..++|+..+. .|. .|+. ..|...+.-..
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 887653 5666777776655554443 22 3355555443 344 4433 33433333221
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHH
Q 004425 373 VCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLF 452 (754)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~ 452 (754)
..++++.+..+|..++......-..+|......-...+. ..+.+++.+. ..+++.|...+
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-------------------~~~y~~Ar~~~ 265 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-------------------SAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-------------------HHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-------------------hHHHHHHHHHH
Confidence 122345566666665532111112222221111000000 0011111110 22344455555
Q ss_pred HHHHH--cCCC---------------C-----C---HHHHHHHHHHHhccc-------chHHHHHHHHHHHHhCCCCchh
Q 004425 453 SQQRL--AGME---------------P-----D---PVTFSRLLSLSASQA-------CLVRGRSLHAYSIKTGYAADVI 500 (754)
Q Consensus 453 ~~m~~--~g~~---------------p-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~ 500 (754)
.++.. .++. | + ...|...+.---..+ ..+.+..++++++.. ++-+..
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHH
Confidence 44322 1111 1 0 023333333222221 134456778888775 355788
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHhccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---------CCC---
Q 004425 501 VGNALITMYAKCGSIDGAF-QIFKGISD--R-DIVSWNAMLSAYALHGLGKGALLLFEEMKREGF---------APD--- 564 (754)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~--- 564 (754)
+|-..+..+...|+.++|. .+|++... | +...|-..+...-+.|++++|.++|+++++... .|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 8888888899999999996 99988753 3 455677888888999999999999999986310 142
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC-CHHHHHHHHHhC--CCCCC
Q 004425 565 ---------DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG-RLSEAMNLINSS--PFSES 632 (754)
Q Consensus 565 ---------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~ 632 (754)
...|...+....+.|..+.|..+|.++.+. .-.+....|...+.+-.+.| +.+.|.++|+.. ..+.+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 235777778888899999999999999873 11223345554444445554 589999999865 23347
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLDLEPK---DAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
+..|..++......|+.+.|..+|++++...|+ ....|......-...|+.+.+.++.+++.+.-.
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 888999999888999999999999999998883 456788888888899999999999999976544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-10 Score=112.81 Aligned_cols=218 Identities=11% Similarity=0.078 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-------cccch-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 004425 446 EDVMVLFSQQRLAGMEPDPVTFSRLLSLSA-------SQACL-------VRGRSLHAYSIKTGYAADVIVGNALITMYAK 511 (754)
Q Consensus 446 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 511 (754)
++|..+|++..... +-+...|..+...+. ..|++ ++|..+++++++.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777641 223345555555543 34664 7788888887773223455677788888888
Q ss_pred cCCHHHHHHHHhccCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH-hcCCHHHHH
Q 004425 512 CGSIDGAFQIFKGISD--R-DIV-SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACI-YSGLSEGGI 585 (754)
Q Consensus 512 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~-~~g~~~~a~ 585 (754)
.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++.++. .|+. ..|........ ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888887754 3 233 6888888888888888888888888773 3433 34433333222 368888888
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 004425 586 CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS----PFSE--SPLLWRTLVSVSKLMANSKFSILASKRL 659 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 659 (754)
.+|++..+.. +-+...|..++..+.+.|++++|+.+|++. +..| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888877632 234567777888888888888888888765 1244 4667888888888888888888888888
Q ss_pred hccCCCCcc
Q 004425 660 LDLEPKDAG 668 (754)
Q Consensus 660 ~~~~p~~~~ 668 (754)
++..|++..
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 888887553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.1e-11 Score=113.66 Aligned_cols=162 Identities=7% Similarity=-0.065 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVD 609 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 609 (754)
..|......+...|++++|+..|++.++....++...+..+..++...|++++|+..|++..+ ..| +...+..++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHH
Confidence 344444444444455555555555444432223334444444444455555555555554433 122 2334444455
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCChHHHHHHHHHhhccCCC--CcchHHHHHHHHH
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSE-SP-------LLWRTLVSVSKLMANSKFSILASKRLLDLEPK--DAGSFILVSNMYA 678 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~ 678 (754)
+|...|++++|++.+++. ...| ++ ..|..+...+...|++++|+..++++++++|+ ++.++..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 555555555555544433 1112 22 33444555555555555555555555555555 5555555555555
Q ss_pred hcCCc---------------------------hHHHHHHHHHhh
Q 004425 679 GQGML---------------------------DEAAKVRTTMND 695 (754)
Q Consensus 679 ~~g~~---------------------------~~a~~~~~~m~~ 695 (754)
..|+. ++|...+++..+
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555 888888887765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-10 Score=116.67 Aligned_cols=213 Identities=9% Similarity=0.009 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhccCC---C-ChhHHHHHHHHHHH
Q 004425 481 VRGRSLHAYSIKTGYAADVIVGNALITMYA-------KCGSI-------DGAFQIFKGISD---R-DIVSWNAMLSAYAL 542 (754)
Q Consensus 481 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 542 (754)
+.|..+++++++.. +.++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888753 557778888887776 35885 999999998754 3 45689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHh-hcCCHHH
Q 004425 543 HGLGKGALLLFEEMKREGFAPDDI--SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLG-RAGRLSE 619 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 619 (754)
.|++++|..+|++.++ +.|+.. .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 667643 7889999999999999999999999762 2333445544444432 3699999
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhcc---CCC-CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 620 AMNLINSS-PFS-ESPLLWRTLVSVSKLMANSKFSILASKRLLDL---EPK-DAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 620 A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
|.++|++. ... .++..|..++..+...|+.++|..+++++++. .|+ ....|..++..+...|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999876 222 37899999999999999999999999999995 554 6678999999999999999999999988
Q ss_pred hhCCC
Q 004425 694 NDLRL 698 (754)
Q Consensus 694 ~~~~~ 698 (754)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 76543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-12 Score=127.81 Aligned_cols=235 Identities=14% Similarity=0.048 Sum_probs=114.0
Q ss_pred hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHh------C
Q 004425 428 AEFNAILSGFMEKIADDEEDVMVLFSQQRLA-------GMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKT------G 494 (754)
Q Consensus 428 ~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 494 (754)
..+..+...+.. .|++++|+.+|++..+. ........+..+...+...|++++|...+.++.+. +
T Consensus 28 ~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 28 RTLHNLVIQYAS--QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356666667777 77777777777776652 11112234555555566666666666666655543 1
Q ss_pred C-CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCCH-H
Q 004425 495 Y-AADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKRE------GFAPDD-I 566 (754)
Q Consensus 495 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~ 566 (754)
- +....++..+...|...|++++|...|+ +..+. +-.|+. .
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCK-------------------------------RALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHH-------------------------------HHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHH-------------------------------HHHHHHHHhcCCCChHHHH
Confidence 1 1123344444455555555555555544 44432 111211 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh-----CCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhCC----------CC
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIY-----GLRPI-LEHFACMVDLLGRAGRLSEAMNLINSSP----------FS 630 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~ 630 (754)
.+..+...+...|++++|..+++++.+.. +..|. ...+..++.+|.+.|++++|.+.++++- ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34444444445555555555554443310 00111 2234444555555555555555444320 00
Q ss_pred C-------CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 631 E-------SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 631 p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+ ....+..+...+...+.+.++...++++....|.++.++..++.+|...|++++|.+.+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 1112222333344455666677777787778888888888888889888999999888887644
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=121.10 Aligned_cols=228 Identities=7% Similarity=-0.042 Sum_probs=173.4
Q ss_pred HHhhhhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHhcccchHHHHHHHHHHHHhC--C----CCchhHHHH
Q 004425 436 GFMEKIADDEEDVMVLFSQQRLAG-MEPD----PVTFSRLLSLSASQACLVRGRSLHAYSIKTG--Y----AADVIVGNA 504 (754)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~m~~~g-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~ 504 (754)
.+.. .|++++|+..|++..+.- -.++ ..++..+...+...|+++.|...+.++.+.. . +....+++.
T Consensus 112 ~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 112 YELD--QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHH--TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHH--hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 4445 788888888888876531 1122 2467777788888888888888888887541 1 112456788
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 004425 505 LITMYAKCGSIDGAFQIFKGISD-----RDI----VSWNAMLSAYALHGLGKGALLLFEEMKRE----GFAPD-DISILG 570 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ 570 (754)
+...|...|++++|...|++..+ ++. .+|..+...|...|++++|+..+++..+. +..|+ ..++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 88999999999999999987742 222 47888999999999999999999998862 33243 357888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHh---CCCCCccHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIY---GLRPILEHFACMVDLLGRAGR---LSEAMNLINSSPFSES-PLLWRTLVSVS 643 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~ 643 (754)
+...+...|++++|..++++..+.. +.+.....+..+..+|...|+ +++|++++++....|+ ...+..+...+
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999886632 122223346778899999999 9999999999865553 55777889999
Q ss_pred HhcCChHHHHHHHHHhhccCCC
Q 004425 644 KLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 644 ~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
...|+.++|...+++++++...
T Consensus 350 ~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.9e-11 Score=120.09 Aligned_cols=134 Identities=10% Similarity=0.001 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----cc
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFA-PD----DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LE 602 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 602 (754)
.+..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|..++++......-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4566666777777777777777766542100 11 125666677777778888888877776552111111 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-------PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
.+..++.+|...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++.++
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 5667778888888888888877654 1111 2457778888999999999999999999988765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=7.5e-11 Score=108.09 Aligned_cols=159 Identities=16% Similarity=0.042 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 004425 501 VGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACI 576 (754)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~ 576 (754)
.+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+. .| +...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 344455555555666666666655543 23344555555555555555555555555542 22 2234444444444
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004425 577 YSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILAS 656 (754)
Q Consensus 577 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 656 (754)
..|++++|..+++++.+. .+.+...|..+...+...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 555555555554444331 1235667777778888888888888888
Q ss_pred HHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 657 KRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 657 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+++++..|+++..+..++.+|...|++++|...+++..+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888887754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-11 Score=126.89 Aligned_cols=177 Identities=8% Similarity=0.007 Sum_probs=155.4
Q ss_pred HHHHHHHHhccC---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004425 515 IDGAFQIFKGIS---DRDIVSWNAMLSAYALHGLG-KGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFN 589 (754)
Q Consensus 515 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 589 (754)
++++...++... ..+...|..+...|...|++ ++|++.|++.++ ..|+ ...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666665543 24677899999999999999 999999999998 4565 5689999999999999999999999
Q ss_pred HHHHHhCCCCCccHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CChH
Q 004425 590 EIEQIYGLRPILEHFACMVDLLGRA---------GRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLM--------ANSK 650 (754)
Q Consensus 590 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~ 650 (754)
+..+ +.|+...+..+..+|... |++++|++.+++. ...| +...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9955 568888899999999999 9999999999876 3344 689999999999998 9999
Q ss_pred HHHHHHHHhhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 651 FSILASKRLLDLEP---KDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 651 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+|+..++++++++| +++..|..++.+|...|++++|...+++..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999988663
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-10 Score=109.96 Aligned_cols=206 Identities=13% Similarity=-0.011 Sum_probs=145.2
Q ss_pred CCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhHHHHHHH
Q 004425 462 PDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--R-DIVSWNAMLS 538 (754)
Q Consensus 462 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 538 (754)
.|...+......+...|++++|...++.+.+..-+++...+..+...|...|++++|...|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 345667777777888888888888888888876436666666688888888888888888887743 3 3457777888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC---ccHHHHH
Q 004425 539 AYALHGLGKGALLLFEEMKREGFAPDD--------ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI---LEHFACM 607 (754)
Q Consensus 539 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 607 (754)
.|...|++++|+..|++.++ ..|+. ..|..+...+...|++++|+..|+++.+ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 88888888888888888887 44543 2466666777788888888888888743 4554 4566677
Q ss_pred HHHHhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 608 VDLLGRAGRL--SEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 608 ~~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
..+|...|+. ++|..+. ..+...+.... ....+.+++|...++++++++|+++.+...++.+...
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 7777665543 2222211 12333333322 3345667999999999999999999888888776543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-11 Score=121.58 Aligned_cols=239 Identities=11% Similarity=0.019 Sum_probs=151.4
Q ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHhcCCC--------CC---hhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHc----
Q 004425 394 SDVRLGTALVDIYAKGGDLKSARMLLDGFSC--------KY---TAEFNAILSGFMEKIADDEEDVMVLFSQQRLA---- 458 (754)
Q Consensus 394 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~---- 458 (754)
.+..++..+...|...|++++|...|+++.. .+ ...+..+...|.. .|++++|+..+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD--QNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999987753 22 2357778888888 99999999999998864
Q ss_pred --CCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHh------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 004425 459 --GMEPD-PVTFSRLLSLSASQACLVRGRSLHAYSIKT------GYAA-DVIVGNALITMYAKCGSIDGAFQIFKGISDR 528 (754)
Q Consensus 459 --g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 528 (754)
+-.|. ..++..+...+...|++++|...+.++.+. +..| ...
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---------------------------- 154 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK---------------------------- 154 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH----------------------------
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH----------------------------
Confidence 22233 357788889999999999999999988764 1111 122
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh------
Q 004425 529 DIVSWNAMLSAYALHGLGKGALLLFEEMKRE------GFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIY------ 595 (754)
Q Consensus 529 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------ 595 (754)
.|..+...|...|++++|+.+++++.+. +..|+. .++..+...+...|++++|..+++++.+..
T Consensus 155 ---~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 231 (311)
T 3nf1_A 155 ---QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231 (311)
T ss_dssp ---HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3444455555555555555555555542 112322 255566666666677777776666665411
Q ss_pred CCCCCcc-------HHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 596 GLRPILE-------HFACMVDLLGRAGRLSEAMNLINSSP-FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 596 ~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
...+... .+..+...+...+.+.+|...++... ..| +..+|..+..++...|++++|...+++++++.|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1112211 12223333444555555566665552 233 5778889999999999999999999999998875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.4e-09 Score=107.44 Aligned_cols=254 Identities=11% Similarity=0.002 Sum_probs=171.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhcccchHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhc
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPV----TFSRLLSLSASQACLVRGRSLHAYSIKT----GYA-ADVIVGNALITMYAKC 512 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~ 512 (754)
.|++++|...+++.....-..+.. .+..+...+...|+++.|...+.+..+. |.. ....++..+...+...
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 677777777777766543111211 3444555666777788777777776643 110 0123345677778888
Q ss_pred CCHHHHHHHHhccCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHHHh
Q 004425 513 GSIDGAFQIFKGISD-------R----DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFA--P--DDISILGVLQACIY 577 (754)
Q Consensus 513 g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~a~~~ 577 (754)
|++++|...+++... + ....+..+...+...|++++|...+++..+.... + ...++..+...+..
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 186 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 186 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence 888888888876632 1 1235666778888899999999999988763322 1 12467777788889
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccHHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhc
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPILEHFA-----CMVDLLGRAGRLSEAMNLINSSP-FSES-----PLLWRTLVSVSKLM 646 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~ 646 (754)
.|++++|..++++......-......+. ..+..+...|++++|...+++.. ..|. ...+..+...+...
T Consensus 187 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 266 (373)
T 1hz4_A 187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 266 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHc
Confidence 9999999999998876322211111122 23445778999999999998762 1121 33567788888899
Q ss_pred CChHHHHHHHHHhhccCCCC------cchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 647 ANSKFSILASKRLLDLEPKD------AGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 647 g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
|+.++|...++++++..+.. ...+..++.+|...|++++|...+++...
T Consensus 267 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 267 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999988764431 23677889999999999999999888754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=5.1e-10 Score=102.43 Aligned_cols=168 Identities=14% Similarity=0.028 Sum_probs=134.1
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHH
Q 004425 465 VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYA 541 (754)
Q Consensus 465 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 541 (754)
..+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...++++.+ .+...|..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777888899999999999999987653 44678889999999999999999999998753 46778899999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHH
Q 004425 542 LHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAM 621 (754)
Q Consensus 542 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 621 (754)
..|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+. .
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~------------------------- 140 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-R------------------------- 140 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------------------------
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-C-------------------------
Confidence 9999999999999999842 224567777888888888888888888887662 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc
Q 004425 622 NLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 622 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
+.+...|..+...+...|+.++|...+++++++.|+++.
T Consensus 141 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 141 --------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred --------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 124556667777777777778888888888777777554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-10 Score=118.50 Aligned_cols=222 Identities=13% Similarity=0.012 Sum_probs=136.8
Q ss_pred HHhcccchHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC-----hhHHHHHH
Q 004425 473 LSASQACLVRGRSLHAYSIKTG--YA---ADVIVGNALITMYAKCGSIDGAFQIFKGISD-----RD-----IVSWNAML 537 (754)
Q Consensus 473 ~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li 537 (754)
.+...|+++.|...+.++.+.. +. ....++..+...|...|+++.|...+++..+ ++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3445666666666666665431 11 1234556666677777777777666665421 11 23566777
Q ss_pred HHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---CCCCCccHHHHHHH
Q 004425 538 SAYALHGLGKGALLLFEEMKRE----GFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIY---GLRPILEHFACMVD 609 (754)
Q Consensus 538 ~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~ 609 (754)
..|...|++++|++.|++.++. +-.+. ..++..+..++...|++++|..++++..+.. +.+....++..++.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 7777788888888777776642 11111 1356667777778888888888887765511 22222456667778
Q ss_pred HHhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 610 LLGRAGRLSEAMNLINSS----PF--SES-PLLWRTLVSVSKLMAN---SKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
+|.+.|++++|.+.+++. .. .|. ...+..+...+...++ .++|...+++. ...|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 888888888888877654 11 122 3344455555556666 66666666652 2233345567788888999
Q ss_pred cCCchHHHHHHHHHhh
Q 004425 680 QGMLDEAAKVRTTMND 695 (754)
Q Consensus 680 ~g~~~~a~~~~~~m~~ 695 (754)
.|++++|...+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999988888887643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.4e-09 Score=108.17 Aligned_cols=225 Identities=8% Similarity=0.016 Sum_probs=171.6
Q ss_pred HHhhhhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcccchHHHHHHHHHHHHhC--C---CC-chhHHHH
Q 004425 436 GFMEKIADDEEDVMVLFSQQRLAGM-EPD----PVTFSRLLSLSASQACLVRGRSLHAYSIKTG--Y---AA-DVIVGNA 504 (754)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~~-~~~~~~~ 504 (754)
.+.. .|++++|+..|++..+... .++ ..++..+...+...|+++.|...+.++.+.. . .+ ...+++.
T Consensus 110 ~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 110 YEFD--QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHH--TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHH--HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445 8899999999888775311 133 2467777888889999999999988887531 1 11 2456778
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 004425 505 LITMYAKCGSIDGAFQIFKGISD-----RD----IVSWNAMLSAYALHGLGKGALLLFEEMKR-----EGFAPDDISILG 570 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 570 (754)
+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..|++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 88999999999999999987643 22 24678899999999999999999999886 32 222457888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPI---LEHFACMVDLLGRAGR---LSEAMNLINSSPFSES-PLLWRTLVSVS 643 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~ 643 (754)
+...+.+.|++++|..++++..+...-..+ ...+..+...+...|+ +++|+.++++....|+ ...+..+...+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 999999999999999999999874322222 2356677778888888 9999999998755443 45667888999
Q ss_pred HhcCChHHHHHHHHHhhccC
Q 004425 644 KLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 644 ~~~g~~~~a~~~~~~~~~~~ 663 (754)
...|+.++|...+++++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-09 Score=105.52 Aligned_cols=205 Identities=10% Similarity=-0.024 Sum_probs=134.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD--RD----IVSWNAMLSAYALHGLGKGALLLFEEMKREGF-APD-DISIL 569 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 569 (754)
+...+-.+...+.+.|++++|...|+.+.+ |+ ...|..+..+|...|++++|+..|++.++... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555566667777777777777776643 22 34566666777777777777777777776321 112 12455
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 004425 570 GVLQACIY--------SGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLV 640 (754)
Q Consensus 570 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 640 (754)
.+..++.. .|++++|...|+++.+. .|+ ......+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55556666 67777777777776653 122 12221111111100000 11246778
Q ss_pred HHHHhcCChHHHHHHHHHhhccCCCC---cchHHHHHHHHHhc----------CCchHHHHHHHHHhhCCCccCCceeEE
Q 004425 641 SVSKLMANSKFSILASKRLLDLEPKD---AGSFILVSNMYAGQ----------GMLDEAAKVRTTMNDLRLSKEAGCSWI 707 (754)
Q Consensus 641 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~ 707 (754)
..+...|++++|+..++++++..|++ +..+..++.+|... |++++|...++++.+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 88999999999999999999999984 45899999999977 999999999998866332
Q ss_pred EECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHc
Q 004425 708 EIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMKLK 743 (754)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 743 (754)
.+|........+..+...+++.
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHHh
Confidence 3667778888888888777754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.2e-10 Score=125.61 Aligned_cols=163 Identities=13% Similarity=0.170 Sum_probs=135.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQ 573 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 573 (754)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|+..|++.++ +.|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 466788888888888888888888887753 3567888899999999999999999999988 56765 58888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 004425 574 ACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSK 650 (754)
Q Consensus 574 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 650 (754)
++...|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++. ...| +...|..++.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999998876 3444 578889999999999999999998865 4455 5888999999999999999
Q ss_pred HHHHHHHHhhccCCC
Q 004425 651 FSILASKRLLDLEPK 665 (754)
Q Consensus 651 ~a~~~~~~~~~~~p~ 665 (754)
+|.+.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999886554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=8.3e-10 Score=108.92 Aligned_cols=221 Identities=14% Similarity=0.111 Sum_probs=156.0
Q ss_pred hcccchHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----------C-ChhHHHHH
Q 004425 475 ASQACLVRGRSLHAYSIKT-------GYAADVIVGNALITMYAKCGSIDGAFQIFKGISD----------R-DIVSWNAM 536 (754)
Q Consensus 475 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l 536 (754)
...|+++.|..++++..+. ..+....++..+...|...|++++|...|++..+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776642 2233567788899999999999999999987642 1 23578889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-----CCCC-CccH
Q 004425 537 LSAYALHGLGKGALLLFEEMKRE------GFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIY-----GLRP-ILEH 603 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 603 (754)
...|...|++++|+..|++..+. .-.|+ ..++..+...+...|++++|..+++++.+.. +..| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998864 11233 3478888889999999999999999987731 1122 2457
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----------CCCC-CHHHHHHHHHHHHhcCC------hHHHHHHHHHhhccCCCC
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS----------PFSE-SPLLWRTLVSVSKLMAN------SKFSILASKRLLDLEPKD 666 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~----------~~~p-~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~ 666 (754)
+..++.+|.+.|++++|.++++++ ...+ ....|..+.......+. +..+...++.+....|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999998764 1122 23344444444444333 333333444444445666
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 667 AGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+..+..++.+|...|++++|...+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77899999999999999999999998754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-09 Score=107.79 Aligned_cols=187 Identities=12% Similarity=-0.006 Sum_probs=126.3
Q ss_pred HHHHhcCCHHHHHHHHhccCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHH
Q 004425 507 TMYAKCGSIDGAFQIFKGISD-----RD----IVSWNAMLSAYALHGLGKGALLLFEEMKREGFA-PD----DISILGVL 572 (754)
Q Consensus 507 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll 572 (754)
..|...|++++|...|++..+ .+ ..+|+.+..+|...|++++|+..|++.++.... .+ ..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666777766666665432 11 346777888888888888888888877752111 01 23677888
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CH-----HHHHH
Q 004425 573 QACIYS-GLSEGGICLFNEIEQIYGLRPI----LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE---SP-----LLWRT 638 (754)
Q Consensus 573 ~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~-----~~~~~ 638 (754)
..|... |++++|+..|++..+...-..+ ..++..++.+|.+.|++++|++.+++. ...| +. ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888886 9999999999988763211111 346778899999999999999999865 1222 21 25677
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCCcch-----HHHHHHHHH--hcCCchHHHHHHHHH
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKDAGS-----FILVSNMYA--GQGMLDEAAKVRTTM 693 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m 693 (754)
+..++...|++++|+..++++++++|+.... +..++..|. ..+++++|...++++
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 8888889999999999999999999986543 344566664 457788888888643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-10 Score=101.77 Aligned_cols=139 Identities=7% Similarity=-0.089 Sum_probs=93.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 618 (754)
+...|++++|+..+++... ..|+. ..+..+...|...|++++|++.|++..+. -+-+...|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 3344556666666665544 33332 24445556666666666666666666541 1223455666666666666666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHhhccCCCCcchHHHHHHHHHhcCC
Q 004425 619 EAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILA-SKRLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 619 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
+|+..+++. ...| ++.+|..+...+...|+.++|... ++++++++|+++.+|..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 666666544 3345 588899999999999998776655 699999999999999999999998886
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.5e-09 Score=104.95 Aligned_cols=171 Identities=6% Similarity=-0.083 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-----
Q 004425 500 IVGNALITMYAKCGSIDGAFQIFKGISD-----RD----IVSWNAMLSAYALH-GLGKGALLLFEEMKREGFAPD----- 564 (754)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~----- 564 (754)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++.++. .|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChH
Confidence 3455555566666666666665554432 11 23677788888886 9999999999888762 221
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-Cc-----cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH--
Q 004425 565 --DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-IL-----EHFACMVDLLGRAGRLSEAMNLINSS-PFSESP-- 633 (754)
Q Consensus 565 --~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-- 633 (754)
..++..+...+...|++++|+.+|++..+. .... .. ..|..++.++...|++++|+..+++. ...|+.
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 246778888899999999999999988772 2221 11 14677888888999999999999875 334431
Q ss_pred ----HHHHHHHHHHH--hcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 634 ----LLWRTLVSVSK--LMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 634 ----~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
..+..++.++. ..+++++|+..++++..++|.+...+..+
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 13444556664 34678889999988888888754444433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8.6e-09 Score=97.72 Aligned_cols=180 Identities=12% Similarity=-0.003 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----HHH
Q 004425 500 IVGNALITMYAKCGSIDGAFQIFKGISD--RD----IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI----SIL 569 (754)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~ 569 (754)
..+..+...+.+.|++++|...|+.+.+ |+ ...+..+..+|.+.|++++|+..|+++++. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3445556667777888888888877643 32 235666777777788888888888887773 34432 333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 004425 570 GVLQACIY------------------SGLSEGGICLFNEIEQIYGLRPIL-EHFACMVDLLGRAGRLSEAMNLINSSPFS 630 (754)
Q Consensus 570 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (754)
.+..++.. .|++++|...|+++.+ ..|+. .......... ......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~----~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLV----FLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHH----HHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHH----HHHHHH---------
Confidence 34444433 3445555555555543 12221 1111110000 000000
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004425 631 ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA---GSFILVSNMYAGQGMLDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 699 (754)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01113456678889999999999999999999976 57999999999999999999999998876654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-07 Score=97.58 Aligned_cols=158 Identities=12% Similarity=0.017 Sum_probs=72.5
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCc-hhHHH----
Q 004425 433 ILSGFMEKIADDEEDVMVLFSQQRLAGME--P--DPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAAD-VIVGN---- 503 (754)
Q Consensus 433 li~~~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~---- 503 (754)
+...+.. .|++++|...+++....... + ...++..+...+...|++++|...++...+..-.++ ...+.
