Citrus Sinensis ID: 004470
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 751 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WVK7 | 741 | Pentatricopeptide repeat- | yes | no | 0.940 | 0.952 | 0.613 | 0.0 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.857 | 0.862 | 0.304 | 3e-95 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.728 | 0.750 | 0.305 | 1e-89 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.829 | 0.818 | 0.308 | 2e-82 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.621 | 0.752 | 0.314 | 3e-80 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.808 | 0.553 | 0.294 | 4e-80 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.647 | 0.762 | 0.312 | 2e-79 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.743 | 0.882 | 0.293 | 2e-79 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.721 | 0.718 | 0.302 | 3e-79 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.728 | 0.868 | 0.293 | 4e-79 |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/707 (61%), Positives = 552/707 (78%), Gaps = 1/707 (0%)
Query: 38 LSQRSFALGS-TNTRPFPDYSPKRPTIRDSEIVHQISTAIKLRCSEPLRHTLKPFESKFR 96
L R + + T+TRPFPDYSPK+ ++RD+E VHQI+ IKLR +EPLR +LKP+E KF+
Sbjct: 27 LQSRGLSFSTLTDTRPFPDYSPKKASVRDTEFVHQITNVIKLRRAEPLRRSLKPYECKFK 86
Query: 97 SDHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFW 156
+DHLIWVLM I+ DYRLVLDFFDWA RR+ LE+ CIV+ ++VA+KDLK A LI FW
Sbjct: 87 TDHLIWVLMKIKCDYRLVLDFFDWARSRRDSNLESLCIVIHLAVASKDLKVAQSLISSFW 146
Query: 157 AKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGL 216
+P L+ + +F F + L+YTYKDWGSDP VFD+FFQVLV+ L EAR++FEK+LNYGL
Sbjct: 147 ERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGL 206
Query: 217 VISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAH 276
V+SVDSCN++L+RLS C + F EFPE+G+CWN ASYNI+IH +C+ G+IKEAH
Sbjct: 207 VLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAH 266
Query: 277 LLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLL 336
LLL MEL+G +PDV+S+ST++NGYC GEL +V KLIE M+ KGLKPN Y Y S++ LL
Sbjct: 267 HLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLL 326
Query: 337 CKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDL 396
C+ K+ EAE EM+ QGI+PD V+YTTLIDGFCK G++ AA + F EM +I PD+
Sbjct: 327 CRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDV 386
Query: 397 LTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNN 456
LTYTAII GFC G MVEA KLFHEM +GLEPD + +T LI+GYCKAG MK AF +HN+
Sbjct: 387 LTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNH 446
Query: 457 MVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGN 516
M+ +PNVVTYT L DGLCK G+L++ANELLHEM + GLQ NI+TYNSIVNGLCK+GN
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506
Query: 517 ILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNV 576
I +AVKL+ + E AG + DT TYTT+MDAYCKSGEM KA E+L++ML KGLQP++VTFNV
Sbjct: 507 IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNV 566
Query: 577 LMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG 636
LMNGFC+ GM+EDGEKLL WML KG+ PNA T+N L+KQ+C+RN+++ IYK MC++G
Sbjct: 567 LMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRG 626
Query: 637 ITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR 696
+ PDG TY L++GHCKARNMKEAWFL +EM KGF+++ S+Y+ LIKGFLKRKK+LEAR
Sbjct: 627 VGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAR 686
Query: 697 ELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743
E+F++MRR GL AD+EI+ FF D ++ + ++ D IE YLV
Sbjct: 687 EVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIENYLV 733
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (897), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 213/700 (30%), Positives = 348/700 (49%), Gaps = 56/700 (8%)
Query: 86 HTLKPFESKFRSDHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDL 145
+ L + F + +L+ ++D L+L F +WA + L +CI + I K
Sbjct: 37 YQLHHLSANFTPEAASNLLLKSQNDQALILKFLNWANPHQFFTLRCKCITLHILTKFKLY 96
Query: 146 KTAHGLIHDFWAKPNLD--ASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNE 203
KTA L D AK D AS+ F E TY S VFD+ + +++
Sbjct: 97 KTAQILAEDVAAKTLDDEYASLVFKSLQE----TYDLCYSTSSVFDLVVKSYSRLSLIDK 152
Query: 204 ARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMI 263
A + +G + V S N L + + F E E + N +YNI+I
Sbjct: 153 ALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILI 212
Query: 264 HCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLK 323
C G I A L +ME +GC P+VV+++T+I+GYC L ++ KL+ M +KGL+
Sbjct: 213 RGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLE 272
Query: 324 PNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRL 383
PN +YN V+ LC+ ++ E +L EM +G D V Y TLI G+CK GN A +
Sbjct: 273 PNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVM 332
Query: 384 FDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCK 443
EM + P ++TYT++I C G M A + +M RGL P+E YT L+DG+ +
Sbjct: 333 HAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQ 392
Query: 444 AGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYT 503
G M +A+ + M +P+VVTY AL +G C +G++E A +L +M KGL ++ +
Sbjct: 393 KGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVS 452
Query: 504 YNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDML 563
Y+++++G C++ ++ +A+++ +M G PDT TY++++ +C+ +A +L +ML
Sbjct: 453 YSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEML 512
Query: 564 DKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIK--------- 614
GL P T+ L+N +CM G +E +L M+EKG+ P+ TY+ LI
Sbjct: 513 RVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTR 572
Query: 615 -------------------------QHCLRNDMRTTAKIYKGMCAQGI------------ 637
++C + ++ + KG C +G+
Sbjct: 573 EAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESML 632
Query: 638 ----TPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYL 693
PDG YNI++ GHC+A ++++A+ L+KEMV+ GF L T + AL+K K K
Sbjct: 633 GKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVN 692
Query: 694 EARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLEL 733
E + + R +++ E V+IN EGN ++ L++
Sbjct: 693 ELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDV 732
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 331 bits (849), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/585 (30%), Positives = 306/585 (52%), Gaps = 38/585 (6%)
Query: 163 ASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDS 222
+ ++ V L T+ + GS+ VFD+ + V+ARKL EA + F L + G +S+D+
Sbjct: 143 SGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDA 202
Query: 223 CNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQM 282
CN + L + + + E G+ N + NIM++ LC+ GK+++ L Q+
Sbjct: 203 CNALIGSLVRI-GWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQV 261
Query: 283 ELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKV 342
+ +G PD+V+++T+I+ Y G ++ +L+ M KG P YTYN+V+ LCK K
Sbjct: 262 QEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKY 321
Query: 343 VEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAI 402
A+ + EM+ G+ PD+ Y +L+ CK G+V ++F +MR +++PDL+ ++++
Sbjct: 322 ERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSM 381
Query: 403 ICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRL 462
+ F +G + +A F+ + GL PD ++YT LI GYC+ G + A +L N M+
Sbjct: 382 MSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGC 441
Query: 463 TPNVVTY-----------------------------------TALADGLCKSGELETANE 487
+VVTY T L DG CK G L+ A E
Sbjct: 442 AMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAME 501
Query: 488 LLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYC 547
L +M K ++L++ TYN++++G K G+I A ++ DM P +Y+ +++A C
Sbjct: 502 LFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALC 561
Query: 548 KSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAA 607
G + +A + +M+ K ++P+V+ N ++ G+C SG DGE L+ M+ +G P+
Sbjct: 562 SKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCI 621
Query: 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQ--GITPDGNTYNILLQGHCKARNMKEAWFLHK 665
+YN LI +M + K M + G+ PD TYN +L G C+ MKEA + +
Sbjct: 622 SYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLR 681
Query: 666 EMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710
+M+++G N S+Y +I GF+ + EA + +EM + G D
Sbjct: 682 KMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (787), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 198/642 (30%), Positives = 326/642 (50%), Gaps = 19/642 (2%)
Query: 101 IWV---LMDIRSDYRLVLDFFDWACLRR--EPILEARCIVVQISVAAKDLKTAHGLIHDF 155
IWV L++++ D +L FF W+ R + +E+ CIV I A+ A+ ++ +
Sbjct: 109 IWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKE- 167
Query: 156 WAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYG 215
+ S A + L T VFD F VL++ L EA + F K+ +
Sbjct: 168 -----MVLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFR 222
Query: 216 LVISVDSCNLFLSR---LSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKI 272
+ SCN L R L T D V + F + G +YNIMI C+C+ G +
Sbjct: 223 VFPKTRSCNGLLHRFAKLGKTDD----VKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDV 278
Query: 273 KEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSV 332
+ A L +M+ RG PD V+++++I+G+ +G L + EEM+ +P+ TYN++
Sbjct: 279 EAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNAL 338
Query: 333 VRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNI 392
+ CK K+ REM G+ P+ V Y+TL+D FCK G + A + + +MR + +
Sbjct: 339 INCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 398
Query: 393 IPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFS 452
+P+ TYT++I C G + +A +L +EML G+E + + YTALIDG C A MK+A
Sbjct: 399 VPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEE 458
Query: 453 LHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLC 512
L M + PN+ +Y AL G K+ ++ A ELL+E+ +G++ ++ Y + + GLC
Sbjct: 459 LFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLC 518
Query: 513 KAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVV 572
I A +M +M+ G ++ YTT+MDAY KSG + LL +M + ++ +VV
Sbjct: 519 SLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVV 578
Query: 573 TFNVLMNGFCMSGMIEDGEKLLKWMLEK-GLKPNAATYNPLIKQHCLRNDMRTTAKIYKG 631
TF VL++G C + ++ + GL+ NAA + +I C N + +++
Sbjct: 579 TFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQ 638
Query: 632 MCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKK 691
M +G+ PD Y L+ G+ K N+ EA L +M + G L +Y +L+ G +
Sbjct: 639 MVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQ 698
Query: 692 YLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLEL 733
+AR EEM G+ D + + ++E G + +EL
Sbjct: 699 LQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 740
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (767), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 153/487 (31%), Positives = 273/487 (56%)
Query: 234 CDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVS 293
C L + + + +LG +T +++ +I+ LC G++ EA L+ +M G P +++
Sbjct: 120 CRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLIT 179
Query: 294 FSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMM 353
+ ++NG C G++ + LI+ M G +PN TY V++++CK+ + A +LR+M
Sbjct: 180 LNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKME 239
Query: 354 NQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMV 413
+ I D V Y+ +IDG CK G++ A+ LF+EM D++ YT +I GFC G+
Sbjct: 240 ERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWD 299
Query: 414 EAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALA 473
+ KL +M+ R + PD + ++ALID + K G +++A LH M+ ++P+ VTYT+L
Sbjct: 300 DGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLI 359
Query: 474 DGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFH 533
DG CK +L+ AN +L M KG NI T+N ++NG CKA I ++L M + G
Sbjct: 360 DGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVV 419
Query: 534 PDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKL 593
DT TY T++ +C+ G++ A EL ++M+ + ++P +V++ +L++G C +G E ++
Sbjct: 420 ADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEI 479
Query: 594 LKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK 653
+ + + ++ + YN +I C + + ++ + +G+ PD TYNI++ G CK
Sbjct: 480 FEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCK 539
Query: 654 ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREI 713
++ EA L ++M + G + +YN LI+ L ++ +L EE++R G D
Sbjct: 540 KGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDAST 599
Query: 714 YYFFVDI 720
VD+
Sbjct: 600 VKMVVDM 606
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 300 bits (767), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 193/655 (29%), Positives = 327/655 (49%), Gaps = 48/655 (7%)
Query: 112 RLVLDFFDWAC----LRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAF 167
+L L F W L + I++ CI I V A+ A ++ + +S F
Sbjct: 51 KLALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSG-KSSFVF 109
Query: 168 THFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFL 227
L+ TY+ S+P V+DI +V + + ++ ++F + YG SV +CN L
Sbjct: 110 G----ALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAIL 165
Query: 228 SRLSNTCDGLRMVVKSF-TEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRG 286
+ + G + V SF E + IC + A++NI+I+ LC G +++ L+ +ME G
Sbjct: 166 GSVVKS--GEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSG 223
Query: 287 CSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAE 346
+P +V+++T+++ YC G + ++L++ M+ KG+ + TYN ++ LC+++++ +
Sbjct: 224 YAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGY 283
Query: 347 TILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGF 406
+LR+M + I P+ V Y TLI+GF G V A +L +EM + P+ +T+ A+I G
Sbjct: 284 LLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGH 343
Query: 407 CLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNV 466
G EA K+F+ M +GL P E+ Y L+DG CK A + M +
Sbjct: 344 ISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGR 403
Query: 467 VTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGN---------- 516
+TYT + DGLCK+G L+ A LL+EM + G+ +I TY++++NG CK G
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCR 463
Query: 517 -------------------------ILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGE 551
+ +A+++ E M + G D FT+ ++ + CK+G+
Sbjct: 464 IYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK 523
Query: 552 MVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNP 611
+ +A E +R M G+ P+ V+F+ L+NG+ SG + M + G P TY
Sbjct: 524 VAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGS 583
Query: 612 LIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKG 671
L+K C +R K K + A D YN LL CK+ N+ +A L EMVQ+
Sbjct: 584 LLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRS 643
Query: 672 FNLTTSSYNALIKGFLKRKKYLEARELFEEMR-RGGLVADREIYYFFVDINFEEG 725
+ +Y +LI G ++ K + A +E RG ++ ++ +Y FVD F+ G
Sbjct: 644 ILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAG 698
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (762), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 152/487 (31%), Positives = 271/487 (55%)
Query: 234 CDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVS 293
C L + + + +LG NT +++ +I+ LC G++ EA L+ +M G PD+++
Sbjct: 136 CRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLIT 195
Query: 294 FSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMM 353
+T++NG C G+ + LI++M G +PN TY V+ ++CK+ + A +LR+M
Sbjct: 196 INTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKME 255
Query: 354 NQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMV 413
+ I D V Y+ +IDG CK G++ A+ LF+EM I +++TY +I GFC G+
Sbjct: 256 ERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWD 315
Query: 414 EAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALA 473
+ KL +M+ R + P+ + ++ LID + K G +++A LH M+H + P+ +TYT+L
Sbjct: 316 DGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLI 375
Query: 474 DGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFH 533
DG CK L+ AN+++ M KG NI T+N ++NG CKA I ++L M + G
Sbjct: 376 DGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVV 435
Query: 534 PDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKL 593
DT TY T++ +C+ G++ A EL ++M+ + + P++VT+ +L++G C +G E ++
Sbjct: 436 ADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEI 495
Query: 594 LKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK 653
+ + + ++ + YN +I C + + ++ + +G+ P TYNI++ G CK
Sbjct: 496 FEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCK 555
Query: 654 ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREI 713
+ EA L ++M + G +YN LI+ L ++ +L EE++R G D
Sbjct: 556 KGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDAST 615
Query: 714 YYFFVDI 720
+D+
Sbjct: 616 IKMVIDM 622
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 297 bits (761), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 164/559 (29%), Positives = 292/559 (52%), Gaps = 1/559 (0%)
Query: 189 DIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFP 248
+I L + K+++A LF ++ S+ N LS ++ + +V+ +
Sbjct: 52 EILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKM-NKFELVISLGEQMQ 110
Query: 249 ELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQ 308
LGI + +Y+I I+C CR ++ A +L +M G PD+V+ S+++NGYC+ +
Sbjct: 111 TLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRIS 170
Query: 309 RVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLI 368
+ L+++M G KP+ +T+ +++ L +K EA ++ +M+ +G PD V Y T++
Sbjct: 171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVV 230
Query: 369 DGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLE 428
+G CK G++ A L +M I D++ Y II G C M +A LF EM +G+
Sbjct: 231 NGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIR 290
Query: 429 PDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANEL 488
PD Y++LI C G A L ++M+ ++ PNVVT++AL D K G+L A +L
Sbjct: 291 PDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 350
Query: 489 LHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCK 548
EM ++ + +I+TY+S++NG C + +A + E M P+ TY+T++ +CK
Sbjct: 351 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCK 410
Query: 549 SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAAT 608
+ + + EL R+M +GL + VT+ L++GF + ++ + + K M+ G+ PN T
Sbjct: 411 AKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILT 470
Query: 609 YNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMV 668
YN L+ C + +++ + + PD TYNI+++G CKA +++ W L +
Sbjct: 471 YNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLS 530
Query: 669 QKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTE 728
KG + +YN +I GF ++ EA L ++M+ G + + Y + +G+ E
Sbjct: 531 LKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDRE 590
Query: 729 ITLELCDAAIECYLVGKAT 747
+ EL C G A+
Sbjct: 591 ASAELIKEMRSCGFAGDAS 609
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 174/575 (30%), Positives = 288/575 (50%), Gaps = 33/575 (5%)
Query: 136 VQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKD--------------- 180
Q + + L +I +F KP+ THF R++ D
Sbjct: 129 AQFELQDEILSVVDWMIDEFGLKPD-------THFYNRMLNLLVDGNSLKLVEISHAKMS 181
Query: 181 -WGSDPHV--FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRL--SNTCD 235
WG P V F++ + L A +L A + E + +YGLV + + D
Sbjct: 182 VWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLD 241
Query: 236 GLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELR-GCSPDVVSF 294
G + + EF G W+ S N+++H C+ G++++A + +M + G PD +F
Sbjct: 242 GALRIREQMVEF---GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298
Query: 295 STIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMN 354
+T++NG C G ++ +++++ M +G P+ YTYNSV+ LCK +V EA +L +M+
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 358
Query: 355 QGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVE 414
+ P+ V Y TLI CK V A L + I+PD+ T+ ++I G CLT
Sbjct: 359 RDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRV 418
Query: 415 AEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALAD 474
A +LF EM +G EPDE Y LID C G + +A ++ M +V+TY L D
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478
Query: 475 GLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHP 534
G CK+ + A E+ EM G+ N TYN++++GLCK+ + A +LM+ M + G P
Sbjct: 479 GFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP 538
Query: 535 DTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLL 594
D +TY +++ +C+ G++ KA ++++ M G +P +VT+ L++G C +G +E KLL
Sbjct: 539 DKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598
Query: 595 KWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG-ITPDGNTYNILLQGHCK 653
+ + KG+ YNP+I+ + +++ M Q PD +Y I+ +G C
Sbjct: 599 RSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCN 658
Query: 654 ARN-MKEAWFLHKEMVQKGFNLTTSSYNALIKGFL 687
++EA E+++KGF SS L +G L
Sbjct: 659 GGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLL 693
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 296 bits (758), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 161/548 (29%), Positives = 288/548 (52%), Gaps = 1/548 (0%)
Query: 200 KLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASY 259
KL++A LF +++ S+ + LS ++ + +V+ + LGI N +Y
Sbjct: 61 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKM-NKFDVVISLGEQMQNLGIPHNHYTY 119
Query: 260 NIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQI 319
+I+I+C CR ++ A +L +M G P++V+ S+++NGYC+ + + L+++M +
Sbjct: 120 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV 179
Query: 320 KGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAA 379
G +PN T+N+++ L +K EA ++ M+ +G PD V Y +++G CK G+
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 239
Query: 380 AYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALID 439
A+ L ++M + P +L Y II G C M +A LF EM +G+ P+ + Y++LI
Sbjct: 240 AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299
Query: 440 GYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQL 499
C G A L ++M+ ++ P+V T++AL D K G+L A +L EM ++ +
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 359
Query: 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELL 559
+I TY+S++NG C + +A ++ E M PD TY T++ +CK + + E+
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 419
Query: 560 RDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLR 619
R+M +GL + VT+N+L+ G +G + +++ K M+ G+ PN TYN L+ C
Sbjct: 420 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 479
Query: 620 NDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSY 679
+ +++ + + P TYNI+++G CKA +++ W L + KG +Y
Sbjct: 480 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAY 539
Query: 680 NALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIE 739
N +I GF ++ EA LF+EM+ G + + Y + +G+ E + EL
Sbjct: 540 NTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRS 599
Query: 740 CYLVGKAT 747
C G A+
Sbjct: 600 CGFAGDAS 607
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 751 | ||||||
| 359473390 | 748 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.998 | 0.728 | 0.0 | |
| 356524104 | 742 | PREDICTED: pentatricopeptide repeat-cont | 0.938 | 0.950 | 0.690 | 0.0 | |
| 449449677 | 748 | PREDICTED: pentatricopeptide repeat-cont | 0.974 | 0.978 | 0.628 | 0.0 | |
| 449532420 | 748 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.974 | 0.978 | 0.625 | 0.0 | |
| 357521289 | 1320 | Tau class glutathione S-transferase [Med | 0.937 | 0.533 | 0.624 | 0.0 | |
| 4836917 | 1184 | similar to indole-3-acetate beta-glucosy | 0.926 | 0.587 | 0.620 | 0.0 | |
| 334182313 | 741 | uncharacterized UDP-glucosyltransferase | 0.940 | 0.952 | 0.613 | 0.0 | |
| 297848852 | 1164 | UDP-glucoronosyl/UDP-glucosyl transferas | 0.934 | 0.603 | 0.615 | 0.0 | |
| 255558280 | 604 | pentatricopeptide repeat-containing prot | 0.802 | 0.998 | 0.724 | 0.0 | |
| 296086456 | 648 | unnamed protein product [Vitis vinifera] | 0.773 | 0.896 | 0.591 | 0.0 |
| >gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1165 bits (3013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/750 (72%), Positives = 637/750 (84%), Gaps = 3/750 (0%)
Query: 1 MKRCTIFTFYHCLQPNTHHSNVGIFPHCLRFFFFRGYLSQRSFALGSTNTRPFPDYSPKR 60
MKR I HC Q ++HS++ P R FFR S++ + ST TR FPDYSPK+
Sbjct: 1 MKRHVISFSRHCFQVFSYHSHLD--PALNRLSFFRRCFSEKLSSFDST-TRNFPDYSPKK 57
Query: 61 PTIRDSEIVHQISTAIKLRCSEPLRHTLKPFESKFRSDHLIWVLMDIRSDYRLVLDFFDW 120
P I+DSE+VH+IS AIK R SEPLR LKP+ESKFR+DHLIWVLM+I++DYRLVL FF+W
Sbjct: 58 PIIQDSELVHRISIAIKQRRSEPLRRVLKPYESKFRADHLIWVLMNIKNDYRLVLSFFEW 117
Query: 121 ACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKD 180
ACLRR+P LEARCIV QI+ A+KDLK A LI DFW PNLD ++F HFVE+LIYTYKD
Sbjct: 118 ACLRRDPSLEARCIVAQIATASKDLKMARKLIQDFWVNPNLDVGVSFGHFVEQLIYTYKD 177
Query: 181 WGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMV 240
WGSDP VFDIFFQVLVEA L+EARKLF+K+LNYGL+ISVDSCNLF+S LS DG+++
Sbjct: 178 WGSDPRVFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIA 237
Query: 241 VKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIING 300
+K F EFPE+G+CWNTASYNI+ H LC+ G++ EAH LLLQMELRGC PDV+S+ST+ING
Sbjct: 238 LKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVING 297
Query: 301 YCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPD 360
YC +GELQRVLKLIEEMQIKGLKPNPYTYN V+ LLCKT KV EAE +LREM+++GI PD
Sbjct: 298 YCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPD 357
Query: 361 NVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFH 420
VIYTTLIDGFCK+GNV++AYRLFDEM+ I PD +TYTA+ICG C TG+++EA+KLFH
Sbjct: 358 GVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFH 417
Query: 421 EMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSG 480
EM+ + LEPDE+ YTALIDGYCK G MK+AFSLHN M+ M LTPN+VTYTALADGLCK G
Sbjct: 418 EMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCG 477
Query: 481 ELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYT 540
E++TANELLHEMCRKGL+LNIYTYNS+VNGLCKAGNI QAVKLM+DMEVAGFHPD TYT
Sbjct: 478 EVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYT 537
Query: 541 TIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEK 600
T+MDAYCKS EMV+AHELLR MLD+ LQP+VVTFNVLMNGFCMSGM+EDGEKLLKWMLEK
Sbjct: 538 TLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEK 597
Query: 601 GLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEA 660
G+ PNA TYN LIKQ+C+RN+MR T +IY+GMCA+G+ PDGNTYNIL++GHCKARNMKEA
Sbjct: 598 GIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEA 657
Query: 661 WFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDI 720
WFLH++MV KGFNLT SSYNALIKGF KRKK+LEARELFE+MRR GLVADREIY F DI
Sbjct: 658 WFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADI 717
Query: 721 NFEEGNTEITLELCDAAIECYLVGKATDEN 750
N++EG E+TLELCD AIE LVG +N
Sbjct: 718 NYDEGKMELTLELCDEAIEKCLVGDIQTKN 747
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1048 bits (2711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/705 (69%), Positives = 585/705 (82%)
Query: 42 SFALGSTNTRPFPDYSPKRPTIRDSEIVHQISTAIKLRCSEPLRHTLKPFESKFRSDHLI 101
S +LGS+N RPFPDYSP++P++ D++ VH IST IK R +EP R LKPFESKFR DHLI
Sbjct: 38 STSLGSSNARPFPDYSPRKPSVTDTDFVHHISTTIKQRRAEPFRRILKPFESKFRPDHLI 97
Query: 102 WVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNL 161
WVLM IR DY+LVLDFFDWA LRR+P LE+ CIVVQI+VA+KDL+ AH L+ +FW KP+L
Sbjct: 98 WVLMSIRDDYKLVLDFFDWARLRRDPSLESLCIVVQIAVASKDLRMAHRLVFEFWEKPHL 157
Query: 162 DASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVD 221
D +F F ERLIYTYKDWG+ P VFD+FFQVLVEA L EA KLF+KLLNYG+++SVD
Sbjct: 158 DVGNSFDRFTERLIYTYKDWGAHPLVFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVD 217
Query: 222 SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQ 281
SCNLFL+RLSN+ DG+R + F E+ E+G+CWNT SYNI++H LC+ GK+KEAH LL+Q
Sbjct: 218 SCNLFLARLSNSFDGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQ 277
Query: 282 MELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSK 341
ME RG PDVVS+S I++GYC + +L +VLKL+EE+Q KGLKPN YTYNS++ LCKT +
Sbjct: 278 MEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGR 337
Query: 342 VVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTA 401
VVEAE +LR M NQ I PDNV+YTTLI GF K GNV+ Y+LFDEM+ I+PD +TYT+
Sbjct: 338 VVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTS 397
Query: 402 IICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMR 461
+I G C GK+VEA KLF EML +GL+PDE+ YTALIDGYCKAG MK+AFSLHN MV
Sbjct: 398 MIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKG 457
Query: 462 LTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAV 521
LTPNVVTYTAL DGLCK GE++ ANELLHEM KGLQ N+ TYN+++NGLCK GNI QAV
Sbjct: 458 LTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAV 517
Query: 522 KLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGF 581
KLME+M++AGF PDT TYTTIMDAYCK GEM KAHELLR MLDKGLQP++VTFNVLMNGF
Sbjct: 518 KLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGF 577
Query: 582 CMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDG 641
CMSGM+EDGE+L+KWML+KG+ PNA T+N L+KQ+C+RN+MR T +IYKGM AQG+ PD
Sbjct: 578 CMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDT 637
Query: 642 NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEE 701
NTYNIL++GHCKARNMKEAWFLHKEMV+KGF+LT +SYN+LIKGF KRKK+ EAR+LFEE
Sbjct: 638 NTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEE 697
Query: 702 MRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLVGKA 746
MR G +A++EIY FVD+N+EEGN E TLELCD AIE LV K
Sbjct: 698 MRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCDEAIEKCLVKKT 742
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/740 (62%), Positives = 577/740 (77%), Gaps = 8/740 (1%)
Query: 2 KRCTIFTFYHCLQPNTHHSNVGIFPHCLRFFFFRGYLSQRSFALGS--TNTRPFPDYSPK 59
K C +F + CLQ +++ ++ F L FF R +L+Q S TRPFPDYSPK
Sbjct: 8 KLCVVFFRFSCLQVSSNSASRCNF---LPFFLSRRWLTQSQRVPSSFLLQTRPFPDYSPK 64
Query: 60 RPTIRDSEIVHQISTAIKLRCSEPLRHTLKPFESKFRSDHLIWVLMDIRSDYRLVLDFFD 119
+PTIRD+E++H I+ IKLR SEPL LK ES FR DHLIWVLM+I++DY LVL FFD
Sbjct: 65 KPTIRDTELIHDITAVIKLRRSEPLHRILKAHESNFRYDHLIWVLMNIKNDYNLVLAFFD 124
Query: 120 WACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYK 179
WA +RREP LEARCI++ I+V + DL+ AH L+HD++ L+ + T F RLIYTYK
Sbjct: 125 WARVRREPSLEARCIIIHIAVVSNDLRLAHELVHDYFLNSKLEIGVKMTQFTHRLIYTYK 184
Query: 180 DWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRM 239
WG +P FDIFFQVLVE L+EARKL +KLL+YGLV++VDSCN FLSR++N +G+ M
Sbjct: 185 YWGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEM 244
Query: 240 VVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIIN 299
+K F E+ GI WNT SYNI+I+ LCR GK+KEAH LL+QM+ R +PDVVS+ST+I+
Sbjct: 245 AIKVFCEY---GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVID 301
Query: 300 GYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVP 359
GYC+LGEL++ LKL+++MQIKGLKPN YTYNS++ LLCK K EAE +LREMM+Q I+P
Sbjct: 302 GYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIP 361
Query: 360 DNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLF 419
DNV+YTTLI GF K+G+V A + FDEM I PD +TYT +I GF GK++E + LF
Sbjct: 362 DNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLF 421
Query: 420 HEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKS 479
HEM+ RGL+PDE+ YT LID YCKAG M AFSLHN MV M +TPN+VTY AL DGLCK
Sbjct: 422 HEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKH 481
Query: 480 GELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTY 539
GEL+TANELL EM +KGLQLN+ YNS+VNG+CKAGNI QA+KLM++MEVAG PD TY
Sbjct: 482 GELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITY 541
Query: 540 TTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLE 599
TT++DAYC+ G++ KAH+LL++MLD+GLQP+VVTFNVLMNGFCM GM+EDG++LL WMLE
Sbjct: 542 TTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLE 601
Query: 600 KGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKE 659
KG+ P+A TYN L+KQHC+RN M TT KIYK M QG+ PD NTYNIL++GHCKARN+KE
Sbjct: 602 KGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKE 661
Query: 660 AWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVD 719
AWFL+KEM++KG+ T +SYNALIK F K+KK LEARELFEEMR GLVAD EIY FFVD
Sbjct: 662 AWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVD 721
Query: 720 INFEEGNTEITLELCDAAIE 739
+ +EEG+ EITL LCD AIE
Sbjct: 722 MCYEEGDVEITLNLCDEAIE 741
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 974 bits (2519), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/740 (62%), Positives = 577/740 (77%), Gaps = 8/740 (1%)
Query: 2 KRCTIFTFYHCLQPNTHHSNVGIFPHCLRFFFFRGYLSQRSFALGS--TNTRPFPDYSPK 59
K C +F + CLQ +++ ++ F L FF R +L+Q S TRPFPDYSPK
Sbjct: 8 KLCVVFFRFSCLQVSSNSASRCNF---LPFFLSRRWLTQSQRVPSSFLLQTRPFPDYSPK 64
Query: 60 RPTIRDSEIVHQISTAIKLRCSEPLRHTLKPFESKFRSDHLIWVLMDIRSDYRLVLDFFD 119
+PTIRD+E++H I+ IKLR SEPL LK ES FR DHLIWVLM+I++DY LVL FFD
Sbjct: 65 KPTIRDTELIHDITAVIKLRRSEPLHRILKAHESNFRYDHLIWVLMNIKNDYNLVLAFFD 124
Query: 120 WACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYK 179
WA +RREP LEARCI++ I+V + DL+ AH L+HD++ L+ + T F RLIYTYK
Sbjct: 125 WARVRREPSLEARCIIIHIAVVSNDLRLAHELVHDYFLNSKLEIGVKMTQFTHRLIYTYK 184
Query: 180 DWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRM 239
WG +P FDIFFQVLVE L+EARKL +KLL+YGLV++VDSCN FLSR++N +G+ M
Sbjct: 185 YWGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEM 244
Query: 240 VVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIIN 299
+K F E+ GI WNT SYNI+I+ LCR GK+KEAH LL+QM+ R +PDVVS+ST+I+
Sbjct: 245 AIKVFCEY---GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVID 301
Query: 300 GYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVP 359
GYC+LGEL++ LKL+++MQIKGLKPN YTYNS++ LLCK K EAE +LREMM+Q I+P
Sbjct: 302 GYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIP 361
Query: 360 DNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLF 419
DNV+YTTLI GF K+G+V A + FDEM I PD +TYT +I GF GK++E + LF
Sbjct: 362 DNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLF 421
Query: 420 HEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKS 479
HEM+ RGL+PDE+ YT LID YCKAG M AFSLHN MV M +TPN+VTY AL DGLCK
Sbjct: 422 HEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKH 481
Query: 480 GELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTY 539
GEL+TANELL EM +KGLQLN+ YNS+VNG+CKAGNI QA+KLM++MEVAG PD TY
Sbjct: 482 GELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITY 541
Query: 540 TTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLE 599
TT++DAYC+ G++ KAH+LL++MLD+GLQP+VVTFNVLMNGFCM GM+EDG++LL WMLE
Sbjct: 542 TTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLE 601
Query: 600 KGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKE 659
KG+ P+A TYN L+KQHC+RN M TT KIYK M QG+ PD NTYNIL++GHCKARN+KE
Sbjct: 602 KGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKE 661
Query: 660 AWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVD 719
AWFL+KEM++KG+ T +SYNALIK F K++K+ EARELFEEMR GLVAD EIY FFVD
Sbjct: 662 AWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVD 721
Query: 720 INFEEGNTEITLELCDAAIE 739
+ +EEG+ EITL LCD AIE
Sbjct: 722 MCYEEGDVEITLNLCDEAIE 741
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula] gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/719 (62%), Positives = 582/719 (80%), Gaps = 15/719 (2%)
Query: 47 STNTRPFPDYSPKRPTIRDSEIVHQISTAIKLRCSEPLRHTLKPFESKFRSDHLIWVLMD 106
ST RPFPDYSP+ P+I D+++V +++T +K R EP R LKP+ES+F+ HLIWVL++
Sbjct: 29 STTPRPFPDYSPRNPSISDTDLVRRVTTTLKRRHLEPFRRVLKPYESRFKPSHLIWVLIN 88
Query: 107 IRSDYRLVLDFFDWACLRRE----PILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLD 162
+++DY LVL+ F+WA + + P LE+ CIVV +SVA+ D++TA L+ +F AKP +D
Sbjct: 89 LKNDYPLVLNLFNWAKSQSQQQFHPTLESLCIVVHLSVASNDIQTAKRLVFEFCAKPKID 148
Query: 163 ASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDS 222
S +F F E LIYTYKDWGS P VFD++FQVLVE + EA+KLF KLL YG+V+SVDS
Sbjct: 149 VSKSFHLFTEMLIYTYKDWGSHPLVFDLYFQVLVENGFVLEAQKLFHKLLRYGVVVSVDS 208
Query: 223 CNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQM 282
CNLFLSRLS +G+++ VK F EFPELG+CWNT S NI++HCLC+ GK++EAH LL+QM
Sbjct: 209 CNLFLSRLSCNFEGIKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQM 268
Query: 283 ELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKV 342
RG PDVVS+ +++GYC +GEL +VLKL++E++ KGLKP+ Y YN+++ LLCK +V
Sbjct: 269 TDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEV 328
Query: 343 VEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAI 402
VEAE +LR M G+ PDNV+YTT+I GFCK+GNV+AA +LFDEMR I+PD++TYT++
Sbjct: 329 VEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSV 388
Query: 403 ICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRL 462
I G C +GKMVEA ++F+EML +GLEPDE+ YTALIDGYCKAG MK+AFS+HN MV L
Sbjct: 389 IHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGL 448
Query: 463 TPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVK 522
TPNVVTYTALADGLCK+GE++ ANELLHEM RKGLQ N+YTYN+IVNGLCK GNI Q VK
Sbjct: 449 TPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVK 508
Query: 523 LMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFC 582
LME+M++AGF+PDT TYTT+MDAYCK GEM KAHELLR ML+K LQP++VTFNVLMNGFC
Sbjct: 509 LMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFC 568
Query: 583 MSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGN 642
MSGM+EDGE+L++WMLEKG+ PNA T+N L+KQ+C++N+MR T +IYK M +G+ PD N
Sbjct: 569 MSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSN 628
Query: 643 TYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEM 702
TYNIL++GHCKARNMKEAWFLHKEMV+KG+++T ++Y+ALI+GF KRKK++EAR+LFEEM
Sbjct: 629 TYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEM 688
Query: 703 RRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIE-----------CYLVGKATDEN 750
R+ GLVA+++IY FVD+N+EEGN EITLELCD + C+ +G + + N
Sbjct: 689 RKHGLVAEKDIYDIFVDVNYEEGNWEITLELCDEFMTELSGTIFVVYICFFIGGSVESN 747
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2441), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/696 (62%), Positives = 548/696 (78%)
Query: 48 TNTRPFPDYSPKRPTIRDSEIVHQISTAIKLRCSEPLRHTLKPFESKFRSDHLIWVLMDI 107
T+TRPFPDYSPK+ ++RD+E VHQI+ IKLR +EPLR +LKP+E KF++DHLIWVLM I
Sbjct: 481 TDTRPFPDYSPKKASVRDTEFVHQITNVIKLRRAEPLRRSLKPYECKFKTDHLIWVLMKI 540
Query: 108 RSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAF 167
+ DYRLVLDFFDWA RR+ LE+ CIV+ ++VA+KDLK A LI FW +P L+ + +F
Sbjct: 541 KCDYRLVLDFFDWARSRRDSNLESLCIVIHLAVASKDLKVAQSLISSFWERPKLNVTDSF 600
Query: 168 THFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFL 227
F + L+YTYKDWGSDP VFD+FFQVLV+ L EAR++FEK+LNYGLV+SVDSCN++L
Sbjct: 601 VQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYL 660
Query: 228 SRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGC 287
+RLS C + F EFPE+G+CWN ASYNI+IH +C+ G+IKEAH LLL MEL+G
Sbjct: 661 TRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGY 720
Query: 288 SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAET 347
+PDV+S+ST++NGYC GEL +V KLIE M+ KGLKPN Y Y S++ LLC+ K+ EAE
Sbjct: 721 TPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEE 780
Query: 348 ILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFC 407
EM+ QGI+PD V+YTTLIDGFCK G++ AA + F EM +I PD+LTYTAII GFC
Sbjct: 781 AFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFC 840
Query: 408 LTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVV 467
G MVEA KLFHEM +GLEPD + +T LI+GYCKAG MK AF +HN+M+ +PNVV
Sbjct: 841 QIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVV 900
Query: 468 TYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDM 527
TYT L DGLCK G+L++ANELLHEM + GLQ NI+TYNSIVNGLCK+GNI +AVKL+ +
Sbjct: 901 TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 960
Query: 528 EVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMI 587
E AG + DT TYTT+MDAYCKSGEM KA E+L++ML KGLQP++VTFNVLMNGFC+ GM+
Sbjct: 961 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGML 1020
Query: 588 EDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNIL 647
EDGEKLL WML KG+ PNA T+N L+KQ+C+RN+++ IYK MC++G+ PDG TY L
Sbjct: 1021 EDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENL 1080
Query: 648 LQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL 707
++GHCKARNMKEAWFL +EM KGF+++ S+Y+ LIKGFLKRKK+LEARE+F++MRR GL
Sbjct: 1081 VKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGL 1140
Query: 708 VADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743
AD+EI+ FF D ++ + ++ D IE YLV
Sbjct: 1141 AADKEIFDFFSDTKYKGKRPDTIVDPIDEIIENYLV 1176
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana] gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana] gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g05670, mitochondrial; Flags: Precursor gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana] gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana] gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/707 (61%), Positives = 552/707 (78%), Gaps = 1/707 (0%)
Query: 38 LSQRSFALGS-TNTRPFPDYSPKRPTIRDSEIVHQISTAIKLRCSEPLRHTLKPFESKFR 96
L R + + T+TRPFPDYSPK+ ++RD+E VHQI+ IKLR +EPLR +LKP+E KF+
Sbjct: 27 LQSRGLSFSTLTDTRPFPDYSPKKASVRDTEFVHQITNVIKLRRAEPLRRSLKPYECKFK 86
Query: 97 SDHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFW 156
+DHLIWVLM I+ DYRLVLDFFDWA RR+ LE+ CIV+ ++VA+KDLK A LI FW
Sbjct: 87 TDHLIWVLMKIKCDYRLVLDFFDWARSRRDSNLESLCIVIHLAVASKDLKVAQSLISSFW 146
Query: 157 AKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGL 216
+P L+ + +F F + L+YTYKDWGSDP VFD+FFQVLV+ L EAR++FEK+LNYGL
Sbjct: 147 ERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGL 206
Query: 217 VISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAH 276
V+SVDSCN++L+RLS C + F EFPE+G+CWN ASYNI+IH +C+ G+IKEAH
Sbjct: 207 VLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAH 266
Query: 277 LLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLL 336
LLL MEL+G +PDV+S+ST++NGYC GEL +V KLIE M+ KGLKPN Y Y S++ LL
Sbjct: 267 HLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLL 326
Query: 337 CKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDL 396
C+ K+ EAE EM+ QGI+PD V+YTTLIDGFCK G++ AA + F EM +I PD+
Sbjct: 327 CRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDV 386
Query: 397 LTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNN 456
LTYTAII GFC G MVEA KLFHEM +GLEPD + +T LI+GYCKAG MK AF +HN+
Sbjct: 387 LTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNH 446
Query: 457 MVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGN 516
M+ +PNVVTYT L DGLCK G+L++ANELLHEM + GLQ NI+TYNSIVNGLCK+GN
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506
Query: 517 ILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNV 576
I +AVKL+ + E AG + DT TYTT+MDAYCKSGEM KA E+L++ML KGLQP++VTFNV
Sbjct: 507 IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNV 566
Query: 577 LMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG 636
LMNGFC+ GM+EDGEKLL WML KG+ PNA T+N L+KQ+C+RN+++ IYK MC++G
Sbjct: 567 LMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRG 626
Query: 637 ITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR 696
+ PDG TY L++GHCKARNMKEAWFL +EM KGF+++ S+Y+ LIKGFLKRKK+LEAR
Sbjct: 627 VGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAR 686
Query: 697 ELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743
E+F++MRR GL AD+EI+ FF D ++ + ++ D IE YLV
Sbjct: 687 EVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIENYLV 733
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 941 bits (2432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/702 (61%), Positives = 550/702 (78%)
Query: 48 TNTRPFPDYSPKRPTIRDSEIVHQISTAIKLRCSEPLRHTLKPFESKFRSDHLIWVLMDI 107
T+TRPFPDYSPK+ ++RD+E VHQI+ IKLR +EPLR +LKP+E KF++DHLIWVLM I
Sbjct: 461 TDTRPFPDYSPKKASVRDTEFVHQITNVIKLRRAEPLRRSLKPYECKFKTDHLIWVLMKI 520
Query: 108 RSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAF 167
+ DYRLVLDFFDWA RR+ LE+ CIV+ ++VA+KDLK A LI FW +P L+ + +F
Sbjct: 521 KCDYRLVLDFFDWARSRRDSNLESLCIVIHLAVASKDLKVAQSLISSFWERPKLNVTESF 580
Query: 168 THFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFL 227
F + L+YTYKDWGSDP VFD+FFQVLVE L EARK+FEK+LNYGLV+SVDSCN++L
Sbjct: 581 VQFFDLLVYTYKDWGSDPRVFDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYL 640
Query: 228 SRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGC 287
+RLS C+ + F EFPE+G+CWN ASYNI+IH +C+ G+I EAH LLL MEL+G
Sbjct: 641 ARLSKDCNKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGY 700
Query: 288 SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAET 347
+PDV+S+ST+INGYC GEL +V KLIE+M+ KGLKPN YTY S++ LLC+ K+ EAE
Sbjct: 701 TPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEE 760
Query: 348 ILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFC 407
EM+ QGI+PD ++YTTL+DGFCK G++ AA + F EM +I PD+LTYTAII GFC
Sbjct: 761 AFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFC 820
Query: 408 LTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVV 467
G MVEA KLFHEML RGLEPD I +T L++GYCKAG +K AF +HN+M+ +PNVV
Sbjct: 821 QIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVV 880
Query: 468 TYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDM 527
TYT L DGLCK G+L++ANELLHEM + GLQ NI+TYNSIVNGLCK+GNI +AVKL+ +
Sbjct: 881 TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 940
Query: 528 EVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMI 587
E AG + DT TYTT+MDAYCKSGEM KA E+L +ML KGLQP++VTFNVLMNGFC+ GM+
Sbjct: 941 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGML 1000
Query: 588 EDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNIL 647
EDGEKLL WML KG+ PNA T+N L+KQ+C+RN+++ IYK MC++G+ PDG TY L
Sbjct: 1001 EDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENL 1060
Query: 648 LQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL 707
++GHC ARNMKEAWFL +EM KGF+++ S+Y+ LIKGF KRKK++EARE+F++MRR GL
Sbjct: 1061 VKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGL 1120
Query: 708 VADREIYYFFVDINFEEGNTEITLELCDAAIECYLVGKATDE 749
AD+EI+ FF D ++ + ++ D IE YLV + E
Sbjct: 1121 AADKEIFDFFSDTKYKGKRPDTIVDPIDEIIENYLVDEQLRE 1162
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/603 (72%), Positives = 520/603 (86%)
Query: 148 AHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKL 207
A +I DFWAKPNLD S +FTHFVERLIYTYKDWGSDPHVFD+FFQVLVEA LNEARK
Sbjct: 2 AREIICDFWAKPNLDISNSFTHFVERLIYTYKDWGSDPHVFDVFFQVLVEAGLLNEARKF 61
Query: 208 FEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267
F+KLLNYG+ +S SCNL+L+ LS+ D L MV+K F+EFP+LG+CWNT SYNI+++ L
Sbjct: 62 FDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLF 121
Query: 268 RFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPY 327
R GKI+EAH LL++ME +GC PDVVS++TII+GYC++GELQ+V++L++EMQ+KGLKPN Y
Sbjct: 122 RLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLY 181
Query: 328 TYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEM 387
TY+S++ LLCK+ KVVE E +LREMM +G+ PD+VIYTTLIDGFCK+GN AAY+LF EM
Sbjct: 182 TYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEM 241
Query: 388 RGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGM 447
I+PD + ++A+ICG +GK+VEA+KLF+EM+ +G EPDE+ YTALIDGYCK G M
Sbjct: 242 EAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEM 301
Query: 448 KKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSI 507
KKAF LHN MV + LTPNVVTYTALADGLCKSGEL+TANELLHEMCRKGLQLNI TYN+I
Sbjct: 302 KKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTI 361
Query: 508 VNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGL 567
VNGLCKAGNILQAVKLME+M+ AG HPDT TYTT+MDAY K+GEMVKA ELLR+MLD+GL