T Consensus 141 la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 218 (373)
T 1hz4_A 141 RAQLLWA--WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 218 (373)
T ss_dssp HHHHHHH--TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHH--hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH
Confidence 3344444 55555555555555442111 1 113344455555556666666666665554311111 01111
Q ss_pred -HHHHHHHhcCCHHHHHHHHhccCCCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCHH-HHHH
Q 004425 504 -ALITMYAKCGSIDGAFQIFKGISDRDI-------VSWNAMLSAYALHGLGKGALLLFEEMKRE----GFAPDDI-SILG 570 (754)
Q Consensus 504 -~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-t~~~ 570 (754)
..+..+...|++++|...++....++. ..+..+...+...|++++|...+++.... |..++.. .+..
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 122335566666666666665543211 13344555555666666666666555431 1111111 3333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004425 571 VLQACIYSGLSEGGICLFNEIE 592 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~ 592 (754)
+..++...|+.++|...+++..
T Consensus 299 la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 4444555555555555555543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.2e-09 Score=117.46 Aligned_cols=148 Identities=10% Similarity=0.035 Sum_probs=71.2
Q ss_pred hcccchHHHHHHHHHHHH-------hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcC
Q 004425 475 ASQACLVRGRSLHAYSIK-------TGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHG 544 (754)
Q Consensus 475 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 544 (754)
...|++++|.+.++.+.+ ...+.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 455556666666655551 01122344445555555555555555555554432 23344555555555555
Q ss_pred ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHH
Q 004425 545 LGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 545 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
++++|+..|++.++ +.|+. ..+..+..++...|++++ ++.|+++.+. -+.+...|..+..+|.+.|++++|++.
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555 33432 344455555555555555 5555555431 111233444444555555555555555
Q ss_pred HHhC
Q 004425 624 INSS 627 (754)
Q Consensus 624 ~~~~ 627 (754)
++++
T Consensus 557 ~~~a 560 (681)
T 2pzi_A 557 LDEV 560 (681)
T ss_dssp HHTS
T ss_pred HHhh
Confidence 5443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.4e-09 Score=101.86 Aligned_cols=203 Identities=11% Similarity=-0.042 Sum_probs=146.4
Q ss_pred CCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhccCC--C---C-hhH
Q 004425 462 PDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAAD---VIVGNALITMYAKCGSIDGAFQIFKGISD--R---D-IVS 532 (754)
Q Consensus 462 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~-~~~ 532 (754)
.+...+......+...|++++|...++.+.+.. +.+ ...+..+..+|.+.|++++|...|+...+ | . ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 344667777888899999999999999999864 223 66788889999999999999999998853 3 2 346
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccH
Q 004425 533 WNAMLSAYAL--------HGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEH 603 (754)
Q Consensus 533 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 603 (754)
+..+..++.. .|++++|+..|++.++ ..|+.. ....+ ..+..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888988 9999999999999998 446543 22111 111111110 0112
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc----------CChHHHHHHHHHhhccCCCCcc
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS----PFSE-SPLLWRTLVSVSKLM----------ANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
+..++.+|.+.|++++|+..++++ |..+ ....+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 456777888888888888888765 3222 255677777777755 8899999999999999999853
Q ss_pred ---hHHHHHHHHHhcCCchHH
Q 004425 669 ---SFILVSNMYAGQGMLDEA 686 (754)
Q Consensus 669 ---~~~~l~~~~~~~g~~~~a 686 (754)
++..+..++...|+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 455666666666665543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=7e-09 Score=88.91 Aligned_cols=129 Identities=18% Similarity=0.210 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLL 611 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 611 (754)
.|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|..+++++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 45556666666666666666666666532 113344555555555666666666666555441
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 004425 612 GRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRT 691 (754)
Q Consensus 612 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 691 (754)
.+.+...|..+...+...|++++|...++++++..|++...+..++.+|...|++++|...++
T Consensus 65 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 65 -----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 122455666677777777788888888888888888777788888888888888888888887
Q ss_pred HHhh
Q 004425 692 TMND 695 (754)
Q Consensus 692 ~m~~ 695 (754)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-08 Score=99.51 Aligned_cols=200 Identities=11% Similarity=0.008 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-------C-
Q 004425 464 PVTFSRLLSLSASQACLVRGRSLHAYSIKT------GY-AADVIVGNALITMYAKCGSIDGAFQIFKGISD-------R- 528 (754)
Q Consensus 464 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~- 528 (754)
..++..+...+...|++++|...++++.+. +- +....++..+...|...|++++|...|++..+ +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 356677777788888888888888877754 22 22456677888888888888888888887642 1
Q ss_pred ---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---
Q 004425 529 ---DIVSWNAMLSAYALHGLGKGALLLFEEMKRE------GFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIY--- 595 (754)
Q Consensus 529 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--- 595 (754)
...+|..+...|...|++++|+..+++..+. +-.|+. .++..+...+...|++++|..+++++.+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2356788889999999999999999998874 113433 478888899999999999999999887631
Q ss_pred ---CCCCC-ccHHHHHHHHHhhcC------CHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 596 ---GLRPI-LEHFACMVDLLGRAG------RLSEAMNLINSSPF-SE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 596 ---~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
...+. ...+..+...+...+ .+.++...++.... .| ...++..+...+...|++++|...++++++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 12233 234444444444333 34555555555532 23 46678889999999999999999999998753
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.7e-09 Score=103.03 Aligned_cols=172 Identities=10% Similarity=-0.039 Sum_probs=131.7
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004425 517 GAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIY 595 (754)
Q Consensus 517 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 595 (754)
.....++.....+...+..+...+...|++++|+..|++.++ ..|+. ..+..+...+...|++++|...++++..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 333444444434445666777788888899999999988888 55654 5777788888888999999998888744
Q ss_pred CCCCCccHHH-HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC--cchH
Q 004425 596 GLRPILEHFA-CMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD--AGSF 670 (754)
Q Consensus 596 ~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~ 670 (754)
..|+..... .....+.+.|+.++|.+.+++. ...| +...+..+...+...|+.++|...++++++.+|++ ..++
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 345443322 2333356677778888877654 3334 68899999999999999999999999999999997 8899
Q ss_pred HHHHHHHHhcCCchHHHHHHHHH
Q 004425 671 ILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
..|+.+|...|+.++|...+++.
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHH
Confidence 99999999999999999988764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-07 Score=90.01 Aligned_cols=175 Identities=9% Similarity=-0.040 Sum_probs=112.7
Q ss_pred HHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 518 AFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 518 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
|...|++... ++..++..+..++...|++++|++++++.+..|..++. ..+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555665532 34455556677777778888888888777664432233 4666677777788888888888887755
Q ss_pred HhCCCC-----CccHHHHHHHH--Hhh--cCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcc-
Q 004425 594 IYGLRP-----ILEHFACMVDL--LGR--AGRLSEAMNLINSSP-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDL- 662 (754)
Q Consensus 594 ~~~~~p-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 662 (754)
..| +..+...++.+ ... .+++.+|..+|+++. ..|+...-..|++++...|++++|+..++.+.++
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 244 23444444444 222 337788888887762 2344233334444667778888888888877765
Q ss_pred ---------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 663 ---------EPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 663 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
+|+|+.++..++.+....|+ +|.+++++++...
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 47778888777777777776 7778888776643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-09 Score=96.28 Aligned_cols=121 Identities=15% Similarity=0.052 Sum_probs=100.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 004425 572 LQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMAN 648 (754)
Q Consensus 572 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 648 (754)
...+...|++++|+..++... ...|+ ...+..+..+|.+.|++++|++.+++. ...| ++.+|..+..++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344556788999999988873 34443 345668999999999999999999876 4445 79999999999999999
Q ss_pred hHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHH-HHHHhh
Q 004425 649 SKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKV-RTTMND 695 (754)
Q Consensus 649 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 695 (754)
+++|+..++++++++|+++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987765 465544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.7e-08 Score=84.30 Aligned_cols=130 Identities=17% Similarity=0.193 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004425 501 VGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIY 577 (754)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 577 (754)
.+..+...|...|++++|..+|+++.+ .+...|..+...+...|++++|..+++++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567788999999999999999998743 467788899999999999999999999999853 2245577778888888
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASK 657 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 657 (754)
.|++++|..+++++.+. .+. +...|..+...+...|+.++|...++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~--------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPR--------------------------------SAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTT--------------------------------CHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCC--------------------------------ChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 88999998888888662 111 23344455555555566666666666
Q ss_pred HhhccCCC
Q 004425 658 RLLDLEPK 665 (754)
Q Consensus 658 ~~~~~~p~ 665 (754)
++++.+|+
T Consensus 128 ~~~~~~~~ 135 (136)
T 2fo7_A 128 KALELDPR 135 (136)
T ss_dssp HHHHHSTT
T ss_pred HHHccCCC
Confidence 66655554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.1e-09 Score=94.38 Aligned_cols=155 Identities=10% Similarity=-0.030 Sum_probs=97.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004425 503 NALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSG 579 (754)
Q Consensus 503 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 579 (754)
..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++... ..|+.. +..+...+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~---- 82 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNS-YKSLIAKL---- 82 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHH-HHHHHHHH----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChH-HHHHHHHH----
Confidence 3444555566666666666665543 2344555555666666666666666655544 223221 11111100
Q ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 004425 580 LSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASK 657 (754)
Q Consensus 580 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 657 (754)
. +...+...+|++.+++. ...| ++..|..+..++...|++++|...++
T Consensus 83 -----------------------------~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 83 -----------------------------E-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp -----------------------------H-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------------------H-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 0 01111112244444432 2234 68889999999999999999999999
Q ss_pred HhhccCCCC--cchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 658 RLLDLEPKD--AGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 658 ~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 133 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 999999975 5589999999999999999999988653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.91 E-value=8.5e-09 Score=89.93 Aligned_cols=102 Identities=8% Similarity=-0.051 Sum_probs=86.6
Q ss_pred CCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 596 GLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 596 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
.+.|+ ...+..+...+.+.|++++|++.|++. ...| ++..|..+..++...|++++|+..++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34443 345667777888888888888888765 3344 79999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 673 VSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
++.+|...|++++|...+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999886643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.1e-08 Score=90.68 Aligned_cols=172 Identities=10% Similarity=-0.054 Sum_probs=132.8
Q ss_pred HHHHHhccC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 004425 518 AFQIFKGIS-DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSG----LSEGGICLFNEIE 592 (754)
Q Consensus 518 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 592 (754)
|.+.|++.. ..+..++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444432 2466677777777878888888888888888754 45566667666766 6 7888999988886
Q ss_pred HHhCCCCCccHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCChHHHHHHHHHhh
Q 004425 593 QIYGLRPILEHFACMVDLLGR----AGRLSEAMNLINSSPFSES----PLLWRTLVSVSKL----MANSKFSILASKRLL 660 (754)
Q Consensus 593 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 660 (754)
+ .| +...+..|..+|.. .+++++|++++++.....+ +..+..|...+.. .++.++|...++++.
T Consensus 81 ~-~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E-AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H-TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H-CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6 23 45667778888877 8899999999987633333 7888899998888 789999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhc-C-----CchHHHHHHHHHhhCCC
Q 004425 661 DLEPKDAGSFILVSNMYAGQ-G-----MLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 661 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 698 (754)
++ |.++.++..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 67788999999999864 3 89999999998877654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-07 Score=91.88 Aligned_cols=179 Identities=13% Similarity=0.080 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004425 483 GRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR-----DIVSWNAMLSAYALHGLGKGALLLFEEMK 557 (754)
Q Consensus 483 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 557 (754)
+...+++....+ .++......+..+|...|++++|++++.+.... +...+-.++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555544 344555567778888889999999998877332 34567778888999999999999999998
Q ss_pred HcCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 004425 558 REGFAP-----DDISILGVLQA--CIYSG--LSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSP 628 (754)
Q Consensus 558 ~~g~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (754)
+ ..| +..+...+..+ ....| ++++|..+|+++.+ -.|+......+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 567 35566666655 33334 88999999999855 23442233344448889999999999987541
Q ss_pred C-----------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch
Q 004425 629 F-----------SE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 629 ~-----------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
. .| |+.+...++......|+ +|.+.++++.+.+|+++..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 1 14 57777666666666776 8899999999999998754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.87 E-value=3e-08 Score=92.53 Aligned_cols=127 Identities=10% Similarity=0.046 Sum_probs=98.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh
Q 004425 535 AMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR 613 (754)
Q Consensus 535 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 613 (754)
.+..+|...|++++|+..|++.++ +.|+. ..+..+..++...|++++|...|+++.+. -+.+...+..+..+|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 388899999999999999999998 55754 58888999999999999999999999772 23346788888888876
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 614 AGR--LSEAMNLINSSPFSESP--LLWRTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 614 ~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
.|+ .+++...++... .|++ ..|..+..++...|++++|+..++++++++|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445666666653 3443 344555666777899999999999999999983
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.1e-08 Score=109.49 Aligned_cols=167 Identities=8% Similarity=-0.071 Sum_probs=112.4
Q ss_pred HhcCCHHHHHHHHhccC-----------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 004425 510 AKCGSIDGAFQIFKGIS-----------DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIY 577 (754)
Q Consensus 510 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 577 (754)
...|++++|.+.|++.. ..+...|..+..+|...|++++|+..|++.++ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 55677777777776654 23445677777777777777777777777776 34543 466667777777
Q ss_pred cCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 004425 578 SGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSIL 654 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 654 (754)
.|++++|...|+++.+ +.| +...+..+..+|.+.|++++ ++.+++. ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777755 233 35566777777777777777 7777654 2233 56677777777777777777777
Q ss_pred HHHHhhccCCCCcchHHHHHHHHHhcCC
Q 004425 655 ASKRLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 655 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
.++++++++|++..++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777777777777777765444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-08 Score=110.34 Aligned_cols=159 Identities=9% Similarity=0.055 Sum_probs=125.1
Q ss_pred cCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004425 512 CGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICL 587 (754)
Q Consensus 512 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 587 (754)
.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999998864 3567899999999999999999999999998 5565 46888899999999999999999
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHhhcc
Q 004425 588 FNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLM---ANSKFSILASKRLLDL 662 (754)
Q Consensus 588 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 662 (754)
+++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999873 2334678899999999999999999999875 3334 688899999999999 9999999999999999
Q ss_pred CCCCcchHHHHH
Q 004425 663 EPKDAGSFILVS 674 (754)
Q Consensus 663 ~p~~~~~~~~l~ 674 (754)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999998888877
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-08 Score=84.66 Aligned_cols=114 Identities=11% Similarity=-0.015 Sum_probs=71.8
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 004425 561 FAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWR 637 (754)
Q Consensus 561 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 637 (754)
+.|+. ..+......+.+.|++++|+..|++..+. -+.+...|..+..+|.+.|++++|++.+++. ...| ++..|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 24555566666666666666666666541 1223445555666666666666666665543 2233 567777
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHH
Q 004425 638 TLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNM 676 (754)
Q Consensus 638 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 676 (754)
.+..++...|++++|+..++++++++|++..++..|+++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777778888888888888888888888877777777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.82 E-value=6.8e-06 Score=87.21 Aligned_cols=204 Identities=8% Similarity=-0.055 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHh
Q 004425 445 EEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGA-FQIFK 523 (754)
Q Consensus 445 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~ 523 (754)
.+.+..+|++.+... +-+...|...+.-+.+.|+.+.|..+++++.+. +.+...+.. |+...+.++. ..+.+
T Consensus 195 ~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHH
Confidence 345677888887753 344567777777788889999999999999988 444443332 2222111111 11221
Q ss_pred ccC--C-------C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHH
Q 004425 524 GIS--D-------R---DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQA-CIYSGLSEGGICLFNE 590 (754)
Q Consensus 524 ~~~--~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~ 590 (754)
... . + ....|-..+..+.+.++.+.|..+|++. .. ...+...|...... +...++.+.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 110 0 0 1245666777776778899999999988 31 11233344322211 1123468999999999
Q ss_pred HHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 591 IEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 591 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
..+.++ -+...+...++...+.|+.+.|..+++++. .....|...+..-..+|+.+.+..++++..+
T Consensus 346 al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888532 234456678888888999999999999873 3678899999888889999999888888774
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-07 Score=94.71 Aligned_cols=220 Identities=11% Similarity=0.007 Sum_probs=152.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567888888888776531 111 0 11146666666666554 4567788888888888
Q ss_pred HhccCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 004425 522 FKGISD-----RD----IVSWNAMLSAYALHGLGKGALLLFEEMKREGF---APD--DISILGVLQACIYSGLSEGGICL 587 (754)
Q Consensus 522 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~ 587 (754)
|.+..+ .+ ..+|+.+...|...|++++|+..|++.++.-. .|. ..++..+...|.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 876632 12 34788888999999999999999998775311 122 2467778888888 999999999
Q ss_pred HHHHHHHhCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHH
Q 004425 588 FNEIEQIYGLRPI----LEHFACMVDLLGRAGRLSEAMNLINSS----PFSES----PLLWRTLVSVSKLMANSKFSILA 655 (754)
Q Consensus 588 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~ 655 (754)
|++..+...-..+ ..++..+..+|.+.|++++|++.+++. +..++ ...+..++.++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988763211111 357888999999999999999999865 11122 23566677777888999999999
Q ss_pred HHHhhccCCCCcch-----HHHHHHHHHhcCCchHHHHH
Q 004425 656 SKRLLDLEPKDAGS-----FILVSNMYAGQGMLDEAAKV 689 (754)
Q Consensus 656 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 689 (754)
+++++ ++|+.... ...++..| ..|+.+++.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 99975433 34445545 56776666553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9e-09 Score=89.97 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=81.4
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
...+..+...+.+.|++++|++.|++. ...| ++..|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 345666777777888888888877754 2234 78899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhC
Q 004425 679 GQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~~~ 696 (754)
..|++++|...+++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.1e-07 Score=87.40 Aligned_cols=209 Identities=13% Similarity=0.098 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhccCC---CChhHHHHHHHHH----HHc---CChHHH
Q 004425 482 RGRSLHAYSIKTGYAADVIVGNALITMYAKCG--SIDGAFQIFKGISD---RDIVSWNAMLSAY----ALH---GLGKGA 549 (754)
Q Consensus 482 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A 549 (754)
+|....+.++..+ +-+..+|+.--..+...| ++++++..++.+.. .+..+|+.-...+ ... ++++++
T Consensus 51 ~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 51 RALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 4444444444433 222333444444455555 66666666665542 2334555433333 334 567777
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCC------HHHH
Q 004425 550 LLLFEEMKREGFAP-DDISILGVLQACIYSGLSE--GGICLFNEIEQIYGLRPILEHFACMVDLLGRAGR------LSEA 620 (754)
Q Consensus 550 ~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A 620 (754)
+.+++++++. .| |...|..-...+.+.|.++ +++++++++.+. -.-+-..|+.-..++.+.|+ ++++
T Consensus 130 L~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 130 FDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 7777777763 34 4456666666667777766 777777777662 22334455555555555555 7777
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHHHhhccC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 621 MNLINSS-PFSE-SPLLWRTLVSVSKLMANS-KFSILASKRLLDLE---PKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 621 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
+++++++ ...| |...|+.+...+...|+. +.....++++++++ |.++.++..++.+|.+.|+.++|.++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7777654 2334 788888888887777764 33556777777766 7777888888888888888888888888876
Q ss_pred h
Q 004425 695 D 695 (754)
Q Consensus 695 ~ 695 (754)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.9e-08 Score=106.36 Aligned_cols=145 Identities=12% Similarity=-0.015 Sum_probs=74.1
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 004425 478 ACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFE 554 (754)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 554 (754)
|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566666666655432 23455566666666666666666666665533 234456666666666666666666666
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 004425 555 EMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA---GRLSEAMNLINSS 627 (754)
Q Consensus 555 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 627 (754)
+..+ ..|+ ...+..+..++...|++++|.+.|++..+. .+.+...+..+..++... |+.++|.+.+++.
T Consensus 82 ~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 6665 3343 345556666666666666666666666542 122344555666666666 6666666666543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.79 E-value=6e-08 Score=90.50 Aligned_cols=157 Identities=11% Similarity=-0.043 Sum_probs=118.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHH----------------HHHHHHhcCCHHHHHHHHHHHHHHhC
Q 004425 534 NAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILG----------------VLQACIYSGLSEGGICLFNEIEQIYG 596 (754)
Q Consensus 534 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~~~ 596 (754)
-.....+...|++++|+..|++.++ ..|+.. .+.. +..++...|++++|+..|++..+.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 3445566778888888888888887 456543 5555 888999999999999999999772
Q ss_pred CCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--hHHHHHHHHHhhccCCCCcchHHH
Q 004425 597 LRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMAN--SKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 597 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
-+-+...+..+..+|...|++++|++.+++. ...| ++..|..+..++...|+ .+.+...++++....|. ...+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHH
Confidence 2335678999999999999999999999876 3445 68899999988866653 45566667776554443 235677
Q ss_pred HHHHHHhcCCchHHHHHHHHHhh
Q 004425 673 VSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++.++...|++++|...+++..+
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 88899999999999999998755
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.3e-08 Score=81.75 Aligned_cols=99 Identities=10% Similarity=0.073 Sum_probs=88.9
Q ss_pred CCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 597 LRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 597 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
+.|+ ...+...+..|.+.|++++|++.|++. ...| ++..|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4554 356778899999999999999999875 3344 799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHhh
Q 004425 674 SNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 674 ~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
|.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-07 Score=88.20 Aligned_cols=129 Identities=9% Similarity=-0.111 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDL 610 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 610 (754)
..+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...|++..+. .+.+...+..++.+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 34455666677777777777777765 3456667777777777777777777777777652 12234455566666
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 611 LGRAGRLSEAMNLINSS-PFSE-----------------SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
|...|++++|++.+++. ...| ....|..+..++...|++++|...++++++++|+
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 66666666666666543 1111 1245555666666666666666666666666655
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.74 E-value=9.3e-07 Score=87.47 Aligned_cols=158 Identities=9% Similarity=-0.056 Sum_probs=115.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCC-CC----ccHHH
Q 004425 536 MLSAYALHGLGKGALLLFEEMKREGF-APDDI----SILGVLQACIYSGLSEGGICLFNEIEQIYGLR-PI----LEHFA 605 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~----~~~~~ 605 (754)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..|+++.. .... ++ ...++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~-~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-TCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-HhcccccHHHHHHHHH
Confidence 46677788888888888888876321 12211 223455566677788888888888876 2222 22 22578
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-------C-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC------cchH
Q 004425 606 CMVDLLGRAGRLSEAMNLINSSP-------F-SE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD------AGSF 670 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~~-------~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 670 (754)
.++.+|...|++++|++.++++- . .+ ...++..++..|...|++++|...+++++++.++. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88888888888888888887541 1 11 24477889999999999999999999999876543 5689
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHh
Q 004425 671 ILVSNMYAGQGM-LDEAAKVRTTMN 694 (754)
Q Consensus 671 ~~l~~~~~~~g~-~~~a~~~~~~m~ 694 (754)
..+|.+|...|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 599999888774
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-07 Score=88.30 Aligned_cols=185 Identities=9% Similarity=-0.060 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh----hHHHH
Q 004425 464 PVTFSRLLSLSASQACLVRGRSLHAYSIKTGYA-A-DVIVGNALITMYAKCGSIDGAFQIFKGISD--RDI----VSWNA 535 (754)
Q Consensus 464 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~ 535 (754)
...+..+...+...|++++|...++.+.+..-. + ....+..+..+|.+.|++++|...|+++.+ |+. .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345556677888999999999999999986421 1 235677889999999999999999999853 332 24555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 004425 536 MLSAYAL------------------HGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYG 596 (754)
Q Consensus 536 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 596 (754)
+..++.. .|++++|+..|+++++ ..|+.. ....... ...+...+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----------l~~~~~~~~~--- 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----------LVFLKDRLAK--- 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----------HHHHHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----------HHHHHHHHHH---
Confidence 6666654 5789999999999998 557654 2221111 0011111111
Q ss_pred CCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch
Q 004425 597 LRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 597 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
....++..|.+.|++++|+..++++ ...|+ +..+..+..++...|+.++|+..++++....|++...
T Consensus 149 ------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 149 ------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 1235678889999999999999876 22232 3578889999999999999999999999999986554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=85.57 Aligned_cols=155 Identities=12% Similarity=-0.031 Sum_probs=106.3
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHH-HHH
Q 004425 466 TFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--RDIVSWNAMLSA-YAL 542 (754)
Q Consensus 466 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~ 542 (754)
.+......+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+.... |+...+..+... +..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 45566677889999999999999987754 44678889999999999999999999999865 433333222211 222
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHhhcCCHH
Q 004425 543 HGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI---LEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~ 618 (754)
.++..+|+..+++.++ ..|+ ...+..+..++...|++++|...|+++.+ ..|+ ...+..++.++...|+.+
T Consensus 87 ~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 87 QAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred hcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHhCCCC
Confidence 2333456777888777 4564 45677777777888888888888877754 3333 335556666666666666
Q ss_pred HHHHHHHh
Q 004425 619 EAMNLINS 626 (754)
Q Consensus 619 ~A~~~~~~ 626 (754)
+|...+++
T Consensus 162 ~A~~~y~~ 169 (176)
T 2r5s_A 162 AIASKYRR 169 (176)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 66655543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.72 E-value=8.9e-08 Score=83.01 Aligned_cols=95 Identities=11% Similarity=0.018 Sum_probs=79.0
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
..+..+...+.+.|++++|++.|++. ...| ++..|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34455666677777777777777654 2234 788899999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHhhC
Q 004425 680 QGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 680 ~g~~~~a~~~~~~m~~~ 696 (754)
.|++++|...+++..+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999987653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-08 Score=97.76 Aligned_cols=190 Identities=8% Similarity=-0.042 Sum_probs=132.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQ 573 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 573 (754)
+...+..+...+.+.|++++|...|+...+ .+...|..+..+|.+.|++++|+..+++.++ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 345566777788888888888888887642 3667788888888999999999999998887 55654 57788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004425 574 ACIYSGLSEGGICLFNEIEQIYGLRPIL-EHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFS 652 (754)
Q Consensus 574 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 652 (754)
++...|++++|...|++..+. .|+. ..+...+....+..+..+... .......++..+...+... ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 899999999999999887662 1211 111112222222111111111 2222334455555555433 36899999
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHhc-CCchHHHHHHHHHhh
Q 004425 653 ILASKRLLDLEPKDAGSFILVSNMYAGQ-GMLDEAAKVRTTMND 695 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 695 (754)
...++++++++|++......+..++.+. +++++|.++|+++.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999888888888888877 789999999998865
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.7e-07 Score=91.38 Aligned_cols=163 Identities=7% Similarity=-0.077 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----cc
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-----ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LE 602 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 602 (754)
.+...+..+...|++++|++.+++.++.....+. ..+..+...+...|++++|...+++..+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777888888888888877764322111 12334455567778888888888887642111111 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC------Cc
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-------PFSE--SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK------DA 667 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 667 (754)
.|+.++.+|...|++++|++.+++. +..+ ...++..++..|...|++++|...+++++++.++ -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6778888888888888888888654 2111 1258888999999999999999999999887543 15
Q ss_pred chHHHHHHHHHhcCCchHH-HHHHHHHh
Q 004425 668 GSFILVSNMYAGQGMLDEA-AKVRTTMN 694 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 694 (754)
.+|..+|.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6789999999999999999 77677654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-07 Score=92.42 Aligned_cols=133 Identities=11% Similarity=-0.021 Sum_probs=111.5
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 004425 563 PDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSESPLLWRTLV 640 (754)
Q Consensus 563 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 640 (754)
|+. ..+..+...+...|++++|...|+++.+. -+-+...+..++.+|.+.|++++|.+.++++ ...|+...+....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 444 56778888899999999999999999772 2334678889999999999999999999987 3456655444444
Q ss_pred H-HHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 641 S-VSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 641 ~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
. .+...++.+.|...++++++.+|+++..+..++.+|...|++++|...++++....
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 3 36677889999999999999999999999999999999999999999999886643
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.7e-06 Score=81.60 Aligned_cols=229 Identities=7% Similarity=-0.034 Sum_probs=172.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccc--chHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc--
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDP-VTFSRLLSLSASQA--CLVRGRSLHAYSIKTGYAADVIVGNALITMY----AKC-- 512 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~-- 512 (754)
....++|+.++..++.. .|+. ..|+.--..+...+ ++++++..++.+...+ +-+..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 44456788888888765 5655 34566566666677 8888888888888765 33445555544444 445
Q ss_pred -CCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 004425 513 -GSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGK--GALLLFEEMKREGFAPDDISILGVLQACIYSGL------ 580 (754)
Q Consensus 513 -g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 580 (754)
+++++++.+++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++++.... |...|+.-...+.+.|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 788999999998854 57788888888888889888 999999999985433 55678777777777776
Q ss_pred HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCChHHHHH
Q 004425 581 SEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSE-AMNLINSSP-F----SESPLLWRTLVSVSKLMANSKFSIL 654 (754)
Q Consensus 581 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~g~~~~a~~ 654 (754)
+++++++++.+... .+-+...|+-+..++.+.|+..+ +.++.+++- . ..++..+..++..+...|+.++|++
T Consensus 202 ~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 89999999998772 34456678888888888888544 556777651 1 3478899999999999999999999
Q ss_pred HHHHhhc-cCCCCcchHHHHHHH
Q 004425 655 ASKRLLD-LEPKDAGSFILVSNM 676 (754)
Q Consensus 655 ~~~~~~~-~~p~~~~~~~~l~~~ 676 (754)
+++++.+ .+|.....|...+..
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHhccChHHHHHHHHHHhh
Confidence 9999997 899988888766543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=5.1e-07 Score=84.49 Aligned_cols=128 Identities=11% Similarity=-0.020 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 004425 501 VGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSG 579 (754)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 579 (754)
.+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++.++. .|+ ...+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence 34556677788888888888888887778888888888888888888888888888874 343 457777888888888
Q ss_pred CHHHHHHHHHHHHHHhCCCCCc----------------cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 004425 580 LSEGGICLFNEIEQIYGLRPIL----------------EHFACMVDLLGRAGRLSEAMNLINSS-PFSES 632 (754)
Q Consensus 580 ~~~~a~~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 632 (754)
++++|...|+++.+. .+.+. ..+..++.+|.+.|++++|.+.+++. ...|+
T Consensus 86 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp CHHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 888888888888762 22222 56778888888888888888888764 44454
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-07 Score=82.49 Aligned_cols=126 Identities=6% Similarity=-0.005 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 004425 568 ILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PF-SESPLLWRTLVSVSKL 645 (754)
Q Consensus 568 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 645 (754)
+..+...+...|++++|...|++..+. .+.+...+..++.++...|++++|++.+++. .. +.+...|..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344444455555555555555555441 1223444555555556666666666655543 12 2357788889999999
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHH--HHHhcCCchHHHHHHHHHhh
Q 004425 646 MANSKFSILASKRLLDLEPKDAGSFILVSN--MYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 695 (754)
.|++++|...++++++++|++...+..++. .+...|++++|...+++..+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999998888855444 48889999999999887653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-07 Score=92.34 Aligned_cols=197 Identities=9% Similarity=-0.087 Sum_probs=151.5
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004425 476 SQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEE 555 (754)
Q Consensus 476 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 555 (754)
..|++++|.+++++..+..- .. .+...+++++|...|+. ....|...|++++|+..|++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 46788899999998876421 11 11115788999888765 36778899999999999998
Q ss_pred HHHcCC---CC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCC--C--CccHHHHHHHHHhhcCCHHHHHHHHHh
Q 004425 556 MKREGF---AP-D-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLR--P--ILEHFACMVDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 556 m~~~g~---~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (754)
..+... .+ . ..+|..+...|...|++++|+..|++..+.+.-. + ...++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 875321 11 1 2378888899999999999999999987632111 1 13578889999988 999999999976
Q ss_pred C----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc------chHHHHHHHHHhcCCchHHHHHHHH
Q 004425 627 S----PFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA------GSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 627 ~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
. +...+ ..++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 11111 56788899999999999999999999999877643 3677888899999999999999998
Q ss_pred Hh
Q 004425 693 MN 694 (754)
Q Consensus 693 m~ 694 (754)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 75
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.65 E-value=3.5e-07 Score=76.77 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-P-FSESPLLWRTLVSVSK 644 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 644 (754)
.+..+...+...|++++|..+++++... .+.+...+..++.++.+.|++++|..+++++ . .+.+...|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4444555555555555555555555442 1223444555566666666666666666544 1 2236778888888999
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcC
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQG 681 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 681 (754)
..|++++|...++++++.+|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999988887654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=2.7e-07 Score=78.25 Aligned_cols=116 Identities=7% Similarity=-0.021 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSK 644 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 644 (754)
.+..+...+...|++++|...|++.... .+.+...+..++.++...|++++|.+.+++. ...| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4444555555555666666665555442 1223445555666666666666666666543 1223 5778888889999
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCch
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLD 684 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 684 (754)
..|++++|...++++++++|+++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999988763
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.4e-07 Score=83.89 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=73.0
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCCh--HHH
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFS-ESPLLWRTLVSV-SKLMANS--KFS 652 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~-~~~~g~~--~~a 652 (754)
.|++++|...++...+. .+.+...+..++.+|...|++++|++.+++. ... .++..|..+..+ +...|+. ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444555555444431 1223344455555555555555555555443 112 256667777777 6677777 888
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 653 ILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
...++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888876553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-07 Score=92.62 Aligned_cols=142 Identities=12% Similarity=0.032 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 530 IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 530 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
...|..+...|.+.|++++|+..|++.++ +.|+...+ ..+++...-. . ....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~~-~--------~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQA-L--------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHHH-H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHHH-H--------HHHHHHHHHH
Confidence 34566777777778888888888887776 33432100 0011111000 0 0234556666
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHH
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++..++..++.++...|++++|.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777666654 2233 68889999999999999999999999999999999999999999999999999994
Q ss_pred -HHHHHH
Q 004425 688 -KVRTTM 693 (754)
Q Consensus 688 -~~~~~m 693 (754)
..+++|
T Consensus 285 ~~~~~~~ 291 (336)
T 1p5q_A 285 KKLYANM 291 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 455555
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.8e-07 Score=78.58 Aligned_cols=114 Identities=8% Similarity=-0.034 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PF-SESPLLWRTLVSVSK 644 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 644 (754)
.+..+...+...|++++|..+|++..+ -.+.+...+..++.+|...|++++|++.+++. .. +.+...|..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 444444445555555555555554433 11113344555555555555555555555443 11 235778888888889
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCC
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
..|++++|...++++++++|++...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999887764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.9e-07 Score=77.74 Aligned_cols=117 Identities=6% Similarity=-0.042 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
.+..++..+.+.|++++|++.+++. ...| ++..|..+..++...|++++|+..++++++++|+++..|..++.+|...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4556666777777777777777654 2233 6888999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHH
Q 004425 681 GMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDE 739 (754)
Q Consensus 681 g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 739 (754)
|++++|...+++..+.... ....|....+...+..+..+
T Consensus 86 ~~~~~A~~~~~~al~~~p~--------------------~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 86 KEYASALETLDAARTKDAE--------------------VNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TCHHHHHHHHHHHHHHHHH--------------------HHTTTTHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhCcc--------------------cCCchhHHHHHHHHHHHHHh
Confidence 9999999999987653211 01246666677777665544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.60 E-value=8.2e-08 Score=91.65 Aligned_cols=181 Identities=8% Similarity=-0.049 Sum_probs=116.3
Q ss_pred hcCCHHHHHHHHhccCC--C-ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCCCHH--------------
Q 004425 511 KCGSIDGAFQIFKGISD--R-DIVSWNAM-------LSAYALHGLGKGALLLFEEMKREGFAPDDI-------------- 566 (754)
Q Consensus 511 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 566 (754)
..++...|.+.|.++.+ | ....|..+ ...+...++..+++..+++-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45667777777776643 2 33566666 4555555555555555555443 333321
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 004425 567 --------SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESP----L 634 (754)
Q Consensus 567 --------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 634 (754)
....+..++...|++++|.+.|+.+.. ..|+......+...+.+.|++++|++.++.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123345567777888888888877643 2343325556666777888888888888765433433 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhccC--CC-CcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 635 LWRTLVSVSKLMANSKFSILASKRLLDLE--PK-DAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 635 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
++..+..++...|+.++|+..++++..-. |. .+.....++.++.+.|+.++|...++++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56677777888888888888888887543 44 4457777888888888888888888877663
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-06 Score=82.19 Aligned_cols=173 Identities=10% Similarity=-0.074 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHH
Q 004425 483 GRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD-RDIVSWNAMLSAYALHG----LGKGALLLFEEMK 557 (754)
Q Consensus 483 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 557 (754)
|.+.+.+..+.| ++..+..|...|...+++++|...|++..+ .+..++..|...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344455555543 555666666677777777777777776643 355566666666666 5 7778888887777
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHhh----cCCHHHHHHHHHh
Q 004425 558 REGFAPDDISILGVLQACIY----SGLSEGGICLFNEIEQIYGLRPI---LEHFACMVDLLGR----AGRLSEAMNLINS 626 (754)
Q Consensus 558 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 626 (754)
+.| +...+..|...|.. .+++++|..+|++..+ ..|. ...+..|..+|.. .+++++|++++++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 644 44566666666665 6778888888877744 3332 5667777777777 7778888888876
Q ss_pred CC-CCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHhhccCCC
Q 004425 627 SP-FSESPLLWRTLVSVSKLM-A-----NSKFSILASKRLLDLEPK 665 (754)
Q Consensus 627 ~~-~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p~ 665 (754)
.. ..+++..+..|...+... | |.++|...++++.+....
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 52 224566677777766543 3 788888888888876543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-07 Score=77.85 Aligned_cols=94 Identities=14% Similarity=0.023 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
.+..++..+.+.|++++|+..+++. ...| +...|..+..++...|+.++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888889999998888765 3344 7889999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhC
Q 004425 681 GMLDEAAKVRTTMNDL 696 (754)
Q Consensus 681 g~~~~a~~~~~~m~~~ 696 (754)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.8e-07 Score=80.39 Aligned_cols=110 Identities=10% Similarity=-0.039 Sum_probs=76.9
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 004425 561 FAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWR 637 (754)
Q Consensus 561 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 637 (754)
+.|+. ..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.+++. ...| ++..|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 44433 35555666666777777777777766552 2224556666777777777777777777654 2233 577888
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 638 TLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 638 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
.+..++...|+.++|+..++++++++|+++.....
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 89999999999999999999999999988766443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-07 Score=80.80 Aligned_cols=99 Identities=6% Similarity=-0.054 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSK 644 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 644 (754)
.+..+...+.+.|++++|...|+++... -+.+...|..+..+|.+.|++++|++.|++. ...| ++..|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 4444445555555555555555555441 1223444555555555555555555555543 2233 5677888888888
Q ss_pred hcCChHHHHHHHHHhhccCCCCc
Q 004425 645 LMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
..|++++|+..+++++++.|+++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888888888888888743
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.51 E-value=7.9e-07 Score=84.87 Aligned_cols=134 Identities=10% Similarity=-0.025 Sum_probs=74.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHHhhc
Q 004425 537 LSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI--LEHFACMVDLLGRA 614 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~ 614 (754)
...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+.... .. .|. ...+..+..++.+.
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHHHHC
Confidence 3444445555555555554443 223333333333345555555555555543321 00 110 12344556666666
Q ss_pred CCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHH
Q 004425 615 GRLSEAMNLINSS---PFSE--SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSN 675 (754)
Q Consensus 615 g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 675 (754)
|++++|++.+++. +..| .+..+..+..+++..|+.++|...++++++.+|+ +.++..|.+
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 6666666666654 1113 2346667777788888888888888888888888 666665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=8.4e-08 Score=88.74 Aligned_cols=170 Identities=6% Similarity=-0.094 Sum_probs=99.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004425 504 ALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGL 580 (754)
Q Consensus 504 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 580 (754)
..+......|+++++.+.|+.-.. .....|..+...+...|++++|+..|++.++ +.|+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------h
Confidence 334445556666666666654432 1334566677777777888888888877776 33322100000 0
Q ss_pred HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004425 581 SEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKR 658 (754)
Q Consensus 581 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 658 (754)
...-. ..+ ....+..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...+++
T Consensus 79 ~~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000 000 0234556667777777777777777654 2233 678888999999999999999999999
Q ss_pred hhccCCCCcchHHHHHHHHHhcCCchHHH-HHHHHHh
Q 004425 659 LLDLEPKDAGSFILVSNMYAGQGMLDEAA-KVRTTMN 694 (754)
Q Consensus 659 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~ 694 (754)
+++++|++...+..++.++...|+.+++. ..++.|-
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998888877 4455553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.50 E-value=7.6e-07 Score=73.02 Aligned_cols=98 Identities=11% Similarity=0.067 Sum_probs=81.7
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC--CcchHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PF-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK--DAGSFILVSNM 676 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 676 (754)
...+..++..+.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++++.+|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445666777777888888888877654 22 236788889999999999999999999999999999 99999999999
Q ss_pred HHhc-CCchHHHHHHHHHhhCCC
Q 004425 677 YAGQ-GMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 677 ~~~~-g~~~~a~~~~~~m~~~~~ 698 (754)
|... |++++|.+.+++......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999998866443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-06 Score=77.53 Aligned_cols=106 Identities=12% Similarity=-0.003 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 004425 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVS 643 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 643 (754)
..+..+...+...|++++|+.+|++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34555556666666666666666666542 1123344555555555555555555555433 1222 355555555555
Q ss_pred HhcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 644 KLMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 644 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
...|++++|+..++++++++|++...+...
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 555555555555555555555555544333
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.5e-06 Score=78.90 Aligned_cols=156 Identities=13% Similarity=0.021 Sum_probs=79.4
Q ss_pred hcCCHHHHHH---HHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHH
Q 004425 511 KCGSIDGAFQ---IFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKRE----GFAPD-DISILGVLQACIYSGLSE 582 (754)
Q Consensus 511 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 582 (754)
..|++++|.+ .+..-......++..+...+...|++++|+..+++.++. +..|. ...+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333322223345555566666666666666666655531 11111 124445555555556666
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004425 583 GGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSE--SPLLWRTLVSVSKLMANSKFSILASKRLL 660 (754)
Q Consensus 583 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 660 (754)
+|..++++..+... ..+..+ ....+..+...+...|++++|...+++++
T Consensus 84 ~A~~~~~~al~~~~-----------------------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLA-----------------------------SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHH-----------------------------HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------------------------HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 65555555443211 011011 12344555556666666666666666666
Q ss_pred ccCCC--C----cchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 661 DLEPK--D----AGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 661 ~~~p~--~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++.+. + ...+..++.+|...|++++|.+.+++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 54221 1 12356777778888888888777766543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-05 Score=78.25 Aligned_cols=158 Identities=11% Similarity=-0.013 Sum_probs=119.5
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC-----Ch---h-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH----HHHHH
Q 004425 505 LITMYAKCGSIDGAFQIFKGISDR-----DI---V-SWNAMLSAYALHGLGKGALLLFEEMKREGFA-PDD----ISILG 570 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~~-----~~---~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ 570 (754)
.+..+...|++++|...+++..+. +. . .+..+...+...|++++|+..|++.++.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788899999999999886431 11 1 2334666777778999999999999984333 222 26888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhC----CCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYG----LRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-------PFSES-PLLWR 637 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 637 (754)
+..+|...|++++|..+|+++.+... ..+. ..++..++.+|.+.|++++|++++++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999875321 1111 237889999999999999999998754 22222 67888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHhhcc
Q 004425 638 TLVSVSKLMAN-SKFSILASKRLLDL 662 (754)
Q Consensus 638 ~l~~~~~~~g~-~~~a~~~~~~~~~~ 662 (754)
.+..++...|+ .++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999998864
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00014 Score=77.17 Aligned_cols=100 Identities=14% Similarity=0.008 Sum_probs=58.5
Q ss_pred cCC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCC-HhHH
Q 004425 136 DDG-DYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGC-FREA 213 (754)
Q Consensus 136 ~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A 213 (754)
+.| +...|..+|+.+... -|. ++.+.+.++|+..+.. .|++.+|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377777777777543 122 7888888888887763 4688888877777666653 3344
Q ss_pred HHHhccCC------CCCcchHHHHHHHHH----HcCChhHHHHHHHHhHH
Q 004425 214 ENVFRGLA------YKDVRCVNFMILEYN----KAGESEMAFHVFVHLLS 253 (754)
Q Consensus 214 ~~~~~~~~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~ 253 (754)
..+|+... ..+...|...+.-+. .+++.+.+..+|++...
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 44554322 124456666665443 23556677777777765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-06 Score=75.58 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=78.5
Q ss_pred CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 600 ILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 600 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
+...+..++..+...|++++|+..+++. ...| ++..|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3455666667777777777777776644 2233 5788888999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHhhC
Q 004425 678 AGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 678 ~~~g~~~~a~~~~~~m~~~ 696 (754)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999887653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.5e-07 Score=78.50 Aligned_cols=108 Identities=7% Similarity=-0.052 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSK 644 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 644 (754)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.+++. ...| ++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444455555566666666666655441 1223445555666666666666666666543 2223 5677888888889
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHH
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNM 676 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 676 (754)
..|++++|...++++++++|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999999888766554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=6e-07 Score=75.83 Aligned_cols=93 Identities=6% Similarity=-0.026 Sum_probs=75.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc-------hHHHH
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG-------SFILV 673 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 673 (754)
.+..++..+.+.|++++|++.|++. ...| ++..|..+..++...|++++|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3455667777777777777777654 3334 6888999999999999999999999999999988654 67788
Q ss_pred HHHHHhcCCchHHHHHHHHHhh
Q 004425 674 SNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 674 ~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
|.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999987644
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-06 Score=79.60 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=97.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHH-HhhcCCH-
Q 004425 541 ALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDL-LGRAGRL- 617 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~- 617 (754)
...|++++|+..+++..+. .| +...+..+...+...|++++|..+|+++.+. .+.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 3567888888888888873 35 4467888888888999999999999888763 12345677778888 7788888
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 618 -SEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 618 -~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
++|.+.++++ ...| +...|..+...+...|++++|...++++++++|++......
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 9999888765 2334 68889999999999999999999999999999998665443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.9e-06 Score=70.18 Aligned_cols=105 Identities=8% Similarity=-0.039 Sum_probs=54.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMAN 648 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 648 (754)
+...+...|++++|...|++.... .+.+...+..++.++.+.|++++|.+.+++. ...| +...|..+..++...|+
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence 333344444444444444444331 1112233334444444444444444444332 1122 45666677777777777
Q ss_pred hHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 649 SKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 649 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
+++|...++++++.+|+++..+..++.+.
T Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 88 FEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 77777777777777777776666665543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-06 Score=73.30 Aligned_cols=95 Identities=11% Similarity=0.057 Sum_probs=86.7
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
...+..++..+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 456788999999999999999999875 4444 78899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhh
Q 004425 679 GQGMLDEAAKVRTTMND 695 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~~ 695 (754)
..|++++|...+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999998765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-06 Score=71.76 Aligned_cols=96 Identities=8% Similarity=0.065 Sum_probs=85.9
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
...+..++..+...|++++|.+.+++. ...| ++..|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345777888999999999999999876 2234 78899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhC
Q 004425 679 GQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~~~ 696 (754)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999987653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=77.35 Aligned_cols=130 Identities=10% Similarity=0.048 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhC-----CCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYG-----LRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVS 641 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 641 (754)
.+......+.+.|++++|+..|++...... -.|+...+ .-+ .+.+..+|..+..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------~~~----~~~~~~~~~nla~ 71 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------VEL----DRKNIPLYANMSQ 71 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------HHH----HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------HHH----HHHHHHHHHHHHH
Confidence 555666677777777777777776655100 00110000 000 0113567888889
Q ss_pred HHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCC
Q 004425 642 VSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGK 721 (754)
Q Consensus 642 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 721 (754)
++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------------------------- 126 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN------------------------- 126 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc-------------------------
Confidence 9999999999999999999999999999999999999999999999999887553
Q ss_pred CCCChH-HHHHHHHHHHHHHHHc
Q 004425 722 DHPESE-EIYSKLDLLNDEMKLK 743 (754)
Q Consensus 722 ~~~~~~-~~~~~l~~l~~~~~~~ 743 (754)
.|... .+...|..+...+++.
T Consensus 127 -~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 127 -HPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp -CGGGHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHH
Confidence 34444 5677777777766643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-05 Score=77.56 Aligned_cols=209 Identities=11% Similarity=0.026 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhccCC---CChhHHHHHHHHHHHc-C-ChHHHHHHHHH
Q 004425 482 RGRSLHAYSIKTGYAADVIVGNALITMYAKCG-SIDGAFQIFKGISD---RDIVSWNAMLSAYALH-G-LGKGALLLFEE 555 (754)
Q Consensus 482 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~~~ 555 (754)
+|.++.+.++..+ +-+..+|+.--..+...| .+++++.+++.+.. .+..+|+.-...+... + +++++++++++
T Consensus 72 ~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 72 RALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3444444444433 223333444444444555 36666666666543 3445566555555554 5 66677777777
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCC-------HHH
Q 004425 556 MKREGFAP-DDISILGVLQACIYSGLSE--------GGICLFNEIEQIYGLRPILEHFACMVDLLGRAGR-------LSE 619 (754)
Q Consensus 556 m~~~g~~p-~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~ 619 (754)
+++ ..| |...|+.-...+.+.|.++ +++++++++.+. -.-+-..|+....++.+.++ +++
T Consensus 151 ~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 151 SLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 766 334 3445555555554444444 677777777662 22344556666666666665 577
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHhhccC------CCCcchHH
Q 004425 620 AMNLINSS-PFSE-SPLLWRTLVSVSKLMANS--------------------KFSILASKRLLDLE------PKDAGSFI 671 (754)
Q Consensus 620 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~~ 671 (754)
++++++++ ...| |...|+-+...+...|+. ........++.... +..+.+..
T Consensus 227 ELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 227 ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 77777654 3334 788888877777766654 22222333333222 45667889
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhh
Q 004425 672 LVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 672 ~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.|+++|...|+.++|.++++.+.+
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Confidence 999999999999999999999864
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-05 Score=79.58 Aligned_cols=162 Identities=10% Similarity=-0.067 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC--C-Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---CC--HH
Q 004425 501 VGNALITMYAKCGSIDGAFQIFKGISD--R-DI------VSWNAMLSAYALHGLGKGALLLFEEMKREGFA---PD--DI 566 (754)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~ 566 (754)
.+...+..+...|++++|.+.++...+ + .. ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566778888999999888875432 1 11 22344556677788999999999988863221 22 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-----ccHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-----LEHFACMVDLLGRAGRLSEAMNLINSS-------PFSE-SP 633 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~ 633 (754)
+++.+...|...|++++|..+|+++.+.....|+ ...+..++.+|.+.|++++|++.+++. .... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999988742222222 147888999999999999999998754 1111 16
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHhhcc
Q 004425 634 LLWRTLVSVSKLMANSKFS-ILASKRLLDL 662 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 662 (754)
.++..+..++...|+.++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7788889999999999999 7778887764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.9e-06 Score=75.49 Aligned_cols=93 Identities=12% Similarity=-0.061 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
..|..+...+...|++++|+..|++.++ +.| +...|..+..++...|++++|+..|++..+. .+.+...|..+..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3455555666666666666666666665 334 3345555555666666666666666666541 1222445556666
Q ss_pred HHhhcCCHHHHHHHHHhC
Q 004425 610 LLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~ 627 (754)
+|.+.|++++|++.+++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 666666666666666543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-06 Score=71.54 Aligned_cols=109 Identities=6% Similarity=-0.113 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 004425 568 ILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKL 645 (754)
Q Consensus 568 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 645 (754)
+..+...+...|++++|+..|++..+. .+.+...|..++.+|.+.|++++|++.+++. ...| ++..|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 333444444444555555554444431 1122344445555555555555555555433 1223 57778888888888
Q ss_pred cCChHHHHHHHHHhhccC------CCCcchHHHHHHHHH
Q 004425 646 MANSKFSILASKRLLDLE------PKDAGSFILVSNMYA 678 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 678 (754)
.|++++|...++++++++ |++...+..+..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 899999999999999988 887777777766543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.1e-06 Score=72.09 Aligned_cols=115 Identities=10% Similarity=-0.038 Sum_probs=69.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHH
Q 004425 529 DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD----DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHF 604 (754)
Q Consensus 529 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 604 (754)
+...|..+...+...|++++|+..|++..+ ..|+ ...+..+..++...|++++|...+++..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------- 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---------- 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----------
Confidence 334555555555555666666666665555 3344 233444444444444444444444444331
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 605 ACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 605 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
.+.+...|..+..++...|++++|...++++++++|++...+..+..+...