Sbjct: 362 VNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGL 421
Query: 568 QPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAK 627
QP+VVTFNVLMNG CMSG +EDGE+LLKWMLEKG+ PNAATYN ++KQ+C+RN+MR + +
Sbjct: 422 QPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTE 481
Query: 628 IYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFL 687
IY+GMCAQG+ PD NTYNIL++GHCKARNMKEAWFLHKEMV+K FNLT SSYNALIKGF
Sbjct: 482 IYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFF 541
Query: 688 KRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLVGKAT 747
KRKK LEAR+LFEEMRR GLVA EIY FVD+N+EEGN E TLELCD AIE L+ KA
Sbjct: 542 KRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIEKCLLDKAR 601
Query: 748 DEN 750
+ N
Sbjct: 602 NGN 604
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/637 (59%), Positives = 461/637 (72%), Gaps = 56/637 (8%)
Query: 125 REPILEARCIVVQISVAAKDLKTA--HGLIHDFWAKPNLDASIAFTHFVE---RLIYTYK 179
++PI++ +V +IS+A K ++ ++ + +K D I ++ RL+ ++
Sbjct: 56 KKPIIQDSELVHRISIAIKQRRSEPLRRVLKPYESKFRADHLIWVLMNIKNDYRLVLSFF 115
Query: 180 DWG---SDPHVFD--IFFQVLVEARKLNEARKLFEKL-LNYGLVISVDSCNLFLSRLSNT 233
+W DP + I Q+ ++ L ARKL + +N L +
Sbjct: 116 EWACLRRDPSLEARCIVAQIATASKDLKMARKLIQDFWVNPNLDV--------------- 160
Query: 234 CDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVS 293
G+ K F + G+ + S N+ I +HL S D+
Sbjct: 161 --GVSFARKLFDKMLNYGLLISVDSCNLFI-----------SHL----------SEDLDG 197
Query: 294 FSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMM 353
+ G + VLKLIEEMQIKGLKPNPYTYN V+ LLCKT KV EAE +LREM+
Sbjct: 198 IKIALKG-------EWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMI 250
Query: 354 NQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMV 413
++GI PD VIYTTLIDGFCK+GNV++AYRLFDEM+ I PD +TYTA+ICG C TG+++
Sbjct: 251 SEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVM 310
Query: 414 EAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALA 473
EA+KLFHEM+ + LEPDE+ YTALIDGYCK G MK+AFSLHN M+ M LTPN+VTYTALA
Sbjct: 311 EADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALA 370
Query: 474 DGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFH 533
DGLCK GE++TANELLHEMCRKGL+LNIYTYNS+VNGLCKAGNI QAVKLM+DMEVAGFH
Sbjct: 371 DGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFH 430
Query: 534 PDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKL 593
PD TYTT+MDAYCKS EMV+AHELLR MLD+ LQP+VVTFNVLMNGFCMSGM+EDGEKL
Sbjct: 431 PDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKL 490
Query: 594 LKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK 653
LKWMLEKG+ PNA TYN LIKQ+C+RN+MR T +IY+GMCA+G+ PDGNTYNIL++GHCK
Sbjct: 491 LKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCK 550
Query: 654 ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREI 713
ARNMKEAWFLH++MV KGFNLT SSYNALIKGF KRKK+LEARELFE+MRR GLVADREI
Sbjct: 551 ARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREI 610
Query: 714 YYFFVDINFEEGNTEITLELCDAAIECYLVGKATDEN 750
Y F DIN++EG E+TLELCD AIE LVG +N
Sbjct: 611 YNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTKN 647
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 751 | ||||||
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.766 | 0.790 | 0.297 | 1e-84 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.720 | 0.724 | 0.313 | 8.5e-81 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.669 | 0.667 | 0.324 | 3.9e-76 | |
| TAIR|locus:2195047 | 621 | AT1G12620 [Arabidopsis thalian | 0.661 | 0.800 | 0.317 | 1e-75 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.712 | 0.839 | 0.293 | 1e-75 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.728 | 0.868 | 0.293 | 1.7e-75 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.727 | 0.889 | 0.307 | 1.2e-74 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.735 | 0.877 | 0.296 | 1.1e-73 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.712 | 0.830 | 0.298 | 1.1e-71 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.728 | 0.868 | 0.284 | 1.1e-71 |
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 172/579 (29%), Positives = 310/579 (53%)
Query: 163 ASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDS 222
+ ++ V L T+ + GS+ VFD+ + V+ARKL EA + F L + G +S+D+
Sbjct: 143 SGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDA 202
Query: 223 CNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQM 282
CN + L + + + E G+ N + NIM++ LC+ GK+++ L Q+
Sbjct: 203 CNALIGSLVRI-GWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQV 261
Query: 283 ELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKV 342
+ +G PD+V+++T+I+ Y G ++ +L+ M KG P YTYN+V+ LCK K
Sbjct: 262 QEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKY 321
Query: 343 VEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAI 402
A+ + EM+ G+ PD+ Y +L+ CK G+V ++F +MR +++PDL+ ++++
Sbjct: 322 ERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSM 381
Query: 403 ICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRL 462
+ F +G + +A F+ + GL PD ++YT LI GYC+ G + A +L N M+
Sbjct: 382 MSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGC 441
Query: 463 TPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVK 522
+VVTY + GLCK L A++L +EM + L + YT +++G CK GN+ A++
Sbjct: 442 AMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAME 501
Query: 523 LMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFC 582
L + M+ D TY T++D + K G++ A E+ DM+ K + P+ +++++L+N C
Sbjct: 502 LFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALC 561
Query: 583 MSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGN 642
G + + ++ M+ K +KP N +IK +C + + M ++G PD
Sbjct: 562 SKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCI 621
Query: 643 TYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTS--SYNALIKGFLKRKKYLEARELFE 700
+YN L+ G + NM +A+ L K+M ++ L +YN+++ GF ++ + EA +
Sbjct: 622 SYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLR 681
Query: 701 EMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIE 739
+M G+ DR Y ++ + N + D ++
Sbjct: 682 KMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQ 720
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 176/562 (31%), Positives = 304/562 (54%)
Query: 199 RKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTAS 258
R ++ A +F+++L + +V + N+ + + + + F + G N +
Sbjct: 184 RNISFAENVFKEMLESQVSPNVFTYNILIRGFC-FAGNIDVALTLFDKMETKGCLPNVVT 242
Query: 259 YNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQ 318
YN +I C+ KI + LL M L+G P+++S++ +ING C G ++ V ++ EM
Sbjct: 243 YNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMN 302
Query: 319 IKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVA 378
+G + TYN++++ CK +A + EM+ G+ P + YT+LI CK GN+
Sbjct: 303 RRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMN 362
Query: 379 AAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALI 438
A D+MR + P+ TYT ++ GF G M EA ++ EM G P + Y ALI
Sbjct: 363 RAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALI 422
Query: 439 DGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQ 498
+G+C G M+ A ++ +M L+P+VV+Y+ + G C+S +++ A + EM KG++
Sbjct: 423 NGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIK 482
Query: 499 LNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHEL 558
+ TY+S++ G C+ +A L E+M G PD FTYT +++AYC G++ KA +L
Sbjct: 483 PDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQL 542
Query: 559 LRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLL-KWMLEKGLKPNAATYNPLIKQHC 617
+M++KG+ P VVT++VL+NG + ++LL K E+ + P+ TY+ LI ++C
Sbjct: 543 HNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESV-PSDVTYHTLI-ENC 600
Query: 618 LRNDMRTTAKIYKGMCAQGIT----------------PDGNTYNILLQGHCKARNMKEAW 661
+ ++ + KG C +G+ PDG YNI++ GHC+A ++++A+
Sbjct: 601 SNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAY 660
Query: 662 FLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDIN 721
L+KEMV+ GF L T + AL+K K K E + + R +++ E V+IN
Sbjct: 661 TLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEIN 720
Query: 722 FEEGNTEITLE-LCDAAIECYL 742
EGN ++ L+ L + A + +L
Sbjct: 721 HREGNMDVVLDVLAEMAKDGFL 742
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 167/515 (32%), Positives = 272/515 (52%)
Query: 181 WGSDPHV--FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRL--SNTCDG 236
WG P V F++ + L A +L A + E + +YGLV + + DG
Sbjct: 183 WGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDG 242
Query: 237 LRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELR-GCSPDVVSFS 295
+ + EF G W+ S N+++H C+ G++++A + +M + G PD +F+
Sbjct: 243 ALRIREQMVEF---GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFN 299
Query: 296 TIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQ 355
T++NG C G ++ +++++ M +G P+ YTYNSV+ LCK +V EA +L +M+ +
Sbjct: 300 TLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITR 359
Query: 356 GIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEA 415
P+ V Y TLI CK V A L + I+PD+ T+ ++I G CLT A
Sbjct: 360 DCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVA 419
Query: 416 EKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADG 475
+LF EM +G EPDE Y LID C G + +A ++ M +V+TY L DG
Sbjct: 420 MELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDG 479
Query: 476 LCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPD 535
CK+ + A E+ EM G+ N TYN++++GLCK+ + A +LM+ M + G PD
Sbjct: 480 FCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPD 539
Query: 536 TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLK 595
+TY +++ +C+ G++ KA ++++ M G +P +VT+ L++G C +G +E KLL+
Sbjct: 540 KYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLR 599
Query: 596 WMLEKGLKPNAATYNPLIKQHCLRNDMRTTA-KIYKGMCAQG-ITPDGNTYNILLQGHCK 653
+ KG+ YNP+I Q R T A +++ M Q PD +Y I+ +G C
Sbjct: 600 SIQMKGINLTPHAYNPVI-QGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCN 658
Query: 654 ARN-MKEAWFLHKEMVQKGFNLTTSSYNALIKGFL 687
++EA E+++KGF SS L +G L
Sbjct: 659 GGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLL 693
|
|
| TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 159/501 (31%), Positives = 282/501 (56%)
Query: 224 NLF-LSRLSNTCDGLRMVVKSFT---EFPELGICWNTASYNIMIHCLCRFGKIKEAHLLL 279
NL+ LS + N C R + +F+ + +LG +T +++ +I+ LC G++ EA L+
Sbjct: 106 NLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELV 165
Query: 280 LQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKT 339
+M G P +++ + ++NG C G++ + LI+ M G +PN TY V++++CK+
Sbjct: 166 DRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKS 225
Query: 340 SKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTY 399
+ A +LR+M + I D V Y+ +IDG CK G++ A+ LF+EM D++ Y
Sbjct: 226 GQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIY 285
Query: 400 TAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVH 459
T +I GFC G+ + KL +M+ R + PD + ++ALID + K G +++A LH M+
Sbjct: 286 TTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQ 345
Query: 460 MRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQ 519
++P+ VTYT+L DG CK +L+ AN +L M KG NI T+N ++NG CKA I
Sbjct: 346 RGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDD 405
Query: 520 AVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMN 579
++L M + G DT TY T++ +C+ G++ A EL ++M+ + ++P +V++ +L++
Sbjct: 406 GLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLD 465
Query: 580 GFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP 639
G C +G E ++ + + + ++ + YN +I C + + ++ + +G+ P
Sbjct: 466 GLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP 525
Query: 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELF 699
D TYNI++ G CK ++ EA L ++M + G + +YN LI+ L ++ +L
Sbjct: 526 DVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLI 585
Query: 700 EEMRRGGLVADREIYYFFVDI 720
EE++R G D VD+
Sbjct: 586 EEIKRCGFSVDASTVKMVVDM 606
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 158/538 (29%), Positives = 293/538 (54%)
Query: 185 PHVFDI--FFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVK 242
P V D F + + ++ + L +++ G+ ++ + ++ ++ C L +
Sbjct: 86 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCR-CRKLCLAFS 144
Query: 243 SFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYC 302
+ + +LG NT +++ +I+ LC G++ EA L+ +M G PD+++ +T++NG C
Sbjct: 145 AMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLC 204
Query: 303 YLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNV 362
G+ + LI++M G +PN TY V+ ++CK+ + A +LR+M + I D V
Sbjct: 205 LSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAV 264
Query: 363 IYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEM 422
Y+ +IDG CK G++ A+ LF+EM I +++TY +I GFC G+ + KL +M
Sbjct: 265 KYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDM 324
Query: 423 LGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGEL 482
+ R + P+ + ++ LID + K G +++A LH M+H + P+ +TYT+L DG CK L
Sbjct: 325 IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHL 384
Query: 483 ETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTI 542
+ AN+++ M KG NI T+N ++NG CKA I ++L M + G DT TY T+
Sbjct: 385 DKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTL 444
Query: 543 MDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL 602
+ +C+ G++ A EL ++M+ + + P++VT+ +L++G C +G E ++ + + + +
Sbjct: 445 IQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKM 504
Query: 603 KPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWF 662
+ + YN +I C + + ++ + +G+ P TYNI++ G CK + EA
Sbjct: 505 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAEL 564
Query: 663 LHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDI 720
L ++M + G +YN LI+ L ++ +L EE++R G D +D+
Sbjct: 565 LFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDM 622
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 161/548 (29%), Positives = 288/548 (52%)
Query: 200 KLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASY 259
KL++A LF +++ S+ + LS ++ + +V+ + LGI N +Y
Sbjct: 61 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKM-NKFDVVISLGEQMQNLGIPHNHYTY 119
Query: 260 NIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQI 319
+I+I+C CR ++ A +L +M G P++V+ S+++NGYC+ + + L+++M +
Sbjct: 120 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV 179
Query: 320 KGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAA 379
G +PN T+N+++ L +K EA ++ M+ +G PD V Y +++G CK G+
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 239
Query: 380 AYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALID 439
A+ L ++M + P +L Y II G C M +A LF EM +G+ P+ + Y++LI
Sbjct: 240 AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299
Query: 440 GYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQL 499
C G A L ++M+ ++ P+V T++AL D K G+L A +L EM ++ +
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 359
Query: 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELL 559
+I TY+S++NG C + +A ++ E M PD TY T++ +CK + + E+
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 419
Query: 560 RDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLR 619
R+M +GL + VT+N+L+ G +G + +++ K M+ G+ PN TYN L+ C
Sbjct: 420 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 479
Query: 620 NDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSY 679
+ +++ + + P TYNI+++G CKA +++ W L + KG +Y
Sbjct: 480 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAY 539
Query: 680 NALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIE 739
N +I GF ++ EA LF+EM+ G + + Y + +G+ E + EL
Sbjct: 540 NTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRS 599
Query: 740 CYLVGKAT 747
C G A+
Sbjct: 600 CGFAGDAS 607
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 169/549 (30%), Positives = 286/549 (52%)
Query: 200 KLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPE-LGICWNTAS 258
KL+EA LF +++ S+ + LS ++ +V+ SF E E LG+ N +
Sbjct: 45 KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKM-KKFDLVI-SFGEKMEILGVSHNLYT 102
Query: 259 YNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQ 318
YNIMI+CLCR ++ A +L +M G P +V+ ++++NG+C+ + + L+++M
Sbjct: 103 YNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 162
Query: 319 IKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVA 378
G +P+ T+ ++V L + +K EA ++ M+ +G PD V Y +I+G CK G
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 222
Query: 379 AAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALI 438
A L ++M I D++ Y+ +I C + +A LF EM +G+ PD Y++LI
Sbjct: 223 LALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLI 282
Query: 439 DGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQ 498
C G A L ++M+ ++ PNVVT+ +L D K G+L A +L EM ++ +
Sbjct: 283 SCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 342
Query: 499 LNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHEL 558
NI TYNS++NG C + +A ++ M PD TY T+++ +CK+ ++V EL
Sbjct: 343 PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMEL 402
Query: 559 LRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCL 618
RDM +GL + VT+ L++GF + ++ + + K M+ G+ PN TYN L+ C
Sbjct: 403 FRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 462
Query: 619 RNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSS 678
+ +++ + + PD TYNI+ +G CKA +++ W L + KG +
Sbjct: 463 NGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIA 522
Query: 679 YNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAI 738
YN +I GF K+ EA LF +M+ G + D Y + + +G+ + EL
Sbjct: 523 YNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMR 582
Query: 739 ECYLVGKAT 747
C G A+
Sbjct: 583 SCRFAGDAS 591
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
Identities = 164/554 (29%), Positives = 288/554 (51%)
Query: 194 VLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC 253
VL++ KL++A LF +++ + S+ N LS ++ + +V+ L I
Sbjct: 55 VLLDL-KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKM-NKFDLVISLGERMQNLRIS 112
Query: 254 WNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKL 313
++ SYNI+I+C CR ++ A +L +M G PD+V+ S+++NGYC+ + + L
Sbjct: 113 YDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVAL 172
Query: 314 IEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCK 373
+++M + +PN T+N+++ L +K EA ++ M+ +G PD Y T+++G CK
Sbjct: 173 VDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCK 232
Query: 374 MGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIV 433
G++ A L +M I D++ YT II C + +A LF EM +G+ P+ +
Sbjct: 233 RGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 292
Query: 434 YTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMC 493
Y +LI C G A L ++M+ ++ PNVVT++AL D K G+L A +L EM
Sbjct: 293 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352
Query: 494 RKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMV 553
++ + +I+TY+S++NG C + +A + E M P+ TY T++ +CK+ +
Sbjct: 353 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVE 412
Query: 554 KAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLI 613
+ EL R+M +GL + VT+N L+ G +G + +K+ K M+ G+ P+ TY+ L+
Sbjct: 413 EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 472
Query: 614 KQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673
C + +++ + + PD TYNI+++G CKA +++ W L + KG
Sbjct: 473 DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 532
Query: 674 LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLEL 733
Y +I GF ++ EA LF EM+ G + + Y + +G+ + EL
Sbjct: 533 PNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAEL 592
Query: 734 CDAAIECYLVGKAT 747
C VG A+
Sbjct: 593 IKEMRSCGFVGDAS 606
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 160/536 (29%), Positives = 271/536 (50%)
Query: 200 KLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASY 259
K ++A LF ++ + +V N S ++ T +V+ + GI + +
Sbjct: 68 KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQ-YELVLALCKQMESKGIAHSIYTL 126
Query: 260 NIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQI 319
+IMI+C CR K+ A + ++ G PD V F+T++NG C + L+L++ M
Sbjct: 127 SIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVE 186
Query: 320 KGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAA 379
G KP T N++V LC KV +A ++ M+ G P+ V Y +++ CK G A
Sbjct: 187 MGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTAL 246
Query: 380 AYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALID 439
A L +M NI D + Y+ II G C G + A LF+EM +G + D I Y LI
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIG 306
Query: 440 GYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQL 499
G+C AG L +M+ +++PNVVT++ L D K G+L A++LL EM ++G+
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAP 366
Query: 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELL 559
N TYNS+++G CK + +A+++++ M G PD T+ +++ YCK+ + EL
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELF 426
Query: 560 RDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLR 619
R+M +G+ + VT+N L+ GFC SG +E +KL + M+ + ++P+ +Y L+ C
Sbjct: 427 REMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDN 486
Query: 620 NDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSY 679
++ +I+ + + D Y I++ G C A + +AW L + KG L +Y
Sbjct: 487 GELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAY 546
Query: 680 NALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCD 735
N +I ++ +A LF +M G D Y + + + + EL +
Sbjct: 547 NIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIE 602
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 156/548 (28%), Positives = 286/548 (52%)
Query: 200 KLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASY 259
KL++A LF ++ S+ + LS ++ + +V+ + LGI N +Y
Sbjct: 61 KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKM-NKFDLVISLGEQMQNLGISHNLYTY 119
Query: 260 NIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQI 319
+I+I+C CR ++ A +L +M G PD+V+ ++++NG+C+ + + L+ +M
Sbjct: 120 SILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE 179
Query: 320 KGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAA 379
G +P+ +T+N+++ L + ++ EA ++ M+ +G PD V Y +++G CK G++
Sbjct: 180 MGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDL 239
Query: 380 AYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALID 439
A L +M I P ++ Y II C + +A LF EM +G+ P+ + Y +LI
Sbjct: 240 ALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 299
Query: 440 GYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQL 499
C G A L ++M+ ++ PNVVT++AL D K G+L A +L EM ++ +
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 359
Query: 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELL 559
+I+TY+S++NG C + +A + E M P+ TY T++ +CK+ + + EL
Sbjct: 360 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELF 419
Query: 560 RDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLR 619
R+M +GL + VT+ L++GF + ++ + + K M+ G+ P+ TY+ L+ C
Sbjct: 420 REMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNN 479
Query: 620 NDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSY 679
+ T +++ + + PD TYNI+++G CKA +++ W L + KG +Y
Sbjct: 480 GKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTY 539
Query: 680 NALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIE 739
++ GF ++ EA LF EM+ G + D Y + + +G+ + EL
Sbjct: 540 TTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599
Query: 740 CYLVGKAT 747
C VG A+
Sbjct: 600 CRFVGDAS 607
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WVK7 | PPR12_ARATH | No assigned EC number | 0.6138 | 0.9400 | 0.9527 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00028954001 | SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (748 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 751 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-36 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-35 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-33 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-27 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-21 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-19 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 3e-36
Identities = 104/463 (22%), Positives = 209/463 (45%), Gaps = 12/463 (2%)
Query: 164 SIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEAR-----KLFEKLLNYGLVI 218
S VE G + R L + R L E + GL+
Sbjct: 344 SGQAASDVEEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLL- 402
Query: 219 SVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLL 278
D ++ ++ C R V ++F F +L +++N+++ I A +
Sbjct: 403 --DMDKIYHAKFFKACKKQRAVKEAFR-FAKLIRNPTLSTFNMLMSVCASSQDIDGALRV 459
Query: 279 LLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK 338
L ++ G D ++T+I+ G++ + ++ EM G++ N +T+ +++ +
Sbjct: 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519
Query: 339 TSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLN--IIPDL 396
+V +A M ++ + PD V++ LI + G V A+ + EM+ I PD
Sbjct: 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579
Query: 397 LTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNN 456
+T A++ G++ A++++ + ++ VYT ++ + G A S++++
Sbjct: 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639
Query: 457 MVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGN 516
M + P+ V ++AL D +G+L+ A E+L + ++G++L +Y+S++ A N
Sbjct: 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699
Query: 517 ILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNV 576
+A++L ED++ P T ++ A C+ ++ KA E+L +M GL P+ +T+++
Sbjct: 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759
Query: 577 LMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLR 619
L+ + G LL E G+KPN + CLR
Sbjct: 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL-CLR 801
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 6e-35
Identities = 89/337 (26%), Positives = 161/337 (47%), Gaps = 11/337 (3%)
Query: 309 RVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLI 368
RVL+L++E GLK + Y +++ K+ KV + EM+N G+ + + LI
Sbjct: 458 RVLRLVQE---AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514
Query: 369 DGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRG-- 426
DG + G VA A+ + MR N+ PD + + A+I +G + A + EM
Sbjct: 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574
Query: 427 LEPDEIVYTALIDGYCKAGGMKKAFSLHNNM--VHMRLTPNVVTYTALADGLCKSGELET 484
++PD I AL+ AG + +A ++ + +++ TP V YT + + G+ +
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV--YTIAVNSCSQKGDWDF 632
Query: 485 ANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMD 544
A + +M +KG++ + ++++V+ AG++ +A ++++D G T +Y+++M
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
Query: 545 AYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKP 604
A + KA EL D+ L+P+V T N L+ C + ++L M GL P
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752
Query: 605 NAATYNPLIKQHCLRNDMRTTA-KIYKGMCAQGITPD 640
N TY+ L+ R D + GI P+
Sbjct: 753 NTITYSILLVA-SERKDDADVGLDLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-33
Identities = 101/391 (25%), Positives = 186/391 (47%), Gaps = 17/391 (4%)
Query: 266 LCRFGKIKEAHLLLLQMELRG-CSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKP 324
L R G+IK+ LL ME RG D + + C + QR +K E + L
Sbjct: 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKA-C---KKQRAVK--EAFRFAKLIR 433
Query: 325 NP--YTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYR 382
NP T+N ++ + + + A +LR + G+ D +YTTLI K G V A +
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 383 LFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYC 442
+F EM + ++ T+ A+I G G++ +A + M + ++PD +V+ ALI
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 443 KAGGMKKAFSLHNNMVHMR-----LTPNVVTYTALADGLCKSGELETANELLHEMCRKGL 497
++G + +AF + + M+ + P+ +T AL +G+++ A E+ + +
Sbjct: 554 QSGAVDRAFDV---LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 498 QLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHE 557
+ Y VN + G+ A+ + +DM+ G PD ++ ++D +G++ KA E
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 558 LLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHC 617
+L+D +G++ V+++ LM + + +L + + L+P +T N LI C
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730
Query: 618 LRNDMRTTAKIYKGMCAQGITPDGNTYNILL 648
N + ++ M G+ P+ TY+ILL
Sbjct: 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-27
Identities = 85/408 (20%), Positives = 187/408 (45%), Gaps = 11/408 (2%)
Query: 305 GELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIY 364
G ++ + L+E+M+ +GL Y++ CK + V+ +++ P +
Sbjct: 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR---NPTLSTF 440
Query: 365 TTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLG 424
L+ ++ A R+ ++ + D YT +I +GK+ ++FHEM+
Sbjct: 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500
Query: 425 RGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELET 484
G+E + + ALIDG +AG + KAF + M + P+ V + AL +SG ++
Sbjct: 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560
Query: 485 ANELLHEMC--RKGLQLNIYTYNSIVNGLCKAGNI---LQAVKLMEDMEVAGFHPDTFTY 539
A ++L EM + + T +++ AG + + +++ + + G P+ Y
Sbjct: 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT-PEV--Y 617
Query: 540 TTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLE 599
T +++ + G+ A + DM KG++P V F+ L++ +G ++ ++L+ +
Sbjct: 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677
Query: 600 KGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKE 659
+G+K +Y+ L+ + + ++Y+ + + + P +T N L+ C+ + +
Sbjct: 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737
Query: 660 AWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL 707
A + EM + G T +Y+ L+ ++ +L + + G+
Sbjct: 738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-25
Identities = 129/557 (23%), Positives = 221/557 (39%), Gaps = 80/557 (14%)
Query: 200 KLNEARKLFEKLLNYGLVISVDS-CNLFLSRLSNTCD-------GLRMVVKSFTEFPELG 251
+L +A KL E + L + VD + L RL C+ G R+ ++ + P LG
Sbjct: 66 QLEQALKLLESMQE--LRVPVDEDAYVALFRL---CEWKRAVEEGSRVCSRALSSHPSLG 120
Query: 252 ICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVL 311
+ N M+ RFG++ A + +M R D+ S++ ++ GY G L
Sbjct: 121 VRLG----NAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEAL 172
Query: 312 KLIEEMQIKGLKPNPYTYNSVVR-----------------------------------LL 336
L M G++P+ YT+ V+R +
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232
Query: 337 CKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDL 396
K VV A + M D + + +I G+ + G LF MR L++ PDL
Sbjct: 233 VKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288
Query: 397 LTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNN 456
+T T++I L G ++ ++ G D V +LI Y G +A + +
Sbjct: 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348
Query: 457 MVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGN 516
M T + V++TA+ G K+G + A E M + + + T S+++ G+
Sbjct: 349 ME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404
Query: 517 ILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNV 576
+ VKL E E G +++ Y K + KA E+ ++ +K V+++
Sbjct: 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTS 460
Query: 577 LMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG 636
++ G ++ + + ML LKPN+ T + + +I+ + G
Sbjct: 461 IIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519
Query: 637 ITPDGNTYNILLQGHCKARNMKEAWF---LHKEMVQKGFNLTTSSYNALIKGFLKRKKYL 693
I DG N LL + + M AW H++ V S+N L+ G++ K
Sbjct: 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDV--------VSWNILLTGYVAHGKGS 571
Query: 694 EARELFEEMRRGGLVAD 710
A ELF M G+ D
Sbjct: 572 MAVELFNRMVESGVNPD 588
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 2e-21
Identities = 76/348 (21%), Positives = 150/348 (43%), Gaps = 13/348 (3%)
Query: 263 IHCLCRFGKIKEAHLLLLQMELRGC-SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKG 321
I L G+ +EA L +E + ++ ++ L ++ V + ++ G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 322 LKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAY 381
+P+ Y N V+ + K +++A + EM + + + T+I G GN A+
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLAS----WGTIIGGLVDAGNYREAF 209
Query: 382 RLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGY 441
LF EM + T+ ++ G ++L +L G+ D V ALID Y
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269
Query: 442 CKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNI 501
K G ++ A + + M V + ++ G G E A L +EM G+ ++
Sbjct: 270 SKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 502 YTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRD 561
+T++ ++ + + A + + GF D T ++D Y K G M A R+
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA----RN 381
Query: 562 MLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATY 609
+ D+ + +++++N L+ G+ G ++ + M+ +G+ PN T+
Sbjct: 382 VFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 5e-20
Identities = 100/466 (21%), Positives = 200/466 (42%), Gaps = 37/466 (7%)
Query: 261 IMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIK 320
+++H C G + +A L +M R ++ S+ TII G G + L EM
Sbjct: 165 LLMHVKC--GMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWED 218
Query: 321 GLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAA 380
G P T+ ++R + + ++ G+V D + LID + K G++ A
Sbjct: 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278
Query: 381 YRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDG 440
+FD M + + +++ G+ L G EA L++EM G+ D+ ++ +I
Sbjct: 279 RCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334
Query: 441 YCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLN 500
+ + ++ A H ++ ++V TAL D K G +E A + M RK N
Sbjct: 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----N 390
Query: 501 IYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLR 560
+ ++N+++ G G +AV++ E M G P+ T+ ++ A SG + E+ +
Sbjct: 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450
Query: 561 DML-DKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLR 619
M + ++P + + ++ G++++ +++ KP + L+ +
Sbjct: 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR---RAPFKPTVNMWAALLTACRIH 507
Query: 620 NDM---RTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTT 676
++ R A+ GM + + N Y +LL + + EA + + + +KG ++
Sbjct: 508 KNLELGRLAAEKLYGMGPEKL----NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563
Query: 677 SSYNALIK----GFL--------KRKKYLEARELFEEMRRGGLVAD 710
+ +K F R+ Y + EL +E+ G VA+
Sbjct: 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAE 609
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 2e-19
Identities = 107/520 (20%), Positives = 196/520 (37%), Gaps = 111/520 (21%)
Query: 180 DWGSDPHVFDIFFQVLVEARKLNEARKLFEKL-----LNYGLVIS----VDSCN----LF 226
+ D V + + V+ + AR +F+++ +++ +IS C LF
Sbjct: 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276
Query: 227 LSRLSNTCDGLRMVVKSFTEFPEL-----------------GICWNTASYNIMIHCLCRF 269
+ + D M + S EL G + + N +I
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 270 GKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTY 329
G EA + +ME + D VS++ +I+GY G + L+ M+ + P+ T
Sbjct: 337 GSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 330 NSVVRLLCKTSKVVEAETILREM-MNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMR 388
SV+ C ++ L E+ +G++ V+ LI+ + K + A +F +
Sbjct: 393 ASVLSA-CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451
Query: 389 GLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGR----------------------- 425
++I ++T+II G L + EA F +ML
Sbjct: 452 EKDVI----SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMC 507
Query: 426 -----------GLEPDEIVYTALIDGYCKAGGMKKAF----------------------- 451
G+ D + AL+D Y + G M A+
Sbjct: 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAH 567
Query: 452 -------SLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRK-GLQLNIYT 503
L N MV + P+ VT+ +L +SG + E H M K + N+
Sbjct: 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627
Query: 504 YNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDML 563
Y +V+ L +AG + +A + M + PD + +++A C+ V+ EL +
Sbjct: 628 YACVVDLLGRAGKLTEAYNFINKMPIT---PDPAVWGALLNA-CRIHRHVELGELAAQHI 683
Query: 564 DKGLQPSVVTFNVLM-NGFCMSGMIEDGEKLLKWMLEKGL 602
+ L P+ V + +L+ N + +G ++ ++ K M E GL
Sbjct: 684 FE-LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 1e-18
Identities = 115/543 (21%), Positives = 210/543 (38%), Gaps = 106/543 (19%)
Query: 244 FTEFPELGICW---------NTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSF 294
F F EL W + S+N+++ + G EA L +M G PDV +F
Sbjct: 131 FVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190
Query: 295 STIINGYCYLGELQR-------VLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAET 347
++ + +L R V++ E+ + + N+++ + K VV A
Sbjct: 191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV-------NALITMYVKCGDVVSARL 243
Query: 348 ILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAII--CG 405
+ M D + + +I G+ + G LF MR L++ PDL+T T++I C
Sbjct: 244 VFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299
Query: 406 -------------------------FC--LT------GKMVEAEKLFHEMLGRGLEPDEI 432
C L G EAEK+F M + D +
Sbjct: 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAV 355
Query: 433 VYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEM 492
+TA+I GY K G KA + M ++P+ +T ++ G+L+ +L HE+
Sbjct: 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL-HEL 414
Query: 493 C-RKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGE 551
RKGL + N+++ K I +A+++ ++ D ++T+I+ +
Sbjct: 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNR 470
Query: 552 MVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLK-----PNA 606
+A R ML L+P+ VT ++ G + G+++ +L G+ PNA
Sbjct: 471 CFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529
Query: 607 -------------------------ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDG 641
++N L+ + +++ M G+ PD
Sbjct: 530 LLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589
Query: 642 NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTS-SYNALIKGFLKRKKYL-EARELF 699
T+ LL ++ + + M +K +++T + + A + L R L EA
Sbjct: 590 VTFISLLCACSRSGMVTQGLEYFHSMEEK-YSITPNLKHYACVVDLLGRAGKLTEAYNFI 648
Query: 700 EEM 702
+M
Sbjct: 649 NKM 651
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 1e-17
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 534 PDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFC 582
PD TY T++D YCK G++ +A +L +M +G++P+V T+++L++G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.4 bits (179), Expect = 4e-16
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 464 PNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCK 513
P+VVTY L DG CK G++E A +L +EM ++G++ N+YTY+ +++GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 1e-15
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 394 PDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCK 443
PD++TY +I G+C GK+ EA KLF+EM RG++P+ Y+ LIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.1 bits (173), Expect = 2e-15
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 359 PDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFC 407
PD V Y TLIDG+CK G V A +LF+EM+ I P++ TY+ +I G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.1 bits (173), Expect = 2e-15
Identities = 26/50 (52%), Positives = 32/50 (64%)
Query: 429 PDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCK 478
PD + Y LIDGYCK G +++A L N M + PNV TY+ L DGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.1 bits (173), Expect = 2e-15
Identities = 18/49 (36%), Positives = 34/49 (69%)
Query: 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCK 548
++ TYN++++G CK G + +A+KL +M+ G P+ +TY+ ++D CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-14
Identities = 91/421 (21%), Positives = 178/421 (42%), Gaps = 24/421 (5%)
Query: 295 STIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEA-----ETIL 349
++ + C G+L++ LKL+E MQ + + Y ++ R LC+ + VE L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRAL 113
Query: 350 REMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLT 409
+ G+ N ++ F + G + A+ +F +M DL ++ ++ G+
Sbjct: 114 SSHPSLGVRLGN----AMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKA 165
Query: 410 GKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTY 469
G EA L+H ML G+ PD + ++ + + +H ++V +V
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225
Query: 470 TALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEV 529
AL K G++ +A + M R+ + ++N++++G + G L+ ++L M
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRE 281
Query: 530 AGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIED 589
PD T T+++ A G+ E+ ++ G V N L+ + G +
Sbjct: 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341
Query: 590 GEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTA-KIYKGMCAQGITPDGNTYNILL 648
EK+ M K +A ++ +I +N + A + Y M ++PD T +L
Sbjct: 342 AEKVFSRMETK----DAVSWTAMISG-YEKNGLPDKALETYALMEQDNVSPDEITIASVL 396
Query: 649 QGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLV 708
++ LH+ +KG NALI+ + K K +A E+F + ++
Sbjct: 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456
Query: 709 A 709
+
Sbjct: 457 S 457
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 4e-14
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 569 PSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHC 617
P VVT+N L++G+C G +E+ KL M ++G+KPN TY+ LI C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 5e-14
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYC 302
+ +YN +I C+ GK++EA L +M+ RG P+V ++S +I+G C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 1e-13
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 289 PDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK 338
PDVV+++T+I+GYC G+++ LKL EM+ +G+KPN YTY+ ++ LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 7e-12
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 324 PNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCK 373
P+ TYN+++ CK KV EA + EM +GI P+ Y+ LIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 58.9 bits (144), Expect = 1e-11
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 355 QGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMR 388
+G+ PD V Y TLIDG C+ G V A L DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-11
Identities = 74/346 (21%), Positives = 134/346 (38%), Gaps = 57/346 (16%)
Query: 405 GFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTP 464
C G++ +A KL M + DE Y AL C+ K+A + V R
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCE---WKRAVE-EGSRVCSRALS 114
Query: 465 NVVTY-----TALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQ 519
+ + A+ + GEL A + +M + +++++N +V G KAG +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDE 170
Query: 520 AVKLMEDMEVAGFHPDTFTY-----------------------------------TTIMD 544
A+ L M AG PD +T+ ++
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230
Query: 545 AYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKP 604
Y K G++V A R + D+ + +++N +++G+ +G +G +L M E + P
Sbjct: 231 MYVKCGDVVSA----RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286
Query: 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLH 664
+ T +I L D R +++ + G D + N L+Q + + EA +
Sbjct: 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346
Query: 665 KEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710
M K S+ A+I G+ K +A E + M + + D
Sbjct: 347 SRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-10
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 643 TYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK 688
TYN L+ G+CK ++EA L EM ++G +Y+ LI G K
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (129), Expect = 2e-09
Identities = 16/34 (47%), Positives = 30/34 (88%)
Query: 495 KGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDME 528
KGL+ ++ TYN++++GLC+AG + +AV+L+++ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 5e-08
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 531 GFHPDTFTYTTIMDAYCKSGEMVKAHELLRDM 562
G PD TY T++D C++G + +A ELL +M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 6e-08
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 462 LTPNVVTYTALADGLCKSGELETANELLHEM 492
L P+VVTY L DGLC++G ++ A ELL EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 42/211 (19%), Positives = 93/211 (44%), Gaps = 12/211 (5%)
Query: 503 TYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDM 562
TY+++V +I + +E +GF PD + ++ + K G ++ A L +M
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 563 LDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDM 622
++ ++ ++ ++ G +G + L + M E G T+ +++
Sbjct: 185 PER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 623 RTTAKIYKGMCAQGITPDGNTY--NILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYN 680
R +++ C G+T+ L+ + K ++++A + M +K TT ++N
Sbjct: 241 RAGQQLH--CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWN 294
Query: 681 ALIKGFLKRKKYLEARELFEEMRRGGLVADR 711
+++ G+ EA L+ EMR G+ D+
Sbjct: 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.5 bits (117), Expect = 8e-08
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 425 RGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMV 458
+GL+PD + Y LIDG C+AG + +A L + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (114), Expect = 2e-07
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 565 KGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWM 597
KGL+P VVT+N L++G C +G +++ +LL M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 285 RGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQ 318
+G PDVV+++T+I+G C G + ++L++EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 5e-07
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 537 FTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSV 571
TY T++D CK+G + +A EL ++M ++G++P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 9e-07
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 398 TYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDE 431
TY +I G C G++ EA +LF EM RG+EPD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 258 SYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDV 291
+YN +I LC+ G+++EA L +M+ RG PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 19/34 (55%), Positives = 20/34 (58%)
Query: 362 VIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPD 395
V Y TLIDG CK G V A LF EM+ I PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 502 YTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDT 536
TYN++++GLCKAG + +A++L ++M+ G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 5e-06
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 537 FTYTTIMDAYCKSGEMVKAHELLRDMLDKGL 567
TY +++ YCK+G++ +A EL ++M +KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 6e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 391 NIIPDLLTYTAIICGFCLTGKMVEAEKLFHEM 422
+ PD++TY +I G C G++ EA +L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 9e-06
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 327 YTYNSVVRLLCKTSKVVEAETILREMMNQGIVPD 360
TYN+++ LCK +V EA + +EM +GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 678 SYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710
+YN LI G+ K+ K EA +LF EM++ G+ +
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPN 37
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 635 QGITPDGNTYNILLQGHCKARNMKEAWFLHKEMV 668
+G+ PD TYN L+ G C+A + EA L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 398 TYTAIICGFCLTGKMVEAEKLFHEMLGRGL 427
TY ++I G+C GK+ EA +LF EM +G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 362 VIYTTLIDGFCKMGNVAAAYRLFDEMRGLNI 392
V Y +LI G+CK G + A LF EM+ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 536 TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQP 569
TY ++ A K+G+ A +L +M GL+P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 678 SYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710
+YN LI G K + EA ELF+EM+ G+ D
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 677 SSYNALIKGFLKRKKYLEARELFEEMRRGGL 707
+YN+LI G+ K K EA ELF+EM+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 643 TYNILLQGHCKARNMKEAWFLHKEMVQKGF 672
TYN L+ G+CKA ++EA L KEM +KG
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 572 VTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA 606
VT+N L++G C +G +E+ +L K M E+G++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 467 VTYTALADGLCKSGELETANELLHEMCRKGL 497
VTY +L G CK+G+LE A EL EM KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 19/184 (10%)
Query: 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLI 314
+ S+NI++ GK A L +M G +PD V+F +++ G + + L+
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 315 EEMQIK-GLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCK 373
M+ K + PN Y VV LL + K+ EA + +M I PD ++ L++ C+
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA-CR 668
Query: 374 ------MGNVAAAYRLFDEMRGLNIIPDLLTYTAIICG-FCLTGKMVEAEKLFHEMLGRG 426
+G +AA + E+ P+ + Y ++C + GK E ++ M G
Sbjct: 669 IHRHVELGELAAQHIF--ELD-----PNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
Query: 427 LEPD 430
L D
Sbjct: 722 LTVD 725
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 467 VTYTALADGLCKSGELETANELLHEMCRKGLQLNI 501
VTY L DGLCK+G +E A EL EM +G++ ++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 606 AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHK 665
A+TY+ L++ +R +Y + + G PD N +L H K + +A L
Sbjct: 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182
Query: 666 EMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEM 702
EM ++ +S+ +I G + Y EA LF EM
Sbjct: 183 EMPER----NLASWGTIIGGLVDAGNYREAFALFREM 215
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 643 TYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTT 676
TYN L+ G CKA ++EA L KEM ++G
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 13/182 (7%)
Query: 287 CSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSK---VV 343
DVVS++ ++ GY G+ ++L M G+ P+ T+ + LLC S+ V
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF---ISLLCACSRSGMVT 606
Query: 344 EAETILREM-MNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAI 402
+ M I P+ Y ++D + G + AY ++M I PD + A+
Sbjct: 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGAL 663
Query: 403 ICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALI-DGYCKAGGMKKAFSLHNNMVHMR 461
+ C + VE +L + + L+P+ + Y L+ + Y AG + + M
Sbjct: 664 LNA-CRIHRHVELGELAAQHIFE-LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
Query: 462 LT 463
LT
Sbjct: 722 LT 723
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 251 GICWNTASYNIMIHCLCRFGKIKEAHLLLLQME 283
G+ + +YN +I LCR G++ EA LL +ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 258 SYNIMIHCLCRFGKIKEAHLLLLQMELRGC 287
+YN +I C+ GK++EA L +M+ +G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 502 YTYNSIVNGLCKAGNILQAVKLMEDMEVAGF 532
TYNS+++G CKAG + +A++L ++M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 571 VVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKP 604
+ T+N L+ +G + +L+ M GLKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 12/34 (35%), Positives = 26/34 (76%)
Query: 292 VSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN 325
V+++T+I+G C G ++ L+L +EM+ +G++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 432 IVYTALIDGYCKAGGMKKAFSLHNNMVHMRL 462
+ Y +LI GYCKAG +++A L M +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 13/31 (41%), Positives = 25/31 (80%)
Query: 292 VSFSTIINGYCYLGELQRVLKLIEEMQIKGL 322
V+++++I+GYC G+L+ L+L +EM+ KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 7e-04
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 501 IYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHP 534
+ TYN+++ L KAG+ A+ ++E+M+ +G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 0.001
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 670 KGFNLTTSSYNALIKGFLKRKKYLEARELFEEMR 703
KG +YN LI G + + EA EL +EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 572 VTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL 602
VT+N L++G+C +G +E+ +L K M EKG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 326 PYTYNSVVRLLCKTSKVVEAETILREMMNQGIVP 359
TYN+++ L K A +L EM G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 678 SYNALIKGFLKRKKYLEARELFEEMRRGGLVA 709
+YNAL+ K A + EEM+ GL
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 432 IVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNV 466
+ Y LIDG CKAG +++A L M + P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 643 TYNILLQGHCKARNMKEAWFLHKEMVQKG 671
TYN LL KA + A + +EM G
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASG 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 466 VVTYTALADGLCKSGELETANELLHEMCRKGLQ 498
+ TY AL L K+G+ + A +L EM GL+
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 256 TASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSP 289
+YN ++ L + G A +L +M+ G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 398 TYTAIICGFCLTGKMVEAEKLFHEMLGRGLEP 429
TY A++ G A + EM GL+P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.004
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 362 VIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIP 394
Y L+ K G+ A + +EM+ + P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 751 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.98 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.72 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.72 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.59 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.57 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.54 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.54 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.52 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.52 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.48 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.48 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.42 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.39 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.37 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.36 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.35 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.34 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.32 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.31 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.3 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.25 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.21 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.2 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.19 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.17 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.15 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.14 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.13 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.12 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.12 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.1 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.09 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.08 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.08 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.0 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.9 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.89 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.86 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.85 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.83 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.81 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.78 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.76 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.73 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.7 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.69 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.63 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.62 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.61 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.6 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.59 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.56 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.55 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.54 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.53 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.53 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.51 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.46 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.44 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.42 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.42 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.37 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.33 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.22 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.13 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.07 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.04 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.03 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.03 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.96 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.95 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.93 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.93 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.91 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.88 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.85 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.83 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.8 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.77 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.77 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.7 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.66 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.65 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.63 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.63 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.63 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.62 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.61 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.61 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.59 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.58 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.58 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.57 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.55 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.54 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.53 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.51 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.5 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.5 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.49 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.49 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.49 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.49 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.49 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.48 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.48 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.48 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.47 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.44 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.42 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.41 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.38 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.37 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.34 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.3 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.29 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.28 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.26 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.25 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.21 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.14 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.11 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.09 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.05 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.04 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.03 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.03 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.02 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.98 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.95 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.94 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.87 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.86 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.86 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.75 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.75 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.74 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.73 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.71 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.71 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.63 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.63 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.6 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.59 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.52 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.49 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.45 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.45 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.44 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.36 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.32 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.32 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.3 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.28 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.25 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.2 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.18 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.05 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.0 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.99 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.95 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.92 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.86 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.83 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.83 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.82 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.78 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.71 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.71 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.62 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.56 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.55 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.48 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.46 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.44 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.4 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.39 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.3 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.15 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.1 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.78 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.78 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.57 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.5 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.47 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.45 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.44 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.39 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.39 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.38 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 94.37 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.2 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.08 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.77 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.66 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.56 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.54 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.2 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.08 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.05 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.99 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.98 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.9 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.67 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.65 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.54 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.48 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.38 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.27 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.24 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.01 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.99 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.96 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.8 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.49 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.39 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.27 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.27 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.23 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.2 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.17 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.16 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.0 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.78 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.65 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 90.61 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.14 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.81 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.55 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.37 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.03 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 88.95 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.85 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 88.48 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.47 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.37 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.27 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.2 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.19 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 87.81 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.8 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.36 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.28 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.27 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 85.99 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.88 | |
| PRK09687 | 280 | putative lyase; Provisional | 85.63 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.56 | |
| KOG2908 | 380 | consensus 26S proteasome regulatory complex, subun | 85.3 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.21 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.8 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.68 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 84.44 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.42 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.4 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.14 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 84.13 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.09 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 84.08 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.83 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.76 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.43 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 83.36 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.03 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.01 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.96 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 82.88 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.34 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.23 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 82.21 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 82.0 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 80.67 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 80.5 | |
| PRK09687 | 280 | putative lyase; Provisional | 80.22 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-74 Score=666.79 Aligned_cols=615 Identities=17% Similarity=0.245 Sum_probs=465.7
Q ss_pred cCChHHHHHHHHhhhhC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcC-----
Q 004470 108 RSDYRLVLDFFDWACLR-REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDW----- 181 (751)
Q Consensus 108 ~~~~~~al~~f~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 181 (751)
.++++.|+.+|+..... .+++..++..++..+...+.++.|..++..+++.+.. . ...+...++..|..+
T Consensus 64 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~n~li~~~~~~g~~~~ 139 (857)
T PLN03077 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS-L---GVRLGNAMLSMFVRFGELVH 139 (857)
T ss_pred CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC-C---CchHHHHHHHHHHhCCChHH
Confidence 46788888888887664 3556667777777778888888888888887765421 1 111222222222211
Q ss_pred ---------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCC
Q 004470 182 ---------GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGI 252 (751)
Q Consensus 182 ---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~ 252 (751)
.++..+|+.|+.+|++.|++++|+++|++|...|+.||..+|+.++..+. ..++++.+.+++..+...|+
T Consensus 140 A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~-~~~~~~~~~~~~~~~~~~g~ 218 (857)
T PLN03077 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG-GIPDLARGREVHAHVVRFGF 218 (857)
T ss_pred HHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC-CccchhhHHHHHHHHHHcCC
Confidence 35677999999999999999999999999999999999999999999886 67888889999999998898
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 004470 253 CWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSV 332 (751)
Q Consensus 253 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 332 (751)
.||+.+||.||.+|++.|++++|.++|++|.. ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l 294 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 89999999999999999999999999988875 68888999999999999999999999999888889999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 333 VRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKM 412 (751)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 412 (751)
+.+|++.|+.+.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~ 370 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLP 370 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCH
Confidence 999999999999999999999888889999999999999999999999998888864 6788888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 413 VEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEM 492 (751)
Q Consensus 413 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 492 (751)
++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+++|++.|++++|.++|++|
T Consensus 371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---
Q 004470 493 CRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQP--- 569 (751)
Q Consensus 493 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--- 569 (751)
.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.+
T Consensus 451 ~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 451 PE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred CC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 54 4666777777777777777777777777764 467777777666666666555555555555555555544
Q ss_pred ---------------------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCH
Q 004470 570 ---------------------------SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDM 622 (751)
Q Consensus 570 ---------------------------~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 622 (751)
|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 55555555555555555666666666665555566666666666666666666
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 623 RTTAKIYKGMC-AQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEE 701 (751)
Q Consensus 623 ~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 701 (751)
++|.++|++|. +.|+.|+..+|+.++++|++.|++++|.+++++| .++||..+|++|+.+|...|+.+.|....++
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 66666666655 4555556566666666666666666666555555 2455555666666665555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004470 702 MRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLVG 744 (751)
Q Consensus 702 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 744 (751)
+.+.. +.+...|..+.+.|...|+|++|.++.+.|.++|+.+
T Consensus 683 l~~l~-p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 683 IFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHhhC-CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 55532 3345566666777888888888888888888888753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=625.66 Aligned_cols=542 Identities=19% Similarity=0.274 Sum_probs=313.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCc-cCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNYGLV-ISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
.|..+...|++.|++++|+++|++|.+.|+. ++...++.++..+. ..|..++|..+|+.|.. ||..+|+.|+.+
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~-~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a 446 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACK-KQRAVKEAFRFAKLIRN----PTLSTFNMLMSV 446 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH-HCCCHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 3444445555555555555555555555432 23333333444333 34555555555555543 455555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 004470 266 LCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEA 345 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 345 (751)
|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 346 ETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRG--LNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEML 423 (751)
Q Consensus 346 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 423 (751)
.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555543 3445555555555555555555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004470 424 GRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYT 503 (751)
Q Consensus 424 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~ 503 (751)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004470 504 YNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM 583 (751)
Q Consensus 504 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 583 (751)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 584 SGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFL 663 (751)
Q Consensus 584 ~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 663 (751)
.|++++|.+++.+|.+.|+.||..+|++++..|. +++++|.++.+.+...+ + .......+..++|..+
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTSWALMV 834 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHHHHHHH
Confidence 5555555555555555555555555555543321 12333333322222110 0 0000111234679999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 664 HKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 664 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
|++|++.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|+.+++++.+. .++|..++++|.+.|+.
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCC
Confidence 9999999999999999999988889999999999999988888889999999999987432 36899999999999998
Q ss_pred CCCc
Q 004470 744 GKAT 747 (751)
Q Consensus 744 ~~~~ 747 (751)
|...
T Consensus 913 p~~~ 916 (1060)
T PLN03218 913 PSVS 916 (1060)
T ss_pred CCcc
Confidence 8764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-71 Score=648.34 Aligned_cols=589 Identities=17% Similarity=0.202 Sum_probs=519.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHH------------HHHh--hhcCCCChhhHHHH
Q 004470 126 EPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVER------------LIYT--YKDWGSDPHVFDIF 191 (751)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~------------l~~~--~~~~~~~~~~~~~l 191 (751)
+++..++..++..+.+.|++++|..++.++...+..+....+..++.. +... -.....+..+++.|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 456677888899999999999999999999875422111111111111 0000 01223456678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCC
Q 004470 192 FQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGK 271 (751)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 271 (751)
+..|++.|++++|.++|++|. .||..+||.++..+. +.|++++|+++|++|...|+.||.+||+.++.++++.++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~-~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYA-KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 999999999999999999886 478889999999887 578999999999999988999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 272 IKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILRE 351 (751)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 351 (751)
++.+.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+||.+|.+|++.|+.++|.++|++
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999886 36888999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004470 352 MMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDE 431 (751)
Q Consensus 352 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 431 (751)
|...|+.||..+|+.++.++++.|+++.|.+++..|.+.|..||..+|+.+|.+|++.|++++|.++|++|. .||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999885 4688
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004470 432 IVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGL 511 (751)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~ 511 (751)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+++|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 004470 512 CKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGE 591 (751)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 591 (751)
++.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|.++|++|.. +++||..||+.++.+|++.|..+.+.
T Consensus 435 ~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 435 SKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 99999999999999886 46788999999999999999999999999986 58899999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 592 KLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKG 671 (751)
Q Consensus 592 ~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 671 (751)
+++..+.+.|+.+|..++++|+.+|++.|++++|.++|+++ .||..+|+.+|.+|++.|+.++|+++|++|.+.|
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999887 5799999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 672 FNLTTSSYNALIKGFLKRKKYLEARELFEEMR-RGGLVADREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 672 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|..++++|.+.|++++|.+++++|
T Consensus 585 ~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 99999999999999999999999999999999 6899999999999999999999999999999987
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=625.60 Aligned_cols=547 Identities=18% Similarity=0.273 Sum_probs=488.9
Q ss_pred CChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHh
Q 004470 143 KDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDS 222 (751)
Q Consensus 143 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 222 (751)
++......++..+++.+... .-..+++.+.. -.-.+.+...+..++..|.+.|.+++|..+|+.|.. |+..+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~---eAl~Lfd~M~~-~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~T 439 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIK---DCIDLLEDMEK-RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLST 439 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHH---HHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHH
Confidence 34456666666666554211 11223332211 011234556778899999999999999999999874 99999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004470 223 CNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYC 302 (751)
Q Consensus 223 ~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 302 (751)
|+.++..+. ..|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||.++|+.+|.+|+
T Consensus 440 yn~LL~a~~-k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 440 FNMLMSVCA-SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHH-hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999998 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004470 303 YLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMN--QGIVPDNVIYTTLIDGFCKMGNVAAA 380 (751)
Q Consensus 303 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A 380 (751)
+.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999986 67899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 004470 381 YRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHM 460 (751)
Q Consensus 381 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 460 (751)
.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 461 RLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYT 540 (751)
Q Consensus 461 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 540 (751)
|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC
Q 004470 541 TIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRN 620 (751)
Q Consensus 541 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g 620 (751)
.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|. +++++|..+.+.+..-.. .......+
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~ 826 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQIENK 826 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccccccc
Confidence 999999999999999999999999999999999999986543 246666665544432110 01111223
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 621 DMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFE 700 (751)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 700 (751)
..++|..+|++|++.|+.||..||+.++.++++.+..+.+..++++|...+..|+..+|+++++++++. .++|..+++
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~ 904 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLE 904 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHH
Confidence 456799999999999999999999999999889999999999999998888888999999999998532 468999999
Q ss_pred HHHHCCCCCCHH
Q 004470 701 EMRRGGLVADRE 712 (751)
Q Consensus 701 ~~~~~~~~~~~~ 712 (751)
+|.+.|+.|+..
T Consensus 905 em~~~Gi~p~~~ 916 (1060)
T PLN03218 905 EAASLGVVPSVS 916 (1060)
T ss_pred HHHHcCCCCCcc
Confidence 999999999874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=565.95 Aligned_cols=511 Identities=20% Similarity=0.345 Sum_probs=472.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYG-LVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIM 262 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 262 (751)
+...|+.++..|.+.|++++|+++|+.|...+ +.||..+|+.++..+. ..++++.|.+++..+...|+.||+.+||.|
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~-~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACI-ALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 34578899999999999999999999998764 7899999999999998 679999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCH
Q 004470 263 IHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKV 342 (751)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 342 (751)
+.+|++.|++++|.++|++|.+ ||.++||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.++++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999975 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 343 VEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEM 422 (751)
Q Consensus 343 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 422 (751)
+.+.+++..+.+.|+.||..+|++||++|++.|++++|.++|++|.. +|.++||.+|.+|++.|+.++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999975 58999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004470 423 LGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIY 502 (751)
Q Consensus 423 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~ 502 (751)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999964 6899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 004470 503 TYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLD-KGLQPSVVTFNVLMNGF 581 (751)
Q Consensus 503 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~ 581 (751)
+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999985 69999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEA 660 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A 660 (751)
++.|++++|.+++++| +..|+..+|++++.+|+..|+++.|..+++++.+ +.| +..+|..|++.|++.|++++|
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHH
Confidence 9999999999998765 6789999999999999999999999999999976 445 477899999999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHH---HHHH--------hcCCHHHHHHHHHHHHHCCCCCCHH
Q 004470 661 WFLHKEMVQKGFNLTT-SSYNALI---KGFL--------KRKKYLEARELFEEMRRGGLVADRE 712 (751)
Q Consensus 661 ~~~~~~~~~~~~~p~~-~~~~~l~---~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~ 712 (751)
.+++++|.+.|+...+ .+|..+. ..+. ...-++...++.++|.+.|..||..
T Consensus 548 ~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 548 AKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999876432 2332111 0000 0112455667888888899888754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-63 Score=560.08 Aligned_cols=473 Identities=20% Similarity=0.299 Sum_probs=326.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRG-CSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVV 333 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 333 (751)
+..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 44456666666666777777777776666543 55666777777777777777777777777776666666777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 334 RLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMV 413 (751)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 413 (751)
.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 77777777777777776664 25666777777777777777777777777766666677777777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 414 EAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMC 493 (751)
Q Consensus 414 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 493 (751)
.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|.+ +|+++|+.++.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7777777666666667777777777777777777777777766643 466677777777777777777777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004470 494 RKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVT 573 (751)
Q Consensus 494 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 573 (751)
+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|. .||..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeee
Confidence 7777777777777777777777777777777777777777777777777777777777777777777664 346667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 004470 574 FNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA-QGITPDGNTYNILLQGHC 652 (751)
Q Consensus 574 ~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~ 652 (751)
||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777777764 466677777777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 004470 653 KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLE 732 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (751)
+.|++++|.+++++| +..|+..+|+.|+.+|...|+++.|..+++++.+.+ +.+..+|..+++.|.+.|++++|.+
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHH
Confidence 777777777766654 456677777777777777777777777777665432 2345566677777777777777777
Q ss_pred HHHHHHHcCCC
Q 004470 733 LCDAAIECYLV 743 (751)
Q Consensus 733 ~~~~~~~~~~~ 743 (751)
++++|.++|+.
T Consensus 550 v~~~m~~~g~~ 560 (697)
T PLN03081 550 VVETLKRKGLS 560 (697)
T ss_pred HHHHHHHcCCc
Confidence 77777776653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=382.49 Aligned_cols=624 Identities=13% Similarity=0.065 Sum_probs=527.9
Q ss_pred hHHHHHHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhh----------
Q 004470 98 DHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAF---------- 167 (751)
Q Consensus 98 ~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~---------- 167 (751)
......+....++++.|+..|+.+....+.+..+...++.++...|++++|...+.+++.....+.....
T Consensus 264 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 343 (899)
T TIGR02917 264 HYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG 343 (899)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC
Confidence 3344455566789999999999998888877778888888899999999999999998876422211000
Q ss_pred --HHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHH
Q 004470 168 --THFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFT 245 (751)
Q Consensus 168 --~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~ 245 (751)
......+-......|.++.++..++.++.+.|++++|.++|+++.+. .|+.......++.+....|++++|.+.|+
T Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 421 (899)
T TIGR02917 344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLE 421 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 00111111122334667788999999999999999999999999886 56665555566666667899999999999
Q ss_pred hchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 246 EFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN 325 (751)
Q Consensus 246 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 325 (751)
++.+..+. +......++..+.+.|++++|..+++++... .+++..+|..+...+...|++++|.+.|+++.+.. +.+
T Consensus 422 ~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 498 (899)
T TIGR02917 422 TAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDF 498 (899)
T ss_pred HHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCc
Confidence 99887654 4556677888999999999999999998875 34577889999999999999999999999998764 345
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004470 326 PYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICG 405 (751)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 405 (751)
...+..+...+...|++++|.+.++++...+ +.+..++..+...+.+.|+.++|...++++...+.. +...+..++..
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 576 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQY 576 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHH
Confidence 6778889999999999999999999998874 457788999999999999999999999999877543 67788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 406 FCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETA 485 (751)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 485 (751)
+...|++++|..+++.+... .+.+...|..++..+...|++++|...++++.+..+ .+...+..+...+.+.|++++|
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 654 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKA 654 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999876 355788999999999999999999999999988653 3677889999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 004470 486 NELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDK 565 (751)
Q Consensus 486 ~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 565 (751)
...++++.+.. +.+..++..++..+...|++++|..+++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+.+.
T Consensus 655 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 655 ITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 99999998874 3367889999999999999999999999998876 677888899999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 566 GLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYN 645 (751)
Q Consensus 566 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 645 (751)
+ |+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|.+.|+++.+.. +++...++
T Consensus 733 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 808 (899)
T TIGR02917 733 A--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLN 808 (899)
T ss_pred C--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4 455778889999999999999999999999874 4477888999999999999999999999999864 45788899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 646 ILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG 725 (751)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (751)
.++..+...|+ .+|+..++++.+..+. ++.++..++..+...|++++|.++++++++.+ +.++.++..++..+.+.|
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATG 885 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcC
Confidence 99999999999 8899999999987554 67788899999999999999999999999976 458999999999999999
Q ss_pred ChhHHHHHHHHHHH
Q 004470 726 NTEITLELCDAAIE 739 (751)
Q Consensus 726 ~~~~A~~~~~~~~~ 739 (751)
+.++|.++++++++
T Consensus 886 ~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 886 RKAEARKELDKLLN 899 (899)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999874
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=373.06 Aligned_cols=621 Identities=12% Similarity=0.048 Sum_probs=526.2
Q ss_pred HhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhh------------HHHHH
Q 004470 105 MDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAF------------THFVE 172 (751)
Q Consensus 105 ~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~------------~~~~~ 172 (751)
....++.+.|...|+.+....|.+.......+.+....|++++|...++++++.......... .....
T Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 316 (899)
T TIGR02917 237 LIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQ 316 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Confidence 345688999999999998888877788888888889999999999999999876532110000 00111
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCC
Q 004470 173 RLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGI 252 (751)
Q Consensus 173 ~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~ 252 (751)
.+-......|.++.++..++..+.+.|++++|...+.++.... |+.......++..+...|++++|.++|+++.+..+
T Consensus 317 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 394 (899)
T TIGR02917 317 YLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394 (899)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 1111223346777888899999999999999999999998763 44333333444444578999999999999988765
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 004470 253 CWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSV 332 (751)
Q Consensus 253 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 332 (751)
. +...+..+...+...|++++|.+.|+++.+.+. .+...+..++..+.+.|++++|.++++++... .+++..++..+
T Consensus 395 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l 471 (899)
T TIGR02917 395 E-NAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLL 471 (899)
T ss_pred C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHH
Confidence 4 777888899999999999999999999887653 23455667888899999999999999999876 35578889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 333 VRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKM 412 (751)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 412 (751)
...+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.++++.+.++. +..++..+...+...|+.
T Consensus 472 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 549 (899)
T TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNE 549 (899)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998864 446678888999999999999999999999887644 788899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 413 VEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEM 492 (751)
Q Consensus 413 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 492 (751)
++|...++++...+ +.+...+..++..+.+.|++++|..+++.+.+.. +.+..+|..++..+.+.|++++|...++.+
T Consensus 550 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 550 EEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred HHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998764 4467788889999999999999999999998764 347889999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 004470 493 CRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVV 572 (751)
Q Consensus 493 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 572 (751)
.+... .+...+..+..++.+.|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.+ +.+..
T Consensus 628 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 704 (899)
T TIGR02917 628 LALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAAL 704 (899)
T ss_pred HHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChH
Confidence 88753 367788899999999999999999999998875 6678899999999999999999999999999875 66788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHC 652 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (751)
.+..+...+...|++++|.+.++++...+ |+..++..++..+...|+.++|.+.++++.+.. +.+...+..+...|.
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYL 781 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 89999999999999999999999999864 555778889999999999999999999999864 457888999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 004470 653 KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLE 732 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (751)
+.|++++|...|+++++..+. ++.++..+++.+...|+ .+|+.+++++.+.. +.++..+..++..+...|++++|.+
T Consensus 782 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999998654 88899999999999999 88999999999864 5577788899999999999999999
Q ss_pred HHHHHHHcCCC
Q 004470 733 LCDAAIECYLV 743 (751)
Q Consensus 733 ~~~~~~~~~~~ 743 (751)
.++++++.+..
T Consensus 859 ~~~~a~~~~~~ 869 (899)
T TIGR02917 859 LLRKAVNIAPE 869 (899)
T ss_pred HHHHHHhhCCC
Confidence 99999998765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-29 Score=297.52 Aligned_cols=614 Identities=13% Similarity=0.054 Sum_probs=417.5
Q ss_pred hhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCCh
Q 004470 106 DIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDP 185 (751)
Q Consensus 106 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (751)
.-+++++.|.+.++.+....|.+...+..++.++...|+.++|...++++.+....+ +........ +..-+.+.
T Consensus 39 ~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~---~~~~~~~~~---~~~~~~~~ 112 (1157)
T PRK11447 39 EATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDS---NAYRSSRTT---MLLSTPEG 112 (1157)
T ss_pred HhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCC---hHHHHHHHH---HHhcCCch
Confidence 356789999999999998899999999999999999999999999999999875221 111111111 11113344
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
.....+++.+.+.|++++|++.|+++.+.. .|+..........+....|+.++|++.|+++.+..|. +...+..+...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~l 190 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALL 190 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 456778889999999999999999999764 2332222223333333469999999999999998765 78888999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC------------------CCC-HHHHH-------------------------------
Q 004470 266 LCRFGKIKEAHLLLLQMELRGC------------------SPD-VVSFS------------------------------- 295 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~------------------~p~-~~~~~------------------------------- 295 (751)
+.+.|+.++|+..|+++..... .+. ...+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999999865321 000 00011
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH-------
Q 004470 296 ---TIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVP-DNVIY------- 364 (751)
Q Consensus 296 ---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~------- 364 (751)
.....+...|++++|+..|++..+.. +.+..++..+...+.+.|++++|+..|++.++..... ....+
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 11223445566666666666666542 2245566666666666666666666666666542111 11111
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 365 -----TTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALID 439 (751)
Q Consensus 365 -----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 439 (751)
..+...+.+.|++++|...|+++.+..+. +...+..+...+...|++++|++.|+++++.. +.+...+..+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 11233455666666666666666665432 44555556666666666666666666666542 223444445555
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004470 440 GYCKAGGMKKAFSLHNNMVHMRLT--------PNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGL 511 (751)
Q Consensus 440 ~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~ 511 (751)
.|. .++.++|..+++.+...... .....+..+...+...|++++|++.+++..+..+. +...+..+...+
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 443 34556666665544321100 01123444556667778888888888888776433 566677777788
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHH
Q 004470 512 CKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVV---------TFNVLMNGFC 582 (751)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~~li~~~~ 582 (751)
.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 88888888888888877653 3455555555555667788888888777654332222211 1234456677
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 583 MSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWF 662 (751)
Q Consensus 583 ~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 662 (751)
..|+.++|..+++. .+++...+..+...+...|+.++|++.|++.++.. +.+...+..++..|...|++++|++
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88899999888772 23455677788899999999999999999999863 3367888999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 663 LHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL--VA---DREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 663 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
.++.+.+..+. +..++..++.++...|++++|.+++++++.... +| +...+..++..+...|+.++|++.|+++
T Consensus 659 ~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 659 QLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998876443 667788899999999999999999999987532 22 2356667788999999999999999999
Q ss_pred HHc
Q 004470 738 IEC 740 (751)
Q Consensus 738 ~~~ 740 (751)
+..
T Consensus 738 l~~ 740 (1157)
T PRK11447 738 MVA 740 (1157)
T ss_pred Hhh
Confidence 863
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-27 Score=282.76 Aligned_cols=577 Identities=12% Similarity=0.021 Sum_probs=418.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 004470 128 ILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKL 207 (751)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 207 (751)
....+...+++....++.+.|+..|.+++... |.+|.++..++..+.+.|+.++|.+.
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~----------------------p~~p~~~~~~~~~~l~~g~~~~A~~~ 84 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELID----------------------PNNPDVIAARFRLLLRQGDSDGAQKL 84 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHccC----------------------CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34456677888889999999999999998876 78899999999999999999999999
Q ss_pred HHHHHhCCCccCHHhHH----------------HHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCC
Q 004470 208 FEKLLNYGLVISVDSCN----------------LFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGK 271 (751)
Q Consensus 208 ~~~~~~~g~~p~~~~~~----------------~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 271 (751)
++++.+. .|+...+. ..++.+....|++++|.+.|+++.+.+++........+.......|+
T Consensus 85 l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~ 162 (1157)
T PRK11447 85 LDRLSQL--APDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQ 162 (1157)
T ss_pred HHHHHhh--CCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCcc
Confidence 9999987 46554432 22233445789999999999999987554322222112222234699
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------C----------
Q 004470 272 IKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGL------------------K---------- 323 (751)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------~---------- 323 (751)
.++|++.|+++.+... -+...+..+...+...|++++|++.++++..... .
T Consensus 163 ~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~ 241 (1157)
T PRK11447 163 RPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKY 241 (1157)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHH
Confidence 9999999999988643 4677788899999999999999999999865321 0
Q ss_pred ----CCcccH---------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004470 324 ----PNPYTY---------------------NSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVA 378 (751)
Q Consensus 324 ----p~~~~~---------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 378 (751)
|+.... ......+...|++++|+..|++.++.. +.+..++..|...|.+.|+++
T Consensus 242 l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~ 320 (1157)
T PRK11447 242 LQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRA 320 (1157)
T ss_pred HHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 010000 011334556778888888888777753 336677777777888888888
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004470 379 AAYRLFDEMRGLNIIPD-LLTYT------------AIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAG 445 (751)
Q Consensus 379 ~A~~~~~~m~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 445 (751)
+|...|++..+...... ...|. .....+.+.|++++|+..|++++... +.+...+..+...+...|
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g 399 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARK 399 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 88888887776543221 11111 12345567788888888888877762 335566667777788888
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCCH
Q 004470 446 GMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQ--------LNIYTYNSIVNGLCKAGNI 517 (751)
Q Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~ 517 (751)
++++|.+.|+++.+..+. +...+..+...+. .++.++|..+++.+...... .....+..+...+...|++
T Consensus 400 ~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~ 477 (1157)
T PRK11447 400 DYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKW 477 (1157)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCH
Confidence 888888888887765432 4555666666654 45677777777654332100 0122344566677788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 518 LQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWM 597 (751)
Q Consensus 518 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 597 (751)
++|++.+++..+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+
T Consensus 478 ~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 478 AQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 99999999888765 4567777888888899999999999999888653 335555555555667788889998888776
Q ss_pred HHcCCCCCH---------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 598 LEKGLKPNA---------ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMV 668 (751)
Q Consensus 598 ~~~g~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 668 (751)
......++. ..+..+...+...|+.++|.++++. .+++...+..+...+.+.|++++|+..|++++
T Consensus 556 ~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al 630 (1157)
T PRK11447 556 PRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVL 630 (1157)
T ss_pred CchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 433222221 1123455678889999999998872 24566777889999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 669 QKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 669 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
+..+. +...+..++..|...|++++|++.++.+.+.. +.+...+..++.++.+.|++++|.++++++++...
T Consensus 631 ~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 631 TREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 98655 78899999999999999999999999988753 45667778889999999999999999999998653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-25 Score=252.53 Aligned_cols=592 Identities=13% Similarity=0.032 Sum_probs=420.8
Q ss_pred hHHHHHHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHh
Q 004470 98 DHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYT 177 (751)
Q Consensus 98 ~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (751)
......+...++|++.|+..|+.+....|.+..++..++.++...|++++|+..++++++.+
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld------------------ 108 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH------------------ 108 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------------
Confidence 34445566667999999999999999999999999999999999999999999999999876
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHH-----hCCCCHHHHHHHHHhchhcCC
Q 004470 178 YKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLS-----NTCDGLRMVVKSFTEFPELGI 252 (751)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~-----~~~~~~~~a~~~~~~~~~~~~ 252 (751)
|.+...+..|+.. +++++|..+|+++.+. .|+.......+..+. ....+.++|.+..+ .....+
T Consensus 109 ----P~n~~~~~~La~i----~~~~kA~~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~ 177 (987)
T PRK09782 109 ----PGDARLERSLAAI----PVEVKSVTTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAA 177 (987)
T ss_pred ----cccHHHHHHHHHh----ccChhHHHHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCC
Confidence 5555555555443 9999999999999988 677776666666650 01244566777776 444444
Q ss_pred CcCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCcccHH
Q 004470 253 CWNTASYNIM-IHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCY-LGELQRVLKLIEEMQIKGLKPNPYTYN 330 (751)
Q Consensus 253 ~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~ 330 (751)
.|+..+.... ...|.+.|++++|++++.++.+.+. .+......|...|.. .++ +++..++.. .++-+.....
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHH
Confidence 5455555544 8999999999999999999998865 455557777778887 477 777777553 2335788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHH------------------------------HHHHHHHHcCCHHH
Q 004470 331 SVVRLLCKTSKVVEAETILREMMNQGIV-PDNVIYT------------------------------TLIDGFCKMGNVAA 379 (751)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~------------------------------~li~~~~~~g~~~~ 379 (751)
.++..|.+.|+.++|.++++++...-.. |...++. .++..+.+.++++.
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999987654211 2222221 22555666666665
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004470 380 AYRLFDEMRGLNIIPDLLTYTAIICG--FCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNM 457 (751)
Q Consensus 380 A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 457 (751)
+.++.. +.|.... ..+.. ....+...++...+..|.... +-+.....-+.-...+.|+.++|.++++..
T Consensus 332 ~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~ 402 (987)
T PRK09782 332 AQKLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQR 402 (987)
T ss_pred HHHHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 554421 2232222 12222 223356666666666666651 224455545555567788888888888887
Q ss_pred HhC-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHHc-C-CCC--CHHHHHH
Q 004470 458 VHM-R-LTPNVVTYTALADGLCKSGE---LETANEL----------------------LHEMCRK-G-LQL--NIYTYNS 506 (751)
Q Consensus 458 ~~~-~-~~~~~~~~~~li~~~~~~g~---~~~A~~l----------------------~~~m~~~-g-~~~--~~~~~~~ 506 (751)
... + -.++......++..|.+.+. ..++..+ ++..... + .++ +...|..
T Consensus 403 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~ 482 (987)
T PRK09782 403 YPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNR 482 (987)
T ss_pred cCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHH
Confidence 762 1 12244455567777777655 2333222 1111111 1 133 5667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004470 507 IVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGM 586 (751)
Q Consensus 507 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 586 (751)
+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...++++... +|+...+..+...+.+.|+
T Consensus 483 LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd 557 (987)
T PRK09782 483 LAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGN 557 (987)
T ss_pred HHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCC
Confidence 7777766 7888899988877765 466555444555556889999999999987654 4555556677778888999
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 587 IEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKE 666 (751)
Q Consensus 587 ~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 666 (751)
.++|...+++.++... ++...+..+.......|++++|...+++.++. .|+...+..+...+.+.|++++|+..+++
T Consensus 558 ~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 558 GAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred HHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999998887642 22333333334444569999999999999874 56778888888999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 667 MVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 667 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
+++..+. +...+..+...+...|++++|+..++++++.. |.+...+..++.++...|++++|+..++++++....
T Consensus 635 AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 635 ALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9988655 77888889999999999999999999998864 567788889999999999999999999999887654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-22 Score=231.87 Aligned_cols=556 Identities=12% Similarity=0.007 Sum_probs=408.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFE 209 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 209 (751)
..++..+..+...|++++|...++++++.+ |.++.++..|++.|...|++++|+..++
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d----------------------P~n~~~~~~LA~~yl~~g~~~~A~~~~~ 102 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQV----------------------PDNIPLTLYLAEAYRHFGHDDRARLLLE 102 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345555666677799999999999999876 7788899999999999999999999999
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH--------HHhcCCHHHHHHHHHH
Q 004470 210 KLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC--------LCRFGKIKEAHLLLLQ 281 (751)
Q Consensus 210 ~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~ 281 (751)
++++. .|+...+...+..+ +++++|..+|+++.+..+. +..++..+... |.+.++..++++
T Consensus 103 kAv~l--dP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~---- 171 (987)
T PRK09782 103 DQLKR--HPGDARLERSLAAI----PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN---- 171 (987)
T ss_pred HHHhc--CcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH----
Confidence 99998 78888777777655 7889999999999999776 66677776666 666655555554
Q ss_pred HHhcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCC
Q 004470 282 MELRGCSPDVVSFSTI-INGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK-TSKVVEAETILREMMNQGIVP 359 (751)
Q Consensus 282 m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p 359 (751)
.......|+..+.... ...|.+.|++++|++++.++.+.+.. +......|...|.. .++ +++..+++.. +..
T Consensus 172 lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~ 245 (987)
T PRK09782 172 DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFT 245 (987)
T ss_pred HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----ccc
Confidence 3332233445444444 89999999999999999999998633 45557777778887 477 8888875542 235
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHH------------------------------HHHHHh
Q 004470 360 DNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNII-PDLLTYTAI------------------------------ICGFCL 408 (751)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l------------------------------i~~~~~ 408 (751)
+......+++.|.+.|+.++|.++++++...... |...+|.-+ +..+.+
T Consensus 246 d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (987)
T PRK09782 246 DPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLK 325 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999987654322 333332221 344445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 409 TGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGY--CKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETAN 486 (751)
Q Consensus 409 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 486 (751)
.++++.++++. .+.|.... ..++.. ...+...++...+..|.+... -+......+.-...+.|+.++|.
T Consensus 326 ~~~~~~~~~~~------~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~ 396 (987)
T PRK09782 326 EGQYDAAQKLL------ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAA 396 (987)
T ss_pred ccHHHHHHHHh------cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHH
Confidence 55555444331 13333332 222222 234666777777777766532 25666666666678899999999
Q ss_pred HHHHHHHHc-C-CCCCHHHHHHHHHHHHHcCC---HHHHHHH----------------------H---HHHHHCCCCC--
Q 004470 487 ELLHEMCRK-G-LQLNIYTYNSIVNGLCKAGN---ILQAVKL----------------------M---EDMEVAGFHP-- 534 (751)
Q Consensus 487 ~l~~~m~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~---~~~~~~~~~~-- 534 (751)
++++..... + ..++.....-++..|.+.+. ..++..+ + ...... .++
T Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~ 475 (987)
T PRK09782 397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSY 475 (987)
T ss_pred HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCC
Confidence 999998763 1 22344455577777777665 3333322 1 112211 134
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004470 535 DTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIK 614 (751)
Q Consensus 535 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~ 614 (751)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++++... .|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 67788888888776 8999999988888765 456554444555567899999999999998664 445555667778
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 615 QHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 694 (751)
.+...|+.++|.+.+++.++.+ +++...+..+...+.+.|++++|...++++++.. |+...+..++.++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 8899999999999999999864 2233344444445556799999999999999875 468899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 695 ARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 695 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
|+..++++++.. |.+...+..++..+...|+.++|++.++++++..+.
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 999999999975 667888999999999999999999999999987653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-22 Score=212.17 Aligned_cols=598 Identities=12% Similarity=0.038 Sum_probs=449.5
Q ss_pred hHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHH
Q 004470 111 YRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDI 190 (751)
Q Consensus 111 ~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 190 (751)
.+.|..-|.++.++.|++..++.--+.++...++|..|..++..++..+ +.|++++ ...
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~in-------------------p~~~aD~--rIg 204 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRIN-------------------PACKADV--RIG 204 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcC-------------------cccCCCc--cch
Confidence 4789999999999999999999999999999999999999999987654 2234444 344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhC---CCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHH
Q 004470 191 FFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNT---CDGLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267 (751)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (751)
.+.++.+.|+.+.|+..|.++++. .|+.+.....|+.+-.. ...+..+...+..+-..... |+.+.+.|.+.|.
T Consensus 205 ig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fy 281 (1018)
T KOG2002|consen 205 IGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFY 281 (1018)
T ss_pred hhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHh
Confidence 567788999999999999999987 67666666666555433 24566788888877766554 8899999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 004470 268 RFGKIKEAHLLLLQMELRGCS--PDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEA 345 (751)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 345 (751)
-.|+++.++.+...+...... .-..+|-.+..+|-..|++++|...|-+..+....--+..+.-|...+.+.|+++.+
T Consensus 282 fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 282 FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHH
Confidence 999999999999998765321 123457788999999999999999999887763221244566788999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 346 ETILREMMNQGIVPDNVIYTTLIDGFCKMG----NVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHE 421 (751)
Q Consensus 346 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 421 (751)
...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+.-+. |...|-.+...+-.. +...++..|..
T Consensus 362 ~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~-d~~~sL~~~~~ 438 (1018)
T KOG2002|consen 362 KFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQT-DPWASLDAYGN 438 (1018)
T ss_pred HHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhc-ChHHHHHHHHH
Confidence 99999999873 445677788888888775 567788888887776533 777787777666554 44444776655
Q ss_pred HH----HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC---CCC------CCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 422 ML----GRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHM---RLT------PNVVTYTALADGLCKSGELETANEL 488 (751)
Q Consensus 422 m~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~------~~~~~~~~li~~~~~~g~~~~A~~l 488 (751)
.. ..+-.+.....|.+...+...|.+++|...|...... ... +++.+-..+...+-..++.+.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 43 4556678899999999999999999999999988765 112 2333344566667778899999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Q 004470 489 LHEMCRKGLQLNI-YTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKG- 566 (751)
Q Consensus 489 ~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 566 (751)
|..+.+.. |.- ..|-.++-.....++..+|...+++....+ ..++..++.+...+.+..++..|.+-|+...+.-
T Consensus 519 Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~ 595 (1018)
T KOG2002|consen 519 YKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTS 595 (1018)
T ss_pred HHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhc
Confidence 99998873 333 344444433334578889999999988765 5677777778888899999999988777766431
Q ss_pred CCCCHHHHHHHHHHHHh------------cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 567 LQPSVVTFNVLMNGFCM------------SGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 567 ~~p~~~~~~~li~~~~~------------~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
..+|..+.-.|.+.|.. .+..++|+++|.+.+.... -|...-|.+.-.++..|++.+|..+|.+..+
T Consensus 596 ~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 596 TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 23577777777775542 2456788888888887643 3667777888888999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 635 QGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK-GFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREI 713 (751)
Q Consensus 635 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 713 (751)
... .+..+|-.+.++|...|++..|++.|+...++ +..-+..+...|..++.+.|++.+|.+.+..++... +-|+..
T Consensus 675 a~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~-p~~~~v 752 (1018)
T KOG2002|consen 675 ATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA-PSNTSV 752 (1018)
T ss_pred HHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-CccchH
Confidence 642 34566778899999999999999999988775 444567888899999999999999999999888754 334433
Q ss_pred HHHHHHH-------------------HHhcCChhHHHHHHHHHHHcC
Q 004470 714 YYFFVDI-------------------NFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 714 ~~~l~~~-------------------~~~~g~~~~A~~~~~~~~~~~ 741 (751)
...++-. ....+..++|.++|.++...+
T Consensus 753 ~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 753 KFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3322222 222345666777777766554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-21 Score=203.17 Aligned_cols=550 Identities=13% Similarity=0.061 Sum_probs=413.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNY--GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASY 259 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 259 (751)
|.+.-.+..=+......|++..|+.+|..++.. .+.||+. ..++-+.-+.|+.+.|+..|.++.+.+|. ++.++
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r---Igig~Cf~kl~~~~~a~~a~~ralqLdp~-~v~al 236 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR---IGIGHCFWKLGMSEKALLAFERALQLDPT-CVSAL 236 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc---chhhhHHHhccchhhHHHHHHHHHhcChh-hHHHH
Confidence 555444444444455678999999999997654 3456653 23344444789999999999999999763 55555
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCcccHHHHHH
Q 004470 260 NIMIHCLCRFG---KIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLK--PNPYTYNSVVR 334 (751)
Q Consensus 260 ~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~ 334 (751)
-.|...-.... .+..+..++...-.... -|++..+.|.+.|.-.|++..++.+.+.+...... .-...|-.+.+
T Consensus 237 v~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 237 VALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 55544333333 45566777766544322 47778899999999999999999999999876311 12345888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--
Q 004470 335 LLCKTSKVVEAETILREMMNQGIVPDN--VIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTG-- 410 (751)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-- 410 (751)
+|...|++++|...|.+..+. .+|. ..+--|...|.+.|+++.+...|+.+....+. +..+...+...|...+
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhh
Confidence 999999999999999988876 3444 34456788999999999999999999887543 6777777777777765
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 411 --KMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMV----HMRLTPNVVTYTALADGLCKSGELET 484 (751)
Q Consensus 411 --~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~ 484 (751)
..+.|..++.+..+. .+.|...|-.+...+... +...++..+..+. ..+-.+.+...|.+.......|++++
T Consensus 393 ~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~ 470 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEK 470 (1018)
T ss_pred hHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHH
Confidence 567777787777766 345777887777766554 4444476666554 44555788999999999999999999
Q ss_pred HHHHHHHHHHc---CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004470 485 ANELLHEMCRK---GLQLNI------YTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKA 555 (751)
Q Consensus 485 A~~l~~~m~~~---g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 555 (751)
|...|...... ...+|. .+-..+..++-..++.+.|.+.+..+.+.. +.-+..|-.++......+...+|
T Consensus 471 A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea 549 (1018)
T KOG2002|consen 471 ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEA 549 (1018)
T ss_pred HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHH
Confidence 99999988765 122222 233445666677889999999999998874 33345555555444455788999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHH------------HcCCH
Q 004470 556 HELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKG-LKPNAATYNPLIKQHC------------LRNDM 622 (751)
Q Consensus 556 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g-~~p~~~~~~~l~~~~~------------~~g~~ 622 (751)
...++.....+ ..++..+..+...+.+...+..|.+-|......- ..+|......|...|. ..+..
T Consensus 550 ~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 550 SLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 99999998754 5577778888888998889999988777776542 2357666666666543 23467
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 623 RTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEM 702 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 702 (751)
++|+++|.+.++.. +-|...-|.+.-.++..|++.+|..+|.+..+.... ...+|..++.+|...|+|-.|+++|+..
T Consensus 629 ~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 629 EKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999864 347888888999999999999999999999987542 6778999999999999999999999999
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 703 RRG-GLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLVGK 745 (751)
Q Consensus 703 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (751)
.+. .-..+..+...|++++++.|.+.+|.+.+..++...+...
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence 874 3355788999999999999999999999999988766544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-22 Score=200.41 Aligned_cols=445 Identities=15% Similarity=0.102 Sum_probs=335.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 004470 259 YNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK 338 (751)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 338 (751)
...|..-..+.|++.+|++.-...-..+. .+....-.+-.++.+..+.+.....-....+.. +--..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 44566667788888888876655443322 233333344455666666766655544444442 3356788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 004470 339 TSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTY-TAIICGFCLTGKMVEAEK 417 (751)
Q Consensus 339 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~ 417 (751)
.|++++|+..++.+++.. +-.+..|..+..++...|+.+.|.+.|.+..+.+ |+.... +.+...+-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 888888888888888863 3356788888888888888888888888887754 554433 334445556788888888
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004470 418 LFHEMLGRGLEPD-EIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKG 496 (751)
Q Consensus 418 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 496 (751)
.|.+.++. .|. ...|+.|...+-.+|+...|+.-|++.++..+. -...|-.|.+.|...+.++.|...+.+.....
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 88888765 333 456788888888888888888888888876422 35678888888888888888888888877653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004470 497 LQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNV 576 (751)
Q Consensus 497 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 576 (751)
. .....+..+.-.|..+|.++-|+..+++..+.. +.=...|+.|..++-..|++.+|.+.+++.+... +....+.+.
T Consensus 283 p-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 P-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred C-cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 2 245667777777888899999999999888764 3347788889999988899999999999888763 446677888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 004470 577 LMNGFCMSGMIEDGEKLLKWMLEKGLKPN-AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD-GNTYNILLQGHCKA 654 (751)
Q Consensus 577 li~~~~~~g~~~~A~~l~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 654 (751)
|...|...|.+++|..+|....+- .|. ...++.|...|-.+|++++|+..|++.++ +.|+ ...|+.+...|-..
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 899999999999999999888874 343 45678888889999999999999999887 6776 66788999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 004470 655 RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD-REIYYFFVDIN 721 (751)
Q Consensus 655 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 721 (751)
|+.+.|+..+.+++..++. -...++.|+..|-..|+..+|+.-|+.+++. .|| +..|..++.++
T Consensus 436 g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred hhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence 9999999999999887544 4568889999999999999999999999884 444 45555555544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-21 Score=196.74 Aligned_cols=446 Identities=13% Similarity=0.096 Sum_probs=322.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFE 209 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 209 (751)
.....++|.+...|++++|++.-..+...+ |.+.....++...+.+..+++.....-.
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d----------------------~t~~~~llll~ai~~q~~r~d~s~a~~~ 106 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQED----------------------PTNTERLLLLSAIFFQGSRLDKSSAGSL 106 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccC----------------------CCcccceeeehhhhhcccchhhhhhhhh
Confidence 446778899999999999988776665544 2233334445555666666666665555
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 004470 210 KLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSP 289 (751)
Q Consensus 210 ~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (751)
..++. .|--..+-.-++..++..|+++.|+..|+.+++..+. .+..|..+..++...|+.+.|.+.|.+..+.+ |
T Consensus 107 ~a~r~--~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P 181 (966)
T KOG4626|consen 107 LAIRK--NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--P 181 (966)
T ss_pred hhhhc--cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--c
Confidence 55544 3433333333445556778888888888888887655 67788888888888888888888888777643 4
Q ss_pred CHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 004470 290 DVVSF-STIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPD-NVIYTTL 367 (751)
Q Consensus 290 ~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 367 (751)
+.... +-+...+-..|+..+|...+.+..+.. +-=...|..|...+-.+|+.-.|++-|++..+. .|+ ..+|..|
T Consensus 182 ~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNL 258 (966)
T KOG4626|consen 182 DLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINL 258 (966)
T ss_pred chhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhH
Confidence 44333 334444555788888888888777652 123566888888888888888888888888876 333 4678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 004470 368 IDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD-EIVYTALIDGYCKAGG 446 (751)
Q Consensus 368 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 446 (751)
...|...+.+++|...|.+.....+. ..+.+..+...|..+|.++-|+..|++.++. .|+ ...|+.|..++-..|+
T Consensus 259 GnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 259 GNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccc
Confidence 88888888888888888887765322 4666777777788888888888888888875 444 5678888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 447 MKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMED 526 (751)
Q Consensus 447 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 526 (751)
+.+|.+.+++.+...+. .....+.|.+.|...|.+++|..+|....+-... -...++.|...|-++|++++|+..+++
T Consensus 336 V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred hHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 88888888888876433 5677888888888888888888888888765322 345678888888888888888888888
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 527 MEVAGFHPD-TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPN 605 (751)
Q Consensus 527 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~ 605 (751)
.... .|+ ...|+.+...|-..|+.+.|...+.+.+..+ +.-....+.|...|-..|++.+|++-+++.++. +||
T Consensus 414 alrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPD 488 (966)
T KOG4626|consen 414 ALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPD 488 (966)
T ss_pred HHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCC
Confidence 8765 444 6778888888888888888888888888753 224567788888888888888888888888874 555
Q ss_pred H-hhHHHHHHH
Q 004470 606 A-ATYNPLIKQ 615 (751)
Q Consensus 606 ~-~~~~~l~~~ 615 (751)
. ..|..++.+
T Consensus 489 fpdA~cNllh~ 499 (966)
T KOG4626|consen 489 FPDAYCNLLHC 499 (966)
T ss_pred CchhhhHHHHH
Confidence 3 345445444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-19 Score=201.53 Aligned_cols=433 Identities=12% Similarity=-0.013 Sum_probs=294.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 004470 256 TASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRL 335 (751)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 335 (751)
...+......+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.+++..+.. +.+..+|..+..+
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a 203 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 345667888999999999999999998764 4778889899999999999999999999988874 3356788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 336 LCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEA 415 (751)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 415 (751)
|...|++++|...|......+...+. ....++..+.. ..+.....+..+... ++...+..+.. +......+.+
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcc
Confidence 99999999999888776654322222 22222222222 222233333322221 12222222222 2222122222
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHH---HHcCChhHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 416 EKLFHEMLGRGLEPDE-IVYTALIDGY---CKAGGMKKAFSLHNNMVHMR-L-TPNVVTYTALADGLCKSGELETANELL 489 (751)
Q Consensus 416 ~~~~~~m~~~~~~p~~-~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~l~ 489 (751)
..-+.+..+. .+.. ..+..+...+ ...+++++|...|++..+.+ . +.....+..+...+...|++++|+..+
T Consensus 277 ~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 277 PAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2222211111 1111 1111111111 23467888999998888764 1 224556778888888889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 004470 490 HEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQP 569 (751)
Q Consensus 490 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 569 (751)
++..+.... +...|..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|...|++.++.. +.
T Consensus 355 ~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 355 SKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 888876422 45677788888888899999999998887765 5567888888888888999999999998888764 44
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------H
Q 004470 570 SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGN------T 643 (751)
Q Consensus 570 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~ 643 (751)
+...+..+...+.+.|++++|+..+++.++.. +.+...++.+...+...|++++|.+.|++.++.....+.. .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 67777788888888899999999998888752 2356778888888888899999999998888743211111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
++.....+...|++++|.++++++++.++. +...+..++..+.+.|++++|++.|+++.+.
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 122222334468888999988888877544 5567888888888889999999988888775
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-19 Score=197.13 Aligned_cols=427 Identities=12% Similarity=0.014 Sum_probs=308.1
Q ss_pred HHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 004470 228 SRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGEL 307 (751)
Q Consensus 228 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 307 (751)
+..+...|++++|+..|++++... |+...|..+..+|.+.|++++|++.++...+... .+...|..+..+|...|++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCH
Confidence 333446899999999999998874 5677899999999999999999999999887643 4677888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 308 QRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEM 387 (751)
Q Consensus 308 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (751)
++|+..|......+.. +......++..+.. ..+.....+..+.. +++...+..+.. |....+.+.+..-+++.
T Consensus 211 ~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 211 ADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 9999998877654211 11111222222111 22333333333332 222223332222 32222222222222222
Q ss_pred HhCCCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 004470 388 RGLNIIPD-LLTYTAIICG---FCLTGKMVEAEKLFHEMLGRG-LEP-DEIVYTALIDGYCKAGGMKKAFSLHNNMVHMR 461 (751)
Q Consensus 388 ~~~~~~p~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 461 (751)
.+. .|. ...+..+... ....+++++|++.|++.++.+ ..| ....+..+...+...|++++|+..+++.++..
T Consensus 284 ~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 284 NEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred ccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 221 111 1111111111 123478999999999999864 233 45678888888999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004470 462 LTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTT 541 (751)
Q Consensus 462 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 541 (751)
+. +...|..+...+...|++++|...++++.+... .+...|..+...+...|++++|...|++..+.. +.+...+..
T Consensus 362 P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 362 PR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 32 466888899999999999999999999988753 367889999999999999999999999999875 566788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh------hHHHHHHH
Q 004470 542 IMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAA------TYNPLIKQ 615 (751)
Q Consensus 542 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~------~~~~l~~~ 615 (751)
+...+.+.|++++|...|++.++.. +.+...++.+...+...|++++|++.|++..+.....+.. .++..+..
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 9999999999999999999998763 5578889999999999999999999999998763221111 12222233
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKG 671 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 671 (751)
+...|++++|.+++++.++.+ +.+...+..++..+.+.|++++|++.|+++.+..
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 445799999999999998854 2345678889999999999999999999998763
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-20 Score=198.90 Aligned_cols=306 Identities=14% Similarity=0.080 Sum_probs=199.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcC---HHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWN---TASYNIMIH 264 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~ 264 (751)
...++..+...|++++|+..|.++++. .|+.......++.++...|++++|..+++.+...+..++ ..++..++.
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 344566677788888888888888876 455554445555555567888888888887776532221 245677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcC
Q 004470 265 CLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNP----YTYNSVVRLLCKTS 340 (751)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g 340 (751)
.|.+.|++++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 7888888888888888777642 245667777777788888888888888877765432211 13445566666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 341 KVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFH 420 (751)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (751)
++++|...++++.+.. +.+...+..+...|.+.|++++|.++++++.+.+......+++.++.+|+..|++++|...++
T Consensus 195 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 195 DLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777776653 234456666667777777777777777777654332223456666677777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCC
Q 004470 421 EMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCK---SGELETANELLHEMCRKGL 497 (751)
Q Consensus 421 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~ 497 (751)
++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..++. .|+.+++..++++|.+.++
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 76654 344445566666677777777777777666654 3566666666665554 3466667777776666555
Q ss_pred CCCH
Q 004470 498 QLNI 501 (751)
Q Consensus 498 ~~~~ 501 (751)
.|++
T Consensus 350 ~~~p 353 (389)
T PRK11788 350 KRKP 353 (389)
T ss_pred hCCC
Confidence 5444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-20 Score=196.73 Aligned_cols=298 Identities=17% Similarity=0.131 Sum_probs=137.6
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCChh
Q 004470 372 CKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD---EIVYTALIDGYCKAGGMK 448 (751)
Q Consensus 372 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~ 448 (751)
...|++++|...|+++.+.++. +..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3444444444444444443221 233444444444444555555554444443321111 123444444555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHH
Q 004470 449 KAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNI----YTYNSIVNGLCKAGNILQAVKLM 524 (751)
Q Consensus 449 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~ 524 (751)
+|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555554432 123444555555555555555555555555444322111 12233444445555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004470 525 EDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKP 604 (751)
Q Consensus 525 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p 604 (751)
+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|+..|++++|...++++.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 5554432 22344444555555555555555555555554321111234445555555555555555555555443 23
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK---ARNMKEAWFLHKEMVQKGFNLTT 676 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~ 676 (751)
+...+..++..+.+.|++++|.++++++.+. .|+..++..++..++. .|+.++|+.++++|.++++.|++
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 3333444455555555555555555555442 3444444444444442 23455555555555544433333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-18 Score=192.14 Aligned_cols=336 Identities=12% Similarity=0.038 Sum_probs=244.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFE 209 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 209 (751)
......+.-+..+|++++|..++...+... |.++.++..|+.++...|++++|...|+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~----------------------p~~~~~l~~l~~~~l~~g~~~~A~~~l~ 100 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA----------------------KNGRDLLRRWVISPLASSQPDAVLQVVN 100 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC----------------------CCchhHHHHHhhhHhhcCCHHHHHHHHH
Confidence 334445556667888888888888877654 5666677778888888888888888888
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 004470 210 KLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSP 289 (751)
Q Consensus 210 ~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (751)
++++. .|+.......++.++...|++++|...|+++....+. +...+..++..+...|++++|...++.+......