T Consensus 95 ------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 95 ------------------------DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp ------------------------TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred ------------------------CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 122566777788888888888888888888888888888777777666543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.7e-06 Score=71.24 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=86.2
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-P-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
...+..++..+.+.|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456778899999999999999999876 2 23468899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhC
Q 004425 679 GQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~~~ 696 (754)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-06 Score=74.83 Aligned_cols=106 Identities=10% Similarity=0.022 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSE-SPLLWRTLVSVSKL 645 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~ 645 (754)
.+......+...|++++|+..|++..+-..-.|+. +.....| +...|..+..++..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~-----------------------~a~~~~~~~a~a~~n~g~al~~ 69 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE-----------------------EAFDHAGFDAFCHAGLAEALAG 69 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT-----------------------SCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch-----------------------hhhhhccchHHHHHHHHHHHHH
Confidence 34455556666777777777777765521111111 0000001 24488888888889
Q ss_pred cCChHHHHHHHHHhhcc-------CCCCcchH----HHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 646 MANSKFSILASKRLLDL-------EPKDAGSF----ILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.|++++|+..+++++++ +|+++.+| ..++.++...|++++|+..|++..+
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999998 99999999 9999999999999999999998755
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=5.3e-06 Score=70.02 Aligned_cols=96 Identities=8% Similarity=0.078 Sum_probs=86.0
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
...+..++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 456778889999999999999999875 2233 68899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhC
Q 004425 679 GQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~~~ 696 (754)
..|++++|...+++..+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999999987653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-05 Score=73.52 Aligned_cols=128 Identities=16% Similarity=0.017 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC---------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-C
Q 004425 499 VIVGNALITMYAKCGSIDGAFQIFKGISD---------RDIVSWNAMLSAYALHGLGKGALLLFEEMKRE----GFAP-D 564 (754)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~ 564 (754)
..++..+...|...|++++|...|++... ....++..+...|...|++++|+..+++..+. +-.| .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 44455555556666666666665554432 12245667777788888888888888777652 1122 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHh
Q 004425 565 -DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LEHFACMVDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 565 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (754)
...+..+...+...|++++|..++++......-..+ ...+..+..++...|++++|.+.+++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 235667777788888888888888777542111111 11234555555555665555555544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.8e-06 Score=72.95 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=82.4
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSN 675 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 675 (754)
...+..++..+...|++++|.+.+++. ...|+ ...|..+...+...|++++|+..++++++++|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 455667777788888888888888754 44565 6788889999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHhh
Q 004425 676 MYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 676 ~~~~~g~~~~a~~~~~~m~~ 695 (754)
+|...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=93.04 Aligned_cols=116 Identities=7% Similarity=0.007 Sum_probs=80.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFS 652 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 652 (754)
+...|++++|.+.|++..+. -+.+...|..++.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455555555555555441 1122445556666666666666666666543 2334 678899999999999999999
Q ss_pred HHHHHHhhccCCCCcchHHHHHHH--HHhcCCchHHHHHHHH
Q 004425 653 ILASKRLLDLEPKDAGSFILVSNM--YAGQGMLDEAAKVRTT 692 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 692 (754)
+..++++++++|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999998 8899999999999884
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00022 Score=70.43 Aligned_cols=229 Identities=10% Similarity=0.003 Sum_probs=160.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-CHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDP-VTFSRLLSLSASQA-CLVRGRSLHAYSIKTGYAADVIVGNALITMYAKC-G-SIDG 517 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~ 517 (754)
.+..++|++++++++.. .|+. ..|+.--..+...+ .++++..+++.+.... +-+..+|+.-...+.+. + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 55667888888888876 5555 34555555566666 5888888888888765 44666777766666666 6 8889
Q ss_pred HHHHHhccCC---CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 004425 518 AFQIFKGISD---RDIVSWNAMLSAYALHGLGK--------GALLLFEEMKREGFAPDDISILGVLQACIYSGL------ 580 (754)
Q Consensus 518 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 580 (754)
++++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++++.... |...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 9999998876 45567776655555555555 899999999985422 56688888777777775
Q ss_pred -HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCH--------------------HHHHHHHHhCC-C-------CC
Q 004425 581 -SEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRL--------------------SEAMNLINSSP-F-------SE 631 (754)
Q Consensus 581 -~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~-------~p 631 (754)
+++++++++++... .+-+...|+-+-.++.+.|+. .+..++..++. . .+
T Consensus 223 ~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 68889998888762 333455666666667666653 44455555441 1 25
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhh-ccCCCCcchHHHHHHH
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLL-DLEPKDAGSFILVSNM 676 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~ 676 (754)
.+..+..|+..|...|+.++|.++++.+. +.+|-....|...+..
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 78899999999999999999999999997 6788877666655543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=8.4e-07 Score=81.91 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.+|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 68888999999999999999999999999999999999999999999999999999998765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.9e-06 Score=70.91 Aligned_cols=91 Identities=15% Similarity=0.061 Sum_probs=65.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH---HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC---cchHHHHHHH
Q 004425 605 ACMVDLLGRAGRLSEAMNLINSS-PFSE-SP---LLWRTLVSVSKLMANSKFSILASKRLLDLEPKD---AGSFILVSNM 676 (754)
Q Consensus 605 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 676 (754)
..++..+.+.|++++|.+.++++ ...| ++ ..|..+..++...|++++|...++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34555666667777777666654 1122 22 466777777788888888888888888888887 6668888888
Q ss_pred HHhcCCchHHHHHHHHHhh
Q 004425 677 YAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 677 ~~~~g~~~~a~~~~~~m~~ 695 (754)
|...|++++|...++++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887655
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.28 E-value=6.4e-06 Score=86.93 Aligned_cols=143 Identities=9% Similarity=0.070 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 530 IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 530 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
...|..+...|.+.|++++|+..|++.++ +.|+...+ .-+...+ .... ....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~-~~~~--------~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL-----------SEKESKA-SESF--------LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC-----------CHHHHHH-HHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC-----------ChHHHHH-HHHH--------HHHHHHHHHH
Confidence 34677777777888888888888887776 33332100 0000000 0000 0235666777
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHH
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
+|.+.|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777654 2233 68889999999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHHh
Q 004425 688 K-VRTTMN 694 (754)
Q Consensus 688 ~-~~~~m~ 694 (754)
+ .+++|-
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 5 455553
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.26 E-value=4.5e-06 Score=88.45 Aligned_cols=114 Identities=7% Similarity=-0.073 Sum_probs=50.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 618 (754)
+.+.|++++|++.|++.++ +.|+ ...+..+..++.+.|++++|+..+++..+ --+.+...+..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 3344555555555555554 2333 23444455555555555555555555543 11122344445555555555555
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCChHHHHHHHH
Q 004425 619 EAMNLINSS-PFSE-SPLLWRTLVSV--SKLMANSKFSILASK 657 (754)
Q Consensus 619 ~A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~a~~~~~ 657 (754)
+|++.+++. ...| +...+..+..+ +...|++++|+..++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555433 1112 22233333333 445556666666665
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1e-05 Score=71.83 Aligned_cols=126 Identities=6% Similarity=-0.064 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDL 610 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 610 (754)
.|..+...+...|++++|+..|++.++. .| +...+..+..++...|++++|...+++..+. .+.+...+..++.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 4556666777777777777777777763 34 3456666777777777777777777777662 23345567777777
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCChHHHHHHHHHhhc
Q 004425 611 LGRAGRLSEAMNLINSS-PFSE-SPLLWRTL--VSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
+...|++++|.+.+++. ...| +...|..+ +..+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77777777777777654 2223 44555333 3335666788888877776544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=5.4e-06 Score=70.94 Aligned_cols=109 Identities=6% Similarity=-0.120 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 004425 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVS 643 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 643 (754)
..+..+...+...|++++|...|+..... .+.+...+..++.+|...|++++|+..+++. ...| ++..|..+..++
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34445555555555555555555555441 1222344555555555555665555555543 1223 577788888888
Q ss_pred HhcCChHHHHHHHHHhhccCCC-----CcchHHHHHHH
Q 004425 644 KLMANSKFSILASKRLLDLEPK-----DAGSFILVSNM 676 (754)
Q Consensus 644 ~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~ 676 (754)
...|++++|+..++++++++|+ +......+..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887 44444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.21 E-value=7.8e-06 Score=69.02 Aligned_cols=93 Identities=6% Similarity=-0.004 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC-------cchHHHH
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-P-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD-------AGSFILV 673 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l 673 (754)
.+..++..+...|++++|...+++. . .+.+...|..+...+...|++++|...++++++..|++ +..+..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4556666677777777777777654 1 22367788888888999999999999999999988876 7789999
Q ss_pred HHHHHhcCCchHHHHHHHHHhh
Q 004425 674 SNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 674 ~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+.+|...|++++|...+++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999998766
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.21 E-value=9.9e-07 Score=73.27 Aligned_cols=82 Identities=7% Similarity=0.027 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 004425 614 AGRLSEAMNLINSS-PF---SE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 614 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 688 (754)
.|++++|++.+++. .. .| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666544 22 23 466777777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHhh
Q 004425 689 VRTTMND 695 (754)
Q Consensus 689 ~~~~m~~ 695 (754)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00018 Score=70.74 Aligned_cols=178 Identities=8% Similarity=0.004 Sum_probs=105.5
Q ss_pred HHHHHHHHhccCC---CChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 004425 515 IDGAFQIFKGISD---RDIVSWNAMLSAYALHG--LGKGALLLFEEMKREGFAPDDISILGVLQACIYSGL-SEGGICLF 588 (754)
Q Consensus 515 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 588 (754)
+++++.+++.+.. .+..+|+.-.-.+...| .+++++.+++++.+...+ |...|+.-...+...|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3455555555432 34456665555555555 366777777777763311 44566665556666666 46677777
Q ss_pred HHHHHHhCCCCCccHHHHHHHHHhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 004425 589 NEIEQIYGLRPILEHFACMVDLLGRA--------------GRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLM------ 646 (754)
Q Consensus 589 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 646 (754)
+.+.+. -+-+...|+....++.+. +.++++++++++. ...| |..+|+-+...+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 766652 223344444444444333 4567777777654 2334 788887666666554
Q ss_pred -----CChHHHHHHHHHhhccCCCCcchHHHHHHHH---HhcCCchHHHHHHHHHhh
Q 004425 647 -----ANSKFSILASKRLLDLEPKDAGSFILVSNMY---AGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 647 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~ 695 (754)
+.+++++..++++++++|++.=.+..++.+. ...|..+++...+.++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3578888899999999998743333333221 235677788888887765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.18 E-value=7.5e-06 Score=82.50 Aligned_cols=112 Identities=10% Similarity=-0.004 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004425 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKL 645 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 645 (754)
..+..+...+...|++++|+..|++..+. .|+...+ ..+++.+.-. -...+|..+..++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~-----------~~~~~~~~~~-----~~~~~~~nla~~~~~ 208 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSF-----------SNEEAQKAQA-----LRLASHLNLAMCHLK 208 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCC-----------CSHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccC-----------ChHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 46666777777777777777777777652 1221100 0011111100 025788999999999
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 646 MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 209 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.9e-05 Score=82.75 Aligned_cols=168 Identities=10% Similarity=-0.021 Sum_probs=134.9
Q ss_pred CHHHHHHHHhccCC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 004425 514 SIDGAFQIFKGISD---RDIVSWNAMLSAYALHGL----------GKGALLLFEEMKREGFAP-DDISILGVLQACIYSG 579 (754)
Q Consensus 514 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 579 (754)
.-++|++.++.+.. .+..+|+.--.++...|+ ++++++.++++++ ..| +..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence 34677777777753 344678777667766676 8999999999998 445 4468888888889999
Q ss_pred --CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------
Q 004425 580 --LSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG-RLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLM-------- 646 (754)
Q Consensus 580 --~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-------- 646 (754)
++++++++++++.+. -+-+...|+.-..++.+.| .+++++++++++ ...| |..+|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999873 2335567777777888888 899999999877 4445 799999888887763
Q ss_pred ------CChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchH
Q 004425 647 ------ANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDE 685 (754)
Q Consensus 647 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 685 (754)
+.++++.+.++++++++|+|..+|..+.+++...|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998665
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.16 E-value=9.8e-06 Score=79.34 Aligned_cols=112 Identities=7% Similarity=-0.126 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 004425 564 DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVS 641 (754)
Q Consensus 564 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 641 (754)
+...+..+...+...|++++|...|++..+. .+.+...|..++.+|.+.|++++|++.+++. ...| +...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4457778888889999999999999988772 2235677888899999999999999988764 4455 5788888888
Q ss_pred HHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 642 VSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 642 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
++...|++++|+..++++++++|+++..+...++..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 899999999999999999999888755444344433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.15 E-value=8.2e-06 Score=70.04 Aligned_cols=112 Identities=8% Similarity=-0.005 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCC
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAPD--------D-----ISILGVLQACIYSGLSEGGICLFNEIEQIYGLR 598 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 598 (754)
.+......+.+.|++++|+..|++.++ +.|+ . ..|..+..++.+.|++++|+..+++..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 355667778889999999999999988 5555 1 2677777777788888888777776654
Q ss_pred CCccHHHHHHHHHhhcCCHHHHHHHHH-hCCCCCC-HHHH----HHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 599 PILEHFACMVDLLGRAGRLSEAMNLIN-SSPFSES-PLLW----RTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 599 p~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
+|+ .....|| ...| .....++...|++++|+..|+++++++|++...+.-
T Consensus 86 ------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 86 ------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp ------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred ------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 122 2244664 7788 999999999999999999999999999998876554
Q ss_pred HH
Q 004425 673 VS 674 (754)
Q Consensus 673 l~ 674 (754)
+.
T Consensus 142 ~~ 143 (159)
T 2hr2_A 142 KE 143 (159)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00032 Score=68.99 Aligned_cols=224 Identities=12% Similarity=0.054 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcccc----------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-
Q 004425 446 EDVMVLFSQQRLAGMEPDPVT-FSRLLSLSASQAC----------LVRGRSLHAYSIKTGYAADVIVGNALITMYAKCG- 513 (754)
Q Consensus 446 ~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 513 (754)
++|+.++..+... .|+..| |+.--..+...+. ++++..+++.+.... +-+..+|+.-...+.+.|
T Consensus 47 ~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 47 ESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCc
Confidence 4566666666643 455432 3322222222222 567777777777654 446677777666777777
Q ss_pred -CHHHHHHHHhccCC---CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------
Q 004425 514 -SIDGAFQIFKGISD---RDIVSWNAMLSAYALHGL-GKGALLLFEEMKREGFAPDDISILGVLQACIYS---------- 578 (754)
Q Consensus 514 -~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---------- 578 (754)
.+++++.+++.+.+ .|..+|+--.-.+...|. ++++++.++++++..+. |...|+.....+.+.
T Consensus 124 ~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 124 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccccccc
Confidence 48888888888854 567788877777777787 58899999999984422 455666665555544
Q ss_pred ----CCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhc-----------CCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 004425 579 ----GLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRA-----------GRLSEAMNLINSS-PFSESPLLWRTLVS 641 (754)
Q Consensus 579 ----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 641 (754)
+.++++++++..... ..|+ ...|+-+-.++.+. +.++++++.++++ ...||. .|..+..
T Consensus 203 ~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~ 278 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTI 278 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHH
Confidence 457888888888865 2344 44555444444444 4578888888776 445654 4553333
Q ss_pred HH-----HhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 642 VS-----KLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 642 ~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
+. ...|..++....+.++.+++|.....|..+..-+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 22 2357788999999999999999887777765543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.15 E-value=8.1e-06 Score=83.23 Aligned_cols=137 Identities=8% Similarity=0.001 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVD 609 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 609 (754)
..|..+...+.+.|++++|+..|++.++. .|+.. .....+++. ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHHH
Confidence 45667777788888888888888777751 11100 000111111 1112 2346778888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHH
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999998888765 4445 68899999999999999999999999999999999999999999999999888876
Q ss_pred HH
Q 004425 688 KV 689 (754)
Q Consensus 688 ~~ 689 (754)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 54
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.3e-05 Score=65.42 Aligned_cols=98 Identities=13% Similarity=0.017 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CC--CHHHHHHHHHHH
Q 004425 568 ILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PF-SE--SPLLWRTLVSVS 643 (754)
Q Consensus 568 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p--~~~~~~~l~~~~ 643 (754)
+..+...+...|++++|...|+++.+. .+.+...+..++.++...|++++|.+.+++. .. +. +...|..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 344444445555555555555555441 1222344455555555555555555555543 11 22 467777888888
Q ss_pred Hhc-CChHHHHHHHHHhhccCCCCc
Q 004425 644 KLM-ANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 644 ~~~-g~~~~a~~~~~~~~~~~p~~~ 667 (754)
... |+.++|...++++++..|.++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888 888888888888888888754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.14 E-value=2e-05 Score=66.26 Aligned_cols=61 Identities=5% Similarity=-0.062 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
.+|..+...+.+.|++++|+..|++.++ +.|+. ..|..+..+|...|++++|+..+++..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3466677777788888888888888777 45544 4677777777888888888887777755
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.8e-05 Score=66.76 Aligned_cols=114 Identities=10% Similarity=-0.102 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDL 610 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 610 (754)
.|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|..+++++.... |+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 4555666666666666666666666653 23 33455555556666666666666665554421 00
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 611 LGRAGRLSEAMNLINSSPFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
..++ ..+|..+..++...|++++|...++++++..| ++.....++.++..
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 0112 55667777778888888888888888888887 46666666655544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.14 E-value=7.2e-06 Score=82.66 Aligned_cols=145 Identities=10% Similarity=-0.016 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLL 611 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 611 (754)
.|..+...+.+.|++++|+..|++.+. +.|+...+ ...|+.+++...+. ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-------~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMF-------QLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHH-------TCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchhh-------hhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 466677788888999999999999887 45654421 22333333332221 12677888889
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHH-HHhcCCchHHHH
Q 004425 612 GRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNM-YAGQGMLDEAAK 688 (754)
Q Consensus 612 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~a~~ 688 (754)
.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|+.+ ....+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888765 3334 688899999999999999999999999999999999999999988 445577888888
Q ss_pred HHHHHhhC
Q 004425 689 VRTTMNDL 696 (754)
Q Consensus 689 ~~~~m~~~ 696 (754)
.+++|-..
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 88877543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-05 Score=67.44 Aligned_cols=96 Identities=9% Similarity=-0.033 Sum_probs=55.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 004425 570 GVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMA 647 (754)
Q Consensus 570 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 647 (754)
.+...+.+.|++++|+..|++..+. -+.+...+..+..++.+.|++++|++.+++. ...| +...|..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3344455555555555555555441 1223444555555555555566655555543 2234 5777888888888888
Q ss_pred ChHHHHHHHHHhhccCCCCc
Q 004425 648 NSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 648 ~~~~a~~~~~~~~~~~p~~~ 667 (754)
+.++|+..++++++++|+++
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 88899999999998888754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.3e-05 Score=84.22 Aligned_cols=163 Identities=8% Similarity=-0.140 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHh---CCCCC-cc
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREG-FAPDDI----SILGVLQACIYSGLSEGGICLFNEIEQIY---GLRPI-LE 602 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~ 602 (754)
++..+...|...|++++|.++++++...- -.++.. ..+.+-..+...|.+++|..+++...... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667888888888888888888776421 111221 22223333445678888888888765521 22222 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC---C----c
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-------PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK---D----A 667 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~----~ 667 (754)
.+..++..|...|++++|.+++++. ..++ ...++..++..|...|++++|...+++++...+. + .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6678888999999999998888754 1122 3567888889999999999999999998876432 1 2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
..+..++.++...|+|++|...+.+.-
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 457778888999999999998876663
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.6e-05 Score=70.07 Aligned_cols=135 Identities=14% Similarity=0.093 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFA-PDD----ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFAC 606 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 606 (754)
++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|..++++..+..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------- 79 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA----------- 79 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------
Confidence 4556666666777777777777666542111 111 244455555555566666665555544310
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC------CcchHHHHHHHHHh
Q 004425 607 MVDLLGRAGRLSEAMNLINSSPFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK------DAGSFILVSNMYAG 679 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~ 679 (754)
...+..+ ...++..+...+...|++++|...+++++++.+. ....+..++.+|..
T Consensus 80 ------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 80 ------------------RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp ------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------HHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 0001001 1345566667777777777777777777765322 24568888999999
Q ss_pred cCCchHHHHHHHHHhh
Q 004425 680 QGMLDEAAKVRTTMND 695 (754)
Q Consensus 680 ~g~~~~a~~~~~~m~~ 695 (754)
.|++++|.+.+++..+
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999998887654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.9e-05 Score=64.62 Aligned_cols=103 Identities=7% Similarity=-0.060 Sum_probs=59.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C---HHHHHHHHHHHH
Q 004425 573 QACIYSGLSEGGICLFNEIEQIYGLRPIL---EHFACMVDLLGRAGRLSEAMNLINSS-PFSE-S---PLLWRTLVSVSK 644 (754)
Q Consensus 573 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~---~~~~~~l~~~~~ 644 (754)
..+...|++++|...|+.+.+.. +.+. ..+..++.++.+.|++++|.+.+++. ...| + +..+..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34444455555555555544311 1111 24444555555555555555555443 1122 2 566777778888
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
..|+.++|...++++++..|+++.....+..+-
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 888999999999999998888776655554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.5e-05 Score=83.86 Aligned_cols=97 Identities=7% Similarity=-0.068 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhc-----cCCCCc
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS---------PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLD-----LEPKDA 667 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 667 (754)
+++.|+.+|...|++++|+.++++. +..|+ ..+++.|...|...|++++|+.+++++++ +.|+++
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4555555555556665555555432 33444 55677888888888888888888888876 467765
Q ss_pred c---hHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004425 668 G---SFILVSNMYAGQGMLDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 668 ~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 699 (754)
. ....|+.++...|++++|+.+++++++...+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 4567888899999999999999999885543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-06 Score=71.35 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=75.2
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC------cchHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD------AGSFIL 672 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 672 (754)
...+..+...+.+.|++++|++.+++. ...| ++..|..+..++...|++++|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345666777777888888888877754 2233 68889999999999999999999999999999998 778889
Q ss_pred HHHHHHhcCCchHHHHHHHH
Q 004425 673 VSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~ 692 (754)
++.++...|++++|...+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 99999999988887766654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.06 E-value=8.4e-06 Score=72.23 Aligned_cols=124 Identities=14% Similarity=-0.019 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccH
Q 004425 530 IVSWNAMLSAYALHGLGKGALLLFEEMKREG------FAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEH 603 (754)
Q Consensus 530 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 603 (754)
...|......+.+.|++++|+..|++.++.- -.|+...+ ..+. +-....
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~~-----~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VELD-----RKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHHH-----HTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHHH-----HHHHHH
Confidence 3567888899999999999999999998730 01211100 0000 011234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc-chHHHHHHHHH
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA-GSFILVSNMYA 678 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~ 678 (754)
|..+..+|.+.|++++|+..+++. ...| ++..|..+..++...|++++|...++++++++|+++ .....+..+..
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 555566666666666666666543 2234 578888999999999999999999999999999987 55555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.3e-06 Score=70.03 Aligned_cols=92 Identities=10% Similarity=0.067 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHHhC--CCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 004425 579 GLSEGGICLFNEIEQIYG--LRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSIL 654 (754)
Q Consensus 579 g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 654 (754)
|++++|+..|++..+ .+ -+.+...+..++.+|.+.|++++|++.+++. ...| ++..+..+..++...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555555433 11 0112334555555555666666666655543 2223 57778888888888899999999
Q ss_pred HHHHhhccCCCCcchHH
Q 004425 655 ASKRLLDLEPKDAGSFI 671 (754)
Q Consensus 655 ~~~~~~~~~p~~~~~~~ 671 (754)
.++++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999998888776544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.9e-05 Score=63.15 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 631 ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.++..|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36889999999999999999999999999999999999999999999999999999999998755
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.2e-05 Score=79.99 Aligned_cols=112 Identities=9% Similarity=0.034 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 004425 565 DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSE-SPLLWRTLVSVS 643 (754)
Q Consensus 565 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~ 643 (754)
...+..+...+.+.|++++|+..|++..+... . .......+++.+ ..| +..+|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~---~----------~~~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE---G----------SRAAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---H----------HHHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh---c----------CccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 34577777788888889988888888766210 0 000011111111 223 567889999999
Q ss_pred HhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 644 KLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 644 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.6e-05 Score=68.61 Aligned_cols=95 Identities=13% Similarity=-0.062 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----
Q 004425 499 VIVGNALITMYAKCGSIDGAFQIFKGISD-----RDI----VSWNAMLSAYALHGLGKGALLLFEEMKREGFA-PD---- 564 (754)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~---- 564 (754)
..++..+...|...|++++|...+++..+ .+. .++..+...|...|++++|+..+++..+..-. ++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888999999999999999988753 222 47888999999999999999999998752111 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 565 DISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 565 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
...+..+...+...|++++|..++++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23566677778888888888888877655
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.98 E-value=5.1e-05 Score=80.00 Aligned_cols=131 Identities=8% Similarity=-0.044 Sum_probs=92.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHH
Q 004425 545 LGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 545 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
++++|+..|+...+ ..|+. ..+..+...+.+.|++++|+..|+++.+...-.+... -++..+
T Consensus 249 ~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~--------------~~~~~~- 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS--------------EKESKA- 311 (457)
T ss_dssp EEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHHHHH-
T ss_pred hcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC--------------hHHHHH-
Confidence 33444444443333 23333 4677777788888888888888888766321111100 011111
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 624 INSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 624 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
.+. -...+|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 312 ~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 312 SES----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 000 025678889999999999999999999999999999999999999999999999999999988664
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00012 Score=76.72 Aligned_cols=158 Identities=13% Similarity=-0.018 Sum_probs=119.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc
Q 004425 538 SAYALHGLGKGALLLFEEMKREGFAPDD----------------ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL 601 (754)
Q Consensus 538 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 601 (754)
..+.+.|++++|++.|.++++....... ..+..+...|...|++++|.+++..+....+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4566778899999998888874322111 246788899999999999999999987643333322
Q ss_pred ----cHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccC------
Q 004425 602 ----EHFACMVDLLGRAGRLSEAMNLINSS-------PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLE------ 663 (754)
Q Consensus 602 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 663 (754)
...+.+...+...|++++|.++++.. ...+. ..++..|...+...|++++|...+++++...