T Consensus 101 ~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~- 176 (656)
T PRK15174 101 KLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP- 176 (656)
T ss_pred HHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-
Confidence 88876 6776666666666666778888888888888877544 6777888888888888888888888877654432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 290 DVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLID 369 (751)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 369 (751)
+...+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|...++++.... +.+...+..+..
T Consensus 177 ~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~ 254 (656)
T PRK15174 177 RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGL 254 (656)
T ss_pred CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 23333333 3467788888888888887766433344455555677788888888888888888764 345667777888
Q ss_pred HHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004470 370 GFCKMGNVAA----AYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAG 445 (751)
Q Consensus 370 ~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 445 (751)
.|.+.|++++ |...|++..+..+. +...+..+...+...|++++|+..+++.+... +.+...+..+...+.+.|
T Consensus 255 ~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 255 AYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 8888888875 78888888776543 56777888888888888888888888887753 334566677778888888
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004470 446 GMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKG 496 (751)
Q Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 496 (751)
++++|...++++.+.++. +...+..+...+...|+.++|...|++..+..
T Consensus 333 ~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 333 QYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888888888888775432 22334445667788888888888888887763
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-16 Score=165.07 Aligned_cols=586 Identities=12% Similarity=0.065 Sum_probs=307.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 129 LEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
+......+..+...|++++|..++.++++.+ |.++.+|..|+.+|-..|+.++++...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd----------------------p~~~~ay~tL~~IyEqrGd~eK~l~~~ 196 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD----------------------PRNPIAYYTLGEIYEQRGDIEKALNFW 196 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----------------------ccchhhHHHHHHHHHHcccHHHHHHHH
Confidence 3444555666666677777777777777665 556666777777777777777777666
Q ss_pred HHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004470 209 EKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCS 288 (751)
Q Consensus 209 ~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (751)
-.+... .|+....=..++.+..+.|.+++|+-.|.++++..|. |...+-.-+..|-+.|+...|.+-|.++.....+
T Consensus 197 llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 197 LLAAHL--NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHhc--CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 555544 3333322233444444667777777777777766544 3333333344566667777777777776654321
Q ss_pred CCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------
Q 004470 289 PDVVSFS----TIINGYCYLGELQRVLKLIEEMQIK-GLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQG------- 356 (751)
Q Consensus 289 p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------- 356 (751)
.|..-.. .++..+...++-+.|++.++..... +-..+...++.++..+.+...++.|......+....
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 1211111 2334455555556666666666542 112345556666666666666666666665555411
Q ss_pred --------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 004470 357 --------------------IVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLN--IIPDLLTYTAIICGFCLTGKMVE 414 (751)
Q Consensus 357 --------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~ 414 (751)
+.++..+. -++-++......+....+.......+ +.-+...|.-+..++...|++.+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~ 432 (895)
T KOG2076|consen 354 WDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKE 432 (895)
T ss_pred hhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHH
Confidence 11222221 11122222222222222222233333 33345556666667777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 415 AEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCR 494 (751)
Q Consensus 415 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 494 (751)
|+.+|..+......-+...|-.+..+|...|.+++|.+.|+.++...+. +...-..|...+.+.|+.++|.+.++.+..
T Consensus 433 Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 433 ALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 7777777666533334556666677777777777777777776665332 455555666666677777777777666432
Q ss_pred c--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------------------------------------
Q 004470 495 K--------GLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVA------------------------------------ 530 (751)
Q Consensus 495 ~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------------------------ 530 (751)
- +..|+..........+.+.|+.++=+.....|...
T Consensus 512 ~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~ 591 (895)
T KOG2076|consen 512 PDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIR 591 (895)
T ss_pred CCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHH
Confidence 1 22333333333444455555554433332222110
Q ss_pred ---------------------------CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHH----HHHH
Q 004470 531 ---------------------------GFHPDT--FTYTTIMDAYCKSGEMVKAHELLRDMLDKGL-QPSVV----TFNV 576 (751)
Q Consensus 531 ---------------------------~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~----~~~~ 576 (751)
|..-+. ..+.-++..+++.+++++|..+...+..... ..+.. .-..
T Consensus 592 ~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~ 671 (895)
T KOG2076|consen 592 AREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFL 671 (895)
T ss_pred HHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHH
Confidence 000000 1123344555566666666666555543211 01111 1122
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc-CCC--C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 577 LMNGFCMSGMIEDGEKLLKWMLEK-GLK--P-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHC 652 (751)
Q Consensus 577 li~~~~~~g~~~~A~~l~~~~~~~-g~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (751)
.+.+.+..+++..|...++.|... +.. | ....|+.......+.++-.--.+++..+.......+...+....+.+.
T Consensus 672 ~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~ 751 (895)
T KOG2076|consen 672 GLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLF 751 (895)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHh
Confidence 333444556666666666666543 111 1 112333333333333333222233332222111111222222233345
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q 004470 653 KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK----------RKKYLEARELFEEMRRGG-LVADREIYYFFVDIN 721 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~ 721 (751)
..+.+..|+..+-++....+. +|.+-..++-++.. +-..-.++.++.+..+.. .....+.++.++++|
T Consensus 752 ~~~s~~~Al~~y~ra~~~~pd-~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRay 830 (895)
T KOG2076|consen 752 VNASFKHALQEYMRAFRQNPD-SPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAY 830 (895)
T ss_pred hccchHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 667888899888777765433 34443344444331 122345666666665532 122567888899999
Q ss_pred HhcCChhHHHHHHHHHHHcCC
Q 004470 722 FEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~ 742 (751)
...|=..-|..+|+++++-.+
T Consensus 831 h~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 831 HQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHcccHHHHHHHHHHHhCCCc
Confidence 999999999999999998863
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-18 Score=189.27 Aligned_cols=336 Identities=12% Similarity=0.070 Sum_probs=274.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
.-...++..+.++|++++|+.+++..+.. .|+.......++......|++++|...|+++.+..|. +...+..+...
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~ 119 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASV 119 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 34556788899999999999999999988 5555555555555555689999999999999998766 78889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 004470 266 LCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEA 345 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 345 (751)
+.+.|++++|+..|+++.... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 999999999999999998753 245778888999999999999999999988766322 33333333 357889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHH
Q 004470 346 ETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVE----AEKLFHE 421 (751)
Q Consensus 346 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~ 421 (751)
...++.+++....++...+..+...+.+.|++++|...+++..+.... +...+..+...+...|++++ |+..+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999999888743344555666678899999999999999999987644 67788889999999999986 8999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004470 422 MLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNI 501 (751)
Q Consensus 422 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~ 501 (751)
.+... +.+...+..+...+...|++++|...+++..+..+. +...+..+...+.+.|++++|...++.+.+.+.. +.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~ 352 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TS 352 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-ch
Confidence 98763 346778899999999999999999999999987644 5677888999999999999999999999887432 33
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004470 502 YTYNSIVNGLCKAGNILQAVKLMEDMEVAG 531 (751)
Q Consensus 502 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 531 (751)
..+..+..++...|+.++|...|++..+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344445678899999999999999988763
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-18 Score=192.24 Aligned_cols=404 Identities=10% Similarity=0.008 Sum_probs=213.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 290 DVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLID 369 (751)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 369 (751)
+.....-.+......|+.++|++++.+..... +.+...+..+...+...|++++|.+++++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44444455666677788888888888776521 3344457777888888888888888888877752 334566677777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 004470 370 GFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKK 449 (751)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 449 (751)
.+.+.|++++|...+++..+..+. +.. +..+...+...|+.++|+..++++++.. +.+...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 788888888888888888776432 444 7777777778888888888888887762 2245555566777777777777
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHH
Q 004470 450 AFSLHNNMVHMRLTPNV------VTYTALADGLC-----KSGEL---ETANELLHEMCRK-GLQLNIY-TY----NSIVN 509 (751)
Q Consensus 450 A~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~~~~~-~~----~~li~ 509 (751)
|+..++.+.. .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 8877766554 1221 01111111111 11122 4555555555543 1111111 11 01122
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcC
Q 004470 510 GLCKAGNILQAVKLMEDMEVAGFH-PDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQP---SVVTFNVLMNGFCMSG 585 (751)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g 585 (751)
.+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 334455666666666665554311 111 11123445556666666666666555432110 1223444444555556
Q ss_pred ChhHHHHHHHHHHHcCC-----------CCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 586 MIEDGEKLLKWMLEKGL-----------KPN---AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGH 651 (751)
Q Consensus 586 ~~~~A~~l~~~~~~~g~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 651 (751)
++++|..+++.+.+... .|+ ...+..+...+...|+.++|++.++++.... +.+...+..++..+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 66666666665554311 011 1122233334444444444444444444421 22333444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 652 CKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
...|++++|++.++++++..+. +...+..++..+...|++++|..+++++++
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444444444444444443322 233444444444444444444444444444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-15 Score=151.44 Aligned_cols=604 Identities=13% Similarity=0.065 Sum_probs=465.3
Q ss_pred ChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchh-------hhHHHHHHHH-HhhhcC
Q 004470 110 DYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASI-------AFTHFVERLI-YTYKDW 181 (751)
Q Consensus 110 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~-------~~~~~~~~l~-~~~~~~ 181 (751)
|-..|.-.++.+...+|.|..+...-+++--..|+++.|+.++.+=+......... ...+....++ ...+.+
T Consensus 266 DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~~ 345 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVRFL 345 (913)
T ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 44678888888888899999999999999899999999999988755433110000 0001112222 234556
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNI 261 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (751)
|.++..|.--+.. ..+...=..+++++++. .|+.+. +-...+ .....+.|+.++.++.+.-+. +...|
T Consensus 346 P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~--iP~sv~---LWKaAV-elE~~~darilL~rAveccp~-s~dLw-- 413 (913)
T KOG0495|consen 346 PTSVRLWLKAADL---ESDTKNKKRVLRKALEH--IPRSVR---LWKAAV-ELEEPEDARILLERAVECCPQ-SMDLW-- 413 (913)
T ss_pred CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh--CCchHH---HHHHHH-hccChHHHHHHHHHHHHhccc-hHHHH--
Confidence 7776666433322 23344445677888776 566542 222222 234556699999999887322 44444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCcccHHHHHHHHH
Q 004470 262 MIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEM----QIKGLKPNPYTYNSVVRLLC 337 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~ 337 (751)
-+|.+..-++.|..++....+. ++.+...|.+-...--..|+.+...+++.+- ...|+..+...|..=...|-
T Consensus 414 --lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 414 --LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 4566778899999999998764 6678888888777777899999988888764 45688888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 338 KTSKVVEAETILREMMNQGIVP--DNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEA 415 (751)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 415 (751)
..|..-.+..+....+..|++- -..+|+.-.+.|.+.+.++-|..+|....+.-+. +...|...+..--..|..++-
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHH
Confidence 9999999999999999888753 3468888889999999999999999999886433 667788777777778999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004470 416 EKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRK 495 (751)
Q Consensus 416 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 495 (751)
..+|+++... ++-....|......+-..|+...|..++..+.+..+. +...|..-+.......+++.|..+|.+....
T Consensus 570 ~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 9999999987 4446667777778888899999999999999988654 7888999999999999999999999998775
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004470 496 GLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFN 575 (751)
Q Consensus 496 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 575 (751)
.|+...|.--+...--.++.++|.+++++..+. ++.-...|..+.+.+.+.++.+.|.+.|..-.+. ++..+..|-
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWl 723 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWL 723 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHH
Confidence 566777776677777789999999999998876 2334567888889999999999999998877665 466677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 576 VLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKAR 655 (751)
Q Consensus 576 ~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 655 (751)
.|...--+.|.+-.|..+++...-++.. +...|...|..-.+.|+.+.|..+..++++. ++.+...|..-|...-+.+
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcc
Confidence 8888888899999999999999887544 7788999999999999999999999998875 4556777877787777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004470 656 NMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCD 735 (751)
Q Consensus 656 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 735 (751)
+-..+...+++ ...|+.....+...+....+++.|++.|+++++.+ +.+-.+|..+...+.+.|.-++-.++++
T Consensus 802 rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 802 RKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred cchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 65554444332 34588888899999999999999999999999975 5566788888888999999888888888
Q ss_pred HHHHcCCC
Q 004470 736 AAIECYLV 743 (751)
Q Consensus 736 ~~~~~~~~ 743 (751)
+.....+.
T Consensus 876 ~c~~~EP~ 883 (913)
T KOG0495|consen 876 KCETAEPT 883 (913)
T ss_pred HHhccCCC
Confidence 87766543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-18 Score=192.12 Aligned_cols=370 Identities=11% Similarity=0.028 Sum_probs=169.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHH
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIH 264 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 264 (751)
..++..++.++.+.|++++|.++++++++. .|+.......++.+....|++++|+..++++.+..+. +.. +..+..
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~ 124 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAY 124 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHH
Confidence 334555555666666666666666665554 3444433334444333456666666666665555333 344 555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc------ccHHHHHHHHH-
Q 004470 265 CLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNP------YTYNSVVRLLC- 337 (751)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~- 337 (751)
.+...|+.++|+..++++.+... .+...+..+...+...|..++|++.++.... .|+. .....+++...
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~ 200 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFM 200 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcc
Confidence 55666666666666666555432 2333444455555555555556555554332 1110 00111111111
Q ss_pred ----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 004470 338 ----KTSKV---VEAETILREMMNQ-GIVPDNV-IY----TTLIDGFCKMGNVAAAYRLFDEMRGLNII-PDLLTYTAII 403 (751)
Q Consensus 338 ----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li 403 (751)
..+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+.
T Consensus 201 ~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la 279 (765)
T PRK10049 201 PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVA 279 (765)
T ss_pred cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHH
Confidence 11122 4455555555432 1111111 10 00012233445555555555555554321 221 111124
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-----------CCC---H
Q 004470 404 CGFCLTGKMVEAEKLFHEMLGRGLEP---DEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRL-----------TPN---V 466 (751)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~ 466 (751)
..+...|++++|+..|+++....... .......+..++...|++++|..+++.+.+..+ .|+ .
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 45555555555555555554331100 112333344445555555555555555554321 111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 467 VTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAY 546 (751)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 546 (751)
..+..+...+...|+.++|.++++++.... +-+...+..+...+...|++++|++.+++..+.. |.+...+...+..+
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~a 437 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHH
Confidence 223344445555555555555555555442 2234455555555555555555555555555443 23344444444455
Q ss_pred HHcCCHHHHHHHHHHHHhC
Q 004470 547 CKSGEMVKAHELLRDMLDK 565 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~ 565 (751)
.+.|++++|..+++++++.
T Consensus 438 l~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHhCCHHHHHHHHHHHHHh
Confidence 5555555555555555543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-16 Score=163.83 Aligned_cols=605 Identities=13% Similarity=0.103 Sum_probs=404.6
Q ss_pred HhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCC
Q 004470 105 MDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSD 184 (751)
Q Consensus 105 ~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (751)
...+++.+.|...+.-+.++.|.+..+|..++.++-..|+...+...---+.-.+ |.+
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~----------------------p~d 206 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN----------------------PKD 206 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC----------------------CCC
Confidence 3467999999999999999999999999999999999998887755333322222 677
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHH----
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYN---- 260 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 260 (751)
...|..++....++|.+++|.-+|.++++. .|+..-+..=-+.++++.|+...|..-|.++....++.|-.-..
T Consensus 207 ~e~W~~ladls~~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 207 YELWKRLADLSEQLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 788999999999999999999999999998 67776555555677778899999999999999886532322222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------
Q 004470 261 IMIHCLCRFGKIKEAHLLLLQMELR-GCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN-------------- 325 (751)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------- 325 (751)
.++..+...++-+.|++.++..... +-..+...++.++..+.+...++.|......+......+|
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 3456677788889999999887652 2224556788899999999999999988888776211111
Q ss_pred --------cccHH----HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 004470 326 --------PYTYN----SVVRLLCKTSKVVEAETILREMMNQG--IVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLN 391 (751)
Q Consensus 326 --------~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 391 (751)
...|. -+.-++......+....+...+.... +.-++..|.-+.++|...|++.+|+.+|..+....
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 11111 12223333344444444444444444 34456678888899999999999999999988776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh--------CCCC
Q 004470 392 IIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVH--------MRLT 463 (751)
Q Consensus 392 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~ 463 (751)
..-+...|-.+..+|...|.+++|.+.|+..+... +.+...-..|...+.+.|+.++|.+.+..+.. .+..
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 66677888899999999999999999999988762 33445556677788889999999998888542 1223
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------------------------------------------
Q 004470 464 PNVVTYTALADGLCKSGELETANELLHEMCRKG----------------------------------------------- 496 (751)
Q Consensus 464 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------------------------------------------- 496 (751)
|+........+.+.+.|+.++=+.+...|+...
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhh
Confidence 334344444555666666554333332222110
Q ss_pred ----------------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHH----HHHHHHHHHHHcCCHH
Q 004470 497 ----------------LQLNI--YTYNSIVNGLCKAGNILQAVKLMEDMEVAGFH-PDTF----TYTTIMDAYCKSGEMV 553 (751)
Q Consensus 497 ----------------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~----~~~~li~~~~~~g~~~ 553 (751)
...+. ..+.-++.++++.+++++|+.+...+.+.... -+.. .-...+.+.+..+++.
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~ 683 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPG 683 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHH
Confidence 00000 12245667888999999999999988764321 1222 2234456677899999
Q ss_pred HHHHHHHHHHhC-CC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 004470 554 KAHELLRDMLDK-GL---QPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIY 629 (751)
Q Consensus 554 ~A~~~~~~~~~~-~~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 629 (751)
.|...++.|+.. +. +--...|+...+.+.+.|+-.--..++..+......-+...+..-.+.+...+.+..|+..+
T Consensus 684 ~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y 763 (895)
T KOG2076|consen 684 DAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEY 763 (895)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHH
Confidence 999999999864 11 11234566566666666654444455544443322222333333344456788899999988
Q ss_pred HHHHHCCCCCCHHHHHH-HHHHHH----------hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 630 KGMCAQGITPDGNTYNI-LLQGHC----------KARNMKEAWFLHKEMVQKG-FNLTTSSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 630 ~~m~~~g~~p~~~~~~~-li~~~~----------~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~ 697 (751)
-+.... .||...++. +..++. ++-..-.++.++.+..+.. ..-...++-.++.+|-..|-..-|..
T Consensus 764 ~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~ 841 (895)
T KOG2076|consen 764 MRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVS 841 (895)
T ss_pred HHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 887774 455333322 222221 1112445666666655532 11235577789999999999999999
Q ss_pred HHHHHHHCCCC-------CC----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 004470 698 LFEEMRRGGLV-------AD----REIYYFFVDINFEEGNTEITLELCDA 736 (751)
Q Consensus 698 ~~~~~~~~~~~-------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 736 (751)
+|++.+..... ++ ...-+.|.-.|..+|+.+.|.+++++
T Consensus 842 YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 842 YYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 99999975210 01 12333455689999999999998765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-16 Score=177.60 Aligned_cols=442 Identities=12% Similarity=0.049 Sum_probs=300.0
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCCh-hhHHHHHHHHHhcCChhH
Q 004470 125 REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDP-HVFDIFFQVLVEARKLNE 203 (751)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 203 (751)
.|.++.+....+.+..+.|+++.|...|.++++.. |.++ .++ .++..+...|+.++
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~----------------------P~~~~av~-dll~l~~~~G~~~~ 86 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG----------------------PLQSGQVD-DWLQIAGWAGRDQE 86 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC----------------------ccchhhHH-HHHHHHHHcCCcHH
Confidence 45566677777778888888888888888888765 4442 344 67777788888888
Q ss_pred HHHHHHHHHhCCCccCHHhHHHHH--HHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 204 ARKLFEKLLNYGLVISVDSCNLFL--SRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQ 281 (751)
Q Consensus 204 A~~~~~~~~~~g~~p~~~~~~~ll--~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (751)
|+..+++.. .|+...+..++ +.++...|++++|+++|+++.+..+. |...+..++..+...++.++|++.+++
T Consensus 87 A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 87 VIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred HHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 888888887 34444444444 55666778888899999888888766 577777788888888999999988888
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004470 282 MELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDN 361 (751)
Q Consensus 282 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 361 (751)
+.... |+...+..++..+...++..+|++.++++.+.. +-+...+..+...+.+.|-...|.++..+-... +.+..
T Consensus 162 l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~ 237 (822)
T PRK14574 162 LAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEH 237 (822)
T ss_pred hcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHH
Confidence 87653 555555444444444666666888888888874 335667778888888888888877666543221 11111
Q ss_pred HHH------HHHHHHH-----HHcCC---HHHHHHHHHHHHhC-CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHH
Q 004470 362 VIY------TTLIDGF-----CKMGN---VAAAYRLFDEMRGL-NIIPDL-LTY----TAIICGFCLTGKMVEAEKLFHE 421 (751)
Q Consensus 362 ~~~------~~li~~~-----~~~g~---~~~A~~~~~~m~~~-~~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~ 421 (751)
..+ ..++..- ....+ .+.|+.-++.+... +..|.. ..| .-.+-++...|++.++++.|+.
T Consensus 238 ~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~ 317 (822)
T PRK14574 238 YRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA 317 (822)
T ss_pred HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 100 1111100 01122 34455555555442 122321 122 2334567788888999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004470 422 MLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRL-----TPNVVTYTALADGLCKSGELETANELLHEMCRKG 496 (751)
Q Consensus 422 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 496 (751)
+...+.+....+-..+.++|...++.++|..++..+..... .++......|..++...+++++|..+++.+.+..
T Consensus 318 l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 318 MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 88877665566777888888888899999999888865431 2244445678888888888888888888888742
Q ss_pred C-----------CCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 497 L-----------QLN--IY-TYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDM 562 (751)
Q Consensus 497 ~-----------~~~--~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 562 (751)
+ .|| -. .+..++..+...|++.+|++.++++.... |-|......+.+.+...|.+.+|++.++..
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 122 12 23445666777888888888888887665 667777778888888888888888888666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 563 LDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEK 600 (751)
Q Consensus 563 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 600 (751)
.... +.+..+....+..+...|++++|..+.+.+.+.
T Consensus 477 ~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 477 ESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred hhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 6542 445666667777777778888888888777765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-16 Score=175.30 Aligned_cols=430 Identities=13% Similarity=0.083 Sum_probs=299.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CcccHHHH--H
Q 004470 259 YNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDV--VSFSTIINGYCYLGELQRVLKLIEEMQIKGLKP-NPYTYNSV--V 333 (751)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l--i 333 (751)
|...| ...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++.. .| +...+..+ .
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA 109 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAA 109 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHH
Confidence 44333 5679999999999999998764 443 234 88888889999999999999988 23 33333444 5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 334 RLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMV 413 (751)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 413 (751)
..+...|++++|.++++++.+.. +-+...+..++..|...++.++|++.++++.... |+...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHH
Confidence 68888899999999999999984 3356777788899999999999999999998864 55555655555555567777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHhcC---------
Q 004470 414 EAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTAL----ADGLCKSG--------- 480 (751)
Q Consensus 414 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g--------- 480 (751)
+|++.++++.+.. +.+...+..+.....+.|-...|.++..+-... + +...+..| +.-..+.+
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 7999999999873 446778888889999999999999877664321 1 11111111 11111111
Q ss_pred ---CHHHHHHHHHHHHHc-CCCCC-HHH----HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 481 ---ELETANELLHEMCRK-GLQLN-IYT----YNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGE 551 (751)
Q Consensus 481 ---~~~~A~~l~~~m~~~-g~~~~-~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 551 (751)
-.+.|+.-++.+... +..|. ... ..-.+-++...|+..++++.++.+...+.+....+-..+.++|...++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 134455555555542 11122 111 123344667788888888888888877755556677788888888888
Q ss_pred HHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-------------CCCHh-hHHHH
Q 004470 552 MVKAHELLRDMLDKG-----LQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL-------------KPNAA-TYNPL 612 (751)
Q Consensus 552 ~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~-------------~p~~~-~~~~l 612 (751)
+++|..+++.+.... .+++......|..+|...+++++|..+++.+.+... .||-. .+..+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 888888888886542 123444456788888888888888888888876311 12222 23344
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKY 692 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 692 (751)
+..+...|++.+|++.++++.... +-|......+.+.+...|.+.+|.+.++.+....+. +..+....+.++...|++
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhH
Confidence 556677788888888888877653 346777777778888888888888888766665433 566666777777777888
Q ss_pred HHHHHHHHHHHHC
Q 004470 693 LEARELFEEMRRG 705 (751)
Q Consensus 693 ~~A~~~~~~~~~~ 705 (751)
++|..+.+...+.
T Consensus 501 ~~A~~~~~~l~~~ 513 (822)
T PRK14574 501 HQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888777764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.8e-15 Score=142.25 Aligned_cols=323 Identities=16% Similarity=0.286 Sum_probs=224.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHH--hCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLS--NTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
-+.|++. ..+|.+.++.-+|+.|...|...+...-..++.-.. ..++-.-.-++.|-.|...|-. +..+|
T Consensus 119 E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW------ 190 (625)
T KOG4422|consen 119 ENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW------ 190 (625)
T ss_pred hhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc------
Confidence 3444443 567999999999999999987776655444443332 1112121223334444433322 22222
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 004470 266 LCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEA 345 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 345 (751)
|.|.+.+ ++-+..- .+..+|.++|.++|+--..+.|.+++.+......+.+..+||.+|.+-.- ...
T Consensus 191 --K~G~vAd---L~~E~~P----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 --KSGAVAD---LLFETLP----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred --ccccHHH---HHHhhcC----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 5565544 3333322 35678999999999999999999999998887778888899988876443 233
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHH
Q 004470 346 ETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAA----AYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVE-AEKLFH 420 (751)
Q Consensus 346 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~ 420 (751)
.+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 7788999998899999999999999999998765 45678889999999999999999999998887744 444554
Q ss_pred HHHH----CCCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCCHHHH
Q 004470 421 EMLG----RGLEP----DEIVYTALIDGYCKAGGMKKAFSLHNNMVHMR----LTPN---VVTYTALADGLCKSGELETA 485 (751)
Q Consensus 421 ~m~~----~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A 485 (751)
++.. +.++| |...|...+..|.+..+.+-|.++..-..... +.|+ ...|..+....|+....+..
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 22332 45667777888888888888888766554321 2222 23455667777777778888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004470 486 NELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAG 531 (751)
Q Consensus 486 ~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 531 (751)
...|+.|+-.-.-|+..+...++.+....|.++-.-++|.++...|
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 8888888777677777777777777777778877777777777665
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-12 Score=130.78 Aligned_cols=573 Identities=11% Similarity=0.041 Sum_probs=438.5
Q ss_pred HHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhh--HHHH-------HH
Q 004470 103 VLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAF--THFV-------ER 173 (751)
Q Consensus 103 ~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~--~~~~-------~~ 173 (751)
.|...-++...|..+..--....|.+-+...-.++ ....+.|..++..+++.....+..=+ .++- ..
T Consensus 293 rLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RV 368 (913)
T KOG0495|consen 293 RLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRV 368 (913)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHH
Confidence 44444445556666555544455555554443332 34567788888888776422111000 0000 01
Q ss_pred HHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC
Q 004470 174 LIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC 253 (751)
Q Consensus 174 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~ 253 (751)
+-......|.+...|- +-+.....++|..++.++.+. -|.....-..+..+ ..++.|.++++++.+. ++
T Consensus 369 lRKALe~iP~sv~LWK----aAVelE~~~darilL~rAvec--cp~s~dLwlAlarL----etYenAkkvLNkaRe~-ip 437 (913)
T KOG0495|consen 369 LRKALEHIPRSVRLWK----AAVELEEPEDARILLERAVEC--CPQSMDLWLALARL----ETYENAKKVLNKAREI-IP 437 (913)
T ss_pred HHHHHHhCCchHHHHH----HHHhccChHHHHHHHHHHHHh--ccchHHHHHHHHHH----HHHHHHHHHHHHHHhh-CC
Confidence 1112334566666554 345667778899999999886 56655444444444 4688999999999887 44
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cc
Q 004470 254 WNTASYNIMIHCLCRFGKIKEAHLLLLQM----ELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN--PY 327 (751)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~ 327 (751)
.+...|.+-...--.+|+.+....+.++- ...|+..+...|-.=...|-..|..-.+..+.......|+.-. ..
T Consensus 438 td~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~ 517 (913)
T KOG0495|consen 438 TDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKS 517 (913)
T ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHh
Confidence 48888988888888899999998887763 4578888999998888888889999999999988888876532 46
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004470 328 TYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFC 407 (751)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 407 (751)
||+.-...|.+.+-++-|..+|...++. .+.+...|...+..--..|..++-..+|++....-++ ....|......+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHH
Confidence 7888889999999999999999999886 3556788888888888889999999999999876433 5667777778888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 408 LTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANE 487 (751)
Q Consensus 408 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 487 (751)
..|++..|..++....+.. +-+...|-.-+..-.....++.|..+|.+.... .|+...|..-+...--.++.++|.+
T Consensus 596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 8999999999999998874 336778888888889999999999999998875 4677777777777777899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 004470 488 LLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGL 567 (751)
Q Consensus 488 l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 567 (751)
++++..+. ++--...|..+.+.+-+.++++.|...|..-.+. ++.....|-.|...=.+.|.+-+|..++++..-.+
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN- 749 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN- 749 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-
Confidence 99999887 3323457778888899999999999988876654 35566778888888888999999999999998776
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 568 QPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNIL 647 (751)
Q Consensus 568 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 647 (751)
+.+...|-..|..-.+.|+.+.|..++.+.++. ++.+...|..-|....+.++-..+.+.+++ ...|+.....+
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllai 823 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAI 823 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHH
Confidence 668899999999999999999999999999886 444566777777766666665555444443 34577888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 648 LQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
...+....++++|.+.|.+.+..++. +..+|..+...+...|.-++-.+++.+....
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 89999999999999999999998765 6788999999999999988888898888764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-15 Score=146.87 Aligned_cols=485 Identities=11% Similarity=0.053 Sum_probs=287.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHH----HH
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTAS----YN 260 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~ 260 (751)
..++..|++-|..+.++.+|+..|+-+++....|+.-....-++.++.+...+.+|+++|+.+...-+..+-.+ .+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 35677789999999999999999999998877888766666666666677889999999998877644444333 34
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc--------HHHH
Q 004470 261 IMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYT--------YNSV 332 (751)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--------~~~l 332 (751)
.+.-.+.+.|++++|+.-|+...+. .||..+--.|+-.+..-|+-++..+.|.+|......||..- -..|
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 4445678899999999999986654 37877655566666677999999999999987643444332 2223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 333 VRLLCKTSKVVEAETILREMMNQGIVPDNVIY----TTLIDGFCKMGNV----AAAYRLFDEMRGLNIIPDLLTYTAIIC 404 (751)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~ 404 (751)
+.--.+... ++.|.+.. +.+..-+ .-+|.- .-.-++ +-.++.+..-....+..+. -. .-..
T Consensus 359 l~eai~nd~-------lk~~ek~~-ka~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~~la~dl-ei-~ka~ 427 (840)
T KOG2003|consen 359 LNEAIKNDH-------LKNMEKEN-KADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHAELAIDL-EI-NKAG 427 (840)
T ss_pred HHHHHhhHH-------HHHHHHhh-hhhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhhhhhhhh-hh-hHHH
Confidence 222222111 11221111 0000000 000000 000000 1111111111000000000 00 1123
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 405 GFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCK--AGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGEL 482 (751)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 482 (751)
.+.++|+++.|+++++-..+..-+.-...-+.|-..+.- ..++..|.++-+..+... .-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 466788888888888777665433333333333333322 235666766666655332 11333333333444556788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 483 ETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDM 562 (751)
Q Consensus 483 ~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 562 (751)
++|.+.+++.....-. -...+..+.-.+-..|++++|++.|-++... +..++.+...+...|....+..+|++++.+.
T Consensus 507 dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 8888888887765221 1112222233456677888888877766442 1345666667777777777777888777776
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004470 563 LDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGN 642 (751)
Q Consensus 563 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 642 (751)
... ++.|+....-|.+.|-+.|+-..|.+.+-+--.- ++-+..+...|...|....-+++|+.+|++..- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 554 5667777777777777777777777765444332 344666666777767777777777777776654 567777
Q ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 643 TYNILLQGH-CKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK 690 (751)
Q Consensus 643 ~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 690 (751)
-|..++..| .+.|++++|.++|+....+- +-|...+.-|++.+...|
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkf-pedldclkflvri~~dlg 708 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKF-PEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhC-ccchHHHHHHHHHhcccc
Confidence 776665443 46677777777777776653 336666666666665554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-13 Score=132.84 Aligned_cols=445 Identities=15% Similarity=0.152 Sum_probs=298.1
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHh--cCCHHH-HHHHHHHHHhcCCCCCHHHHHHHH
Q 004470 222 SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCR--FGKIKE-AHLLLLQMELRGCSPDVVSFSTII 298 (751)
Q Consensus 222 ~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~-A~~~~~~m~~~g~~p~~~~~~~li 298 (751)
+=|.++..+. +|.+..+.-+|+.|...|++.+...-..|.+.-|- ..++-= -++.|-.|...|- .+..+|
T Consensus 118 ~E~nL~kmIS--~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW---- 190 (625)
T KOG4422|consen 118 TENNLLKMIS--SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW---- 190 (625)
T ss_pred chhHHHHHHh--hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc----
Confidence 4466666664 68899999999999998887777766666554332 223222 2344555555443 233344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004470 299 NGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVA 378 (751)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 378 (751)
+.|.+.+ ++-+. .+-+..||..+|.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-.
T Consensus 191 ----K~G~vAd---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~---- 255 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS---- 255 (625)
T ss_pred ----ccccHHH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----
Confidence 4455443 33332 24478899999999999999999999999988877788999999998764322
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH-HHHH
Q 004470 379 AAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVE----AEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKK-AFSL 453 (751)
Q Consensus 379 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~ 453 (751)
...+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ |..+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 227889999999999999999999999999998765 46777888899999999999999999988887643 5555
Q ss_pred HHHHHh----CCCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHHcCCHH
Q 004470 454 HNNMVH----MRLT---P-NVVTYTALADGLCKSGELETANELLHEMCRKG----LQLN---IYTYNSIVNGLCKAGNIL 518 (751)
Q Consensus 454 ~~~~~~----~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~ 518 (751)
..++.. +.++ | +...|..-+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|.....+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 555443 2222 2 34456667777778888888887776554321 2222 234566777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 519 QAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWML 598 (751)
Q Consensus 519 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 598 (751)
.....++.|.-.-+-|+..+...++++..-.|.++-.-+++.+++..|.+-+......+. ..+.
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil----------------~~L~ 479 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEIL----------------MLLA 479 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHH----------------HHHh
Confidence 889999988877677888888888888888888888888888888776443333322222 2333
Q ss_pred HcCCCCCHh---hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---
Q 004470 599 EKGLKPNAA---TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGF--- 672 (751)
Q Consensus 599 ~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--- 672 (751)
...+.|+.. -+.....-+ ...-.+.....-.+|.+... .....+..+-.+.+.|+.++|.+++....+++-
T Consensus 480 ~~k~hp~tp~r~Ql~~~~ak~-aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 480 RDKLHPLTPEREQLQVAFAKC-AADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred cCCCCCCChHHHHHHHHHHHH-HHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 322333322 111111111 11111222222334444444 345556667778899999999999999876542
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 673 -NLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL 707 (751)
Q Consensus 673 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 707 (751)
.|.......+++.-...+....|...++-|...+.
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 23333444666677778889999999999877653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-15 Score=145.08 Aligned_cols=465 Identities=12% Similarity=0.039 Sum_probs=276.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----cccHHHHHHH
Q 004470 261 IMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFS-TIINGYCYLGELQRVLKLIEEMQIKGLKPN----PYTYNSVVRL 335 (751)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~ 335 (751)
.|..-|.......+|+..|+-+.+...-||..... .+.+.+.+..++.+|+++++.....-...+ ....+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 34455556666777888887777766666654332 244567777788888888877665511111 2234444455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC------------CCHHHHHHHH
Q 004470 336 LCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNII------------PDLLTYTAII 403 (751)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------------p~~~~~~~li 403 (751)
+.+.|.++.|+.-|+...+. .|+..+-..|+-++.--|+-++..+.|.+|...-.. |+....+.-|
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 66788888888888887765 577766666666666778888888888887654222 2322222222
Q ss_pred -----HHHHhcC--CHHHHHHHHHHHHHCCCCCCHHH-----H----------------HHHHHHHHHcCChhHHHHHHH
Q 004470 404 -----CGFCLTG--KMVEAEKLFHEMLGRGLEPDEIV-----Y----------------TALIDGYCKAGGMKKAFSLHN 455 (751)
Q Consensus 404 -----~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~-----~----------------~~li~~~~~~g~~~~A~~~~~ 455 (751)
.-.-+.. +.++++-.-.+++.--+.|+-.. . ..-...+.+.|+++.|.++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 1111111 11122211112221112222100 0 011234567777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004470 456 NMVHMRLTPNVVTYTALADGLCK--SGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFH 533 (751)
Q Consensus 456 ~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 533 (751)
-..+..-..-...-+.|-..+.- -.++..|.+.-+...... .-+......-.+.....|++++|.+.+++......
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda- 521 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA- 521 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch-
Confidence 66654322222222322222222 234556666555554331 11222222222333456788888888888775432
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 004470 534 PDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLI 613 (751)
Q Consensus 534 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~ 613 (751)
..+.....+.-.+-+.|++++|++.|-++... +..+......+.+.|-...+...|++++.+.... ++.|..+...|.
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 22222223334566778888888888776543 2346677777777888888888888888776654 455677778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCH
Q 004470 614 KQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF-LKRKKY 692 (751)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~ 692 (751)
..|-+.|+-.+|.+.+-+--+. ++-+..+...|...|....-+++|+.+|+++.- +.|+..-|..++..| .+.|++
T Consensus 600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccH
Confidence 8888888888888776655543 445777777888888888888888888887653 567888887765544 457888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004470 693 LEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDA 736 (751)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 736 (751)
+.|+.+|+..-++ ++.|......|++.....|- .+|.++-++
T Consensus 677 qka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 677 QKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred HHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 8888888887664 56677777777777766664 334444333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.9e-12 Score=124.43 Aligned_cols=457 Identities=12% Similarity=0.077 Sum_probs=320.6
Q ss_pred CCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 233 TCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLK 312 (751)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 312 (751)
.++++..|+.+|++++..+.. +...|-.-+.+-++...+..|..++++....-+..| ..|...+..--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHH
Confidence 346667777777777776544 677777788888888888888888888776422122 345555555566788888999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 004470 313 LIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNI 392 (751)
Q Consensus 313 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 392 (751)
+|++..+. .|+..+|.+.|+.-.+-...+.|..+++...-. .|++.+|.-.+..--+.|++..|..+|+...+.--
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 98888876 788888998888888888888899888887764 68888888888888888888888888887765311
Q ss_pred C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCC---hhHHHH-----HHHHHHhC
Q 004470 393 I--PDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD--EIVYTALIDGYCKAGG---MKKAFS-----LHNNMVHM 460 (751)
Q Consensus 393 ~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~---~~~A~~-----~~~~~~~~ 460 (751)
. -+...+.+...--..+..++.|.-+|+-.++. ++.+ ...|..+...=-+-|+ +++++- -++.+++.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 1 01222333333334567788888888888776 3323 3344433333333444 333332 23444444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-H-HHHHHH--------HHHHHcCCHHHHHHHHHHHHHC
Q 004470 461 RLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNI-Y-TYNSIV--------NGLCKAGNILQAVKLMEDMEVA 530 (751)
Q Consensus 461 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~-~~~~li--------~~~~~~g~~~~A~~~~~~~~~~ 530 (751)
+ +-|-.+|-..++.....|+.+...++++..+.. ++|-. . .|...| -.-....+++.+.+++....+.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4 347788888888888889999999999999876 34422 1 121111 1223567889999999988873
Q ss_pred CCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 004470 531 GFHPDTFTYTTIMDAY----CKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA 606 (751)
Q Consensus 531 ~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~ 606 (751)
+|-...||.-+--.| .++.++..|.+++...+ |..|...+|...|..-.+.++++....++++.++-++. +.
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hh
Confidence 455566665543333 46788999999998877 56888899999999888999999999999999987533 66
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGIT-PDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
.+|......-...|+.+.|..+|+-++.+... .....+...|+.-...|.++.|..+|+++++.. +...+|.+.+.-
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~f 549 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKF 549 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHH
Confidence 78888877778889999999999998875321 123456677777778999999999999999863 244466666544
Q ss_pred HH-----hcC-----------CHHHHHHHHHHHHH
Q 004470 686 FL-----KRK-----------KYLEARELFEEMRR 704 (751)
Q Consensus 686 ~~-----~~g-----------~~~~A~~~~~~~~~ 704 (751)
-. +.| ....|.++|+++..
T Consensus 550 e~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 550 EASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 33 334 56788889988765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.4e-12 Score=123.73 Aligned_cols=471 Identities=11% Similarity=0.104 Sum_probs=352.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004470 257 ASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLL 336 (751)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 336 (751)
..|-.-...--.++++..|..+|++.+... ..+...|-..+..-.+...+..|..++++.+..=...| ..|--.+..-
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymE 151 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHH
Confidence 334444444456788899999999998765 36788888899999999999999999999987622222 2344445555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 337 CKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAE 416 (751)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 416 (751)
-..|++..|.++|+.-.+- .|+..+|++.|..-.+.+.++.|..+|+...-. .|++.+|-....---+.|+..-|.
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 6689999999999999886 899999999999999999999999999998764 489999999888888999999999
Q ss_pred HHHHHHHHC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH------
Q 004470 417 KLFHEMLGR-GL-EPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPN-VVTYTALADGLCKSGELETANE------ 487 (751)
Q Consensus 417 ~~~~~m~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~------ 487 (751)
.+|+..++. |- ..+...+.+....=.++..++.|..+|+-.++.=++.. ...|..+..---+-|+.....+
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999988775 11 11233445555544567788999999998887633211 3455555554455566443332
Q ss_pred --HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HHcCCHHHH
Q 004470 488 --LLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDT-------FTYTTIMDAY---CKSGEMVKA 555 (751)
Q Consensus 488 --l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~---~~~g~~~~A 555 (751)
-++.+++.+ +.|-.+|--.+..-...|+.+...++++++... ++|-. ..|--+=-++ ....+.+.+
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 234455543 447788888888888899999999999999875 45532 1121111111 356899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 556 HELLRDMLDKGLQPSVVTFNVLMNGF----CMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKG 631 (751)
Q Consensus 556 ~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 631 (751)
.++++..++. ++....||.-+--.| .++.++..|.+++...+ |..|...+|...|..-.+.++++....++++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999984 555666665554444 46789999999998877 5588999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 632 MCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKG-FNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710 (751)
Q Consensus 632 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 710 (751)
.++.+ +-|..+|......-...|+.+.|..+|+-+++.. +......|-+.|+.-...|.++.|..+++++++. .+.
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h 539 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQH 539 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--ccc
Confidence 99965 2367778888887788999999999999999863 2223457778888888999999999999999985 344
Q ss_pred HHHHHHHHHHHH-----hcC-----------ChhHHHHHHHHHHHcC
Q 004470 711 REIYYFFVDINF-----EEG-----------NTEITLELCDAAIECY 741 (751)
Q Consensus 711 ~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~ 741 (751)
..+|..++..-. +.| +...|.++|+++....
T Consensus 540 ~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 540 VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 456666554322 445 6778888998886543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-10 Score=117.77 Aligned_cols=586 Identities=15% Similarity=0.132 Sum_probs=372.2
Q ss_pred CChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhH
Q 004470 109 SDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVF 188 (751)
Q Consensus 109 ~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 188 (751)
+.....|.+.+.+.+.+|.|.++....+-.|...|+-++|.......++.+ +.++..|
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d----------------------~~S~vCw 78 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND----------------------LKSHVCW 78 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC----------------------cccchhH
Confidence 345778888888888899999999999999999999999999999888765 5667789
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHh
Q 004470 189 DIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCR 268 (751)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 268 (751)
..++-.+....++++|++.|..+++. .||+...-.=++-+..+.++++-......+..+..+. .-..|...+.++.-
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHL 155 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHH
Confidence 99999999999999999999999987 5776554444444444557777777777777776444 56778888889999
Q ss_pred cCCHHHHHHHHHHHHhcC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCcccH-HHHHHHHHhcC
Q 004470 269 FGKIKEAHLLLLQMELRG-CSPDVVSFSTII------NGYCYLGELQRVLKLIEEMQIKGLKPNPYTY-NSVVRLLCKTS 340 (751)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g 340 (751)
.|++..|..++++..+.. -.|+...|.-.. ....+.|.+++|.+-+..-... + .|...+ ..-...+.+.+
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~ 233 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHh
Confidence 999999999999987643 246666554433 3345678888888887765443 1 133332 34456788999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 004470 341 KVVEAETILREMMNQGIVPDNVIYTTLID-GFCKMGNVAAAY-RLFDEMRGLNIIPDLLTYTAI-ICGFCLTGKMVEAEK 417 (751)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~ 417 (751)
++++|..++..++.. .||...|..... ++.+-.+.-++. .+|....+.-.. ...-..+ ++..-...-.+..-.
T Consensus 234 ~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r--~e~p~Rlplsvl~~eel~~~vdk 309 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR--HECPRRLPLSVLNGEELKEIVDK 309 (700)
T ss_pred hHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc--cccchhccHHHhCcchhHHHHHH
Confidence 999999999999998 577766665544 443444444444 666665543211 1111111 111111222333445
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH----HhCC----------CCCCHHH--HHHHHHHHHhcCC
Q 004470 418 LFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNM----VHMR----------LTPNVVT--YTALADGLCKSGE 481 (751)
Q Consensus 418 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~----------~~~~~~~--~~~li~~~~~~g~ 481 (751)
++..+++.|+++ ++..+...|-.....+-..++.-.+ ...| -+|.... +..++..+-+.|+
T Consensus 310 yL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 310 YLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 666677777664 2333333332211111111111111 1111 1344444 4457788899999
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004470 482 LETANELLHEMCRKGLQLNI-YTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLR 560 (751)
Q Consensus 482 ~~~A~~l~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 560 (751)
++.|...++..+.+ .|+. ..|..=...+...|++++|..++++..+.+ .+|...-.--.....+.++.++|.++..
T Consensus 387 ~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 387 YEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLS 463 (700)
T ss_pred HHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHH
Confidence 99999999999876 4443 355555678889999999999999998876 5676665566777788999999999999
Q ss_pred HHHhCCCCCCHHH--------HHHH--HHHHHhcCChhHHHHHHHHHHHc-----CCCCCHhhH----------HHHHHH
Q 004470 561 DMLDKGLQPSVVT--------FNVL--MNGFCMSGMIEDGEKLLKWMLEK-----GLKPNAATY----------NPLIKQ 615 (751)
Q Consensus 561 ~~~~~~~~p~~~~--------~~~l--i~~~~~~g~~~~A~~l~~~~~~~-----g~~p~~~~~----------~~l~~~ 615 (751)
...+.|. +... |-.+ ..+|.+.|++..|++-|..+... .-+.|-.|| .-|+..
T Consensus 464 kFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~ 541 (700)
T KOG1156|consen 464 KFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEW 541 (700)
T ss_pred Hhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHH
Confidence 8887764 2222 2111 34677888888887766555432 112233333 222222
Q ss_pred HHHcC-------CHHHHHHHHHHHHHCCCCCCHH-----HHHHHH----HHHHhc-CCHHHHHHHHHHHHH---------
Q 004470 616 HCLRN-------DMRTTAKIYKGMCAQGITPDGN-----TYNILL----QGHCKA-RNMKEAWFLHKEMVQ--------- 669 (751)
Q Consensus 616 ~~~~g-------~~~~A~~~~~~m~~~g~~p~~~-----~~~~li----~~~~~~-g~~~~A~~~~~~~~~--------- 669 (751)
.-... -...|+++|-.|.+. |+.. ....+- ....+. .+-.+|.+.-+.+.+
T Consensus 542 ~d~L~~~p~y~~Aa~~Ai~iYl~l~d~---p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~ 618 (700)
T KOG1156|consen 542 EDNLRSSPYYLRAAKGAIEIYLRLHDS---PNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQ 618 (700)
T ss_pred HHhhccChHHHHHHHHHHHHHHHHhcC---cccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 11111 123567777777653 2200 011111 111111 111222222222211
Q ss_pred CCCC--CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 670 KGFN--LTTSSYNALIKGFLKRKK-YLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 670 ~~~~--p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
.|.+ ||.. .++..+.+..+ .++|.+++......+ +.+..+|-.-...|.+.|++.-|.+.++++-..
T Consensus 619 ~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~-~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~ 688 (700)
T KOG1156|consen 619 SGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKG-KEKGETYILSFELYYRKGKFLLALACLNNAEGI 688 (700)
T ss_pred cCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhc-ccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2222 3433 45566666655 477999999888875 677888888889999999999999988887553
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-13 Score=142.77 Aligned_cols=293 Identities=15% Similarity=0.088 Sum_probs=172.6
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004470 443 KAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVK 522 (751)
Q Consensus 443 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 522 (751)
..|+++.|.+.+.+..+.... ....+-.....+.+.|+.+.|.+.+.+..+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 355555555555555443211 1222333344455556666666666655544222121222223455555666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-H---HHHHHHhcCChhHHHHHHHHHH
Q 004470 523 LMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFN-V---LMNGFCMSGMIEDGEKLLKWML 598 (751)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~---li~~~~~~g~~~~A~~l~~~~~ 598 (751)
.++.+.+.. |.+...+..+...+...|++++|.+.+..+.+.+.. +...+. . ...+....+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666666554 445555556666666666666666666666655432 222221 1 1111122222233333444444
Q ss_pred HcCC---CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 599 EKGL---KPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNT---YNILLQGHCKARNMKEAWFLHKEMVQKGF 672 (751)
Q Consensus 599 ~~g~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 672 (751)
+... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.+++..+..+
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 3311 1256667777777778888888888888777743 33321 11122223345778888888888887754
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 673 NLTT--SSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 673 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
. |+ ....++++.+.+.|++++|.+.|++.......|+...+..++..+.+.|+.++|.+++++.+..-
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4 66 77789999999999999999999964443457888888899999999999999999999886643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-11 Score=121.83 Aligned_cols=162 Identities=13% Similarity=0.062 Sum_probs=73.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH
Q 004470 539 YTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCL 618 (751)
Q Consensus 539 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~ 618 (751)
...+.+.|.-.++.++|...|++.++.+ +.....|+.+..-|....+...|.+-++.+++.. +-|-..|-.|.++|..
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEI 410 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHH
Confidence 3334444444444444555554444433 2233344444444444444444554444444432 1244444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 619 RNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAREL 698 (751)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 698 (751)
.+-..-|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|..++..|-. +...+..|++.|-+.++.++|...
T Consensus 411 m~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred hcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHH
Confidence 444444444444444421 113444455555555555555555555554444322 334444455555555555555544
Q ss_pred HHHHHH
Q 004470 699 FEEMRR 704 (751)
Q Consensus 699 ~~~~~~ 704 (751)
|++.++
T Consensus 489 yek~v~ 494 (559)
T KOG1155|consen 489 YEKYVE 494 (559)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.4e-13 Score=139.55 Aligned_cols=292 Identities=11% Similarity=0.057 Sum_probs=172.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHH-HHHHHhcCChhHHHHHHHHH
Q 004470 133 CIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIF-FQVLVEARKLNEARKLFEKL 211 (751)
Q Consensus 133 ~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~ 211 (751)
+.-+.+....|+++.|++.+...-.. +..|.++..+ +.+-.+.|+++.|.+.+.++
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~-----------------------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A 144 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADH-----------------------AEQPVVNYLLAAEAAQQRGDEARANQHLERA 144 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc-----------------------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455555578888888666653322 2234444444 44447888888888888888
Q ss_pred HhCCCccCHHhHH-HHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 004470 212 LNYGLVISVDSCN-LFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPD 290 (751)
Q Consensus 212 ~~~g~~p~~~~~~-~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 290 (751)
.+. .|+..... .....+....|+++.|.+.++++.+.+|. +......+...|.+.|++++|.+++..+.+.+..++
T Consensus 145 ~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~ 221 (398)
T PRK10747 145 AEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE 221 (398)
T ss_pred Hhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence 775 56654333 23355555678888888888888887765 677788888888888888888888888877654322
Q ss_pred HH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 291 VV-------SFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVI 363 (751)
Q Consensus 291 ~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 363 (751)
.. +|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. ++|...
T Consensus 222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l 298 (398)
T PRK10747 222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL 298 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH
Confidence 21 2222233223333444444444444332 2335555566666666666666666666666553 333321
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004470 364 YTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCK 443 (751)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 443 (751)
.++.+.+..++.+++.+..+...+..+. |...+..+...+.+.|++++|.+.|+.+.+. .|+..++..+...+.+
T Consensus 299 --~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 299 --VLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDR 373 (398)
T ss_pred --HHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Confidence 1222333446666666666666555432 4445555566666666666666666666653 4555555566666666
Q ss_pred cCChhHHHHHHHHHH
Q 004470 444 AGGMKKAFSLHNNMV 458 (751)
Q Consensus 444 ~g~~~~A~~~~~~~~ 458 (751)
.|+.++|.+++++..
T Consensus 374 ~g~~~~A~~~~~~~l 388 (398)
T PRK10747 374 LHKPEEAAAMRRDGL 388 (398)
T ss_pred cCCHHHHHHHHHHHH
Confidence 666666666665543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-12 Score=138.38 Aligned_cols=284 Identities=14% Similarity=0.062 Sum_probs=186.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHH
Q 004470 444 AGGMKKAFSLHNNMVHMRLTPNVVT-YTALADGLCKSGELETANELLHEMCRKGLQLNIYTY--NSIVNGLCKAGNILQA 520 (751)
Q Consensus 444 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A 520 (751)
.|+++.|.+.+....+.. +++.. |........+.|+++.|.+.+.++.+. .|+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555544331 11222 222233335666667777666666654 2332211 1224556666777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChhHHHHH
Q 004470 521 VKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSV-------VTFNVLMNGFCMSGMIEDGEKL 593 (751)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~l 593 (751)
...++.+.+.. +.+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777766654 455666666667777777777777777777665433221 1222233333333444555555
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 594 LKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 594 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
++.+.+. .+.+......+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++++..++..+..+.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 5555332 2346777788888888899999999998888874 4555332 334445668999999999999887655
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 674 LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 674 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
|+..+..++..+.+.|++++|.+.|+++.+. .|+...+..++..+.+.|+.++|.+.+++.+..
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7888889999999999999999999999875 688888888999999999999999999988764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-12 Score=128.91 Aligned_cols=220 Identities=15% Similarity=0.098 Sum_probs=149.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004470 477 CKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAH 556 (751)
Q Consensus 477 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 556 (751)
.-.|+.-.|.+.|+..++....++. .|--+...|....+.++..+.|++....+ +.++.+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 3456777777777777776544332 25556666777777777777777777766 556667777777777777778888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004470 557 ELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG 636 (751)
Q Consensus 557 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 636 (751)
.-|++.+... +.+...|-.+.-+..+.++++++...|++..++ ++.-+..|+.....+..++++++|.+.|+..++.
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 7777777653 335566666666666777788888888777776 3334567777777777778888888888777763
Q ss_pred CCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 637 ITPD---------GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 637 ~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.|+ +.+...++-.-.+ +++..|.++++++++.+++ ....|.+|+....++|+.++|+++|++...
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 232 1122222222233 6777777887777776655 566777777777777888888888877665
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-12 Score=129.68 Aligned_cols=219 Identities=13% Similarity=0.113 Sum_probs=137.3
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004470 442 CKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAV 521 (751)
Q Consensus 442 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 521 (751)
.-.|+...|...|+..++....++ ..|-.+...|....+-++..+.|.+..+.+.. |+.+|..-.+...-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 445667777777777776544322 22556666677777777777777777666543 5556666666666666777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 522 KLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKG 601 (751)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g 601 (751)
.-|++..... +.++..|-.+.-+..+.++++++...|++.+++ ++..+..|+.....+...+++++|.+.|+..++.
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 7777776654 445566666666666777777777777777665 4556667777777777777777777777776654
Q ss_pred CCCC-------Hh--hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 602 LKPN-------AA--TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 602 ~~p~-------~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
.|+ .. +-..++ .+--.+++..|..++++.++.+ | ....|..|...-.+.|+.++|+++|++...
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222 11 111111 1123467777777777777643 3 345566777777777777777777776654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=152.59 Aligned_cols=262 Identities=18% Similarity=0.175 Sum_probs=106.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004470 471 ALADGLCKSGELETANELLHEMCRKG-LQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKS 549 (751)
Q Consensus 471 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 549 (751)
.+...+.+.|++++|++++++..... .+.|...|..+....-..++.+.|...++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45677778888888888886654443 23344455555566667788888888888887765 3355566666666 678
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 004470 550 GEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKG-LKPNAATYNPLIKQHCLRNDMRTTAKI 628 (751)
Q Consensus 550 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 628 (751)
+++++|.+++....+. .++...+..++..+...++++++.++++.+.... ..++...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888776654 3466667777888888888888888888877542 245667777888888888999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 629 YKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL 707 (751)
Q Consensus 629 ~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 707 (751)
+++.++. .| |......++..+...|+.+++.++++...+.. +.|+..+..++.+|...|++++|+.++++..+..
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 9988885 45 46777888888888899998888888877654 3366778888999999999999999999988854
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 708 VADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 708 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
+.|+.+...+++++...|+.++|.++..++.+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 668888889999999999999999988887653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-12 Score=138.37 Aligned_cols=301 Identities=11% Similarity=0.012 Sum_probs=145.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 133 CIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLL 212 (751)
Q Consensus 133 ~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 212 (751)
..-+.+....|+++.|++.+.+..+.. |.....+...+.+..+.|+++.|.+.+.++.
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~----------------------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~ 145 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHA----------------------AEPVLNLIKAAEAAQQRGDEARANQHLEEAA 145 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcC----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555556777777777776654432 2223344555666777777777777777766
Q ss_pred hCCCccCHH-hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 004470 213 NYGLVISVD-SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDV 291 (751)
Q Consensus 213 ~~g~~p~~~-~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (751)
+. .|+.. ........+....|+++.|...++++.+.+|. +..++..+...+.+.|++++|.+++..+.+.++. +.
T Consensus 146 ~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~ 221 (409)
T TIGR00540 146 EL--AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DD 221 (409)
T ss_pred Hh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CH
Confidence 54 34432 12222233333556666666666666666544 5556666666666666666666666666665432 22
Q ss_pred HHHHH-HH---HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 292 VSFST-II---NGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTL 367 (751)
Q Consensus 292 ~~~~~-li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 367 (751)
..+.. -. .+....+..+++.+.+..+.+..... .+.+...+..+
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~--------------------------------~~~~~~l~~~~ 269 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH--------------------------------RRHNIALKIAL 269 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH--------------------------------HhCCHHHHHHH
Confidence 22211 01 11111122222222232222221000 00144444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHc
Q 004470 368 IDGFCKMGNVAAAYRLFDEMRGLNIIPDLLT-YTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDE--IVYTALIDGYCKA 444 (751)
Q Consensus 368 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~ 444 (751)
+..+...|+.++|.+++++..+..+...... ...........++.+.+++.++...+. .+-|. ....++...+.+.
T Consensus 270 a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 270 AEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKH 348 (409)
T ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHc
Confidence 4555555555555555555444322211100 011111122234455555555555543 12223 3444555555666
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 445 GGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEM 492 (751)
Q Consensus 445 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 492 (751)
|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 349 ~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 349 GEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666663222222455555556666666666666666666554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-10 Score=115.73 Aligned_cols=309 Identities=14% Similarity=0.084 Sum_probs=159.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCC
Q 004470 369 DGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGL--EPDEIVYTALIDGYCKAGG 446 (751)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~ 446 (751)
.++-.....+++.+-.+...+.|...+...-+....+.....++++|+.+|+++.+... -.|..+|+.++-. +..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh
Confidence 34444445566666666665555543333333333444455666666666666665411 0134455544322 2211
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 447 MKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMED 526 (751)
Q Consensus 447 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 526 (751)
-. +..+.+-...--+-.+.|...+.+.|.-.++.++|...|++..+.+.. ....|..+.+-|....+...|++-++.
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11 111111110000112344555556666666666666666666655433 444556666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 004470 527 MEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA 606 (751)
Q Consensus 527 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~ 606 (751)
+.+.+ +.|-..|-.|.++|.-.+.+.-|+-.|++..+.. +.|...|.+|.++|.+.++.++|++.|......|-. +.
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~ 466 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG 466 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence 66554 5556666666666666666666666666666542 445666666666666666666666666666654422 44
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCA----QGITPD--GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYN 680 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 680 (751)
..+..|...|-+.++.++|...|++-++ .|...+ .....-|...+.+.+++++|.......... .+...--.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak 544 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAK 544 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHH
Confidence 5566666666666666666666655544 222211 122222444455666666666555544432 22333334
Q ss_pred HHHHHHH
Q 004470 681 ALIKGFL 687 (751)
Q Consensus 681 ~l~~~~~ 687 (751)
.|++.+.
T Consensus 545 ~LlReir 551 (559)
T KOG1155|consen 545 ALLREIR 551 (559)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-11 Score=123.12 Aligned_cols=91 Identities=10% Similarity=0.015 Sum_probs=58.0
Q ss_pred HHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004470 220 VDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIIN 299 (751)
Q Consensus 220 ~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 299 (751)
..-+..++.... .+.++..|.-+-+++...+..|+. ---++.+++-.|++++|..+...-.-. ..|..+......
T Consensus 16 ~~~~~~~~r~~l-~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 16 LEKYRRLVRDAL-MQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred HHHHHHHHHHHH-HHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 334444444333 345667777777777666544433 344667777788888887777653222 146677777777
Q ss_pred HHHhcCCHHHHHHHHH
Q 004470 300 GYCYLGELQRVLKLIE 315 (751)
Q Consensus 300 ~~~~~g~~~~A~~~~~ 315 (751)
.+.+..++++|..++.
T Consensus 91 ~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLG 106 (611)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7888888888888777
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.2e-12 Score=117.90 Aligned_cols=292 Identities=14% Similarity=0.079 Sum_probs=215.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCc---CHHHHHHHHHHHHhcCCH
Q 004470 196 VEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICW---NTASYNIMIHCLCRFGKI 272 (751)
Q Consensus 196 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 272 (751)
.-..+.++|.+.|-+|.+. .|..+..+..|+.+++..|..|.|+.+++...+.---+ -..+.-.|..-|++.|-+
T Consensus 46 LLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 4467889999999999986 78999999999999999999999999999887752111 133555688889999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHHHH
Q 004470 273 KEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNP----YTYNSVVRLLCKTSKVVEAETI 348 (751)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~ 348 (751)
|.|+++|..+.+.|. --......|+..|-...+|++|++.-+++.+.|-.+.. ..|..|...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999887543 23456778999999999999999999999887544332 2244555555567888999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 349 LREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLE 428 (751)
Q Consensus 349 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 428 (751)
+.+..+.+ +..+.+-..+.+.+...|+++.|.+.++.+.+.++.--..+...|..+|...|+.++.+..+..+.+...
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~- 280 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT- 280 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 99888874 2344555566778889999999999999998876544456677788899999999999999888887633
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 004470 429 PDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKS---GELETANELLHEMCRK 495 (751)
Q Consensus 429 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~ 495 (751)
....-..+...-....-.+.|...+.+-+.. .|+...+..++..-... |...+.+.+++.|...
T Consensus 281 -g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 -GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred -CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3333334444444445566666666555544 47888888888765443 3355555666666543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.7e-10 Score=114.73 Aligned_cols=453 Identities=15% Similarity=0.113 Sum_probs=305.3
Q ss_pred HhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 004470 140 VAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVIS 219 (751)
Q Consensus 140 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 219 (751)
...+++.....+++.+++.. |..+.+.-+.+-.+...|+.++|.+..+..++. .+.
T Consensus 18 yE~kQYkkgLK~~~~iL~k~----------------------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~ 73 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKF----------------------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLK 73 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhC----------------------CccchhHHhccchhhcccchHHHHHHHHHHhcc--Ccc
Confidence 34566777777777766543 555667777888889999999999999988875 566
Q ss_pred HHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004470 220 VDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIIN 299 (751)
Q Consensus 220 ~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 299 (751)
...|=.+++-+.+...++++|++.|..+...++. |...|.-|.-.-.+.|+++-....-.+..+... .....|..+..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Av 151 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAV 151 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHH
Confidence 6777788999998889999999999999998766 888888887777888888888877777665422 34567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-CCCCcccHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 300 GYCYLGELQRVLKLIEEMQIKG-LKPNPYTYNSVV------RLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFC 372 (751)
Q Consensus 300 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 372 (751)
++.-.|++..|..++++..+.. -.|+...|.-.. ....+.|.+++|.+.+..-... +......-..-...+.
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~ 230 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLM 230 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHH
Confidence 8899999999999999998764 245555554332 3455688888888877765543 2212223345567788
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHH-HHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCh
Q 004470 373 KMGNVAAAYRLFDEMRGLNIIPDLLTYTAI-ICGFCLTGKMVEAE-KLFHEMLGR---GLEPDEIVYTALIDGYCKAGGM 447 (751)
Q Consensus 373 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~ 447 (751)
+.|++++|..++..+..++ ||...|... ..++.+-.+.-+++ .+|....+. ...|-....+.+ ....-.
T Consensus 231 kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl----~~eel~ 304 (700)
T KOG1156|consen 231 KLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL----NGEELK 304 (700)
T ss_pred HHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh----CcchhH
Confidence 9999999999999999876 565555544 45554444444454 666665543 111111111111 112223
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC----------CCCCH--HHHHHHHHHH
Q 004470 448 KKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCR----KG----------LQLNI--YTYNSIVNGL 511 (751)
Q Consensus 448 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g----------~~~~~--~~~~~li~~~ 511 (751)
+..-.++..+.+.|+++ ++..+...|-.....+-..++.-.+.. .| -+|.. .++..++..+
T Consensus 305 ~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 305 EIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred HHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH
Confidence 34445666677777653 233333333222222211112111111 11 13444 3556778889
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 004470 512 CKAGNILQAVKLMEDMEVAGFHPD-TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDG 590 (751)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 590 (751)
-+.|+++.|...++..... .|+ +..|..-.+.+...|++++|..++++..+.+ .+|...-.--+.-..++++.++|
T Consensus 382 D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred HHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHH
Confidence 9999999999999999875 565 4566677788999999999999999999875 55665555566667789999999
Q ss_pred HHHHHHHHHcCCCCCHhhH--------HHH--HHHHHHcCCHHHHHHHHHHHH
Q 004470 591 EKLLKWMLEKGLKPNAATY--------NPL--IKQHCLRNDMRTTAKIYKGMC 633 (751)
Q Consensus 591 ~~l~~~~~~~g~~p~~~~~--------~~l--~~~~~~~g~~~~A~~~~~~m~ 633 (751)
.++.......|. +...+ -.+ ..+|.+.|++..|++-|..+.
T Consensus 459 ~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 459 EEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 999999988764 32222 111 345777777777776555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=145.18 Aligned_cols=261 Identities=16% Similarity=0.128 Sum_probs=93.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 004470 436 ALIDGYCKAGGMKKAFSLHNNMVHMR-LTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKA 514 (751)
Q Consensus 436 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~ 514 (751)
.+...+.+.|++++|++++++..... .+.+...|..+.......++.+.|.+.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34556666777777777775443332 2234444555555666667777777777777665433 44555555555 567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 004470 515 GNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKG-LQPSVVTFNVLMNGFCMSGMIEDGEKL 593 (751)
Q Consensus 515 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l 593 (751)
+++++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777665544 3455566667777777777777777777765432 245666677777777777777777777
Q ss_pred HHHHHHcCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 594 LKWMLEKGLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGF 672 (751)
Q Consensus 594 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 672 (751)
+++.++. .| |......++..+...|+.+++.++++...+.. +.|+..+..+..+|...|+.++|+..+++.....+
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 7777775 33 45666777777777777777777777766642 34555666777778888888888888888777644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 673 NLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 673 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
. |+.+...+++++...|+.++|..+.+++.+
T Consensus 246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T--HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 4 777777888888888888888877776654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-10 Score=116.85 Aligned_cols=503 Identities=11% Similarity=0.021 Sum_probs=313.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHH
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIH 264 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 264 (751)
..-+..+.+-+..+.++.-|+-+-+++...+-.|+..-+ +...++ -.|+++.|......-.-. .-|..+......
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~--~aq~l~-~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYW--LAQVLY-LGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHH--HHHHHH-hhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 345666777888899999999999999877666665433 334443 457777777666544222 227778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHH
Q 004470 265 CLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVE 344 (751)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 344 (751)
++.+..++++|..++..-.. .-+...|-.-=. ...-..+.+. ++. +.......+-.-...|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHH
Confidence 99999999999998874311 111111110000 0000111111 010 011112222222344555667788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHH-HhcCCHHHHHHHH
Q 004470 345 AETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNII----PDLLTYTAIICGF-CLTGKMVEAEKLF 419 (751)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~li~~~-~~~g~~~~A~~~~ 419 (751)
|...+.+.+.. |...+..+...-.. .+-.+.+.++.+...... -+......+.... ++.-+- +....-
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~ 232 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE-ESLTRN 232 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc-cccccC
Confidence 88888777765 33333332221111 112222223333221110 0111111111111 111000 000000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004470 420 HEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQL 499 (751)
Q Consensus 420 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 499 (751)
.+..-.+..-+........+-+...+++.+..++.+...+.. +++...+..-|.++...|+..+-..+=.++++.- +-
T Consensus 233 ~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~ 310 (611)
T KOG1173|consen 233 EDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PS 310 (611)
T ss_pred chhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CC
Confidence 001111234455666667777788889999999999888764 3466667777778888888888888888888763 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMN 579 (751)
Q Consensus 500 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 579 (751)
.+.+|-++.--|...|+..+|.+.|.+....+ +.=...|-.+..+|+-.|..|+|...+..+.+. ++-...-+-.+.-
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGM 388 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHH
Confidence 67788888888888899999999998887654 334567888888888899999998888877653 2222233344455
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHh
Q 004470 580 GFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ--GITP----DGNTYNILLQGHCK 653 (751)
Q Consensus 580 ~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~li~~~~~ 653 (751)
-|.+.++.+-|.+.|.+..... +.|+..++-+.-.....+.+.+|..+|+..+.. .+.+ -..+++.|.+.|.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 6778889999999998887652 336677777777777888899999998887731 1111 23457888999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 654 ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 654 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
.+.+++|+..+++.+...+. +..++.+++-.|...|+++.|++.|.+.+- +.||..+...++
T Consensus 468 l~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL 529 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 99999999999999988655 888999999999999999999999999886 466665544444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-11 Score=116.49 Aligned_cols=299 Identities=13% Similarity=0.054 Sum_probs=179.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 409 TGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANEL 488 (751)
Q Consensus 409 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 488 (751)
.|++.+|+++..+..+.+-. ....|..-+.+--..|+.+.+-.++.++.+.-..++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666655544322 23334444455555566666666666655543344455555555555556666666655
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 004470 489 LHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQ 568 (751)
Q Consensus 489 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (751)
++++.+.+.. ++........+|.+.|++.+...++..+.+.|.-.+...-..
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 5555555433 444555555555555555555555555555553322211000
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 569 PSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILL 648 (751)
Q Consensus 569 p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 648 (751)
...+|+.+++-....+..+.-...|+..-.+ .+-++..-.+++.-+...|+.++|.++.++..+.+..|+.. ..
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~ 301 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RL 301 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HH
Confidence 0123444444333333333333344443332 34455566677777778888888888888888776555521 12
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 004470 649 QGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTE 728 (751)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 728 (751)
-.+.+-++...-++..++.....+. ++..+.+|+..|.+.+.|.+|.+.|+.+++. .|+..+|..+++++.+.|+.+
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 3345667777777777777766433 6788888888888888888888888877764 688888888888888888888
Q ss_pred HHHHHHHHHHHcCCCCC
Q 004470 729 ITLELCDAAIECYLVGK 745 (751)
Q Consensus 729 ~A~~~~~~~~~~~~~~~ 745 (751)
+|.+..++.+-....|.