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23445556667789999999888654 22332 6678889999999999999999999987642
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 664 PKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 664 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
|.....|..++.+|...|++++|...+++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345899999999999999999999988754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.91 E-value=4.1e-05 Score=59.68 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=61.2
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
..+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 34555666666667777776666544 2223 577888888889999999999999999999999999999999988876
Q ss_pred cC
Q 004425 680 QG 681 (754)
Q Consensus 680 ~g 681 (754)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 54
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.5e-05 Score=64.32 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=65.7
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 619 EAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 619 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+|++.+++. ...| ++..|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555433 3334 6889999999999999999999999999999999999999999999999999999999998765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.89 E-value=6.3e-05 Score=58.66 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 630 SESPLLWRTLVSVSKLMAN---SKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 630 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
++|+..|..+..++...++ .++|..+++++++++|+++.+...++.++...|++++|...|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4578899999998876655 79999999999999999999999999999999999999999999977554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=8.3e-06 Score=69.85 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=67.0
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 613 RAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMAN----------SKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 613 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
+.+++++|++.+++. ...| ++..|..+..++...++ +++|+..++++++++|+++.+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445666777666644 2334 67777777777776655 46999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHhhCC
Q 004425 681 G-----------MLDEAAKVRTTMNDLR 697 (754)
Q Consensus 681 g-----------~~~~a~~~~~~m~~~~ 697 (754)
| ++++|...|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999887643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.2e-05 Score=82.51 Aligned_cols=114 Identities=12% Similarity=0.113 Sum_probs=85.5
Q ss_pred HhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhc-----cCCCCc---chHHH
Q 004425 611 LGRAGRLSEAMNLINSS---------PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLD-----LEPKDA---GSFIL 672 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~ 672 (754)
+..+|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ ..+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666666665432 23343 56788999999999999999999999987 345554 46889
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 004425 673 VSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMKL 742 (754)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 742 (754)
|+.+|..+|++++|+.++++..+...+ .-...||...++...|.+...++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987552111 1124799999999999988877664
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.6e-05 Score=78.55 Aligned_cols=114 Identities=9% Similarity=-0.061 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004425 565 DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSK 644 (754)
Q Consensus 565 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 644 (754)
...+..+...+.+.|++++|...|++.... .|+.. .+...|+.+++...+.. ..|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHHH
Confidence 345667777788888999999998887662 23221 12344555555544421 37888999999
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
..|++++|+..++++++++|++..+|..++.+|...|++++|...+++..+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00021 Score=60.88 Aligned_cols=111 Identities=8% Similarity=-0.083 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHH
Q 004425 580 LSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKL----MANSKFSILA 655 (754)
Q Consensus 580 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 655 (754)
++++|..+|++..+ .| .| ... |..+|...+.+++|.+++++.....++..+..|...+.. .+|.++|...
T Consensus 10 d~~~A~~~~~~aa~-~g-~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACE-LN-EM--FGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHH-TT-CT--THH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CC-CH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 45566666666655 23 11 122 556666666666666666655333566677777777766 6788888888
Q ss_pred HHHhhccCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 004425 656 SKRLLDLEPKDAGSFILVSNMYAG----QGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 656 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 698 (754)
++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888776 557788888888888 7888888888888776654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=5.2e-05 Score=78.49 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhc-----cCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCce
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLD-----LEPKDA---GSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGC 704 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 704 (754)
..+++.|+.+|...|++++|+..++++++ +.|+++ ..+..|+.+|..+|++++|+.++++..+.-.+
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~----- 403 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV----- 403 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----
Confidence 44566777777778888888888887775 234444 46889999999999999999999987552111
Q ss_pred eEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 004425 705 SWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMK 741 (754)
Q Consensus 705 s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 741 (754)
.-...||...+++..|.+...+|+
T Consensus 404 -------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 404 -------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp -------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred -------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 112479999999999999988886
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00056 Score=73.75 Aligned_cols=148 Identities=11% Similarity=0.008 Sum_probs=121.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCC----------HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHh
Q 004425 544 GLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGL----------SEGGICLFNEIEQIYGLRPILEHFACMVDLLG 612 (754)
Q Consensus 544 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 612 (754)
...++|++.+++++. +.|+.. .|+.--.++.+.|+ +++++++++.+.+. .+-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 346788999999999 678765 56666666666676 99999999999873 3345567888888888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc-------
Q 004425 613 RAG--RLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMA-NSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ------- 680 (754)
Q Consensus 613 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 680 (754)
+.| ++++|+++++++ ...| +..+|+.-..+....| ..+++.+.++++++.+|+|..+|..++.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999987 3334 7999999999998888 899999999999999999999999999998874
Q ss_pred -------CCchHHHHHHHHHhh
Q 004425 681 -------GMLDEAAKVRTTMND 695 (754)
Q Consensus 681 -------g~~~~a~~~~~~m~~ 695 (754)
++++++.+.+++.-.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 567888888776644
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00013 Score=59.38 Aligned_cols=66 Identities=6% Similarity=-0.064 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 631 ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
++...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356778899999999999999999999999999999999999999999999999999999987653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=6.6e-05 Score=77.48 Aligned_cols=85 Identities=15% Similarity=0.194 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhc-----cCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCce
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLD-----LEPKDA---GSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGC 704 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 704 (754)
..+++.|..+|...|++++|+.+++++++ +.|+++ ..|..|+.+|..+|++++|+.++++..+...+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~----- 414 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV----- 414 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-----
Confidence 45667777778888888888888887775 344444 46889999999999999999999887552111
Q ss_pred eEEEECCEEEEEecCCCCCCChHHHHHHHHH
Q 004425 705 SWIEIDSKLHHFVASGKDHPESEEIYSKLDL 735 (754)
Q Consensus 705 s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 735 (754)
.-...||...+++..|++
T Consensus 415 -------------~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 415 -------------AHGKDHPYISEIKQEIES 432 (433)
T ss_dssp -------------HTCTTCHHHHHHHHHHHC
T ss_pred -------------HcCCCChHHHHHHHHHhc
Confidence 112469988888877653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=8.2e-05 Score=63.68 Aligned_cols=101 Identities=8% Similarity=-0.117 Sum_probs=59.8
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHH
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSE 619 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 619 (754)
.+.+++++|++.+++..+ +.|+ ...|..+..++...++++.+....+ .+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~e 64 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQE 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHHH
Confidence 445667777777777777 4454 3466666666666655431111110 1234
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHhhccCCCCcch
Q 004425 620 AMNLINSS-PFSE-SPLLWRTLVSVSKLM-----------ANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 620 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
|+..|++. .+.| +...|..+..+|... |++++|+..|+++++++|++...
T Consensus 65 Ai~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 65 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 44444332 2233 345555555555544 58999999999999999997543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00031 Score=54.43 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4667888999999999999999999999999999999999999999999999999999998765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0013 Score=55.87 Aligned_cols=112 Identities=8% Similarity=-0.128 Sum_probs=90.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh----cCCHHH
Q 004425 544 GLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR----AGRLSE 619 (754)
Q Consensus 544 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 619 (754)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+ . -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 56788999999998877 33333 66677777888889999999877 3 356677788888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhccCC
Q 004425 620 AMNLINSSPFSESPLLWRTLVSVSKL----MANSKFSILASKRLLDLEP 664 (754)
Q Consensus 620 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 664 (754)
|.+++++.....++..+..|...+.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999877445678888889888888 7899999999999988743
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00028 Score=57.85 Aligned_cols=64 Identities=9% Similarity=0.027 Sum_probs=40.6
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
..+..++.+|.+.|++++|++.+++. ...| +...|..+..++...|+.++|...+++++++.|+
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 34445555555555555555555433 1223 4667777777777888888888888888887765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0018 Score=51.06 Aligned_cols=78 Identities=8% Similarity=0.094 Sum_probs=57.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCc
Q 004425 607 MVDLLGRAGRLSEAMNLINSS-PFSE-SPL-LWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGML 683 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 683 (754)
.+..+.+.|++++|++.+++. ...| +.. .|..+..++...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455666778888888777754 2234 567 88888889999999999999999999999998877632 445
Q ss_pred hHHHHHHHH
Q 004425 684 DEAAKVRTT 692 (754)
Q Consensus 684 ~~a~~~~~~ 692 (754)
.++...+++
T Consensus 78 ~~a~~~~~~ 86 (99)
T 2kc7_A 78 MDILNFYNK 86 (99)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 555555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0056 Score=60.34 Aligned_cols=141 Identities=20% Similarity=0.181 Sum_probs=79.5
Q ss_pred CChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc
Q 004425 528 RDIVSWNAMLSAYA--LHG---LGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL 601 (754)
Q Consensus 528 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 601 (754)
.+..+|...+.+.. ..+ ...+|..+|++.++ +.|+.. .+..+..++.. ....+ |..
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~--------------~~~~~--~~~ 253 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV--------------RHSQH--PLD 253 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--------------HHHHS--CCC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--------------HhccC--CCc
Confidence 35566666665433 333 35789999999998 678754 45444444431 00011 111
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINSSPF-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
... . . .+.+|.+-...+.. +.++.++..+.-.+...|++++|...++++++++|+ ...|..++.++.-.
T Consensus 254 ~~~--~-~------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~ 323 (372)
T 3ly7_A 254 EKQ--L-A------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMK 323 (372)
T ss_dssp HHH--H-H------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHT
T ss_pred hhh--H-H------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHC
Confidence 000 0 0 01222322223322 235666666666666667777777777777777764 55667777777777
Q ss_pred CCchHHHHHHHHHhhC
Q 004425 681 GMLDEAAKVRTTMNDL 696 (754)
Q Consensus 681 g~~~~a~~~~~~m~~~ 696 (754)
|++++|.+.+++....
T Consensus 324 G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 324 GMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 7777777777665443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0019 Score=51.20 Aligned_cols=63 Identities=19% Similarity=0.122 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 529 DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 529 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
+...|..+...|...|++++|+..|++.++ ..|+ ...|..+..++...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445666777777777777777777777776 3444 34666777777777777777777777655
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0011 Score=52.45 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=53.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCCcc-hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKDAG-SFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
....+...|++++|+..++++++.+|+++. .+..++.+|...|++++|...+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 456677889999999999999999999999 9999999999999999999999988664
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0026 Score=65.54 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=55.9
Q ss_pred HcCChHHHHHHHHHHHH---cCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc
Q 004425 542 LHGLGKGALLLFEEMKR---EGFAPDD----ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA 614 (754)
Q Consensus 542 ~~g~~~~A~~~~~~m~~---~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 614 (754)
..|++++|+.++++.++ .-+.|+. .+++.+..+|...|++++|..++++..+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-------------------- 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP-------------------- 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--------------------
Confidence 34566666666666553 2233443 24555555555566666665555554331
Q ss_pred CCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhc-----cCCCCcch
Q 004425 615 GRLSEAMNLINSS--PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLD-----LEPKDAGS 669 (754)
Q Consensus 615 g~~~~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 669 (754)
+++. +..|+ ...++.|...|...|++++|+.+++++++ +.|+++.+
T Consensus 370 ---------~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 370 ---------YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp ---------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred ---------HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 1111 23343 45567777777777888888888777776 35665544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0039 Score=52.68 Aligned_cols=65 Identities=9% Similarity=-0.096 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHhhccC-C-CCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 631 ESPLLWRTLVSVSKLMA---NSKFSILASKRLLDLE-P-KDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++..+...+..++.+.+ +.++|+.+++++++.+ | ++...++.|+-.|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 46666666666666665 5557777777777766 5 3466677777777777777777777776644
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0045 Score=63.91 Aligned_cols=106 Identities=8% Similarity=-0.051 Sum_probs=61.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 537 LSAYALHGLGKGALLLFEEMKRE---GFAPDD----ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
+..+.+.|++++|+.++++.++. -+.|+. .+++.+..+|...|++++|..+++++.+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i--------------- 358 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP--------------- 358 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---------------
Confidence 44455667777777777766642 123332 25566666666666666666666655431
Q ss_pred HHhhcCCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhc-----cCCCCcchHH
Q 004425 610 LLGRAGRLSEAMNLINSS--PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLD-----LEPKDAGSFI 671 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 671 (754)
+++. +..|+ ...++.|...+...|++++|+..++++++ +.|+++.+-.
T Consensus 359 --------------~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 359 --------------YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp --------------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred --------------HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 1111 23333 44566677777777777777777777765 4566655433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0064 Score=59.94 Aligned_cols=40 Identities=18% Similarity=-0.016 Sum_probs=35.0
Q ss_pred HhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 658 RLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 658 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
..+..+|.++.+|..++..+...|++++|...++++.+..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3456789999999999999998999999999999987765
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00034 Score=70.08 Aligned_cols=431 Identities=10% Similarity=0.044 Sum_probs=245.9
Q ss_pred ChhhhHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhcc
Q 004425 92 DTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSL 171 (754)
Q Consensus 92 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (754)
.+.+|..|-.++.+.+++.+|..-|= ...|+..|..+|....+.|.+++-+..+...++..- ++..=+.|+-++++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 34567777777777777777766543 344666777788888888888887777766655432 33444567777777
Q ss_pred CCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCC------------------------CCCcch
Q 004425 172 LEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLA------------------------YKDVRC 227 (754)
Q Consensus 172 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~ 227 (754)
.+++.+.++++. .||..-...+-+-|...|.++.|.-+|..+. ..++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 776655443322 3444444455556666666666666665553 136779
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcC-CCChhHHHHHHHHHH
Q 004425 228 VNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGV-VREISVGNAIVTMYG 306 (754)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~ 306 (754)
|-.+-.+|+..+.+.-|.-.--.+.- .......++..|-..|.+++-..+++.-. |+ .....+|+-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHH
Confidence 99999999999998877655444332 22233456666778888888888877655 33 346677888888887
Q ss_pred hcCChHHHHHHHHccC----CC-------CchhHHHHHHHHHhcCChhHHHHHHHHhHhc-----------C---cccCh
Q 004425 307 KHGMSEEAERMFDAIS----ER-------NLISWTALISGYVRSGHGGKAINGFLEFLDL-----------G---ICCDS 361 (754)
Q Consensus 307 ~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------g---~~p~~ 361 (754)
|- +.++..+-++..- -| ....|.-++-.|++..+++.|... |.+. . -..|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~ 350 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANV 350 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCS
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchH
Confidence 75 4555555444332 22 446788888888888888877543 2221 0 11233
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHH-HHHHHHhhh
Q 004425 362 SCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFN-AILSGFMEK 440 (754)
Q Consensus 362 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~ 440 (754)
..|-..|.-|....-. .-.+++.-+ ...+.. +..++.+.+.|.+.-....+..+...|....| ++-.-|..
T Consensus 351 EiyYKAi~FYL~e~P~-lL~DLL~vL-~prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE- 422 (624)
T 3lvg_A 351 ELYYRAIQFYLEFKPL-LLNDLLMVL-SPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT- 422 (624)
T ss_dssp HHHHHHHHHHTTSCCT-TSHHHHHHH-CTTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhChH-HHHHHHHhc-cccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh-
Confidence 3444444444332211 001111110 011111 12345566677777777777777666555444 33445555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004425 441 IADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQ 520 (754)
Q Consensus 441 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 520 (754)
..+++. ...-+..|-+-..+..|.++ .++ .-...-..-...|.+.++|+++..
T Consensus 423 -EEDy~~-------------------LR~SId~ydNFD~i~LA~rL----EkH---eL~eFRrIAA~LYkkn~rw~qsi~ 475 (624)
T 3lvg_A 423 -EEDYQA-------------------LRTSIDAYDNFDNISLAQRL----EKH---ELIEFRRIAAYLFKGNNRWKQSVE 475 (624)
T ss_dssp -TTCCHH-------------------HHHTTSSCCCSCTTHHHHHH----HTC---SSHHHHHHHHHHHHTTCHHHHHSS
T ss_pred -hhhHHH-------------------HHHHHHHhccccHHHHHHHH----hhC---chHHHHHHHHHHHHhcccHHHHHH
Confidence 444332 22222222222333322222 111 112222333556888888888887
Q ss_pred HHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004425 521 IFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICL 587 (754)
Q Consensus 521 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 587 (754)
+.++=. .|.-.|...+..|+.+-|.++++-..+.| +...|.+.+..|-..=++|-++++
T Consensus 476 l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 476 LCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp CSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 664321 12223344556788888888888887765 446677777777776666665544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.13 Score=58.47 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=77.5
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChH
Q 004425 468 SRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGK 547 (754)
Q Consensus 468 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 547 (754)
..++..+.+.|..+.|.++.+.. ..-......+|++++|.++.+.+ .+...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHH
Confidence 44555556666666665544211 11134456778888888887766 34578888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 548 GALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 548 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
.|++.|.++.+ |..+...+...|+.+...++-+.... .| .++.-..+|.+.|++++|++++.++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88888887654 33444444556665554444433333 11 1233344455566666666666554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0091 Score=47.52 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHH
Q 004425 631 ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVS 674 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 674 (754)
+...++..|..++.+.|+++.|...++++++++|++..+...+.
T Consensus 44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 35778889999999999999999999999999999987766654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.052 Score=61.86 Aligned_cols=166 Identities=17% Similarity=0.132 Sum_probs=98.8
Q ss_pred HhCCCHHHHHH-HHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHH
Q 004425 407 AKGGDLKSARM-LLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRS 485 (754)
Q Consensus 407 ~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 485 (754)
...+++++|.+ ++..++.. .....++..+.. .|..++|+++.+. |. .-.......|+++.|.+
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~--~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGK--DSLTKIARFLEG--QEYYEEALNISPD-------QD-----QKFELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHH--TTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHh--CCChHHheecCCC-------cc-----hheehhhhcCCHHHHHH
Confidence 34677777776 55443311 122455555555 7777777765421 11 11233456788888877
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 004425 486 LHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD 565 (754)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 565 (754)
+.+.+ .+...|..+.+++.+.|+++.|.+.|..+.. |..+...|...|+.+...++-+.....|-
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~~~~~---- 738 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAETTGK---- 738 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHHHTTC----
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHHHcCc----
Confidence 75432 4678899999999999999999998887654 33444445555665554444444333221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 004425 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSP 628 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (754)
+.....++.+.|++++|++ +|.+.+++++|..+-++..
T Consensus 739 --~~~A~~~~~~~g~~~~a~~-----------------------~~~~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 739 --FNLAFNAYWIAGDIQGAKD-----------------------LLIKSQRFSEAAFLGSTYG 776 (814)
T ss_dssp --HHHHHHHHHHHTCHHHHHH-----------------------HHHHTTCHHHHHHHHHHTT
T ss_pred --hHHHHHHHHHcCCHHHHHH-----------------------HHHHcCChHHHHHHHHHhC
Confidence 1222233444455555544 4556688999999998864
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0076 Score=56.81 Aligned_cols=71 Identities=7% Similarity=-0.036 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHh-----cCChHHHHHHHHHhhccCCCC-cchHHHHHHHHHhc-CCchHHHHHHHHHhhCCCccCCc
Q 004425 633 PLLWRTLVSVSKL-----MANSKFSILASKRLLDLEPKD-AGSFILVSNMYAGQ-GMLDEAAKVRTTMNDLRLSKEAG 703 (754)
Q Consensus 633 ~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~ 703 (754)
...|..|...|.. -|+.++|++.|+++++++|+. ..+++..++.|+.. |+.+++.+.+++.........|+
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 5567777777776 489999999999999999974 99999999999885 99999999999887766554344
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.24 Score=40.05 Aligned_cols=140 Identities=9% Similarity=0.013 Sum_probs=99.4
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHH
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 620 (754)
.-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 34577888888888877632 3445555665555555655566666665332222 246666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004425 621 MNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 621 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 699 (754)
...+-.++ -+......-+.....+|+.+.-..++..++.-+|-+++....++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66665553 244455666778889999999999999977766667999999999999999999999999999999986
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.036 Score=42.79 Aligned_cols=69 Identities=12% Similarity=0.006 Sum_probs=52.8
Q ss_pred CCCccHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 598 RPILEHFACMVDLLGRAGR---LSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 598 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
+.+...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..++++++.+|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3455667777777755444 68888888765 3445 57788888888999999999999999999999983
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.24 Score=46.70 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=77.9
Q ss_pred cCCHHHHHHHHhccCCCCh--hHHHHHHH-HHHHc--CC------hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 004425 512 CGSIDGAFQIFKGISDRDI--VSWNAMLS-AYALH--GL------GKGALLLFEEMKREGFAPD---DISILGVLQACIY 577 (754)
Q Consensus 512 ~g~~~~A~~~~~~~~~~~~--~~~~~li~-~~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~ 577 (754)
.|+..+-.+.+......++ ..|..++. .+... |+ ..+|..++++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 4444555556666654444 46776654 33332 32 4677888888888 6787 3578888888888
Q ss_pred -----cCCHHHHHHHHHHHHHHhCCCC--CccHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 004425 578 -----SGLSEGGICLFNEIEQIYGLRP--ILEHFACMVDLLGRA-GRLSEAMNLINSS 627 (754)
Q Consensus 578 -----~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 627 (754)
.|+.++|.++|++..+ +.| +..++..+.+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4899999999999976 455 377788888888884 8888888888765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.79 Score=39.69 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=81.7
Q ss_pred HHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004425 507 TMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGIC 586 (754)
Q Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 586 (754)
+....+|+++.|.++.+.+ .+...|..|......+|+++-|.+.|++..+ |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456778888888887766 4567788888888888888888888887554 4455555666677666555
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 004425 587 LFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRL 659 (754)
Q Consensus 587 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 659 (754)
+-+.... .| -++.-...+.-.|+++++.+++.+.+.-|.. .-..+.+|-.+.|.++.+++
T Consensus 82 la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 5444433 12 1444445556678888888888776432211 11123456666666665544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=2.7 Score=45.19 Aligned_cols=113 Identities=7% Similarity=-0.048 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHH
Q 004425 545 LGKGALLLFEEMKREGFAPDDISILG----VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 545 ~~~~A~~~~~~m~~~g~~p~~~t~~~----ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 620 (754)
+.+.|..+|....+.. ..+...... +.......+...++...+..... ...+.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 6677777777765432 222222222 22222233324455555555433 122222233333344466777777
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 621 MNLINSSPFSE--SPLLWRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 621 ~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
.+.|+.|+..+ .....--+..+....|+.++|...++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777775433 222222344455667777777777777764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.036 Score=46.74 Aligned_cols=41 Identities=15% Similarity=0.017 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
...+-.|.-++.+.|++++|.+.++++++++|+|..+....
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 45566777788999999999999999999999976655443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.04 Score=60.21 Aligned_cols=59 Identities=8% Similarity=-0.005 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 636 WRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 636 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
...-...|...|+++.|+.+++++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33445677788999999999999999999999999999999999999999999999885
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0057 Score=61.52 Aligned_cols=238 Identities=13% Similarity=0.087 Sum_probs=162.4
Q ss_pred cHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 004425 193 NVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYE 272 (754)
Q Consensus 193 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 272 (754)
.+.+|+.|-.+..+.|.+.+|++-|= +..|...|..+|....+.|.+++-+..+...++.. + +...=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-k-e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-R-ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-C-STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-c-ccccHHHHHHHHHh
Confidence 45577778888888888888876653 34567778888999999999999888877665542 2 44445678888888
Q ss_pred cCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC------------------------CCchh
Q 004425 273 NLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE------------------------RNLIS 328 (754)
Q Consensus 273 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 328 (754)
.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888766544432 35666666777778888888888777776542 46788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 004425 329 WTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAK 408 (754)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 408 (754)
|..+-.+|...+.+.-|.-.--.++ ........++.-|-..|.+++-..+++..... -.....+++-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh
Confidence 9999999999998876654333322 22223344566678888888888777766521 14567788888888887
Q ss_pred CCCHHHHHHHHh----cCCCC-------ChhhHHHHHHHHhhhhcCCHHHHHH
Q 004425 409 GGDLKSARMLLD----GFSCK-------YTAEFNAILSGFMEKIADDEEDVMV 450 (754)
Q Consensus 409 ~g~~~~A~~~~~----~~~~~-------~~~~~~~li~~~~~~~~~~~~~A~~ 450 (754)
- +.++..+-++ ++--| ....|.-++--|++ ..+++.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~--ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK--YEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHH--HTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhc--chhHHHHHH
Confidence 5 3444444333 23222 34468888888888 888887653
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.077 Score=42.97 Aligned_cols=69 Identities=12% Similarity=-0.042 Sum_probs=29.2
Q ss_pred CCccHHHHHHHHHhhcCCHHH---HHHHHHhCCC-C-C--CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 599 PILEHFACMVDLLGRAGRLSE---AMNLINSSPF-S-E--SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 599 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
++..+-..++.+|.+..+..+ ++.++++.-. . | .....-.|.-++.+.|++++|.+.++.+++.+|+|.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 444444444555555444333 4444443311 1 1 112222333344444455555555555555555443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.59 Score=38.50 Aligned_cols=66 Identities=5% Similarity=-0.072 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHhhccCCC-CcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 630 SESPLLWRTLVSVSKLMA---NSKFSILASKRLLDLEPK-DAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 630 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.|++.+-..+..++.+.. +..+++.+++.++...|. .-...+.|+-.+.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455556566666665554 345677777777776664 344566677777777777777777776654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.8 Score=39.66 Aligned_cols=100 Identities=11% Similarity=0.018 Sum_probs=49.1
Q ss_pred HHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHH
Q 004425 305 YGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLH 384 (754)
Q Consensus 305 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 384 (754)
...+|+++.|.++.+.+ .+...|..+.......|+++-|...|.+..+ +..+.--|...|+.+.-.++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34556666666665554 3445566666666666666666666655432 233333344445554444444
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhc
Q 004425 385 GFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDG 421 (754)
Q Consensus 385 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 421 (754)
+.....| -++.-...+.-.|+++++.++|.+
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4333333 122223333344555555555543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.15 Score=40.26 Aligned_cols=64 Identities=17% Similarity=0.018 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhccC-------CCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLLDLE-------PKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++.-...++..+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|...+++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445567788888888888888888888753 23456899999999999999999999998765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.95 E-value=0.51 Score=38.16 Aligned_cols=85 Identities=11% Similarity=-0.019 Sum_probs=49.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHhCCCC--CccHHHHHHHHHhhcCCHH
Q 004425 544 GLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEG---GICLFNEIEQIYGLRP--ILEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 544 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 618 (754)
.....+.+-|.+....|. |+..+-..+..++.+...... ++.+++.+... -.| ..+..-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHH
Confidence 344455555555555443 555565666667776665544 66777666441 113 2334446666777777777
Q ss_pred HHHHHHHhC-CCCC
Q 004425 619 EAMNLINSS-PFSE 631 (754)
Q Consensus 619 ~A~~~~~~~-~~~p 631 (754)
+|.++++.+ ..+|
T Consensus 92 ~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 92 KALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCC
Confidence 777777655 3344
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.27 E-value=0.51 Score=39.19 Aligned_cols=54 Identities=7% Similarity=0.010 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc
Q 004425 615 GRLSEAMNLINSS-P-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 615 g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
++.++|.++|+.+ . .+.=..+|......-.++|++..|.+++.+++.+.|.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 5555666655543 0 1111778888888888899999999999999998888543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.79 E-value=15 Score=41.18 Aligned_cols=263 Identities=10% Similarity=-0.025 Sum_probs=133.4
Q ss_pred HHHhcCChHHHHHHHHccCCC----Cc--hhHHHHHHHHHhcCChhHHHHHHHHhHhcCc-------ccChh--hHHHHH
Q 004425 304 MYGKHGMSEEAERMFDAISER----NL--ISWTALISGYVRSGHGGKAINGFLEFLDLGI-------CCDSS--CLATVI 368 (754)
Q Consensus 304 ~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~--~~~~ll 368 (754)
+....|+.++++.+++..... +. ..-..+.-+....|..+++..++...+...- .+... ....|-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 355678888888888776541 21 2223344456667776778877777654321 01111 111222
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCcchh--HHHHHHHHHHhCCCHHHHHHHHhcCC-CCChhh--HHHHHHHHhhhhcC
Q 004425 369 DGCSVCSNLELGLQLHGFAIKHGYLSDVR--LGTALVDIYAKGGDLKSARMLLDGFS-CKYTAE--FNAILSGFMEKIAD 443 (754)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~--~~~li~~~~~~~~~ 443 (754)
.++...++ +.+.+.+..++...- .... ..-+|...|.-.|+.+....++..+. ..+... .-++.-|+.. .|
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~--~g 538 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALIN--YG 538 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhh--CC
Confidence 22333444 344444444444221 1111 11223333445666666666665443 122222 2223334555 78
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004425 444 DEEDVMVLFSQQRLAGMEPDPVTFS---RLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQ 520 (754)
Q Consensus 444 ~~~~A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 520 (754)
+.+.+..+.+.+... ..|.. -|. .+.-+|+..|+.....+++..+.... ..++.-...+.-++...|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~-~dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhC-CCHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 888888888877763 12222 222 33446778888888887888887642 2223222222233444677666777
Q ss_pred HHhccCC-CChhHHH--HHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004425 521 IFKGISD-RDIVSWN--AMLSAYALHGLG-KGALLLFEEMKREGFAPDDISILGVLQACI 576 (754)
Q Consensus 521 ~~~~~~~-~~~~~~~--~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 576 (754)
+++.+.+ .|...-. .+.-+....|.. .+++.++..+.. .+|..+-...+.++.