T Consensus 379 ~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 379 EAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 88888888875554444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-12 Score=132.79 Aligned_cols=284 Identities=12% Similarity=0.003 Sum_probs=155.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 411 KMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRL--TPNVVTYTALADGLCKSGELETANEL 488 (751)
Q Consensus 411 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l 488 (751)
+..+|+..|..+... ..-...+...+..+|...+++++|.++|+.+.+..+ .-+..+|.+.+--+-+.- +---+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v---~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV---ALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH---HHHHH
Confidence 567777777774444 333346666777788888888888888877776531 125556666654432211 11122
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 004470 489 LHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQ 568 (751)
Q Consensus 489 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (751)
-+++.+.. +-.+.+|.++.++|.-+++.+.|++.|++....+ +....+|+.+..-+....++|.|...|+..+... +
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 23333332 2355667777777777777777777777666553 3356666666666666666666666666665432 1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 569 PSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILL 648 (751)
Q Consensus 569 p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 648 (751)
-+..+|..+.-.|.+.++++.|+-.|+++.+.+.. +.+....+...+-+.|+.++|+++++++...+. -|+..--..+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHH
Confidence 23334444555566666666666666666654322 334444444555555555555555555554321 1333322334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 649 QGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
..+...+++++|+..++++++.-++ +...+..++..|-+.|+.+.|+..|.-|.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 4444455555555555555544222 344455555555555555555555555554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-09 Score=111.86 Aligned_cols=495 Identities=12% Similarity=0.064 Sum_probs=315.7
Q ss_pred HHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 004470 228 SRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIH---CLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYL 304 (751)
Q Consensus 228 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 304 (751)
..+++..++..++...|......+...++.++-.+-. .|+..|+.+++ .++..+.+ -..|....+.+++..
T Consensus 234 ~~Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~e-s~i~Re~~~d~ilsl---- 307 (799)
T KOG4162|consen 234 PILWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEE-SLIPRENIEDAILSL---- 307 (799)
T ss_pred HHHhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHh-hccccccHHHHHHHH----
Confidence 4555566777888888888877777666666655543 34556677666 22222222 122222222211111
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004470 305 GELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLF 384 (751)
Q Consensus 305 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 384 (751)
.-.+.++....+.-|...|..|.-++...|+++.+.+.|++....- .-....|+.+...|...|.-..|..++
T Consensus 308 ------m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll 380 (799)
T KOG4162|consen 308 ------MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLL 380 (799)
T ss_pred ------HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHH
Confidence 1122223333344577778888888889999999999999887653 335667888889999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHcC-----------Ch
Q 004470 385 DEMRGLNIIPDLLTYTAIICGFC--LTGKMVEAEKLFHEMLGR--GL--EPDEIVYTALIDGYCKAG-----------GM 447 (751)
Q Consensus 385 ~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~--~~--~p~~~~~~~li~~~~~~g-----------~~ 447 (751)
++-......|+..+--.++...| +.|.++++++.-.+.+.. +. ......|-.+.-+|...- ..
T Consensus 381 ~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h 460 (799)
T KOG4162|consen 381 RESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALH 460 (799)
T ss_pred HhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHH
Confidence 88776654454444444443333 447788888877777662 11 112344444444443211 24
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 448 KKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDM 527 (751)
Q Consensus 448 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 527 (751)
.++.+.+++..+.+.. |+.+...+.--|+..++++.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+..
T Consensus 461 ~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 5677788888776543 434444444557778899999999999998877778889999999999999999999999887
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----------------------------CCCCCHHHHHHHHH
Q 004470 528 EVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDK----------------------------GLQPSVVTFNVLMN 579 (751)
Q Consensus 528 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------------~~~p~~~~~~~li~ 579 (751)
.+.- ..|......-+..-..-++.++|......+... .......++..+..
T Consensus 540 l~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 540 LEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 6531 111111111112222244444444433332210 00111222322222
Q ss_pred HHHhcCChhHHHHHHHHHHHcC--CCCCH------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 580 GFCMSGMIEDGEKLLKWMLEKG--LKPNA------ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGH 651 (751)
Q Consensus 580 ~~~~~g~~~~A~~l~~~~~~~g--~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 651 (751)
-....+ +.+..-.. +...- ..|+. ..|......+.+.++.++|.-.+.+..... +-....|......+
T Consensus 619 l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 619 LVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLL 694 (799)
T ss_pred HHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHH
Confidence 111110 00000000 11111 12231 234455666788899999998888887642 33566788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 004470 652 CKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARE--LFEEMRRGGLVADREIYYFFVDINFEEGNTEI 729 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 729 (751)
...|.+++|.+.|..+...++. ++.+...++..+.+.|+..-|.. ++..+++.+ +.+++.|..++..+.+.|+.+.
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHH
Confidence 9999999999999999988765 67789999999999998877777 999999987 7799999999999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 004470 730 TLELCDAAIECYLV 743 (751)
Q Consensus 730 A~~~~~~~~~~~~~ 743 (751)
|.+-|+.+++....
T Consensus 773 Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 773 AAECFQAALQLEES 786 (799)
T ss_pred HHHHHHHHHhhccC
Confidence 99999999887644
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-11 Score=113.15 Aligned_cols=306 Identities=13% Similarity=0.093 Sum_probs=187.7
Q ss_pred CCchhHHHHHHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHH
Q 004470 94 KFRSDHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVER 173 (751)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 173 (751)
+++.+.|-.+-.-+.++|+.|.+.|--+...++.+++++..++++.-..|..+.|+++...++..++....
T Consensus 34 ~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~--------- 104 (389)
T COG2956 34 RLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFE--------- 104 (389)
T ss_pred hccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchH---------
Confidence 35567777777777899999999999999999999999999999999999999999999999887632111
Q ss_pred HHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC
Q 004470 174 LIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC 253 (751)
Q Consensus 174 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~ 253 (751)
....+...|++-|...|-+|.|.++|..+...|.. -...... |-.++....+|++|+.+-++....+..
T Consensus 105 ---------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~Alqq-Ll~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 105 ---------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQ-LLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred ---------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 11235677999999999999999999999875311 1112222 333444567777777777777666554
Q ss_pred cCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 004470 254 WNT----ASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTY 329 (751)
Q Consensus 254 ~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 329 (751)
+.. .-|..|...+....++++|..++.+..+.+. ..+..--.+.+.....|+++.|.+.++...+.+..--..+.
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 332 2344455555556666666666666655432 12333334445566666666666666666665433334445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 004470 330 NSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCL- 408 (751)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~- 408 (751)
..|..+|...|+.++....+..+.+.. +....-..+.+.-....-.+.|...+.+-..+ .|+...+..+|.....
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhcc
Confidence 556666666666666666666665542 23333333333333333344444443333332 2566666666554432
Q ss_pred --cCCHHHHHHHHHHHHH
Q 004470 409 --TGKMVEAEKLFHEMLG 424 (751)
Q Consensus 409 --~g~~~~A~~~~~~m~~ 424 (751)
.|...+.+.+++.|+.
T Consensus 329 aeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 329 AEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccccchhhhHHHHHHHHH
Confidence 2334444445555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-12 Score=131.56 Aligned_cols=289 Identities=10% Similarity=0.090 Sum_probs=174.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004470 446 GMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGL--QLNIYTYNSIVNGLCKAGNILQAVKL 523 (751)
Q Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~ 523 (751)
+..+|...|....... .-...+...+..+|...+++++|.++|+.+.+... .-+...|.+.+-.+-+ .-+--.+
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence 3456666666644332 22334555666777777777777777777765421 1144556655543322 1111122
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 524 MEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLK 603 (751)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~ 603 (751)
-+++.... +..+.+|-++..+|.-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|.|...|+..+....+
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 22333332 4556777777777777777777777777776653 225666777766666777777777777766543111
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 604 PNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNAL 682 (751)
Q Consensus 604 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 682 (751)
+.-.|-.+.-.|.++++++.|.-.|+++++. .| +.+....+...+-+.|+.|+|+.+++++...+++ |+..--..
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 2233444555677777777777777777663 33 4555556666667777777777777777766655 55555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 683 IKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLVGK 745 (751)
Q Consensus 683 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (751)
+..+...+++++|+..++++.+. .+.+..++..++..|.+.|+.+.|+..|.=|.+....+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 66666677777777777777664 244556666667777777777777777776666655543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.5e-10 Score=106.22 Aligned_cols=491 Identities=12% Similarity=0.074 Sum_probs=235.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCC
Q 004470 192 FQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGK 271 (751)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 271 (751)
..-+....++..|+.+++.-...+ .-.....+.-++-+....|++++|..+|..+.... .++...+--|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLD-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccc-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 344556666777777666555433 11222445555555556666666666666655532 2344444445555555566
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 272 IKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILRE 351 (751)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 351 (751)
+.+|..+-....+ +.-.-..|++.--+.++-++-..+.+.+... ...--+|.......-.+.+|++++..
T Consensus 107 Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6666655433221 2222233444444556655555555544332 12223333343444456666666666
Q ss_pred HHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 352 MMNQGIVPDNVIYTTLI-DGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD 430 (751)
Q Consensus 352 m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 430 (751)
.+.. .|+-...|..+ -+|.|..-++-+.++++-..+.- ..+....|.......+.=+-..|++-..++.+.+-..
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 6654 24444444332 34455555566666655554432 1133344444433333222222333333333332111
Q ss_pred HHHHHHHHHHHHHcC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004470 431 EIVYTALIDGYCKAG-----GMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYN 505 (751)
Q Consensus 431 ~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~ 505 (751)
| ..+.-.++.+ .-+.|++++--+.+. -+..-..|+-.|.+.+++.+|..+.+++.-. .|-.....
T Consensus 253 ---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilK 322 (557)
T KOG3785|consen 253 ---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILK 322 (557)
T ss_pred ---c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHH
Confidence 1 1122223322 335555555544432 1223334555566777777777666554311 12111111
Q ss_pred HHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004470 506 SIVNGLCKAG-------NILQAVKLMEDMEVAGFHPDT-FTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVL 577 (751)
Q Consensus 506 ~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 577 (751)
.+. +...| ...-|.+.|...-+.+..-|. .--.++...+.-..++|+.+-.++.+..-=...|... -.+
T Consensus 323 gvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~ 399 (557)
T KOG3785|consen 323 GVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNL 399 (557)
T ss_pred HHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHH
Confidence 111 22222 233444445444333332222 2234455555556667777777766655422223333 345
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcC
Q 004470 578 MNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYN-PLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNT-YNILLQGHCKAR 655 (751)
Q Consensus 578 i~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g 655 (751)
.++++..|++.+|+++|-......++ |..+|. .|.++|.+.++++.|++++-++-. +.+..+ ...+...|.+++
T Consensus 400 AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 400 AQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHH
Confidence 66777777777777777655543333 344443 344566777777777666554432 223333 233345566777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 004470 656 NMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVA-DREIYYFFVDINFEEGN 726 (751)
Q Consensus 656 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 726 (751)
.+=-|-+.|+.+... .|++.-| .|+.....-+|..+....-.| .......++..+...++
T Consensus 476 eFyyaaKAFd~lE~l--DP~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 476 EFYYAAKAFDELEIL--DPTPENW---------EGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred HHHHHHHhhhHHHcc--CCCcccc---------CCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCC
Confidence 776666777666554 3444444 344444455555555432222 22344455555555544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-07 Score=98.58 Aligned_cols=534 Identities=11% Similarity=0.146 Sum_probs=327.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYG-LVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYN 260 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (751)
..-|.+|..-...+.++|++..-...|++++..= +.-....+...+.-+- ..+-.+-+..+|++.+.. ++..-+
T Consensus 99 HkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~-~~~lPets~rvyrRYLk~----~P~~~e 173 (835)
T KOG2047|consen 99 HKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVE-SHGLPETSIRVYRRYLKV----APEARE 173 (835)
T ss_pred hcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHH-hCCChHHHHHHHHHHHhc----CHHHHH
Confidence 3457788888888889999988888898887651 1122334555555443 567778888999888877 444567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCC--cccH
Q 004470 261 IMIHCLCRFGKIKEAHLLLLQMELRG------CSPDVVSFSTIINGYCYLGELQ---RVLKLIEEMQIKGLKPN--PYTY 329 (751)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~--~~~~ 329 (751)
.-|..+++.++.++|.+.+....... .+.+-..|..+-+...+.-+.- ...++++.+... -+| ...|
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw 251 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLW 251 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHH
Confidence 77888888999999988887765321 1234445555544444432221 122233333222 233 2457
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------C------CHHHHHHHHHHH
Q 004470 330 NSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKM----------------G------NVAAAYRLFDEM 387 (751)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~m 387 (751)
++|.+.|.+.|.+++|..++++.+.. ...+.-|..+-+.|+.- | +++-.+.-|+.+
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~l 329 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESL 329 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHH
Confidence 88888888888888888888887765 23444444444444321 1 122233334444
Q ss_pred HhCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCChhHH
Q 004470 388 RGLNI-----------IPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD------EIVYTALIDGYCKAGGMKKA 450 (751)
Q Consensus 388 ~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~A 450 (751)
..+.. .-++..|..-+ -+..|+..+-...|.++... +.|. ...|..+.+.|-..|+++.|
T Consensus 330 m~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 330 MNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 33211 01233333322 23457778888888888765 3332 24678888999999999999
Q ss_pred HHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------C------CHHHHHHHHHH
Q 004470 451 FSLHNNMVHMRLTPN---VVTYTALADGLCKSGELETANELLHEMCRKGLQ-----------L------NIYTYNSIVNG 510 (751)
Q Consensus 451 ~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------~------~~~~~~~li~~ 510 (751)
..+|++..+...+-- ..+|-.-...-.+..+++.|+++++......-. + +...|...++.
T Consensus 407 Rvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 407 RVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 999999887543311 234555555666778888999888876543111 1 22345566666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCC
Q 004470 511 LCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSV-VTFNVLMNGFCM---SGM 586 (751)
Q Consensus 511 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~---~g~ 586 (751)
.-..|-++....+++.+....+-......| ....+-...-++++.+++++-+..=..|++ ..|+..+.-+.+ ...
T Consensus 487 eEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 667788888888888887765422222222 222234555678888888776654334444 356666655543 237
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHH--HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 004470 587 IEDGEKLLKWMLEKGLKPNAATYNPLI--KQHCLRNDMRTTAKIYKGMCAQGITPD--GNTYNILLQGHCKARNMKEAWF 662 (751)
Q Consensus 587 ~~~A~~l~~~~~~~g~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~ 662 (751)
++.|..+|++.++ |++|...-+--|+ ..--..|-...|..+++++... +.+. ...|++.|.--...=-+..-..
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~ 643 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTRE 643 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHH
Confidence 8899999999998 6666543322222 2223557788889999887653 3433 3457776654444333455567
Q ss_pred HHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 004470 663 LHKEMVQKGFNLTTS---SYNALIKGFLKRKKYLEARELFEEMRRGGLVA--DREIYYFFVDINFEEGNTEITLEL 733 (751)
Q Consensus 663 ~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 733 (751)
+|+++++. -|+.. ......+.-++.|..+.|..++....+. ++| +...|...-..=.+.|+-+...+.
T Consensus 644 iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 644 IYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 77777775 23332 3344555566788899999888887774 234 567777777667778884444433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-10 Score=123.79 Aligned_cols=517 Identities=12% Similarity=0.073 Sum_probs=244.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
.+|-.||.-|+..|+.+.|- +|.-|.......+...++.+..+-. ..++.+.+. .|-..+|..|..+
T Consensus 26 vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~-~And~Enpk-----------ep~aDtyt~Ll~a 92 (1088)
T KOG4318|consen 26 VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK-EANDAENPK-----------EPLADTYTNLLKA 92 (1088)
T ss_pred hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc-ccccccCCC-----------CCchhHHHHHHHH
Confidence 56777788888888777777 7776655444444444444443332 334444332 4566778888888
Q ss_pred HHhcCCHHHHHHHHHH-HH-------hcCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 266 LCRFGKIKEAHLLLLQ-ME-------LRGCSPDVVSF--------------STIINGYCYLGELQRVLKLIEEMQIKGLK 323 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 323 (751)
|.+.|++.- ++..++ |. ..|+.--..-+ ...+....-.|-++.+++++..+......
T Consensus 93 yr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~ 171 (1088)
T KOG4318|consen 93 YRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWN 171 (1088)
T ss_pred HHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccccc
Confidence 888887654 222222 21 11221001100 11222233344445555554443221100
Q ss_pred CCcccHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004470 324 PNPYTYNSVVRLLCKTS-KVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAI 402 (751)
Q Consensus 324 p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 402 (751)
. +....++-+.... .+++-..+.+...+ .|+..+|..+++.-.-.|+++.|..++.+|.+.|...+..-|-.|
T Consensus 172 -~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 172 -A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred -c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 0 1111122222222 12222222222221 477888888888888888888888888888888877666655565
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 403 ICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGEL 482 (751)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 482 (751)
+.+ .++..-++.+++-|.+.|+.|+..|+..-+-.+.++|....+ +.| .+....+++-...-.-.|
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~-sq~~hg~tAavrsaa~rg-- 311 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEG-SQLAHGFTAAVRSAACRG-- 311 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccc-cchhhhhhHHHHHHHhcc--
Confidence 544 677777777778888888888888877666666554442111 111 112222222222222222
Q ss_pred HHHHHHHH------------HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH
Q 004470 483 ETANELLH------------EMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAG---FHPDTFTYTTIMDAYC 547 (751)
Q Consensus 483 ~~A~~l~~------------~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~ 547 (751)
..|.+.++ +..-.|.......|...+. ...+|+-++..++...+..-- -..++..|..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 11222211 1111233333344433333 333677777777776664311 1223445555555444
Q ss_pred HcCCHHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCC-------CHhhHHHHHH
Q 004470 548 KSGEMVKAHELLR--DMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLE----KGLKP-------NAATYNPLIK 614 (751)
Q Consensus 548 ~~g~~~~A~~~~~--~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~----~g~~p-------~~~~~~~l~~ 614 (751)
+.-+..-...++. +.+... -+...--.++....+. +...+.+-+..+.. ....| -...-+.++.
T Consensus 391 rr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 3222111111111 111100 0000000111111110 11111111111110 00111 1122334455
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCH
Q 004470 615 QHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKG--FNLTTSSYNALIKGFLKRKKY 692 (751)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 692 (751)
.++..-+..++...-++....- -+ ..|..||+-++...+.+.|..+.++..... +..|..-+..+.+.+.+.+..
T Consensus 468 ~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence 5555555555554433333211 11 456677777777777777777776665432 223444566667777777777
Q ss_pred HHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 693 LEARELFEEMRRGGL-VA-DREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 693 ~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
.++.++++++.+.-. .| -..+...+.+.....|+.+.-.++.+-+...|+.
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 777777777665211 11 1344445556666667766666666665555543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-10 Score=109.85 Aligned_cols=285 Identities=12% Similarity=0.066 Sum_probs=146.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 004470 375 GNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLH 454 (751)
Q Consensus 375 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 454 (751)
|++.+|.++..+-.+.+..| ...|..-..+.-+.|+.+.+-.++.+..+..-.++...+-+........|+...|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44444444444433333221 22333333344444444444444444443322223333333444444444444444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 455 NNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNI-------YTYNSIVNGLCKAGNILQAVKLMEDM 527 (751)
Q Consensus 455 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~ 527 (751)
.++.+.++. ++........+|.+.|++.....++..|.+.|.--+. .+|..+++-....+..+.-...|++.
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 444444332 3444444445555555555555555555544433222 34455555544444555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh
Q 004470 528 EVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAA 607 (751)
Q Consensus 528 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~ 607 (751)
...- +.++..-.+++.-+...|+.++|.++.++..+++..|+ ...+ -.+.+-++.+.-++..++..+. .+.++.
T Consensus 256 pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 256 PRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred cHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 4331 44555556666677777777777777777777655544 1111 2234455555555555555543 122345
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
.+.+|...|.+.+.+.+|.+.|+..++. .|+..+|+.+.+++.+.|+..+|.+..++...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5666666666667777777777666653 46666666677777777777776666666554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-10 Score=123.18 Aligned_cols=93 Identities=13% Similarity=-0.071 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG--LVADREIYYFFVDIN 721 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~ 721 (751)
-+.++..++..-+..+++..-++....- - +..|..|++-++...+.++|..+.++..... +..|...+..+.+.+
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~l-f--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDLL-F--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 3455566666666666665544443321 1 2678999999999999999999999986532 344666788899999
Q ss_pred HhcCChhHHHHHHHHHHH
Q 004470 722 FEEGNTEITLELCDAAIE 739 (751)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~ 739 (751)
.+.+....+.++++++-+
T Consensus 539 ~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKS 556 (1088)
T ss_pred HHhHHHHHHHHHHhhhhH
Confidence 999999999999888765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-07 Score=97.93 Aligned_cols=491 Identities=12% Similarity=0.113 Sum_probs=309.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCC------CcCHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGI------CWNTASY 259 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~ 259 (751)
.+|+..++-.-..|.++-++.+|++-++. .|.. .+-.+.-|. ..+++++|.+.+...+.... +.+-..|
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie~L~-~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw 213 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIEYLA-KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLW 213 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHHHHH-hccchHHHHHHHHHhcCchhhhhhcccchhhHH
Confidence 46777777777778888888888888775 3443 344555554 56778888887776653311 1244455
Q ss_pred HHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 004470 260 NIMIHCLCRFGKIK---EAHLLLLQMELRGCSPDV--VSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVR 334 (751)
Q Consensus 260 ~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 334 (751)
..+-+...+.-+.- ....+++.+..+ -+|. ..|.+|.+-|.+.|.+++|..++++.... ...+..|+.+.+
T Consensus 214 ~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd 289 (835)
T KOG2047|consen 214 LELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFD 289 (835)
T ss_pred HHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHH
Confidence 55544444332211 222333333332 2332 46777888888888888888888877665 234455555555
Q ss_pred HHHhcCC----------------------HHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHHcCCHHHHH
Q 004470 335 LLCKTSK----------------------VVEAETILREMMNQGI-----------VPDNVIYTTLIDGFCKMGNVAAAY 381 (751)
Q Consensus 335 ~~~~~g~----------------------~~~A~~~~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~A~ 381 (751)
+|..... ++-...-|+.+...+. +.++..|..-+. +..|+..+-.
T Consensus 290 ~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i 367 (835)
T KOG2047|consen 290 AYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQI 367 (835)
T ss_pred HHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHH
Confidence 5543211 1222233333333210 112222222222 2356677777
Q ss_pred HHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCChhHHHH
Q 004470 382 RLFDEMRGLNIIPD------LLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD---EIVYTALIDGYCKAGGMKKAFS 452 (751)
Q Consensus 382 ~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~ 452 (751)
..|.+.... +.|. ...|..+...|-..|+++.|..+|++...-..+-- ..+|..-...=.+..+++.|++
T Consensus 368 ~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~ 446 (835)
T KOG2047|consen 368 NTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALK 446 (835)
T ss_pred HHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 788777653 2222 34577888889999999999999999987644322 3455555566667788999999
Q ss_pred HHHHHHhCCCC-----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 004470 453 LHNNMVHMRLT-----------------PNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAG 515 (751)
Q Consensus 453 ~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g 515 (751)
++++.....-. .+...|...++..-..|-++....+++.+++..+. ++...-.....+-...
T Consensus 447 lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~ 525 (835)
T KOG2047|consen 447 LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHK 525 (835)
T ss_pred HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhH
Confidence 98887643111 12345666677777788899999999999887654 3433333333445566
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhH
Q 004470 516 NILQAVKLMEDMEVAGFHPDT-FTYTTIMDAYCK---SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNG--FCMSGMIED 589 (751)
Q Consensus 516 ~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~ 589 (751)
-++++.+++++-...--.|++ ..|++.+.-+.+ ...++.|..+|++.++ |++|...-+-.|+.+ --+.|-...
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 788999988876554334554 456666655543 2478999999999998 677655433333322 224588889
Q ss_pred HHHHHHHHHHcCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHH
Q 004470 590 GEKLLKWMLEKGLKPN--AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNT---YNILLQGHCKARNMKEAWFLH 664 (751)
Q Consensus 590 A~~l~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~ 664 (751)
|+.++++.... +.+. ...||..|.--...=.+....++|++.++. -|+... .--..+.-++.|..+.|..++
T Consensus 605 amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 605 AMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 99999997654 3333 356888776655555566778889988884 566444 333455667899999999999
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHhcCCHH
Q 004470 665 KEMVQK-GFNLTTSSYNALIKGFLKRKKYL 693 (751)
Q Consensus 665 ~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~ 693 (751)
...-+. ++..+...|.+.-..-.+.|+-+
T Consensus 682 a~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 682 AHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 887664 56667888998888888999933
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.7e-09 Score=99.01 Aligned_cols=485 Identities=11% Similarity=0.088 Sum_probs=302.4
Q ss_pred cCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHH
Q 004470 142 AKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVD 221 (751)
Q Consensus 142 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 221 (751)
.+++..|+++|+-....+. . ....+-.-++.++.+.|++++|+.+|..+....-.|...
T Consensus 35 ~rDytGAislLefk~~~~~---E------------------EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el 93 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDR---E------------------EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAEL 93 (557)
T ss_pred cccchhHHHHHHHhhccch---h------------------hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCccc
Confidence 5778888888877553320 0 001223347788999999999999999998766556655
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004470 222 SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGY 301 (751)
Q Consensus 222 ~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 301 (751)
..|..--.++ .|.+.+|..+-.++.+ ++-.-..|.+.-.|.|+-++-..+-+.+.+ ...---+|....
T Consensus 94 ~vnLAcc~Fy--Lg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvh 161 (557)
T KOG3785|consen 94 GVNLACCKFY--LGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVH 161 (557)
T ss_pred chhHHHHHHH--HHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHH
Confidence 5555554444 4777888777665543 333334455555677777776666655543 223334455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004470 302 CYLGELQRVLKLIEEMQIKGLKPNPYTYNSV-VRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAA 380 (751)
Q Consensus 302 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 380 (751)
.-.-.+.+|++++.+.... .|+-...|.- .-+|.+..-++-+.+++.--+.. ++.+..+.|..+....+.=+-..|
T Consensus 162 YmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~a 238 (557)
T KOG3785|consen 162 YMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTA 238 (557)
T ss_pred HHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchh
Confidence 5566789999999999876 3455555543 45677888889999999888876 344455666666655554333334
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 004470 381 YRLFDEMRGLNIIPDLLTYTAIICGFCLT-----GKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHN 455 (751)
Q Consensus 381 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 455 (751)
.+-..++...+-. . | -.+.-+|+. .+-+.|++++-.+.+. -|. .--.|+-.|.+.+++.+|..+.+
T Consensus 239 e~E~k~ladN~~~-~---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 239 EDEKKELADNIDQ-E---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred HHHHHHHHhcccc-c---c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHh
Confidence 4444444443211 1 1 123333333 3446788877766653 332 23346667899999999999887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 456 NMVHMRLTPNVVTYTALADGLCKSG-------ELETANELLHEMCRKGLQLNIY-TYNSIVNGLCKAGNILQAVKLMEDM 527 (751)
Q Consensus 456 ~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 527 (751)
++.- .++.-|-.-.-.+...| .+.-|.+.|+..-+++..-|.. .-.++..++.-..++++.+..++.+
T Consensus 310 dl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 310 DLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred hcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7642 12222222222233333 3566777777666655443332 3445666666777899999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh
Q 004470 528 EVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAA 607 (751)
Q Consensus 528 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~ 607 (751)
...-...|...+ .+.++++..|.+.+|+++|-++....++.+..-...|..+|.+.++++.|.+++-++-. ..+..
T Consensus 386 ~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~f 461 (557)
T KOG3785|consen 386 ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERF 461 (557)
T ss_pred HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHH
Confidence 876544445444 47889999999999999999887665554454556677899999999999887755432 22344
Q ss_pred hHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 004470 608 TYN-PLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT-TSSYNALIKG 685 (751)
Q Consensus 608 ~~~-~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 685 (751)
+.. .+..-|.+.+.+--|.+.|+.+... .|++..|. |+-.....+|..+....-.|- ......++..
T Consensus 462 sLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~~~~rEVvhl 530 (557)
T KOG3785|consen 462 SLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------GKRGACAGLFRQLANHKTDPIPISQMREVVHL 530 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------CccchHHHHHHHHHcCCCCCCchhHHHHHHHH
Confidence 433 3445678999999999999988875 46666553 444445556666655433222 2344455555
Q ss_pred HHhcC
Q 004470 686 FLKRK 690 (751)
Q Consensus 686 ~~~~g 690 (751)
+...+
T Consensus 531 lr~~~ 535 (557)
T KOG3785|consen 531 LRMKP 535 (557)
T ss_pred HHhCC
Confidence 54443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-11 Score=131.96 Aligned_cols=258 Identities=13% Similarity=0.052 Sum_probs=178.5
Q ss_pred CChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHH--HHHhcCChhHHHHHHHHHHhCCCccCH
Q 004470 143 KDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQ--VLVEARKLNEARKLFEKLLNYGLVISV 220 (751)
Q Consensus 143 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~p~~ 220 (751)
..+++|..+++++++.+.. .+.... .+- .++..+.. .+...+++++|...++++++. .|+.
T Consensus 275 ~~~~~A~~~~~~Al~ldP~---~a~a~~--~La----------~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~ 337 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN---SIAPYC--ALA----------ECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNN 337 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc---cHHHHH--HHH----------HHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCC
Confidence 4689999999999987632 221111 110 01111111 122456789999999999987 6777
Q ss_pred HhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004470 221 DSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIING 300 (751)
Q Consensus 221 ~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 300 (751)
......++.+....|++++|...|+++.+.+|. +...+..+...+...|++++|+..+++..+.... +...+..++..
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~ 415 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWI 415 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHH
Confidence 766667777766789999999999999998765 6778888999999999999999999998876532 22333444555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 004470 301 YCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPD-NVIYTTLIDGFCKMGNVAA 379 (751)
Q Consensus 301 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 379 (751)
+...|++++|.+.++++.+...+-+...+..+..++...|++++|...++++... .|+ ....+.+...|+..| ++
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~ 491 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ER 491 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HH
Confidence 7778999999999999876642324555777888889999999999999987765 333 445566667778877 47
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 380 AYRLFDEMRGLN-IIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRG 426 (751)
Q Consensus 380 A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 426 (751)
|...++.+.+.. ..+....+ +-..+.-.|+-+.+..+ +++.+.+
T Consensus 492 a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 492 ALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777777765532 11222223 33345556777777666 7777653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-08 Score=108.85 Aligned_cols=585 Identities=11% Similarity=0.017 Sum_probs=310.9
Q ss_pred hhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCCh
Q 004470 106 DIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDP 185 (751)
Q Consensus 106 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (751)
.++++...|+..|-.+.+..+.-..+++.+++++...-+...|.+.+..+...+ +.+.
T Consensus 469 ~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD----------------------atda 526 (1238)
T KOG1127|consen 469 CMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD----------------------ATDA 526 (1238)
T ss_pred HhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------------------chhh
Confidence 356777788888887777777777889999999987778888888888877665 4455
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC-HHhHHHH-HHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVIS-VDSCNLF-LSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMI 263 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l-l~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 263 (751)
.+.-..+..|++...++.|..+.-..-+. .|- ....|-. .+-++...++...|..-|+.+....|. |...|..|+
T Consensus 527 eaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLG 603 (1238)
T KOG1127|consen 527 EAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLG 603 (1238)
T ss_pred hhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHH
Confidence 66677888899999999998884433322 111 1111111 344444668889999999999988776 888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHC------CCCCCcccHHHHHHH
Q 004470 264 HCLCRFGKIKEAHLLLLQMELRGCSPDVVSFST--IINGYCYLGELQRVLKLIEEMQIK------GLKPNPYTYNSVVRL 335 (751)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~ 335 (751)
.+|.+.|++..|+++|.+..... |+ .+|.. .....|..|++++|+..+...... +..--..++......
T Consensus 604 eAY~~sGry~~AlKvF~kAs~Lr--P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd 680 (1238)
T KOG1127|consen 604 EAYPESGRYSHALKVFTKASLLR--PL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKD 680 (1238)
T ss_pred HHHHhcCceehHHHhhhhhHhcC--cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999998877642 33 23332 233457789999999998887543 111123333333444
Q ss_pred HHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004470 336 LCKTSKVVEAETILREMMNQ-------GIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCL 408 (751)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 408 (751)
+...|-...|...+++-++. ....+...|-.+ ..|..+|-... .+ .|+......+..-.-.
T Consensus 681 ~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~ 748 (1238)
T KOG1127|consen 681 SAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLIILSKQLEK 748 (1238)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHh
Confidence 44445445555555544332 111122222221 12233333322 11 1222111111111111
Q ss_pred cCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cC----ChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 409 TGKM---V---EAEKLFHEMLGRGLEPDEIVYTALIDGYCK----AG----GMKKAFSLHNNMVHMRLTPNVVTYTALAD 474 (751)
Q Consensus 409 ~g~~---~---~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 474 (751)
.+.. | -+.+.+-.-++ ...+..+|..|+..|.+ .| +...|+..+.+.++.. ..+..+|+.|.-
T Consensus 749 ~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGV 825 (1238)
T KOG1127|consen 749 TGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGV 825 (1238)
T ss_pred cccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHH
Confidence 1111 1 01111111111 11123334444333322 11 2235666666655542 225666666655
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004470 475 GLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVK 554 (751)
Q Consensus 475 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 554 (751)
. ...|++.-|..-|-+-.... +....+|..+.-.+.+..+++.|...|....... +.+...|-.........|+.-+
T Consensus 826 l-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~ 902 (1238)
T KOG1127|consen 826 L-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIE 902 (1238)
T ss_pred h-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHH
Confidence 4 55566666666665554442 2255666666666777777777777777776654 4455555444444455666666
Q ss_pred HHHHHHHH--H--hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----------HHcCCCCCHhhHHHHHHHHHHcC
Q 004470 555 AHELLRDM--L--DKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWM----------LEKGLKPNAATYNPLIKQHCLRN 620 (751)
Q Consensus 555 A~~~~~~~--~--~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~----------~~~g~~p~~~~~~~l~~~~~~~g 620 (751)
+..+|..- . ..|--++..-|-........+|+.++-+...+++ .. +.+.+...|...+...-+.+
T Consensus 903 ~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ 981 (1238)
T KOG1127|consen 903 RLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLE 981 (1238)
T ss_pred HHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHH
Confidence 66666541 1 1122233333322222333445544433332222 22 23334556666665556666
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 621 DMRTTAKIYKGMCAQ-GITPDGNTYN----ILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEA 695 (751)
Q Consensus 621 ~~~~A~~~~~~m~~~-g~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 695 (751)
.++.|.+...+.+.. ...-+...|+ .+.+.++..|+++.|..-+..... ..+..+..+-+.. +-.|+++++
T Consensus 982 ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~s 1057 (1238)
T KOG1127|consen 982 EYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSS 1057 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHH
Confidence 666666655554320 0012333333 233445555666655443322111 0112222211211 335677777
Q ss_pred HHHHHHHHHCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 696 RELFEEMRRGG-LVADR-EIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 696 ~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.+.|++++..- -..|. .....++.+...+|..+.|..++-+.....
T Consensus 1058 l~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls 1105 (1238)
T KOG1127|consen 1058 LEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS 1105 (1238)
T ss_pred HHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 77777776521 12222 333445556666777777777776665544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-08 Score=102.78 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=79.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 586 MIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYK--------GMCAQGITPDGNTYNILLQGHCKARNM 657 (751)
Q Consensus 586 ~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~g~~ 657 (751)
...+|.+++....+....-...+.-..+......|+++.|++++. .+.+.+..| .+...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCC
Confidence 455666666655554222223444455555666777777777776 444433333 3334455566666665
Q ss_pred HHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 004470 658 KEAWFLHKEMVQK--GFNLT----TSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITL 731 (751)
Q Consensus 658 ~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 731 (751)
+.|..++.+++.. .-.+. ..++..++..-.+.|+-++|..+++++.+.. ++|..+...++-+|++. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 5566555555431 00111 1233333333445677777777777777654 56666666666666655 456665
Q ss_pred HHHH
Q 004470 732 ELCD 735 (751)
Q Consensus 732 ~~~~ 735 (751)
.+-+
T Consensus 512 ~l~k 515 (652)
T KOG2376|consen 512 SLSK 515 (652)
T ss_pred HHhh
Confidence 5433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-10 Score=110.87 Aligned_cols=201 Identities=14% Similarity=0.139 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004470 536 TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQ 615 (751)
Q Consensus 536 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~ 615 (751)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 4556666677777777777777777776553 33556666777777777777777777777776532 244566666777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 694 (751)
+...|++++|.+.+++..+....+ ....+..+...+...|++++|...+++..+..+. +...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 777788888888887777642222 3455666778888888999999888888876543 56678888888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 695 ARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 695 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
|...++++.+. .+.+...+..++..+...|+.++|..+.+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999888876 3556677777778888889999988887776554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-10 Score=128.17 Aligned_cols=219 Identities=13% Similarity=0.044 Sum_probs=165.2
Q ss_pred CCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 234 CDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKL 313 (751)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 313 (751)
.+++++|...++++.+.++. +..++..+...+...|++++|...|++..+.+. .+...|..+...+...|++++|+..