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 7765542 3443332 233344444443 678888888874 345544333333333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.42 E-value=0.61 Score=37.90 Aligned_cols=65 Identities=5% Similarity=-0.081 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHhhccCCC-CcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 631 ESPLLWRTLVSVSKLMA---NSKFSILASKRLLDLEPK-DAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
|++.+-..+..++.+.. +..+|+.+++.++..+|. .-..+..|+-.+.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44555555555554443 334566666666666653 344566666666666777776666665543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.06 E-value=8.8 Score=36.86 Aligned_cols=169 Identities=13% Similarity=0.093 Sum_probs=103.6
Q ss_pred HHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHH----HHHhHHCCCCCCcchHHHHHHHH
Q 004425 195 FVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHV----FVHLLSSDFEPNDYTFTNVISVC 270 (754)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~ 270 (754)
..|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+.+.+.++++|......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3566777888899999999988642 23455667777665554 55566678888888888888777
Q ss_pred hccCCc-hHHHHHHHHHHH----hcC--CCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhc---C
Q 004425 271 YENLGV-EEGKQLHGLAVK----FGV--VREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRS---G 340 (754)
Q Consensus 271 ~~~~~~-~~a~~~~~~~~~----~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g 340 (754)
.....- ..-.++++.+++ .|- .-|+.....+...|.+.|++.+|+..|-.-...|...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 653321 123444555544 332 237788889999999999999999887633222444555444443333 4
Q ss_pred ChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 004425 341 HGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIK 389 (754)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 389 (754)
...++-- ..-..+ --|...+++..|..+++...+
T Consensus 183 ~~~e~dl--------------f~~RaV-L~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAE--------------FFSRLV-FNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHH--------------HHHHHH-HHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHH--------------HHHHHH-HHHHHhcCHHHHHHHHHHHHH
Confidence 3333211 111112 224456778888777776554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.50 E-value=1.5 Score=37.22 Aligned_cols=112 Identities=7% Similarity=-0.048 Sum_probs=53.9
Q ss_pred HHHHHhcCCHHHHHHHHhccC-----CCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH-HHHHH
Q 004425 506 ITMYAKCGSIDGAFQIFKGIS-----DRDI-------VSWNAMLSAYALHGLGKGALLLFEEMKREG-FAPDDI-SILGV 571 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-t~~~l 571 (754)
+..+...|.++.|+-+.+.+. .+++ .+...+.+++...|++.+|...|++.++.. .-+... +...+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 455566666776666665542 2332 133445566666666666666666654311 111111 10000
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 004425 572 LQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSE 631 (754)
Q Consensus 572 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 631 (754)
. ....... . ....++.+.---+..+|.+.|++++|+..++.+|.+-
T Consensus 107 ~----~~ss~p~---------s-~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 107 G----NSASTPQ---------S-QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred c----ccCCCcc---------c-ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 0 0000000 0 1122233444457778888888888888888876543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.43 E-value=17 Score=37.20 Aligned_cols=50 Identities=10% Similarity=-0.026 Sum_probs=33.0
Q ss_pred CChhHHHHHHHHHHhC-----CCCCChhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 004425 138 GDYESVLGIACDMYRS-----EEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIK 187 (754)
Q Consensus 138 ~~~~~a~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 187 (754)
|+++.|++.+-.+.+. ...-.......+++.|...++++.....+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6788888877665432 2333455677778888888888877666665544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.34 E-value=0.51 Score=39.23 Aligned_cols=108 Identities=10% Similarity=-0.020 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 004425 564 DDISILGVLQACIYSGLS------EGGICLFNEIEQIYGLRPILE-HFACMVDLLGRAGRLSEAMNLINSSPFSESPLLW 636 (754)
Q Consensus 564 ~~~t~~~ll~a~~~~g~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 636 (754)
|..+|...+....+.|+. ++.+++|++... .++|+.. .+...+. .|
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~-------------------------LW 64 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFAR-------------------------IQ 64 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHH-------------------------HH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHH-------------------------HH
Confidence 445777777777777777 677777777666 4555421 1111111 12
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004425 637 RTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 637 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 699 (754)
--++.. ...+|.++|..+|+.++++...-+..|...+..-.++|+...|.+++.+....+.+
T Consensus 65 IrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 65 VRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 111111 23379999999999999886666778888888899999999999999988776654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=90.19 E-value=6.6 Score=31.96 Aligned_cols=137 Identities=9% Similarity=-0.033 Sum_probs=76.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
.|..++..++..+.... .+..-|+-++--....-+-+...+.++.+-+. .|. .+||++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 67777777777776653 23344444544444444444444444443221 111 233343333333
Q ss_pred HhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 004425 522 FKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGL 597 (754)
Q Consensus 522 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 597 (754)
+-.+.. +....+.-++.+...|+-++-.+++.++.. +.+|+...+..+..||.+.|+..+|.+++.++.+ .|+
T Consensus 84 ~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~-kG~ 156 (172)
T 1wy6_A 84 GVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK-KGE 156 (172)
T ss_dssp HHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTC
T ss_pred HHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH-hhh
Confidence 333322 222344455666777777777777777533 2556677777777788888888888877777776 355
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.79 E-value=15 Score=35.36 Aligned_cols=109 Identities=12% Similarity=0.045 Sum_probs=69.2
Q ss_pred HHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHH----HHHhHhcCcccChhhHHHHHHHhcccCC
Q 004425 301 IVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAING----FLEFLDLGICCDSSCLATVIDGCSVCSN 376 (754)
Q Consensus 301 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 376 (754)
+..=|.+.+++++|.+++..- ...+.+.|+...|.++ .+-..+.+++++......++..+.....
T Consensus 39 l~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~ 107 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDP 107 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 334477788888888876432 3345666776665554 4444556788888877777776655322
Q ss_pred hH-HHHHHHHHHHH----hC--CCcchhHHHHHHHHHHhCCCHHHHHHHHh
Q 004425 377 LE-LGLQLHGFAIK----HG--YLSDVRLGTALVDIYAKGGDLKSARMLLD 420 (754)
Q Consensus 377 ~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (754)
-+ .=.++.+.+++ .| ..-|+.....+...|.+.|++.+|+.-|-
T Consensus 108 ~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 108 SEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 11 12345555554 22 22467788888888999999999888765
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.29 E-value=2.6 Score=35.85 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=60.0
Q ss_pred CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 004425 560 GFAPDDI--SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL-------EHFACMVDLLGRAGRLSEAMNLINSS--- 627 (754)
Q Consensus 560 g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~--- 627 (754)
|+.|... ++..-+..+...|.++.|+-+.+.+....+..|++ .++..+++++...|++.+|...|++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4445433 44455566667777777777666655433333442 24556677777777777777776542
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 628 ----PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 628 ----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
+..+.. ..++. .... ...-..+ +.+.+.-+.++.+|.+.|++++|+.+++..
T Consensus 93 ~k~l~k~~s~--~~~~~----~~ss-------~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKV--RPSTG----NSAS-------TPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCc--ccccc----ccCC-------Ccccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111111 00000 0000 0000111 233456677888888888888888888765
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.84 E-value=34 Score=38.38 Aligned_cols=250 Identities=9% Similarity=-0.089 Sum_probs=129.3
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCC----Chh-hHHH-HHHHHhhhhcCCHHHHHHHHHHHHHcCC--C-----CCHHHHHH
Q 004425 403 VDIYAKGGDLKSARMLLDGFSCK----YTA-EFNA-ILSGFMEKIADDEEDVMVLFSQQRLAGM--E-----PDPVTFSR 469 (754)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~-li~~~~~~~~~~~~~A~~~~~~m~~~g~--~-----p~~~~~~~ 469 (754)
--+....|+.+++..+++..... +.. -..+ +.-|.+. .|..++++.++.......- . +....-..
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~--ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAa 458 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIY--AGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGAS 458 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHT--TTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHcCccccccccccHHHHHHHH
Confidence 34456788888899998877642 222 1222 2335556 6665678887777665321 0 11111222
Q ss_pred HHHHHhcccc-hHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhccCC-CChhHH--HHHHHHHHHc
Q 004425 470 LLSLSASQAC-LVRGRSLHAYSIKTGYAADV--IVGNALITMYAKCGSIDGAFQIFKGISD-RDIVSW--NAMLSAYALH 543 (754)
Q Consensus 470 ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~~li~~~~~~ 543 (754)
+--+.+-.|. -+++...+..+....- ... ...-+|...|.-.|+-+....++..+.+ .+.... -.+.-++...
T Consensus 459 LGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 459 LGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC
Confidence 2223333332 2344455555444221 111 1112233344556777776776665432 222222 2333445577
Q ss_pred CChHHHHHHHHHHHHcCCCCCH-HHHH---HHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHH
Q 004425 544 GLGKGALLLFEEMKREGFAPDD-ISIL---GVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSE 619 (754)
Q Consensus 544 g~~~~A~~~~~~m~~~g~~p~~-~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 619 (754)
|+.+.+..+++.+... .|. .-|. .+.-+|+..|+.....+++..+..+ ...++.....+.-++.-.|+.+.
T Consensus 538 g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 538 GRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSS
T ss_pred CChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHH
Confidence 8888888888888762 233 2333 3444677888987777788888762 22233333333334444666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh--cCCh-HHHHHHHHHhh
Q 004425 620 AMNLINSSPFSESPLLWRTLVSVSKL--MANS-KFSILASKRLL 660 (754)
Q Consensus 620 A~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~-~~a~~~~~~~~ 660 (754)
+.++++.+....|+.+-....-+... .|+. .++...+.++.
T Consensus 613 v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 66666644333455554443333322 3332 55666666665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.18 E-value=1 Score=45.48 Aligned_cols=60 Identities=8% Similarity=-0.030 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 636 WRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 636 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
...++.++...|+.+++...+++++..+|-+...|..|..+|.+.|+..+|.+.|+..+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667778889999999999999999999999999999999999999999999888753
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.24 E-value=22 Score=34.36 Aligned_cols=168 Identities=11% Similarity=0.073 Sum_probs=101.7
Q ss_pred HHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHH----HHhHHCCCCCCcchHHHHHHHHh
Q 004425 196 VGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVF----VHLLSSDFEPNDYTFTNVISVCY 271 (754)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 271 (754)
+|.++..-|.+.+++++|++++-. -...+.+.|+...|.++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 556677778899999999987632 234566677766555544 55566788888888888888776
Q ss_pred ccCCch-HHHHHHHHHHH----hc--CCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhH
Q 004425 272 ENLGVE-EGKQLHGLAVK----FG--VVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGK 344 (754)
Q Consensus 272 ~~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 344 (754)
....-+ .-..+.+.+++ .| -.-|......+...|.+.+++.+|+.-|-.-.++....+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655322 22334444443 34 233677888889999999999999988843222223555444444433332222
Q ss_pred HHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 004425 345 AINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIK 389 (754)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 389 (754)
+ |.+.-..+ --|...+++..|..+++...+
T Consensus 186 ~--------------dlfiaRaV-L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 A--------------PLYCARAV-LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H--------------HHHHHHHH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHH-HHHHHhCCHHHHHHHHHHHHH
Confidence 2 11122222 234556677777777665554
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=87.13 E-value=36 Score=36.65 Aligned_cols=18 Identities=6% Similarity=-0.091 Sum_probs=15.5
Q ss_pred HHhcCCchHHHHHHHHHh
Q 004425 677 YAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 677 ~~~~g~~~~a~~~~~~m~ 694 (754)
+.+.|+|++|.+.++++.
T Consensus 548 ~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHTTCHHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 488999999999998764
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.10 E-value=22 Score=35.47 Aligned_cols=128 Identities=13% Similarity=0.010 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcC-CHHHHHHHHhccCC---CChhHH----
Q 004425 466 TFSRLLSLSASQACLVRGRSLHAYSIKT-GYAA---DVIVGNALITMYAKCG-SIDGAFQIFKGISD---RDIVSW---- 533 (754)
Q Consensus 466 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~---- 533 (754)
....+...|.+.|+.++..+++...... +.-+ .......+++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666555554321 0011 2233445555554432 22222222222211 111122
Q ss_pred --HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 534 --NAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-----SILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 534 --~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
.-++..|...|++.+|.+++.++.+.=-+.|.. .+..-+..|...+++.++...+.....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 135556666666666666666665421111211 233334455566666666666655543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.62 E-value=34 Score=34.97 Aligned_cols=186 Identities=12% Similarity=0.079 Sum_probs=114.1
Q ss_pred cCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHh-CCCCchh--HHHHHHHHHHhcC
Q 004425 442 ADDEEDVMVLFSQQRLA-----GMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKT-GYAADVI--VGNALITMYAKCG 513 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~li~~~~~~g 513 (754)
.+++++|++.+..+.+. ...........++..|...++++...+.+..+.+. |...... ..+.++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 35566676666555432 23334456677778888888888777766665543 3222211 1122233333333
Q ss_pred C--HHHHHHHHhccCC---C-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHH
Q 004425 514 S--IDGAFQIFKGISD---R-------DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-D----ISILGVLQACI 576 (754)
Q Consensus 514 ~--~~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~ 576 (754)
. .+.-..+.+.... . .......|...|...|++.+|..+++++...-...+ . ..+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2 2223334443321 1 112345678889999999999999999874322222 2 25666777899
Q ss_pred hcCCHHHHHHHHHHHHHH-hCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 577 YSGLSEGGICLFNEIEQI-YGLRPI----LEHFACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 577 ~~g~~~~a~~~~~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
..+++.+|..+++++... ....+. ...+.+++..+...+++.+|-..|.++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999987532 222222 246779999999999999998877654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.56 E-value=27 Score=33.75 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=84.2
Q ss_pred hhHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChhHHHHHH----HHHHhCCCCCChhhHHHHHHHhc
Q 004425 95 EANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIA----CDMYRSEEKFNEHTCSVILEACS 170 (754)
Q Consensus 95 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 170 (754)
.|.++..-|.+.+++++|.+++-. -...+.+.|....|-++- +...+.++++|..+...|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456677778899999999997643 234556667776665544 55667888999888888887777
Q ss_pred cCCCh-----HHHHHHHHHHHHHC--CCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcC
Q 004425 171 LLEDR-----IFGEQIHAFAIKSG--FENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAG 239 (754)
Q Consensus 171 ~~~~~-----~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 239 (754)
....- ....+...+-.+.| -.-|+.....+-..|.+.+++.+|+.-|=.-.......|..++-.+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 55432 12223333333444 23467777788888888888888888774212112245544444444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.06 E-value=5.2 Score=40.31 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HhCCCCCccHHH
Q 004425 534 NAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQ----IYGLRPILEHFA 605 (754)
Q Consensus 534 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~ 605 (754)
..++..+...|++++|+..++.+.. ..| +...+..++.++.+.|+..+|.+.|+.+.. ++|+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3456777788888888888888876 445 566888888888888888888888887544 458888765543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.01 E-value=15 Score=30.32 Aligned_cols=39 Identities=10% Similarity=-0.065 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
...--|.-++.+.|++++|.+..+.+++.+|+|..+..+
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 344456678889999999999999999999997655443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.00 E-value=5.6 Score=30.33 Aligned_cols=63 Identities=13% Similarity=-0.000 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHH
Q 004425 139 DYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLIS 202 (754)
Q Consensus 139 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 202 (754)
+.-+..+-++.+....+.|++....+.|++|.+.+|+..|.++++-++..- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 455677778888888889999999999999999999999999888876543 233446666554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.80 E-value=16 Score=39.97 Aligned_cols=51 Identities=18% Similarity=0.034 Sum_probs=40.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004425 539 AYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEI 591 (754)
Q Consensus 539 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 591 (754)
-+...|+++-|+++-++... ..|+. .||..|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35567888888888888877 66765 48888888888888888888777765
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.09 E-value=3.2 Score=33.68 Aligned_cols=39 Identities=8% Similarity=-0.106 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHH
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFI 671 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 671 (754)
...+--|.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 344555666777888888888888888888888765443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.23 E-value=11 Score=28.69 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 546 GKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 546 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
.-+..+-++.+....+-|+.....+.|.||.+.+++.-|.++|+.++.+.|-. ..+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 44556666777777889999999999999999999999999999998854433 445665554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.46 E-value=16 Score=27.75 Aligned_cols=78 Identities=14% Similarity=-0.022 Sum_probs=55.4
Q ss_pred ChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHH
Q 004425 174 DRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLS 253 (754)
Q Consensus 174 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (754)
.-++|..+-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||...|-++-. .+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666666665553 33344444566778899999999999999999999887755 367777777777777776
Q ss_pred CC
Q 004425 254 SD 255 (754)
Q Consensus 254 ~g 255 (754)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 65
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.20 E-value=16 Score=27.70 Aligned_cols=78 Identities=17% Similarity=0.023 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHH
Q 004425 174 DRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLS 253 (754)
Q Consensus 174 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (754)
.-++|..+-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||...|-++-.. +.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45566666666665553 333444445667788999999999999999999998877554 56666777776667766
Q ss_pred CC
Q 004425 254 SD 255 (754)
Q Consensus 254 ~g 255 (754)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=80.03 E-value=19 Score=33.85 Aligned_cols=49 Identities=8% Similarity=0.096 Sum_probs=26.1
Q ss_pred hccCCchHHHHHHHHHHHhcCCCChhH--HHHHHHHHHhcCChHHHHHHHH
Q 004425 271 YENLGVEEGKQLHGLAVKFGVVREISV--GNAIVTMYGKHGMSEEAERMFD 319 (754)
Q Consensus 271 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 319 (754)
+..++.....++.+.+.+.|..++... ..+.+...++.|+.+-+..+++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344555555566666677666554321 2233444555666666655555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 754 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.51 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.1 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.09 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.06 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.04 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.03 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.02 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.99 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.92 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.83 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.7 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.65 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.65 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.58 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.55 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.49 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.49 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.46 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.45 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.43 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.4 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.36 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.34 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.32 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.3 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.23 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.17 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.16 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.13 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.06 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.89 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.84 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.83 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.79 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.77 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.75 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.73 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.68 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.65 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.63 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.58 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.35 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.35 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.33 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.23 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.22 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.63 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.25 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.82 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.92 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.08 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.82 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 89.45 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 86.44 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.76 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.7e-20 Score=192.09 Aligned_cols=372 Identities=11% Similarity=0.031 Sum_probs=261.4
Q ss_pred HHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC--C-CchhHHHHHHHHHhcCChhH
Q 004425 268 SVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE--R-NLISWTALISGYVRSGHGGK 344 (754)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~ 344 (754)
..+.+.|++++|.+.++.+++.. +.+..++..+...|.+.|++++|...|++..+ | +..+|..+...|.+.|++++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence 44556666777777666666542 23455556666666666666666666665542 2 34455556666666666666
Q ss_pred HHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCC
Q 004425 345 AINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSC 424 (754)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 424 (754)
|+..+....+.... +..............+............... ..
T Consensus 86 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~ 132 (388)
T d1w3ba_ 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQY--------------------------------NP 132 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------------------------------CT
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccc--------------------------------cc
Confidence 66666655543211 1111111111111112222222111111111 12
Q ss_pred CChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHH
Q 004425 425 KYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPD-PVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGN 503 (754)
Q Consensus 425 ~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 503 (754)
.....+......... .+....+...+...... .|+ ...+..+...+...|+.+.|...+..+.+.. +-+...+.
T Consensus 133 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 207 (388)
T d1w3ba_ 133 DLYCVRSDLGNLLKA--LGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI 207 (388)
T ss_dssp TCTHHHHHHHHHHHT--TSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccccccccccccccc--cchhhhhHHHHHHhhcc--CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHH
Confidence 222233333344444 67777777777776654 343 4566777778888889999999888888764 34567788
Q ss_pred HHHHHHHhcCCHHHHHHHHhccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC
Q 004425 504 ALITMYAKCGSIDGAFQIFKGIS---DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSG 579 (754)
Q Consensus 504 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 579 (754)
.+...|...|++++|...|+... ..+...|..+...+.+.|++++|+..|++.++ +.|+. .++..+..++...|
T Consensus 208 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~ 285 (388)
T d1w3ba_ 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHS
T ss_pred HHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 88999999999999999998764 35567788899999999999999999999998 56764 58888999999999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 004425 580 LSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASK 657 (754)
Q Consensus 580 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 657 (754)
++++|.+.++.... ..+.+...+..++.++.+.|++++|++.+++. ...| ++.+|..+..++...|++++|+..++
T Consensus 286 ~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 286 SVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999877 34556678889999999999999999999875 5556 58889999999999999999999999
Q ss_pred HhhccCCCCcchHHHHHHHHHhcCC
Q 004425 658 RLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 658 ~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
++++++|+++.+|..|+++|.+.|+
T Consensus 364 ~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 364 EAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999885
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.8e-19 Score=185.72 Aligned_cols=351 Identities=13% Similarity=0.079 Sum_probs=253.1
Q ss_pred HHHhcCChhHHHHHHHHhHhcCccc-ChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHH
Q 004425 335 GYVRSGHGGKAINGFLEFLDLGICC-DSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLK 413 (754)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 413 (754)
.+.+.|++++|++.|+++.+. .| +...+..+...+...|++++|...++.+++.. +.+...+..+...|.+.|+++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 344455555555555555543 22 23344444455555555555555555555543 223455566666666666666
Q ss_pred HHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHH
Q 004425 414 SARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYS 490 (754)
Q Consensus 414 ~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 490 (754)
+|...+.... ..+...+......... .+....+........... .................+....+...+...
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVA--AGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc--cccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 6666666554 2222233333333333 444455555554444433 333344445555666777777787777777
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 004425 491 IKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDIS 567 (754)
Q Consensus 491 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 567 (754)
.... +.+...+..+...+...|++++|...++...+ .+..+|..+...+...|++++|+..+++....+ ..+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 7654 44567788889999999999999999987643 456789999999999999999999999998843 224567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 004425 568 ILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVSVSKL 645 (754)
Q Consensus 568 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 645 (754)
+..+...+.+.|++++|...|+++.+ -.+-+...+..++.+|...|++++|++.++.. ..+.+...+..+...+..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 88888999999999999999999976 22334678889999999999999999999865 233478899999999999
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 646 MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1e-13 Score=138.24 Aligned_cols=223 Identities=15% Similarity=0.116 Sum_probs=148.4
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 004425 435 SGFMEKIADDEEDVMVLFSQQRLAGMEPD-PVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCG 513 (754)
Q Consensus 435 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 513 (754)
..+.+ .|++++|+..|++..+. .|+ ..+|..+..++...|+++.|...+.++.+.. +-+..
T Consensus 27 ~~~~~--~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~------------- 88 (323)
T d1fcha_ 27 LRRLQ--EGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQT------------- 88 (323)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-------------
T ss_pred HHHHH--cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccc-------------
Confidence 34455 66666666666666654 333 3344445555555555555555555554432 22333
Q ss_pred CHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----------------HHHHHHHHHHh
Q 004425 514 SIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI----------------SILGVLQACIY 577 (754)
Q Consensus 514 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------t~~~ll~a~~~ 577 (754)
.|..+...|...|++++|++.+++... +.|+.. .....+..+..
T Consensus 89 ------------------~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (323)
T d1fcha_ 89 ------------------ALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 148 (323)
T ss_dssp ------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHHHHH
T ss_pred ------------------ccccccccccccccccccccchhhHHH--hccchHHHHHhhhhhhhhcccccchhhHHHHHH
Confidence 444444445555555555555555444 222211 11112223444
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILA 655 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 655 (754)
.+.+++|...|.+..+...-.++...+..++.++...|++++|++.+++. ...| ++.+|..++..+...|++++|+..
T Consensus 149 ~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 228 (323)
T d1fcha_ 149 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 228 (323)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHH
Confidence 56677888888887663333344567788889999999999999998865 3334 688999999999999999999999
Q ss_pred HHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 656 SKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 656 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++++++++|+++.+|..+|.+|...|++++|...+++..+
T Consensus 229 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 229 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=8.5e-13 Score=131.34 Aligned_cols=265 Identities=11% Similarity=-0.007 Sum_probs=192.8
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 004425 401 ALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPD-PVTFSRLLSLSAS 476 (754)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 476 (754)
-....+.+.|++++|...|+++. +.+...|..+...|.. .|++++|+..|.+..+. .|+ ...+..+...+..
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~--~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE--NEQELLAISALRRCLEL--KPDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCChHHHHHHHHhhhcc--ccccccccccccccccc
Confidence 35667889999999999999875 4466789999999999 99999999999999876 444 4677788888999
Q ss_pred ccchHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004425 477 QACLVRGRSLHAYSIKTGYAADVIV-GNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEE 555 (754)
Q Consensus 477 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 555 (754)
.|++++|.+.+..+.... |+... ........ ...+.......+..+...+.+.+|...|++
T Consensus 100 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhc--cchHHHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 999999999999987753 22111 00000000 000111111122334455677888888888
Q ss_pred HHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 004425 556 MKREGFA-PDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-S 632 (754)
Q Consensus 556 m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 632 (754)
.++.... ++...+..+...+...|++++|+..|++.... .+-+...|..++.+|.+.|++++|++.+++. ...| +
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 8873322 24457778888899999999999999998762 2234667888999999999999999999865 3345 6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch-----------HHHHHHHHHhcCCchHHHHH
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS-----------FILVSNMYAGQGMLDEAAKV 689 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~~~ 689 (754)
+.+|..++.+|...|++++|+..++++++++|++... |..+..++...|+++.+...
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899999999999999999999999999999987653 45567777777877765544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=8.6e-09 Score=103.08 Aligned_cols=252 Identities=12% Similarity=0.020 Sum_probs=173.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhcccchHHHHHHHHHHHHhCC--C---CchhHHHHHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDP------VTFSRLLSLSASQACLVRGRSLHAYSIKTGY--A---ADVIVGNALITMYA 510 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~li~~~~ 510 (754)
.|++++|++++++..+. .|+. ..+..+...+...|++++|...+..+.+..- . .....+..+...|.
T Consensus 25 ~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (366)
T d1hz4a_ 25 DGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 102 (366)
T ss_dssp TTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 66677777777666553 2221 2444555666677777777777776654211 1 11234455666777
Q ss_pred hcCCHHHHHHHHhccCC-------CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHH
Q 004425 511 KCGSIDGAFQIFKGISD-------RD----IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP----DDISILGVLQAC 575 (754)
Q Consensus 511 ~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~ 575 (754)
..|++..|...+..... +. ...+..+...+...|+++.+...+++........ ...++......+
T Consensus 103 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (366)
T d1hz4a_ 103 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 182 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 88888888877765421 11 1245566778888999999999998887643222 223556666677
Q ss_pred HhcCCHHHHHHHHHHHHHHhCCCCC-----ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHH
Q 004425 576 IYSGLSEGGICLFNEIEQIYGLRPI-----LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-----SPLLWRTLVSVSK 644 (754)
Q Consensus 576 ~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~ 644 (754)
...+...++...+........-... ...+..+...+...|++++|...+++. ...| ....+..+..++.
T Consensus 183 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 262 (366)
T d1hz4a_ 183 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 262 (366)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 8889999999888877663332222 124556777888999999999999865 1111 3556677888999
Q ss_pred hcCChHHHHHHHHHhhc------cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 645 LMANSKFSILASKRLLD------LEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
..|+.++|...+++++. ..|....++..++.+|...|++++|.+.+++..+
T Consensus 263 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 263 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999874 3455667899999999999999999999987644
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=6.5e-10 Score=108.81 Aligned_cols=224 Identities=9% Similarity=0.048 Sum_probs=150.7
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhccCC---CChhHHHHHHHHH
Q 004425 465 VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCG-SIDGAFQIFKGISD---RDIVSWNAMLSAY 540 (754)
Q Consensus 465 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~ 540 (754)
..++.+...+.+.+..++|.+.++++++.+ +-+...|+....++...| ++++|...++...+ .+..+|+.+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 345555566677778888888888888865 445666777777777766 47888888877642 4566788888888
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHhhcCC--
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLGRAGR-- 616 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-- 616 (754)
...|++++|+..++++++ +.|+ ...|..+...+.+.|++++|++.++.+.+ +.| +...|+.+..++.+.|.
T Consensus 123 ~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccc
Confidence 888888888888888887 5554 45777788888888888888888888866 233 34566666666655554
Q ss_pred ----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc--hHHHHHHHHHhc--CCchHH
Q 004425 617 ----LSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG--SFILVSNMYAGQ--GMLDEA 686 (754)
Q Consensus 617 ----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~a 686 (754)
+++|++.+.+. ...| +...|..+...+.. ...+++...++++++++|+... .+..++.+|... +..+.+
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 46677666543 3334 57777777665443 3456777777777777776433 345566666443 556666
Q ss_pred HHHHHHHhh
Q 004425 687 AKVRTTMND 695 (754)
Q Consensus 687 ~~~~~~m~~ 695 (754)
...+++..+
T Consensus 277 ~~~~~ka~~ 285 (315)
T d2h6fa1 277 EDILNKALE 285 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=4.3e-10 Score=111.76 Aligned_cols=228 Identities=9% Similarity=-0.010 Sum_probs=170.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccc--chHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDP-VTFSRLLSLSASQA--CLVRGRSLHAYSIKTGYAADVIVG-NALITMYAKCGSIDG 517 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~ 517 (754)
.|..++|+..++...+. .|+. ..|..+..++...+ +.+++...+..+.+... .+...+ ......+...|.+++
T Consensus 86 ~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 86 AALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHH
Confidence 56677888888888765 4433 45555555555544 47888888888887653 334443 345567788899999
Q ss_pred HHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004425 518 AFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQI 594 (754)
Q Consensus 518 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 594 (754)
|...++.+.+ .+..+|+.+...+...|++++|...+++..+ +.|+.. .....+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~- 236 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLL- 236 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHH-
Confidence 9999998875 3567899999999999999888776665554 233322 233445666778888888888766
Q ss_pred hCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 595 YGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 595 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
.-++....+..++..+...|+.++|.+.+.+. ...| +..+|..++.++...|+.++|...++++++++|.+...|..
T Consensus 237 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 237 -GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp -SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred -hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 34455566677788888899999999988765 4455 57788889999999999999999999999999999999998
Q ss_pred HHHHHHh
Q 004425 673 VSNMYAG 679 (754)
Q Consensus 673 l~~~~~~ 679 (754)
|+..+.-
T Consensus 316 L~~~~~~ 322 (334)
T d1dcea1 316 LRSKFLL 322 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 9887764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=3.9e-09 Score=103.16 Aligned_cols=157 Identities=8% Similarity=-0.029 Sum_probs=80.0
Q ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004425 430 FNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPV-TFSRLLSLSASQA-CLVRGRSLHAYSIKTGYAADVIVGNALIT 507 (754)
Q Consensus 430 ~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 507 (754)
++.+...+.+ .+.+++|++++++.++. .|+.. .|+....++...| ++++|...++.+.+.. +-+..+|..+..
T Consensus 46 ~~~~~~~~~~--~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 46 YDYFRAVLQR--DERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHH--TCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHh--CCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 3444444444 55556666666665554 34432 3344444444443 3555555555555543 334555555555
Q ss_pred HHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC---
Q 004425 508 MYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGL--- 580 (754)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--- 580 (754)
.+.+.|++++|+..|+.+.+ .+..+|+.+...+...|++++|++.++++++ +.|+ ...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccch
Confidence 55556666666666555532 3445555555555556666666666666555 3343 2344444444443333
Q ss_pred ---HHHHHHHHHHHHH
Q 004425 581 ---SEGGICLFNEIEQ 593 (754)
Q Consensus 581 ---~~~a~~~~~~~~~ 593 (754)
+++|+..+..+.+
T Consensus 199 ~~~~~~ai~~~~~al~ 214 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIK 214 (315)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHH
Confidence 3455555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=2e-08 Score=97.97 Aligned_cols=187 Identities=10% Similarity=0.055 Sum_probs=138.8
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-C-hhHHHHHHHHHHHcCChHHHHHHH
Q 004425 478 ACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--R-D-IVSWNAMLSAYALHGLGKGALLLF 553 (754)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~ 553 (754)
+..+.+..++++.++...+.+...+...+..+.+.|+++.|..+|+.+.+ | + ...|...+..+.+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888888765556677788888888899999999999987743 2 3 346888888888889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC----C
Q 004425 554 EEMKREGFAPDDISILGVLQ-ACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS----P 628 (754)
Q Consensus 554 ~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 628 (754)
+++++.+.. +...|..... -+...|+.+.|..+|+.+... .+.+...+..+++.+.+.|++++|+.+|++. +
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 988874422 2233333322 234467888899999988773 3444667888888888888888888888764 3
Q ss_pred CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 629 FSE--SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 629 ~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
..| ....|..++..-..+|+.+.+..+.+++.++.|++.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 333 256888888888888888888888888888887753
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=3.7e-08 Score=98.26 Aligned_cols=57 Identities=9% Similarity=-0.091 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC---------CcchHHHHHHHHHhcCCchHHHHH
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLDLEPK---------DAGSFILVSNMYAGQGMLDEAAKV 689 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~ 689 (754)
...|..+..++...|+.++|...+++++++.+. ....+..+...+...++.+++.+-
T Consensus 291 ~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 291 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 344555666666666666666666666665432 112334445556677777777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=1.4e-09 Score=103.58 Aligned_cols=116 Identities=15% Similarity=-0.001 Sum_probs=59.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDP---VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGA 518 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 518 (754)
..+.+.++.-+.+........+. .+|..+...+.+.|++++|...++++++.. +-++.+++.+..+|.+.|++++|
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHh
Confidence 34455566666665543211111 234444455555566666666665555543 23445555555555555555555
Q ss_pred HHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004425 519 FQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKR 558 (754)
Q Consensus 519 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 558 (754)
...|+++.+ .+..+|..+..+|...|++++|+..|++.++
T Consensus 91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 555555432 2234455555555555555555555555555
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.92 E-value=6.7e-08 Score=94.11 Aligned_cols=182 Identities=9% Similarity=0.025 Sum_probs=143.7
Q ss_pred CCHHHHHHHHhccCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004425 513 GSIDGAFQIFKGISD----RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLF 588 (754)
Q Consensus 513 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 588 (754)
+..++|..+|++..+ .+...|...+..+...|+.++|..+|+++++.........|...+..+.+.|.++.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 456788888887542 3556788889999999999999999999998432222347889999999999999999999
Q ss_pred HHHHHHhCCCCCccHHHHHHHHH-hhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 589 NEIEQIYGLRPILEHFACMVDLL-GRAGRLSEAMNLINSS--PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 589 ~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
+++.+ ..+.+...|...+... ...|+.+.|..+++.+ ..+.++..|..++..+...|+.+.|..+|++++...|.
T Consensus 158 ~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 99865 2333445555555543 3468999999999876 22346899999999999999999999999999998876
Q ss_pred Ccc----hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 666 DAG----SFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 666 ~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
++. .|......-...|+.+.+.++.+++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 543 5777777777889999999999988663
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=4.1e-08 Score=93.03 Aligned_cols=213 Identities=11% Similarity=-0.089 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHHhCC-CC--chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 004425 480 LVRGRSLHAYSIKTGY-AA--DVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLF 553 (754)
Q Consensus 480 ~~~a~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 553 (754)
.+.+...++++....- .+ ...++..+...|.+.|++++|...|++..+ .++.+|+.+..+|.+.|++++|+..|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 3444444455544321 11 234566667788888888888888887643 45677888888888888888888888
Q ss_pred HHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 004425 554 EEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE 631 (754)
Q Consensus 554 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 631 (754)
++.++ +.|+. .++..+..++...|++++|...|+...+. .+.+......+...+.+.+..+.+..+.... ...+
T Consensus 95 ~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 95 DSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hHHHH--HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 88887 45654 46777778888888888888888887662 1223333334444445555544444433322 1111
Q ss_pred CHHHHHHHHHHHH----hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 632 SPLLWRTLVSVSK----LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 632 ~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
+...+.. +..+. ..+..+.+...+.......|....+|..+|.+|...|++++|.+.+++.....
T Consensus 171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 171 EQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 1111211 11111 11223344444444445556666778888888888888888888888765543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.83 E-value=7.8e-10 Score=109.87 Aligned_cols=243 Identities=12% Similarity=-0.056 Sum_probs=177.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH-HHH---HHHH-------HhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVT-FSR---LLSL-------SASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYA 510 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~-~~~---ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 510 (754)
.+..++|++++++..+. .|+..+ |+. ++.. +...|.++++..+++.+.+.. +-+...+..+..++.
T Consensus 42 ~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (334)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHH
Confidence 34457888888888865 577643 222 2222 233456788899999988865 446667777777776
Q ss_pred hcC--CHHHHHHHHhccCC---CChhHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004425 511 KCG--SIDGAFQIFKGISD---RDIVSWNA-MLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEG 583 (754)
Q Consensus 511 ~~g--~~~~A~~~~~~~~~---~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 583 (754)
..+ ++++|...++.+.+ ++...|.. ....+...|.+++|+..++++++ ..|+ ...|..+..++...|++++
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~p~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCHHH
Confidence 665 48999999988743 45666654 44677778999999999999988 5564 4688888889999999888
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 584 GICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 584 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
|...++..... .|. ...+...+...+..+++...+.+. ..+++...+..+...+...|+.++|...+.++++
T Consensus 197 A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 197 SGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp SSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 87666554431 111 122334455667777777766543 2223455566677778888999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 662 LEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 662 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.+|++..++..++.+|...|++++|.+.+++..+
T Consensus 271 ~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998766
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=8e-08 Score=77.73 Aligned_cols=88 Identities=9% Similarity=0.077 Sum_probs=65.2
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchH
Q 004425 608 VDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDE 685 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 685 (754)
+..+.+.|++++|+..|++. ...| ++..|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 45556666777777666654 2233 677788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhh
Q 004425 686 AAKVRTTMND 695 (754)
Q Consensus 686 a~~~~~~m~~ 695 (754)
|...+++..+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8888877654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=4.3e-07 Score=80.76 Aligned_cols=139 Identities=11% Similarity=-0.049 Sum_probs=107.1
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 004425 506 ITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGG 584 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 584 (754)
...+...|+++.|.+.|+++..++...|..+..+|...|++++|++.|++.++ +.|+. ..|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 45578889999999999999889999999999999999999999999999998 56755 5888899999999999999
Q ss_pred HHHHHHHHHHhCCCCCcc-HHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Q 004425 585 ICLFNEIEQIYGLRPILE-HFACMVDLLGRAGRLSEAMNLINSSPFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDL 662 (754)
Q Consensus 585 ~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 662 (754)
...|++.... .+.+.. .|. ..| ...+. ...++..+..++...|++++|...+++++++
T Consensus 90 ~~~~~kAl~~--~~~n~~~~~~-------~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLIDYK-------ILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHT--TTTCSEEECG-------GGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--CccCchHHHH-------Hhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999988762 222211 000 000 00111 1345667777888889999999999999998
Q ss_pred CCCC
Q 004425 663 EPKD 666 (754)
Q Consensus 663 ~p~~ 666 (754)
.|+.
T Consensus 150 ~~~~ 153 (192)
T d1hh8a_ 150 KSEP 153 (192)
T ss_dssp CCSG
T ss_pred CCCc
Confidence 8874
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=1.7e-07 Score=75.72 Aligned_cols=105 Identities=9% Similarity=-0.016 Sum_probs=78.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCh
Q 004425 572 LQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFS-ESPLLWRTLVSVSKLMANS 649 (754)
Q Consensus 572 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~ 649 (754)
...+...|++++|+.+|++..+. -+-+...|..++.+|...|++++|++.+++. ... .++..|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 44566666777777777766552 2333456666777777777777777776654 223 3788999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 650 KFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 650 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
++|+..++++++++|+++..+..+.++.+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999999999999999988887754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.65 E-value=6.5e-08 Score=87.51 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=41.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCc
Q 004425 606 CMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGML 683 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 683 (754)
..+..|.+.|++++|++.|++. ...| ++..|..++.++...|++++|+..++++++++|+++.+|..+|.+|...|++
T Consensus 9 ~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~ 88 (201)
T d2c2la1 9 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY 88 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence 3334444444444444444322 1122 3444555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHH
Q 004425 684 DEAAKVRTTM 693 (754)
Q Consensus 684 ~~a~~~~~~m 693 (754)
++|...+++.
T Consensus 89 ~~A~~~~~~a 98 (201)
T d2c2la1 89 DEAIANLQRA 98 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.58 E-value=7.4e-08 Score=77.17 Aligned_cols=89 Identities=15% Similarity=0.068 Sum_probs=79.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCC
Q 004425 605 ACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 605 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
..++..+.+.|++++|+..+++. ...| ++..|..++.++...|++++|+..++++++++|+++.++..|+.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34677788889999998888865 3345 699999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHH
Q 004425 683 LDEAAKVRTTM 693 (754)
Q Consensus 683 ~~~a~~~~~~m 693 (754)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=4e-07 Score=78.38 Aligned_cols=85 Identities=9% Similarity=0.086 Sum_probs=43.9
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHH
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
.|.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++++|++..+|..+|.+|...|++++|.
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~ 98 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 98 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHH
Confidence 344445555555444433 1122 45555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh
Q 004425 688 KVRTTMN 694 (754)
Q Consensus 688 ~~~~~m~ 694 (754)
..+++..
T Consensus 99 ~~~~~a~ 105 (159)
T d1a17a_ 99 RDYETVV 105 (159)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=1.1e-06 Score=84.24 Aligned_cols=188 Identities=12% Similarity=-0.023 Sum_probs=127.4
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHHHHH
Q 004425 505 LITMYAKCGSIDGAFQIFKGISD-----RD----IVSWNAMLSAYALHGLGKGALLLFEEMKREGF---APD--DISILG 570 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ 570 (754)
..+.|..+|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+.-. .+. ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 35678888888888888876642 22 24788889999999999999999998765211 111 235666
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC----C-HHHH
Q 004425 571 VLQACIY-SGLSEGGICLFNEIEQIYGLRPI----LEHFACMVDLLGRAGRLSEAMNLINSS----PFSE----S-PLLW 636 (754)
Q Consensus 571 ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p----~-~~~~ 636 (754)
+...|.. .|++++|+++|++..+-.....+ ..++..++.+|...|++++|.+.++++ +..+ . ...+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 6666754 69999999999987652211111 345778999999999999999999865 1111 1 1234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhccCCCCcch-----HHHHHHHHHh--cCCchHHHHHHHH
Q 004425 637 RTLVSVSKLMANSKFSILASKRLLDLEPKDAGS-----FILVSNMYAG--QGMLDEAAKVRTT 692 (754)
Q Consensus 637 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~a~~~~~~ 692 (754)
...+..+...|+.+.|...++++.+++|..+.+ ...++.+|.. .+++++|+..|++
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455556678899999999999999999874432 3445555554 3568888888853
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=7.3e-07 Score=76.67 Aligned_cols=117 Identities=7% Similarity=0.004 Sum_probs=83.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 004425 572 LQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANS 649 (754)
Q Consensus 572 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 649 (754)
...|.+.|++++|+..|+++.+. -+-+...|..++.+|...|++++|++.|+++ ...| +..+|..++.++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 34555666666666666666552 1223455666666666667777776666644 2334 678999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHHHH--HhcCCchHHHHHH
Q 004425 650 KFSILASKRLLDLEPKDAGSFILVSNMY--AGQGMLDEAAKVR 690 (754)
Q Consensus 650 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~ 690 (754)
++|...++++++++|+++..+..+..+. ...+.+++|....
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 137 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 137 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999888887664 4445677776553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.46 E-value=2.5e-07 Score=83.48 Aligned_cols=100 Identities=7% Similarity=-0.103 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSK 644 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 644 (754)
.+......+...|++++|+..|+++.+. .+.+...|..++.+|.+.|++++|++.+++. ...| ++.+|..++.++.
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3333444444444444444444444331 1122333444444444444444444444432 2333 3445555555555
Q ss_pred hcCChHHHHHHHHHhhccCCCCcc
Q 004425 645 LMANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
..|++++|...++++++++|++..
T Consensus 84 ~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 84 EMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHhCcccHH
Confidence 555555555555555555554333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=4.7e-07 Score=80.54 Aligned_cols=87 Identities=11% Similarity=0.002 Sum_probs=80.4
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHH
Q 004425 608 VDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
+..+...|++++|++.|+++ .+|++.+|..++.++...|++++|+..|+++++++|+++.+|..+|.+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i-~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV-QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS-SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 45567899999999999987 35789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 004425 688 KVRTTMND 695 (754)
Q Consensus 688 ~~~~~m~~ 695 (754)
+.+++...
T Consensus 91 ~~~~kAl~ 98 (192)
T d1hh8a_ 91 KDLKEALI 98 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=4.1e-07 Score=73.56 Aligned_cols=109 Identities=12% Similarity=-0.063 Sum_probs=82.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCCH---HHHHHHHH
Q 004425 569 LGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGR---LSEAMNLINSS-PFSESP---LLWRTLVS 641 (754)
Q Consensus 569 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~ 641 (754)
..+++.+...+++++|.+.|++.... -+.+..++..++.+|.+.++ +++|+++++++ ...|++ .+|..|+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35667777788888888888888662 23355777788888876554 45688888865 334433 47888999
Q ss_pred HHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 642 VSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 642 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
+|...|++++|+..++++++++|++..+...+..+..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998888777665543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=2.3e-06 Score=74.21 Aligned_cols=134 Identities=11% Similarity=0.010 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLL 611 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 611 (754)
.+......+.+.|++++|+..|++.++. .|.... ..+.-......+. ...|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~------------~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESS------------FSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCC------------CCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhccc------------cchHHHhhhchhH--------HHHHHHHHHHH
Confidence 3445556677777777777777777652 111100 0000001111111 12466788899
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHH
Q 004425 612 GRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 612 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
.+.|++++|+..+++. ...| ++.+|..++.++...|++++|...++++++++|+|+.+...++.++...++..+..
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998765 3345 78999999999999999999999999999999999999999999988777666554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=2.7e-06 Score=73.72 Aligned_cols=110 Identities=6% Similarity=-0.010 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLM 646 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 646 (754)
.+......+.+.|++++|+..|.+........+..... .......+ -..+|..+..+|...
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~------------~~~~~~~~-------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE------------EAQKAQAL-------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH------------HHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH------------HHhhhchh-------HHHHHHHHHHHHHhh
Confidence 45555667888888888888888887632222221110 00000000 123567788889999
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 647 ANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 647 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
|++++|+..++++++++|+++.+|..+|.+|...|++++|...+++..+
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998766
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.34 E-value=4.4e-06 Score=79.92 Aligned_cols=172 Identities=11% Similarity=-0.021 Sum_probs=131.3
Q ss_pred CHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 004425 514 SIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKRE----GFAPDD-ISILGVLQACIYSGLSEGGICLF 588 (754)
Q Consensus 514 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 588 (754)
++++|.++|.+ ....|...|++++|++.|++..+. +-.++. .+|..+..+|.+.|++++|...+
T Consensus 32 ~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 46777776554 577899999999999999998762 222222 47889999999999999999999
Q ss_pred HHHHHHhCCCCC----ccHHHHHHHHHhh-cCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 004425 589 NEIEQIYGLRPI----LEHFACMVDLLGR-AGRLSEAMNLINSS-------PFSE-SPLLWRTLVSVSKLMANSKFSILA 655 (754)
Q Consensus 589 ~~~~~~~~~~p~----~~~~~~l~~~~~~-~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 655 (754)
++..+.+.-..+ ...+..+...|.. .|++++|++.+++. +..+ -..++..++..+...|++++|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 987663221222 3456677777754 69999999999765 1111 144577889999999999999999
Q ss_pred HHHhhccCCCCcc-------hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 656 SKRLLDLEPKDAG-------SFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 656 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
++++....|.+.. .+...+.++...|+++.|...+++..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999887653 3567777888999999999999987654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.2e-06 Score=70.61 Aligned_cols=92 Identities=11% Similarity=-0.023 Sum_probs=77.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHhhccCCCC--cchHHHHHHH
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLM---ANSKFSILASKRLLDLEPKD--AGSFILVSNM 676 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~ 676 (754)
...++..+...+++++|++.|++. ...| ++.++..+..++... ++.++|+.+++++++.+|.+ ..++..||.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456788888999999999999876 3334 788999999988764 45567999999999998874 3489999999
Q ss_pred HHhcCCchHHHHHHHHHhh
Q 004425 677 YAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 677 ~~~~g~~~~a~~~~~~m~~ 695 (754)
|.+.|++++|.+.++++.+
T Consensus 82 y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 9999999999999998866
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.30 E-value=4.5e-06 Score=70.79 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLM 646 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 646 (754)
.+..-...+.+.|++++|+..|+++..-....+... -......... ....++..+..++...
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~--------------~~~~~~~~~~----~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--------------DQILLDKKKN----IEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC--------------CHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh--------------hHHHHHhhhh----HHHHHHhhHHHHHHHh
Confidence 455566677788888888888887765211111100 0000000000 0124677788889999
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCCh
Q 004425 647 ANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPES 726 (754)
Q Consensus 647 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 726 (754)
|++++|+..++++++++|++..+|..+|.+|...|++++|...+++..+. .|..
T Consensus 81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------------------------~P~n 134 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------------------------NPNN 134 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------STTC
T ss_pred cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCC
Confidence 99999999999999999999999999999999999999999999986552 3555
Q ss_pred HHHHHHHHHHHHHHHH
Q 004425 727 EEIYSKLDLLNDEMKL 742 (754)
Q Consensus 727 ~~~~~~l~~l~~~~~~ 742 (754)
.++...+..+..++++
T Consensus 135 ~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 135 LDIRNSYELCVNKLKE 150 (153)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777777777765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.25 E-value=9.7e-06 Score=70.00 Aligned_cols=91 Identities=9% Similarity=0.051 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
.|..+..+|.+.|++++|+..+++. ...| +..+|..+..++...|++++|+..++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4667888899999999999999865 3334 7889999999999999999999999999999999999999999998777
Q ss_pred CCchH-HHHHHHHH
Q 004425 681 GMLDE-AAKVRTTM 693 (754)
Q Consensus 681 g~~~~-a~~~~~~m 693 (754)
+...+ ..+++..|
T Consensus 146 ~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 146 KEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 75543 44555555
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.23 E-value=4e-06 Score=72.66 Aligned_cols=110 Identities=10% Similarity=0.067 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSE-SPLLWRTLVSVSKL 645 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~ 645 (754)
.+......+...|++++|+..|+++.+. ...........+. ....| +...|..+..++..
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~-------------~~~~~~~~~~~~~------~~~~~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY-------------VEGSRAAAEDADG------AKLQPVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------HHHHHHHSCHHHH------GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------hhhhhhhhhhHHH------HHhChhhHHHHHHHHHHHHh
Confidence 3445556677788888888888776541 0000011111111 11123 46677888888999
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 646 MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.|++++|+..++++++++|+++.+|..+|.+|...|++++|...+++..+
T Consensus 90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998766
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=2.5e-05 Score=67.47 Aligned_cols=131 Identities=8% Similarity=-0.002 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHh
Q 004425 534 NAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLG 612 (754)
Q Consensus 534 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 612 (754)
......+...|++++|+..|++.++. .+ .........+.. .+.| ....|..+..+|.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~--~~----------~~~~~~~~~~~~----------~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY--VE----------GSRAAAEDADGA----------KLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--HH----------HHHHHSCHHHHG----------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--hh----------hhhhhhhhHHHH----------HhChhhHHHHHHHHHHHH
Confidence 34556677788888888888877641 11 000111111110 1111 2345677888899
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHH
Q 004425 613 RAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEA 686 (754)
Q Consensus 613 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 686 (754)
+.|++++|+..++++ ...| ++..|..++.++...|++++|+..++++++++|++..++..+..++.......++
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998865 4555 6889999999999999999999999999999999999999998887665554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.16 E-value=0.00047 Score=64.25 Aligned_cols=176 Identities=10% Similarity=-0.019 Sum_probs=105.9
Q ss_pred CHHHHHHHHhccCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHH
Q 004425 514 SIDGAFQIFKGISD-RDIVSWNAMLSAYAL----HGLGKGALLLFEEMKREGFAPDDISILGVLQACI----YSGLSEGG 584 (754)
Q Consensus 514 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~~a 584 (754)
+...|...++...+ .+...+..+...+.. .++.+.|...+++..+.|.. .....+...+. .......+
T Consensus 53 d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a 129 (265)
T d1ouva_ 53 NLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKA 129 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHH
T ss_pred hHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHH
Confidence 44445444444432 223333333333332 34566677777776665422 11222222222 23345556
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHH
Q 004425 585 ICLFNEIEQIYGLRPILEHFACMVDLLGR----AGRLSEAMNLINSSPFSESPLLWRTLVSVSKL----MANSKFSILAS 656 (754)
Q Consensus 585 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~ 656 (754)
...+..... ..+...+..|...|.. ..+...+..+++......++.....|...+.. ..+.+.|+..+
T Consensus 130 ~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~ 205 (265)
T d1ouva_ 130 VEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARY 205 (265)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhH
Confidence 666655544 2334455666666654 45666777777665444567777777766655 56899999999
Q ss_pred HHhhccCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 004425 657 KRLLDLEPKDAGSFILVSNMYAG----QGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 657 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 698 (754)
+++.+.+ ++.++..|+.+|.. ..+.++|.+.+++..+.|.
T Consensus 206 ~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 206 SKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 9998874 57788999999986 4489999999998877664
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=3.5e-06 Score=69.00 Aligned_cols=90 Identities=6% Similarity=0.022 Sum_probs=73.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc-------hHHHHHHH
Q 004425 606 CMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG-------SFILVSNM 676 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~ 676 (754)
.++..+.+.|++++|++.|++. ...| ++.+|..+..++...|++++|+..++++++++|+++. +|..++.+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 4566777778888888777654 2334 6889999999999999999999999999999998765 45567777
Q ss_pred HHhcCCchHHHHHHHHHhh
Q 004425 677 YAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 677 ~~~~g~~~~a~~~~~~m~~ 695 (754)
+...+++++|.+.+++...
T Consensus 89 ~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 8888999999999987543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.13 E-value=1.9e-05 Score=68.12 Aligned_cols=111 Identities=8% Similarity=-0.012 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004425 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKL 645 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 645 (754)
..+......+.+.|++++|...|++........+.... +.. ...+.+ ...++..+..++..
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~--------------~~~-~~~~~~----~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE--------------KES-KASESF----LLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH--------------HHH-HHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch--------------hhh-hhcchh----HHHHHHhHHHHHHH
Confidence 35566677778888888888888776653222221100 000 000000 13356677888899
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 646 MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.|++++|+..++++++++|++..+|..++.+|...|++++|...+++..+
T Consensus 77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.06 E-value=3.1e-05 Score=65.38 Aligned_cols=128 Identities=5% Similarity=-0.115 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDL 610 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 610 (754)
..+......+.+.|++.+|+..|++.+.. -|.... ..-.........+ ...+|..++.+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~-----------~~~~~~~~~~~~~--------~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEE-----------WDDQILLDKKKNI--------EISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTT-----------CCCHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhh-----------hhhHHHHHhhhhH--------HHHHHhhHHHH
Confidence 45677788899999999999999999873 221110 0000000000111 12357778889
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 611 LGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
|.+.|++++|++.+++. ...| +..+|..++.++...|++++|...++++++++|+|+.+...+..+..+
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999865 3445 789999999999999999999999999999999999988887766543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=6.9e-07 Score=92.89 Aligned_cols=108 Identities=6% Similarity=-0.086 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSK 644 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 644 (754)
.+..+...+.+.|+.++|...+...... .| ...+..+++++...|++++|+..+++. ...| +...|+.|+..+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4444444555555555555554443321 01 123445555555555555555555443 2223 3445555555555
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
..|+..+|+..|.+++..+|..+.++..|+.+|.
T Consensus 198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 5555555555555555555555555555555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.89 E-value=3.2e-05 Score=61.23 Aligned_cols=87 Identities=10% Similarity=-0.046 Sum_probs=51.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc
Q 004425 536 MLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA 614 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 614 (754)
+...+.+.|++++|+..|++.++ ..|+ ...|..+..++.+.|++++|+..|++..+. .+.+...+..++.+|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHC
Confidence 44556666777777777777666 3454 346666666666667777777666666551 122244555555555555
Q ss_pred CCHHHHHHHHHh
Q 004425 615 GRLSEAMNLINS 626 (754)
Q Consensus 615 g~~~~A~~~~~~ 626 (754)
|++++|++.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 555555555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.84 E-value=4.5e-05 Score=66.03 Aligned_cols=116 Identities=8% Similarity=-0.123 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004425 568 ILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMA 647 (754)
Q Consensus 568 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 647 (754)
...........|++++|.+.|.....- -+.... . -+...........-++.. ....|..+..++...|
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l-~----~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALRE---WRGPVL-D----DLRDFQFVEPFATALVED----KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT---CCSSTT-G----GGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---Cccccc-c----cCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence 334455778889999999999998662 221100 0 000000111111111111 2456788999999999
Q ss_pred ChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 648 NSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 648 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++++|+..++++++++|.+...|..++.+|...|++++|.+.|++++.
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999843
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.0022 Score=60.82 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=56.3
Q ss_pred HHHHHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHH
Q 004425 99 LINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFG 178 (754)
Q Consensus 99 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 178 (754)
+.+.|-+.|.++.|..+|..+. -|..++..+.+.+++..|++++.+.. +..+|..+...|........+
T Consensus 20 i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la 88 (336)
T d1b89a_ 20 VGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA 88 (336)
T ss_dssp ---------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHHH
Confidence 3334444555555555554332 24445555555555555555544331 334454455544444333221
Q ss_pred HHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCC---CCCcchHHHHHHHHHHc
Q 004425 179 EQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLA---YKDVRCVNFMILEYNKA 238 (754)
Q Consensus 179 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 238 (754)
.+...+...++.....++..|-..|.+++...+++... ..+...++.++..|++.
T Consensus 89 -----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 89 -----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 146 (336)
T ss_dssp -----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred -----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 11112223344444556666666666666666666432 23444566666666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.79 E-value=0.0091 Score=56.47 Aligned_cols=238 Identities=9% Similarity=-0.001 Sum_probs=145.7
Q ss_pred CCCCcHHHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHHHHh
Q 004425 56 LLFNDWPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYL 135 (754)
Q Consensus 56 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 135 (754)
|+......+...|-+.|.++.|..++..+. -|..++..|.+.++++.|.+++... .+..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 455556678888889999999999987543 4778889999999999998888754 36678888888888
Q ss_pred cCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHH
Q 004425 136 DDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAEN 215 (754)
Q Consensus 136 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (754)
+.....-+ .+.......+......++..+-..|..+....+++..... -..+...++.++..|++.+. ++-.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e 153 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMRE 153 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHH
Confidence 87766543 2333445556677778889998999999888888876532 25677788999999998754 33444
Q ss_pred HhccCCCC-----------CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHH
Q 004425 216 VFRGLAYK-----------DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHG 284 (754)
Q Consensus 216 ~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 284 (754)
.+...... ....|.-++--|.+.|.++.|+.+.-. -.++.......+..+.+..+.+...++..
T Consensus 154 ~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~ 228 (336)
T d1b89a_ 154 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELYYRAIQ 228 (336)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHHHH
T ss_pred HHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChHHHHHHHH
Confidence 44332211 122355556666666666666554322 13345555666677777777777777766
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHc
Q 004425 285 LAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDA 320 (754)
Q Consensus 285 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 320 (754)
..++. ++...+.|+......-+..+..+.+++
T Consensus 229 ~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~k 260 (336)
T d1b89a_ 229 FYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSK 260 (336)
T ss_dssp HHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHHc----CHHHHHHHHHHhccCCCHHHHHHHHHh
Confidence 66553 233345555555555566655555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=3.8e-05 Score=58.52 Aligned_cols=72 Identities=10% Similarity=0.016 Sum_probs=52.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHH
Q 004425 606 CMVDLLGRAGRLSEAMNLINSS--------PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNM 676 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 676 (754)
.++..+.+.|++++|++.+++. ...+ ...++..|..++.+.|++++|+..++++++++|+++.++..++.+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 3455555555555555555432 1112 266788999999999999999999999999999999998888654
Q ss_pred H
Q 004425 677 Y 677 (754)
Q Consensus 677 ~ 677 (754)
.
T Consensus 90 ~ 90 (95)
T d1tjca_ 90 E 90 (95)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.75 E-value=1.1e-05 Score=67.40 Aligned_cols=115 Identities=12% Similarity=-0.000 Sum_probs=66.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHhCCCCC-ccHHHHH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGL----------SEGGICLFNEIEQIYGLRPI-LEHFACM 607 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~l 607 (754)
|-+.+.+++|+..|+..++ +.|+. ..+..+..+|...++ +++|+..|+++.+ +.|+ ...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhH
Confidence 4456678888888888887 55655 466666666654333 3445555555443 2222 2344444
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 608 VDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
+.+|...|++. ++... ..+++++|...++++++++|++...+..|+...-..
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence 44443332210 11100 112468899999999999999988888887665433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.73 E-value=0.011 Score=54.38 Aligned_cols=221 Identities=12% Similarity=-0.048 Sum_probs=122.2
Q ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----ccchHHHHHHHHHHHHhCCCCchhHHHHH
Q 004425 430 FNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSAS----QACLVRGRSLHAYSIKTGYAADVIVGNAL 505 (754)
Q Consensus 430 ~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 505 (754)
+..+...+.. .+++++|++.|++..+.| +...+..|-..+.. ..+...+...+....+.+ +......+
T Consensus 5 ~~~lG~~~~~--~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l 76 (265)
T d1ouva_ 5 LVGLGAKSYK--EKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence 3334344444 566666666666665554 22333333333332 345666666666666554 22333333
Q ss_pred HHHHHh----cCCHHHHHHHHhccCCC-ChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004425 506 ITMYAK----CGSIDGAFQIFKGISDR-DIVSWNAMLSAYAL----HGLGKGALLLFEEMKREGFAPDDISILGVLQACI 576 (754)
Q Consensus 506 i~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 576 (754)
...+.. .++.+.|...++...+. .......+...+.. ......+...+...... .+...+..+...+.
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~ 153 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYD 153 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhc
Confidence 333332 34566666666655332 22233333333332 33456666666665542 24455555666555
Q ss_pred h----cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 004425 577 Y----SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR----AGRLSEAMNLINSSPFSESPLLWRTLVSVSKL--- 645 (754)
Q Consensus 577 ~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~--- 645 (754)
. ..+...+..+++...+ .| +......+...|.. ..+.++|+.+|++.....++..+..|...+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~~-~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g 229 (265)
T d1ouva_ 154 AGRGTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEG 229 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred cCCCcccccccchhhhhcccc-cc---ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCC
Confidence 4 3456667777766655 23 34455555555554 56788888888876444567777777776664
Q ss_pred -cCChHHHHHHHHHhhccCCC
Q 004425 646 -MANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 646 -~g~~~~a~~~~~~~~~~~p~ 665 (754)
..|.++|...++++.+..+.
T Consensus 230 ~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 230 VTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp SSCCSTTHHHHHHHHHHHTCH
T ss_pred CccCHHHHHHHHHHHHHCcCH
Confidence 34788899999888877654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.68 E-value=0.00011 Score=62.21 Aligned_cols=62 Identities=10% Similarity=-0.019 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCC-----------CcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDLEPK-----------DAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
..|+.+..++...|++++|...+++++++.|. ...+|..++.+|...|++++|...|++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777877777777777765432 122578889999999999999999998765
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.0002 Score=58.07 Aligned_cols=91 Identities=11% Similarity=0.005 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-----ccHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-----LEHFAC 606 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~ 606 (754)
+..+...|...|++++|+..|++.++ +.|+ ...+..+..+|.+.|++++|+..++++.+...-.+. ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44567778888888888888888887 4454 457777888888888888888888887652111111 123444
Q ss_pred HHHHHhhcCCHHHHHHHHH
Q 004425 607 MVDLLGRAGRLSEAMNLIN 625 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~ 625 (754)
+...+...+++++|++.++
T Consensus 85 lg~~~~~~~~~~~A~~~~~ 103 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYN 103 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 4455555555555555554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.63 E-value=1.8e-05 Score=66.10 Aligned_cols=83 Identities=13% Similarity=0.039 Sum_probs=58.9
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 613 RAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKL----------MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 613 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
+.+.+++|++.+++. ...| ++.+|..+..++.. .+.+++|+..++++++++|+++.+|..+|.+|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 444455555555543 2223 45555555555542 24567899999999999999999999999999887
Q ss_pred CC-----------chHHHHHHHHHhh
Q 004425 681 GM-----------LDEAAKVRTTMND 695 (754)
Q Consensus 681 g~-----------~~~a~~~~~~m~~ 695 (754)
|+ +++|.+.|++..+
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccc
Confidence 64 6888888887655
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=1.8e-05 Score=81.95 Aligned_cols=259 Identities=9% Similarity=-0.033 Sum_probs=130.9
Q ss_pred HHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHH
Q 004425 414 SARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYS 490 (754)
Q Consensus 414 ~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 490 (754)
+|.+.|++.. ......|..+...+.. .+++++| |++++.. .|+...-... ....-...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~--~~~l~ea---ye~~i~~--dp~~a~~~~~-e~~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTS--RQALQDL---YQKMLVT--DLEYALDKKV-EQDLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHH--HHHHHHH---HHHHHHH--CHHHHHHHTH-HHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHH--HchHHHH---HHHHHHc--ChhhHHHHhH-HHHHHHHHHHHHHHHHHHh
Confidence 4455555443 2233345555556666 6666665 5555543 3322110000 0000011233445555555
Q ss_pred HHhCCCCchhHHHH--HHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 004425 491 IKTGYAADVIVGNA--LITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD 565 (754)
Q Consensus 491 ~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 565 (754)
.+..-.++..-... +...+...+.++.|...+....+ ++...|..+...+.+.|+.++|...+++.... .| .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~ 152 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-Q 152 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-H
Confidence 54433333322221 22233445667777777776543 34557778888888899999999888777652 22 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 004425 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVSV 642 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 642 (754)
.++..+...+...|++++|..+|++..+ +.|+ ...|+.++.++...|+..+|...|.+. ..+|-+.++.+|...
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4677888889999999999999999876 3455 568999999999999999999988754 234578888888877
Q ss_pred HHhcCChHHHHHHHHHhhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 643 SKLMANSKFSILASKRLLDLEPK---DAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 643 ~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
+....+...+ ....+. ....+..+..++...+.+++..++.+++
T Consensus 230 ~~~~~~~~~~-------~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 230 LSKALESRDE-------VKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHHHTTSCCC-------CCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred HHHhhhhhhh-------hccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 6554322111 011111 1224455555666677776666655444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.00043 Score=52.36 Aligned_cols=63 Identities=17% Similarity=0.010 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC-------cchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD-------AGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+..+..++..+...|+++.|+..+++++++.|.+ +.++..|+.+|.+.|++++|...++++.+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 3345578889999999999999999999886654 34789999999999999999999998866
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.35 E-value=0.0002 Score=66.16 Aligned_cols=125 Identities=13% Similarity=-0.030 Sum_probs=83.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHH
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 618 (754)
.+.|++++|+..+++.++ ..|+. ..+..+...++..|++++|.+.++...+ +.|+ ...+..+..++...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence 356888888888888888 55654 5788888888888888888888888866 3454 334445555555555555
Q ss_pred HHHHHHHhC--CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchH
Q 004425 619 EAMNLINSS--PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSF 670 (754)
Q Consensus 619 ~A~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 670 (754)
++..-.... ...| +...+......+...|+.++|...++++.++.|..+..+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 443332221 1223 233334445566777899999999999999888876553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.33 E-value=0.0012 Score=56.67 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HhCCCCCccHH
Q 004425 530 IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQ----IYGLRPILEHF 604 (754)
Q Consensus 530 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 604 (754)
...+..+..++...|++++|+..++++++ +.|. ...|..++.++...|+..+|++.|+++.. +.|+.|...+-
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 35678889999999999999999999998 5674 56899999999999999999999998744 36888887653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.23 E-value=0.0011 Score=55.57 Aligned_cols=33 Identities=3% Similarity=-0.035 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 635 LWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 635 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
++..+..++...|++++|...+++++++.|+..
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 567788889999999999999999999877643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.22 E-value=0.0001 Score=68.23 Aligned_cols=121 Identities=12% Similarity=0.033 Sum_probs=90.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFS 652 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 652 (754)
..+.|++++|+..+++.++ .-+.+...+..++.+|+..|++++|.+.++.. ...| +...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 3467999999999999987 44556789999999999999999999999876 4456 466676676666655554444
Q ss_pred HHHHHHhhc-cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 653 ILASKRLLD-LEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 653 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
.....+... .+|++...+...+.++...|++++|...++++.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 333222222 345555667778889999999999999999886643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.63 E-value=0.053 Score=43.30 Aligned_cols=84 Identities=10% Similarity=-0.063 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh----cCCchH
Q 004425 614 AGRLSEAMNLINSSPFSESPLLWRTLVSVSKL----MANSKFSILASKRLLDLEPKDAGSFILVSNMYAG----QGMLDE 685 (754)
Q Consensus 614 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~ 685 (754)
..+.++|++++++.....++.....|...+.. ..|.++|...++++.+. .++.+...|+.+|.. ..+.++
T Consensus 36 ~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~ 113 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ 113 (133)
T ss_dssp TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred ccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHH
Confidence 34566666666655333455555555555543 35778888888888775 356678888888887 467889
Q ss_pred HHHHHHHHhhCCCc
Q 004425 686 AAKVRTTMNDLRLS 699 (754)
Q Consensus 686 a~~~~~~m~~~~~~ 699 (754)
|.+++++..+.|..
T Consensus 114 A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 114 AVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCH
Confidence 99999988776653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.25 E-value=0.062 Score=41.38 Aligned_cols=65 Identities=5% Similarity=-0.085 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHhc---CChHHHHHHHHHhhccCCCCc-chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 631 ESPLLWRTLVSVSKLM---ANSKFSILASKRLLDLEPKDA-GSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+...+...+..++.+. .+.++|+.++++++..+|.+. ..++.|+-+|.+.|++++|.+.++++.+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3445555555555544 345567777777777666543 4666777777777777777777776644
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.82 E-value=2 Score=41.95 Aligned_cols=264 Identities=13% Similarity=-0.005 Sum_probs=118.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccc
Q 004425 400 TALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAG-MEPDPVTFSRLLSLSASQA 478 (754)
Q Consensus 400 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~ 478 (754)
...+..+.+.++++.....+..-+ .+...-.....+... .|+.++|...+..+-..| ..|+.
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~--~g~~~~a~~~~~~lW~~~~~~p~~-------------- 138 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWN--TGQSEEAWQGAKELWLTGKSQPNA-------------- 138 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHH--TTCHHHHHHHHHHHHSCSSCCCTH--------------
T ss_pred HHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCCchH--------------
Confidence 334555666777776665554322 233333445556666 788888877777665554 23332
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004425 479 CLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKR 558 (754)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 558 (754)
+..++....+.| ..+...+-.-+......|+...|..+...+...........+........ +.... ..
T Consensus 139 ----c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~---~~~~~---~~ 207 (450)
T d1qsaa1 139 ----CDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VLTFA---RT 207 (450)
T ss_dssp ----HHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HHHHH---HH
T ss_pred ----HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHh---HHHHH---hc
Confidence 122333333333 23333334445555566777777777766654333333333333221111 11111 11
Q ss_pred cCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCH
Q 004425 559 EGFAPDDISILGVLQACIY--SGLSEGGICLFNEIEQIYGLRPILE--HFACMVDLLGRAGRLSEAMNLINSSP-FSESP 633 (754)
Q Consensus 559 ~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 633 (754)
..++......+..++.+ ..+.+.+..++........+.++.. ....+...+...+..+.|...+.... ...+.
T Consensus 208 --~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 285 (450)
T d1qsaa1 208 --TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST 285 (450)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH
T ss_pred --CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccch
Confidence 11222222222222222 2345555555555544322222211 11122222233444555555544331 11233
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
.....+++.....++...+...++.+-.-....+...+-++..+...|+-++|...++..
T Consensus 286 ~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~ 345 (450)
T d1qsaa1 286 SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQL 345 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence 322333333344456665555555443222223344455666666666666666666554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.92 E-value=0.91 Score=34.29 Aligned_cols=141 Identities=9% Similarity=0.024 Sum_probs=97.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSE 619 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 619 (754)
+.-.|..++..+++.+.... .+..-|+-++--....-+-+-..+.++.+-+-+.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 34568888888888887763 244456666666666666666666666664322222 3444554
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004425 620 AMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 620 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 699 (754)
....+-.+. -+.....--+....++|+-+.-..+++.+++-+.-+|.....++++|.+.|...++-+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444444432 233445556677788899999999999988866667899999999999999999999999999999986
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.08 E-value=0.31 Score=37.38 Aligned_cols=72 Identities=8% Similarity=-0.100 Sum_probs=46.1
Q ss_pred cHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 602 EHFACMVDLLGRAG---RLSEAMNLINSS-PFSE-S-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 602 ~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
.+--.++-++.+.. +.++++.++++. ...| + ...|-.|.-+|.+.|++++|.+.++++++++|+|..+....
T Consensus 36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 33334444444332 234555555543 1123 3 35677788888899999999999999999999987664443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.82 E-value=0.79 Score=35.93 Aligned_cols=47 Identities=9% Similarity=-0.114 Sum_probs=24.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 004425 544 GLGKGALLLFEEMKREGFAPDDISILGVLQACIY----SGLSEGGICLFNEIEQ 593 (754)
Q Consensus 544 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~ 593 (754)
.+.++|+++|++..+.| +......|...|.+ ..+.++|.++|++..+
T Consensus 73 ~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 123 (133)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 34556666666665544 22333333333333 2456666666666655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=89.45 E-value=3.3 Score=31.21 Aligned_cols=137 Identities=9% Similarity=-0.034 Sum_probs=78.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
.|..++..++..+.... .+..-|+-++--....-+-+...+.++.+-+. .|. .+|+++......
T Consensus 15 dG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~C 78 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 78 (161)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHHH
Confidence 67777777777776653 23344554554444444444444444443221 111 123333333333
Q ss_pred HhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 004425 522 FKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGL 597 (754)
Q Consensus 522 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 597 (754)
+-.+. .+....+.-++.+.+.|+-+.-.++++.+.+ +-+|+......+..||.+.|...++.+++.++.+ .|+
T Consensus 79 ~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe-~G~ 151 (161)
T d1wy6a1 79 GVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK-KGE 151 (161)
T ss_dssp HHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTC
T ss_pred HHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-HhH
Confidence 32222 1222344456677778888877788777666 3466777777788888888888888888888777 355
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=86.44 E-value=15 Score=35.32 Aligned_cols=350 Identities=10% Similarity=-0.018 Sum_probs=191.8
Q ss_pred HHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHH
Q 004425 301 IVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELG 380 (754)
Q Consensus 301 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 380 (754)
.+..+.+.+++......+..-+ .+...-.....+....|+..+|...+..+-..|.. ... ..
T Consensus 78 ~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~----------------~c 139 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPN----------------AC 139 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCT----------------HH
T ss_pred HHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-Cch----------------HH
Confidence 3455667777777665554322 24444456777888889988888887776655422 111 22
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC
Q 004425 381 LQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGM 460 (754)
Q Consensus 381 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~ 460 (754)
..++..+.+.|. .+...+-.-+......|+...|..+...+...........+..... ........ .. .
T Consensus 140 ~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~--p~~~~~~~------~~--~ 208 (450)
T d1qsaa1 140 DKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN--PNTVLTFA------RT--T 208 (450)
T ss_dssp HHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC--GGGHHHHH------HH--S
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC--hHhHHHHH------hc--C
Confidence 234444444433 2333333444555667888888888887765544444444444333 22222211 11 1
Q ss_pred CCCHHHHHHHHHHHhc--ccchHHHHHHHHHHHHhCCCCchhHH---HHHHHHHHhcCCHHHHHHHHhccC--CCChhHH
Q 004425 461 EPDPVTFSRLLSLSAS--QACLVRGRSLHAYSIKTGYAADVIVG---NALITMYAKCGSIDGAFQIFKGIS--DRDIVSW 533 (754)
Q Consensus 461 ~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 533 (754)
.++......+..+..+ ..+.+.+..++............... ..+...+...+..+.+...+.... ..+....
T Consensus 209 ~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 288 (450)
T d1qsaa1 209 GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLI 288 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHH
T ss_pred CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHH
Confidence 2333333333333333 24566677777776654322221111 112222233455666666665442 2333333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh
Q 004425 534 NAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR 613 (754)
Q Consensus 534 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 613 (754)
.-.+......+++..+...++.|... ..-...-.--+..++...|+.++|..+|..+.. .++ .|..|..- +
T Consensus 289 ~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~ 359 (450)
T d1qsaa1 289 ERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--R 359 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--H
T ss_pred HHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--H
Confidence 33444556678999999988877431 111223334566888999999999999998843 233 45544322 1
Q ss_pred cCCHHHHHHHH-HhCCCCCC-HHHH---HHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 004425 614 AGRLSEAMNLI-NSSPFSES-PLLW---RTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 614 ~g~~~~A~~~~-~~~~~~p~-~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 688 (754)
.|..- .+- ...+..++ ...- ..-+..+...|....|.+-+..+.+.- ++.-...++.+..+.|.++.|+.
T Consensus 360 Lg~~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~ 434 (450)
T d1qsaa1 360 IGEEY---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQ 434 (450)
T ss_dssp TTCCC---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCC---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHH
Confidence 22110 000 01111111 1111 122455667899999999998887543 45678889999999999999998
Q ss_pred HHHHH
Q 004425 689 VRTTM 693 (754)
Q Consensus 689 ~~~~m 693 (754)
...+.
T Consensus 435 a~~~~ 439 (450)
T d1qsaa1 435 ATIAG 439 (450)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87764
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.76 E-value=2.8 Score=29.91 Aligned_cols=63 Identities=13% Similarity=-0.000 Sum_probs=49.0
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHH
Q 004425 139 DYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLIS 202 (754)
Q Consensus 139 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 202 (754)
+.-++.+-++.+......|++....+.|++|.+.+|+..|.++++.++... .++..+|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 556677778888888899999999999999999999999999998877543 334456665553
|