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46789999999999999776 888999999999999999999999999988653 3567788899999999999999999
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 004470 314 IEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNII 393 (751)
Q Consensus 314 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 393 (751)
+++..+.... +...+..++..+...|++++|...++++.....+-+...+..+...|...|+.++|...++++......
T Consensus 395 ~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 395 INECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 9999987432 333444455567778999999999999887642334556788888999999999999999998665322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 004470 394 PDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRG-LEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMR 461 (751)
Q Consensus 394 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 461 (751)
+....+.+...|+..| ++|...++.+.+.. ..+....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 474 -~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 474 -GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred -hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 3445566666777777 47888777776541 12222222 33445556777777776 7777654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-07 Score=100.71 Aligned_cols=574 Identities=12% Similarity=0.081 Sum_probs=296.0
Q ss_pred chhHHHHHHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHH
Q 004470 96 RSDHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLI 175 (751)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~ 175 (751)
+|+.+..+-.-++.+|+.|+.|........++ +.....+..+....+...++.+++-.+++.+..+.+.--+.+++.-+
T Consensus 510 TPdymflLq~l~r~sPD~~~qFa~~l~Q~~~~-~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL 588 (1666)
T KOG0985|consen 510 TPDYMFLLQQLKRSSPDQALQFAMMLVQDEEP-LADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNL 588 (1666)
T ss_pred CccHHHHHHHHHccChhHHHHHHHHhhccCCC-cccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHh
Confidence 56655544344578999999988876554432 23344445555556667788888888887764433322222222211
Q ss_pred Hhhhc-----CCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--C----CccCHHhHHHHHHHHHhCCCCHHHHH
Q 004470 176 YTYKD-----WGS---DPHVFDIFFQVLVEARKLNEARKLFEKLLNY--G----LVISVDSCNLFLSRLSNTCDGLRMVV 241 (751)
Q Consensus 176 ~~~~~-----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g----~~p~~~~~~~ll~~l~~~~~~~~~a~ 241 (751)
-..+. .+. +..-+-..++.|-++|-+..|++.|..+... - ...+..+ +.+-+ ..-.++.+.
T Consensus 589 ~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEw---Lv~yF--g~lsve~s~ 663 (1666)
T KOG0985|consen 589 VHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEW---LVNYF--GSLSVEDSL 663 (1666)
T ss_pred ccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHH---HHHHH--HhcCHHHHH
Confidence 10000 011 1112457889999999999999888766321 0 0111111 11112 234578889
Q ss_pred HHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 242 KSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELR-----------GCSPDVVSFSTIINGYCYLGELQRV 310 (751)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------g~~p~~~~~~~li~~~~~~g~~~~A 310 (751)
+.+..|...++..|..+.-.+..-|+..=-.+.-+++|+..... ++.-|....-..|.+.|+.|++.+.
T Consensus 664 eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEv 743 (1666)
T KOG0985|consen 664 ECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEV 743 (1666)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHH
Confidence 99999988888878888777888888877778888888876542 2344555566788999999998888
Q ss_pred HHHHHHH------------HHCCC---CC-----CcccHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCC
Q 004470 311 LKLIEEM------------QIKGL---KP-----NPYTYNSVVRLLCKTSKVVEAETIL-------------REMMNQGI 357 (751)
Q Consensus 311 ~~~~~~m------------~~~g~---~p-----~~~~~~~li~~~~~~g~~~~A~~~~-------------~~m~~~g~ 357 (751)
.++-++- ++..+ .| |.+.+..=+-.|.-.++..+-++++ ..++...+
T Consensus 744 ERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC 823 (1666)
T KOG0985|consen 744 ERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC 823 (1666)
T ss_pred HHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC
Confidence 7766542 12111 11 1111111111122222222222222 22222211
Q ss_pred CCCHHHH-------------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HH---HHH
Q 004470 358 VPDNVIY-------------TTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEA-EK---LFH 420 (751)
Q Consensus 358 ~p~~~~~-------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~---~~~ 420 (751)
+.... .-|+.-.-|.+++.--...++...+.|.. |..++|.|...|...++-.+- ++ .|+
T Consensus 824 --~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYD 900 (1666)
T KOG0985|consen 824 --SEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYD 900 (1666)
T ss_pred --cHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcch
Confidence 11111 12233344566666667777888888877 888999888777655432221 10 011
Q ss_pred HH------HH-----------CCC--------CCCHHHHHHHHHHHHHcCChh---HH--------HHHHHHHHhCCCC-
Q 004470 421 EM------LG-----------RGL--------EPDEIVYTALIDGYCKAGGMK---KA--------FSLHNNMVHMRLT- 463 (751)
Q Consensus 421 ~m------~~-----------~~~--------~p~~~~~~~li~~~~~~g~~~---~A--------~~~~~~~~~~~~~- 463 (751)
.. .+ +|. .-....|....+...+..+.+ +. ..+.++....+++
T Consensus 901 s~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E 980 (1666)
T KOG0985|consen 901 SKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPE 980 (1666)
T ss_pred hhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCc
Confidence 00 00 110 011122333344444443322 22 2344555544332
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 464 -PNVVTYTALADGLCKSGELETANELLHEMCRKGLQ--LNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYT 540 (751)
Q Consensus 464 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 540 (751)
.|+...+.-+.++...+-..+-+++++++.-.+-. -+...-|.|+-... .-+.....+..+++...+ .|+..
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a~~ia--- 1055 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-APDIA--- 1055 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-chhHH---
Confidence 34555566677777778888888888877643211 11112222222222 223344444555444332 12211
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC---------------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 541 TIMDAYCKSGEMVKAHELLRDMLDK---------------------GLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLE 599 (751)
Q Consensus 541 ~li~~~~~~g~~~~A~~~~~~~~~~---------------------~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 599 (751)
......+-+++|..+|+..-.. .-...+..|..+..+-.+.|...+|++-|-+.
T Consensus 1056 ---~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1056 ---EIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred ---HHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 1112222233333333221100 00113345666666666666666666555332
Q ss_pred cCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004470 600 KGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSY 679 (751)
Q Consensus 600 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 679 (751)
.|...|..+++...+.|.+++-.+++....++.-+|...+ .||-+|++.+++.+-.+++. -|+....
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~-------gpN~A~i 1197 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA-------GPNVANI 1197 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc-------CCCchhH
Confidence 2555666666666667777776666666666555554443 56666666666655443321 2455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 004470 680 NALIKGFLKRKKYLEARELFEE 701 (751)
Q Consensus 680 ~~l~~~~~~~g~~~~A~~~~~~ 701 (751)
..+++-|...|.++.|.-+|..
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~ 1219 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSN 1219 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHH
Confidence 5666666666666666555544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.9e-08 Score=95.64 Aligned_cols=293 Identities=13% Similarity=0.040 Sum_probs=213.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 405 GFCLTGKMVEAEKLFHEMLGR-GLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELE 483 (751)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 483 (751)
+.|-.++...|...+-.+... -++.|+.....+.+.+...|+.++|...|+.....++. ++.......-.+.+.|+++
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHh
Confidence 344456655555555444333 25557788899999999999999999999998765321 2222333344567788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 484 TANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDML 563 (751)
Q Consensus 484 ~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 563 (751)
....+...+.... .-....|-.-+..+...++++.|+.+-++.+..+ +.+...|-.-...+...|++++|.-.|+..+
T Consensus 284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 8888888776542 1234445444555667788999999999888765 5566677667778889999999999999888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCC-
Q 004470 564 DKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLI-KQHCL-RNDMRTTAKIYKGMCAQGITPD- 640 (751)
Q Consensus 564 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~m~~~g~~p~- 640 (751)
... +-+..+|..|+..|...|++.+|.-+-+...+. ...+..+...+. ..+.- -.--++|.+++++.++ +.|+
T Consensus 362 ~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y 437 (564)
T KOG1174|consen 362 MLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIY 437 (564)
T ss_pred hcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCcc
Confidence 753 457889999999999999999998888777664 333555555442 22222 2234788899988877 4566
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 641 GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
....+.+...+...|..++++.++++.+.. .||....+.|++.+...+.+++|.+.|..++..+
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 445677788888999999999999998864 5688899999999999999999999999998854
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-08 Score=106.06 Aligned_cols=295 Identities=16% Similarity=0.114 Sum_probs=194.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhc
Q 004470 190 IFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRF 269 (751)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 269 (751)
-.+.++...|++++|++.+..-.+. -+|...+.-..+.++...|+.++|..+|..+++.+|. |..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhh
Confidence 3456778899999999999876554 6888888877888877889999999999999998765 666666777666333
Q ss_pred C-----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHH
Q 004470 270 G-----KIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQ-RVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVV 343 (751)
Q Consensus 270 g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 343 (751)
. +.+...++|+++...- |.......+.-.+..-.+++ .+...+..+..+|++ .+|+.|-..|....+.+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 2 5677788888876643 33333333322222222333 345556666777754 35666666666555555
Q ss_pred HHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004470 344 EAETILREMMNQ----G----------IVPDN--VIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFC 407 (751)
Q Consensus 344 ~A~~~~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 407 (751)
-..+++...... | -+|.. +++..+...|...|++++|++.+++..+..+. .+..|..-...+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Confidence 555666655432 1 12333 35566677788888888888888888776432 3566777778888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhc
Q 004470 408 LTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVV------TY--TALADGLCKS 479 (751)
Q Consensus 408 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~ 479 (751)
+.|++++|.+.++....... -|...-+-.+..+.+.|+.++|..++....+.+..|-.. .| .....+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776632 255566666777788888888888887776655322211 11 2345667777
Q ss_pred CCHHHHHHHHHHHHH
Q 004470 480 GELETANELLHEMCR 494 (751)
Q Consensus 480 g~~~~A~~l~~~m~~ 494 (751)
|++..|++-|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 777777776666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-07 Score=100.80 Aligned_cols=434 Identities=12% Similarity=0.018 Sum_probs=224.8
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHH
Q 004470 253 CWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN-PYTYNS 331 (751)
Q Consensus 253 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 331 (751)
..|...|..|.-++.+.|+++.+.+.|++.... +.-....|+.+...|...|.-..|..++++-......|+ ...+-.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 345666666666666666666666666665432 223445566666666666666666666665544322232 222222
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhCCCCCC
Q 004470 332 VVRLLC-KTSKVVEAETILREMMNQ--GI--VPDNVIYTTLIDGFCKM-----------GNVAAAYRLFDEMRGLNIIPD 395 (751)
Q Consensus 332 li~~~~-~~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~ 395 (751)
.-+.|. +.+.+++++..-.+..+. |. ......|..+.-+|... -...++++.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 222222 234455555544444431 10 11222333333333211 1133445555555444332 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004470 396 LLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADG 475 (751)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 475 (751)
......+.--|+..++++.|.+..++.++-+-..+...|..|.-.+...+++.+|+.+.+...+.-. -|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchhhhhh
Confidence 1111122223444555555655555555554344555555555555555555555555555443210 011111111222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHH
Q 004470 476 LCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVA--GFHPDTFTYTTIMDAYCKSGEMV 553 (751)
Q Consensus 476 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~ 553 (751)
-..-++.++++.....+..-- + +... ....++-....+....+.-. .......++..+.......+...
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~w-e-~~~~-------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALW-E-AEYG-------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHH-H-hhhh-------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 223444444444444433210 0 0000 00111111111111111100 00111222222222111111000
Q ss_pred HHHHHHHHHHhCCC--CCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHH
Q 004470 554 KAHELLRDMLDKGL--QPS------VVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTT 625 (751)
Q Consensus 554 ~A~~~~~~~~~~~~--~p~------~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 625 (751)
..... +..... .|+ ...|......+.+.++.++|...+.+..... ......|......+...|..++|
T Consensus 628 ~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 628 GSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred ccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHH
Confidence 00000 111111 122 2345566777888899999998888887652 33556677777778889999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 626 AKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWF--LHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEM 702 (751)
Q Consensus 626 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 702 (751)
.+.|...... .| ++.+...+...+.+.|+..-|.. ++..+.+.++. +...|..++..+-+.|+.++|.+.|..+
T Consensus 704 ~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 704 KEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999998874 45 46778899999999998887777 99999998876 8999999999999999999999999999
Q ss_pred HHC
Q 004470 703 RRG 705 (751)
Q Consensus 703 ~~~ 705 (751)
.+.
T Consensus 781 ~qL 783 (799)
T KOG4162|consen 781 LQL 783 (799)
T ss_pred Hhh
Confidence 874
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.3e-08 Score=104.04 Aligned_cols=129 Identities=23% Similarity=0.244 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004470 433 VYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLC 512 (751)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~ 512 (751)
++..+...|...|++++|+.+.++.++..+. .+..|..-...+-..|++++|.+.++.....+.. |...-+-.+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 3445556666677777777777777665422 3556666677777777777777777777666443 5555566666667
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 513 KAGNILQAVKLMEDMEVAGFHPDT--------FTYTTIMDAYCKSGEMVKAHELLRDML 563 (751)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~ 563 (751)
+.|++++|.+++....+.+..|.. ........+|.+.|++..|++.|..+.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777777777776655432221 112334566777777777766665554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.6e-10 Score=109.62 Aligned_cols=201 Identities=16% Similarity=0.058 Sum_probs=133.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMI 263 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 263 (751)
.+..+..++..+...|++++|.+.++++++. .|+.......++.++...|++++|.+.|+++.+..+. +...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 3567788899999999999999999998876 4655555555566665678888888888888776544 556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCH
Q 004470 264 HCLCRFGKIKEAHLLLLQMELRGC-SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKV 342 (751)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 342 (751)
..+...|++++|.+.|++...... ......+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 777888888888888877765321 1223445556666667777777777777766552 22344566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004470 343 VEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRG 389 (751)
Q Consensus 343 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 389 (751)
++|...+++.... .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666666666654 233445555555666666666666666555543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-09 Score=113.88 Aligned_cols=237 Identities=23% Similarity=0.234 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC--C
Q 004470 503 TYNSIVNGLCKAGNILQAVKLMEDMEVA-----G-FHPDTFT-YTTIMDAYCKSGEMVKAHELLRDMLDK-----GL--Q 568 (751)
Q Consensus 503 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~ 568 (751)
+...+...|...|+++.|+.+++..... | ..|.+.+ .+.+...|...+++++|..+|+++... |- +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333555555555555555555554332 1 0122222 233556667777777777777776532 21 1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-CCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCC
Q 004470 569 PSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEK-----GL-KPNA-ATYNPLIKQHCLRNDMRTTAKIYKGMCAQ---GIT 638 (751)
Q Consensus 569 p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-----g~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~ 638 (751)
--..+++.|..+|.+.|++++|..+++...+. |. .|+. ..++.+...++..+++++|..++.+..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 12345666666777777777777777666532 11 1222 23556666778888888888888766541 112
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 004470 639 PD----GNTYNILLQGHCKARNMKEAWFLHKEMVQK-----GF-NL-TTSSYNALIKGFLKRKKYLEARELFEEMRR--- 704 (751)
Q Consensus 639 p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 704 (751)
++ ..+++.|...|.+.|++++|.++++++++. |- .+ ....++.|...|.+.+++.+|.++|++...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 456889999999999999999999988863 11 11 245778888999999999999988887654
Q ss_pred -CC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 705 -GG--LVADREIYYFFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 705 -~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
.| .+....+|..|+..|.+.|++|+|.++.+.++.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22 122346788899999999999999999988873
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.3e-08 Score=94.08 Aligned_cols=294 Identities=10% Similarity=-0.027 Sum_probs=218.5
Q ss_pred HHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHH
Q 004470 441 YCKAGGMKKAFSLHNNMVHM-RLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIY-TYNSIVNGLCKAGNIL 518 (751)
Q Consensus 441 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~ 518 (751)
.+-.++...|...+-.+... -++-|+.....+...+...|+.++|...|+.....+ |+.. ......-.+.+.|+.+
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHh
Confidence 34455555555554444332 355688889999999999999999999999987652 2222 2222233456788898
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 519 QAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWML 598 (751)
Q Consensus 519 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 598 (751)
+...+...+.... .-....|..-+.......++..|+.+-++.++.+ +.+...|-.=...+...|+.++|.-.|+...
T Consensus 284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 8888888876542 2334444444555567789999999999988764 4466666666677888999999999999988
Q ss_pred HcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCCH
Q 004470 599 EKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILL-QGHCK-ARNMKEAWFLHKEMVQKGFNLTT 676 (751)
Q Consensus 599 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~ 676 (751)
... +-+...|..|+.+|...|++.+|.-+-+...+. ...+..+...+. ..+.- -.--++|.+++++.+...+. -.
T Consensus 362 ~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~ 438 (564)
T KOG1174|consen 362 MLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YT 438 (564)
T ss_pred hcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cH
Confidence 752 236789999999999999999999888777663 344666665553 33332 22357899999988765432 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 677 SSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 677 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
...+.++..+...|++++++.++++.+.. .||......|++.+...+.+++|.+.|..++...+.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 46678888899999999999999999874 789999999999999999999999999999877654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=109.88 Aligned_cols=230 Identities=12% Similarity=0.049 Sum_probs=151.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHh
Q 004470 189 DIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCR 268 (751)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 268 (751)
.-++++|.+.|++.+|.+.|+..++. .|-..|+.. |+..+..-.+.+.|+.+|.+-.+.-| .|+....-..+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfll-LskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLL-LSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHH-HHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHH
Confidence 45677777777777777777777766 333334333 33344456677777777777766532 244444556677777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 004470 269 FGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETI 348 (751)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 348 (751)
.++.++|.++|++..+... .++.+..++..+|.-.++.+-|+..++++.+.|+. ++..|+.+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 7777777777777665432 45566666666777777777777777777777765 667777777777777777777777
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 349 LREMMNQGIVPD--NVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGR 425 (751)
Q Consensus 349 ~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 425 (751)
|+..+.---.|+ ..+|..|.....-.||+..|.+.|+-....+.. +...+|.|.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 766665422222 245666666666777777777777777665433 5667777777777777777777777766553
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-09 Score=103.71 Aligned_cols=236 Identities=12% Similarity=0.040 Sum_probs=194.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMN 579 (751)
Q Consensus 500 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 579 (751)
|-.--+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-..|.+..++..|+.++.+-++. ++-|+.....+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 4444467888999999999999999988876 577888888999999999999999999998876 3445444556677
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 580 GFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKE 659 (751)
Q Consensus 580 ~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 659 (751)
.+...++.++|.++++...+.. ..++....++...|.-.++.+-|..+|++++..|+. ++..|+.+.-+|.-.+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 7888899999999999988763 335666677777888899999999999999998864 78888888888889999999
Q ss_pred HHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 660 AWFLHKEMVQKGFNLT--TSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 660 A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
++.-|++++..--.|+ ..+|..+.......|++.-|.+.|+-++..+ +.+.+.++.|+-.-.+.|+.++|+.+++.+
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999999887644343 4588888888889999999999999988765 556788888888888999999999999987
Q ss_pred HHcC
Q 004470 738 IECY 741 (751)
Q Consensus 738 ~~~~ 741 (751)
....
T Consensus 456 ~s~~ 459 (478)
T KOG1129|consen 456 KSVM 459 (478)
T ss_pred hhhC
Confidence 6654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-11 Score=87.70 Aligned_cols=50 Identities=36% Similarity=0.689 Sum_probs=37.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 004470 254 WNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCY 303 (751)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 303 (751)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57777777777777777777777777777777777777777777777764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.9e-07 Score=94.37 Aligned_cols=230 Identities=16% Similarity=0.188 Sum_probs=141.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-C--------CccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCc
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNY-G--------LVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICW 254 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g--------~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~ 254 (751)
+-.+|+.|++.+.+..+++-|.-.+..|... | -.|+..... ...+.-..|.+++|..+|++-...
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eak--vAvLAieLgMlEeA~~lYr~ckR~---- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAK--VAVLAIELGMLEEALILYRQCKRY---- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhH--HHHHHHHHhhHHHHHHHHHHHHHH----
Confidence 3468999999999999999999888777432 1 123222222 222223458888999998877654
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVR 334 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 334 (751)
..|=..|...|.+++|.++-+.-.+- .-..||.....-+-..++.+.|++.|++.. ...++. .+
T Consensus 830 -----DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~-------~hafev-~r 893 (1416)
T KOG3617|consen 830 -----DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAG-------VHAFEV-FR 893 (1416)
T ss_pred -----HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcC-------ChHHHH-HH
Confidence 34555677789999998887653221 123466666666777888888888887532 111111 11
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 335 LLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVE 414 (751)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 414 (751)
.+. .+....++..+.+ .|...|..-...+-..|+++.|+.+|..... |-++++..|-.|+.++
T Consensus 894 mL~--e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 894 MLK--EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDK 956 (1416)
T ss_pred HHH--hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchH
Confidence 110 1112222222222 2344555555555667788888877766543 5666777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004470 415 AEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMV 458 (751)
Q Consensus 415 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 458 (751)
|-++-++- -|.....-|.+.|-..|++.+|...|.+..
T Consensus 957 Aa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 957 AARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77665542 255556667777777777777777776654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-08 Score=107.49 Aligned_cols=236 Identities=24% Similarity=0.251 Sum_probs=156.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C--CCC
Q 004470 469 YTALADGLCKSGELETANELLHEMCRK-----GL-QLNIY-TYNSIVNGLCKAGNILQAVKLMEDMEVA-----G--FHP 534 (751)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~--~~~ 534 (751)
...+...|...|++++|..+++...+. |. .|... ..+.+...|...+++++|..+|+++... | .+.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333555555555555555555544332 11 11221 2334566777777777777777776441 2 111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCC
Q 004470 535 DTFTYTTIMDAYCKSGEMVKAHELLRDMLDK-----GL-QPSV-VTFNVLMNGFCMSGMIEDGEKLLKWMLEK---GLKP 604 (751)
Q Consensus 535 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~---g~~p 604 (751)
-..+++.|..+|.+.|++++|...+++..+. |. .|.+ ..++.++..++..+++++|..+++...+. -+.+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 2345666777788888888877777766431 11 1222 23566677788888999998888877643 1222
Q ss_pred C----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 004470 605 N----AATYNPLIKQHCLRNDMRTTAKIYKGMCAQ-----G-ITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQ---- 669 (751)
Q Consensus 605 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 669 (751)
+ ..+++.|...|...|++++|.+++++++.. | ..+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 2 357888999999999999999999988762 1 122 245678889999999999999999888654
Q ss_pred CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 670 KGFN-L-TTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 670 ~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.|+. | ...+|..|+..|...|++++|.++.+....
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2332 2 345889999999999999999999888763
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-07 Score=96.87 Aligned_cols=155 Identities=10% Similarity=0.052 Sum_probs=97.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 585 GMIEDGEKLLKWMLEKGLKPNAATYNPLIKQH-CLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFL 663 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 663 (751)
+..+.+.++..... +..|....=+.+..+. ++......|.+++...-+....-...+.-..+......|+++.|+++
T Consensus 321 nk~~q~r~~~a~lp--~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLP--GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCC--ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44455555444332 2234433333333333 33335778888888777643222245566677888899999999999
Q ss_pred HH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCChhH
Q 004470 664 HK--------EMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG--GLVAD----REIYYFFVDINFEEGNTEI 729 (751)
Q Consensus 664 ~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~ 729 (751)
+. ...+.+.. +.+...+...+.+.++.+.|..++.+++.- .-.+. ..++..++..-.+.|+.++
T Consensus 399 l~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 99 55555444 455666777888888877788877777641 11122 2334445555677799999
Q ss_pred HHHHHHHHHHcCCC
Q 004470 730 TLELCDAAIECYLV 743 (751)
Q Consensus 730 A~~~~~~~~~~~~~ 743 (751)
|..+++++++....
T Consensus 477 a~s~leel~k~n~~ 490 (652)
T KOG2376|consen 477 ASSLLEELVKFNPN 490 (652)
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999986543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-05 Score=88.15 Aligned_cols=361 Identities=12% Similarity=0.168 Sum_probs=197.8
Q ss_pred chhHHHHHHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHH--HH
Q 004470 96 RSDHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFV--ER 173 (751)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~--~~ 173 (751)
+.+.++--+...-+||++|++.-..+. -+.--.-+..--..|..+|++++|..+-...-+ .++ ..
T Consensus 329 ~e~~IVpyi~~~LqnpeLal~~A~R~n--LaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPr-----------gILRt~~ 395 (1666)
T KOG0985|consen 329 NEQNIVPYITNVLQNPELALRLAVRAN--LAGAENLFVRRFNELFAQGEYEEAAKVAASSPR-----------GILRTPG 395 (1666)
T ss_pred cCcceehhhhccccChHHHHHhhhhcC--CccHHHHHHHHHHHHHhCccHHHHHHHHHhCch-----------hhhcCHH
Confidence 334444444445578999987554331 233333444556778889999999876554211 000 00
Q ss_pred HHHhhhcCC---CChhhHHHHHHHHHhcCChhHHHH--HHHHHHhCC--------CccCHHhHHHHHHHHHhCCCCHHHH
Q 004470 174 LIYTYKDWG---SDPHVFDIFFQVLVEARKLNEARK--LFEKLLNYG--------LVISVDSCNLFLSRLSNTCDGLRMV 240 (751)
Q Consensus 174 l~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g--------~~p~~~~~~~ll~~l~~~~~~~~~a 240 (751)
-+..+..+| ..+.-......++..+|.++++.. +.+-.+..| ..-+-.+|.-=++-+. +.-+..-|
T Consensus 396 Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqGkLNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlV-K~~d~~lA 474 (1666)
T KOG0985|consen 396 TINKFQSVPAQPGQPSPLLQYFGTLLDQGKLNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLV-KPYDTTLA 474 (1666)
T ss_pred HHHHHHcCCCCCCCCCcHHHHHHHHHhcccccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCcc-ccCCchHH
Confidence 112222222 233334445556666666655442 222222211 0112223333333333 22334456
Q ss_pred HHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 241 VKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIK 320 (751)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 320 (751)
+.+|.++... +.++.+|...|+++++.-.. .+.|..||. -.++....+ -..|.+.++...|.+.
T Consensus 475 L~iYlrAnvp---------~KVi~cfAE~Gqf~KiilY~---kKvGyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~ 538 (1666)
T KOG0985|consen 475 LSIYLRANVP---------AKVIQCFAETGQFKKIILYA---KKVGYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQD 538 (1666)
T ss_pred HHHHHHcCCc---------HHHHHHHHHhcchhHHHHHH---HHcCCCccH---HHHHHHHHc-cChhHHHHHHHHhhcc
Confidence 6666555332 56778888899998887765 446777884 455666555 6788888888888774
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------------CCCH------------HHHHHHHHHH
Q 004470 321 GLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGI-----------------VPDN------------VIYTTLIDGF 371 (751)
Q Consensus 321 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------------~p~~------------~~~~~li~~~ 371 (751)
. |....++.+...+...+....+..++-+.++..- .|++ .-+..+.+.|
T Consensus 539 ~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLC 616 (1666)
T KOG0985|consen 539 E--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLC 616 (1666)
T ss_pred C--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHH
Confidence 2 2333444555555444444444444333332210 1111 1134566778
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 372 CKMGNVAAAYRLFDEMRGLNIIPDLLTYTAI-----ICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGG 446 (751)
Q Consensus 372 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 446 (751)
.+.|-...|++.+.++.+. . ..+..+.+ +-.|...-.++++.+.++.|+..++..+..+...+..-|+..=.
T Consensus 617 EKAGL~qraLehytDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg 693 (1666)
T KOG0985|consen 617 EKAGLLQRALEHYTDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLG 693 (1666)
T ss_pred HhcchHHHHHHhcccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 8889999999888776542 1 12222222 23455556678888888888877777776666666666655555
Q ss_pred hhHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 447 MKKAFSLHNNMVHM-----------RLTPNVVTYTALADGLCKSGELETANELLHE 491 (751)
Q Consensus 447 ~~~A~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 491 (751)
.+..+++|+..... ++..|+.+....|.+.|+.|++.+..++.++
T Consensus 694 ~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 694 AQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 55555555554321 1334555566677777777777766665543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-11 Score=86.34 Aligned_cols=50 Identities=50% Similarity=1.047 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 004470 289 PDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK 338 (751)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 338 (751)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 66777777777777777777777777777777777777777777777664
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.2e-08 Score=99.19 Aligned_cols=411 Identities=13% Similarity=0.035 Sum_probs=215.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 004470 298 INGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPD-NVIYTTLIDGFCKMGN 376 (751)
Q Consensus 298 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 376 (751)
.++.+..|+++.|+..|-+..... ++|-+-|..-..+|.+.|++++|.+=-.+-.+. .|+ ...|+.+..++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 355667788888888888877764 347777777788888888888877666655554 344 3567777777777888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHH
Q 004470 377 VAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGG-MKKAFSLHN 455 (751)
Q Consensus 377 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~ 455 (751)
+++|+.-|.+-++.... +...++.+..++ ..+.+. +.. -.++..+..+..--...+. .+.+....-
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 88888888877765433 555566666555 111111 100 0111222211110000000 111111111
Q ss_pred HHHhCCCCCCHHHH---HHHHHHHHhcCCHHHH-HHHHHHHH-HcCCCC----------------------CHHHHHHHH
Q 004470 456 NMVHMRLTPNVVTY---TALADGLCKSGELETA-NELLHEMC-RKGLQL----------------------NIYTYNSIV 508 (751)
Q Consensus 456 ~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A-~~l~~~m~-~~g~~~----------------------~~~~~~~li 508 (751)
+....++. ++..| ..++.+.......+.- ...-..+. ..+..| -..-...+.
T Consensus 153 ~~~~~~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lg 231 (539)
T KOG0548|consen 153 EIIQKNPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELG 231 (539)
T ss_pred HHhhcCcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHH
Confidence 11111100 00000 0111111100000000 00000000 000000 112245667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHH
Q 004470 509 NGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNV-------LMNGF 581 (751)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-------li~~~ 581 (751)
+...+..+++.|++.+....+.. .+..-++....+|...|.+.+....-....+.|.. ...-|+. +..+|
T Consensus 232 naaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhh
Confidence 77777888888888888887764 45555666777888888888887777777666532 2233333 33455
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGN-TYNILLQGHCKARNMKEA 660 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A 660 (751)
.+.++++.|+..+.+.+.....|+.. .+....+++....+...- +.|+.. --..-...+.+.|++.+|
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 56678888888888877654444322 122333444433333322 122221 112224445566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 661 WFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 661 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
++.|.+++...+. |...|....-+|.+.|.+..|++-.+..++.+ ++....|..-+.++....++++|.+.|+++++.
T Consensus 378 v~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666666544 66666666666666666666666666666653 444455555555566666666666666666655
Q ss_pred C
Q 004470 741 Y 741 (751)
Q Consensus 741 ~ 741 (751)
.
T Consensus 456 d 456 (539)
T KOG0548|consen 456 D 456 (539)
T ss_pred C
Confidence 4
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-07 Score=99.25 Aligned_cols=539 Identities=12% Similarity=0.004 Sum_probs=292.4
Q ss_pred HhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC-c
Q 004470 176 YTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC-W 254 (751)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~-~ 254 (751)
.+.+--+.-..+|..|+..|....+...|.+.|+++.+. +++....-..+...+....+++.|..+.-..-+..+. .
T Consensus 483 ~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~ 560 (1238)
T KOG1127|consen 483 RALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA 560 (1238)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence 333333444456777777777777777777777777665 4554444444444444556777776664333332111 0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN-PYTYNSVV 333 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li 333 (751)
-...|-.+.-.|.+.++...|+.-|+...+..+ .|...|..++.+|...|++..|+++|.+..... |+ .+.---..
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A 637 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEA 637 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHH
Confidence 011222244456667777777777777666443 366677777777777777777777777766542 22 22222233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHH
Q 004470 334 RLLCKTSKVVEAETILREMMNQG------IVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGL-------NIIPDLLTYT 400 (751)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~ 400 (751)
-..|..|++.+|...+......- ..--..++..+...+.-.|-..+|.+.+++-.+. ...-+...|-
T Consensus 638 ~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi 717 (1238)
T KOG1127|consen 638 VMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWI 717 (1238)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 44566777777777777665431 0001112222222222333333444444333221 1011122222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh---h---HHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 401 AIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGM---K---KAFSLHNNMVHMRLTPNVVTYTALAD 474 (751)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~li~ 474 (751)
.+. .|..+|-... .. .|+......+..-.-+.+.. + -+.+.+-.-++ ...+..+|..|+.
T Consensus 718 ~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 718 VAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGI 783 (1238)
T ss_pred HHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhH
Confidence 111 1222222222 11 22222222222212222222 1 01111111111 1223455666665
Q ss_pred HHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 475 GLCK--------SGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAY 546 (751)
Q Consensus 475 ~~~~--------~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 546 (751)
.|.+ ..+...|+..+...++.. ..+..+|+.|.-. ...|++.-|..-|-+-.... +....+|..+...+
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeE
Confidence 5544 123346778888777653 2266677766544 55678888877776666554 56778888888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--H--cCCCCCHhhHHHHHHHHHHcCCH
Q 004470 547 CKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWML--E--KGLKPNAATYNPLIKQHCLRNDM 622 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~--~--~g~~p~~~~~~~l~~~~~~~g~~ 622 (751)
.+..+++.|...|...+... +.+...|-.........|+.-++..+|..-- . .|--|+..-|-.........|+.
T Consensus 861 l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~ 939 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNI 939 (1238)
T ss_pred EecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccch
Confidence 99999999999999988763 4466677666666667788888888887622 2 23445554444444455567766
Q ss_pred HHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHh
Q 004470 623 RTTAKIYKGMCA---------QGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK-GFNLTTSSYN----ALIKGFLK 688 (751)
Q Consensus 623 ~~A~~~~~~m~~---------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~ 688 (751)
++-+...+++-. .+.+.+...|...+...-+.+.+.+|.++..+.+.. ..+.+...|+ .+.+.++.
T Consensus 940 e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~ls 1019 (1238)
T KOG1127|consen 940 EESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELS 1019 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Confidence 654443333321 234446777888888888888888888887776531 1122344444 44556667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 689 RKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.|.++.|..-+..... ..|......- -+++-.|+++++.+.|++++--.
T Consensus 1020 lgefe~A~~a~~~~~~---evdEdi~gt~-l~lFfkndf~~sl~~fe~aLsis 1068 (1238)
T KOG1127|consen 1020 LGEFESAKKASWKEWM---EVDEDIRGTD-LTLFFKNDFFSSLEFFEQALSIS 1068 (1238)
T ss_pred hcchhhHhhhhcccch---hHHHHHhhhh-HHHHHHhHHHHHHHHHHHHhhhc
Confidence 7777766554433211 1122222111 12345678999999999987543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-08 Score=92.02 Aligned_cols=201 Identities=14% Similarity=0.092 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 004470 538 TYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHC 617 (751)
Q Consensus 538 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~ 617 (751)
+...|.-+|...|++..|..-+++.++.. +.+..+|..+...|.+.|..+.|.+.|++.+.... -+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 34556677888888888888888888874 44677888888888888998999888888887632 25677888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 618 LRNDMRTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR 696 (751)
Q Consensus 618 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 696 (751)
..|++++|...|++....-.-+ -..+|..+.-+-.+.|+.+.|...|++.++..+. .+.....+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 9999999999998888742222 2567778888888889999999999999887655 5667778888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 697 ELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
.+++.....+ .++.+.....+..-...|+.+.|-++=..+....+
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9998888766 48888887788888888988888777666655544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-07 Score=94.16 Aligned_cols=239 Identities=17% Similarity=0.108 Sum_probs=167.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-------H
Q 004470 468 TYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTY-------T 540 (751)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~ 540 (751)
-...+.+...+..+++.|.+-+....+.. -+..-++....+|...|.+.+.....++..+.| .-...-| .
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~ 302 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHH
Confidence 35567788888888999999888888775 356666777778888888888888877777665 2222222 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHHc
Q 004470 541 TIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAA-TYNPLIKQHCLR 619 (751)
Q Consensus 541 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~-~~~~l~~~~~~~ 619 (751)
.+..+|.+.++++.|+..|.+.......|+.. .+....+++.+......-. .|... -...-...+.+.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKK 371 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhc
Confidence 24446777788999999999877654444332 2333445555554444332 23321 112225557789
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 620 NDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELF 699 (751)
Q Consensus 620 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 699 (751)
|++..|.+.|.++++.. +.|...|....-+|.+.|.+..|++-.+..++.++. ....|..-+.++....+|++|.+.|
T Consensus 372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 447888999999999999999999998888887543 5557777777778888999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh
Q 004470 700 EEMRRGGLVADREIYYFFVDINFE 723 (751)
Q Consensus 700 ~~~~~~~~~~~~~~~~~l~~~~~~ 723 (751)
++.++.+ +.+.+....+.++...
T Consensus 450 ~eale~d-p~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 450 QEALELD-PSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHhcC-chhHHHHHHHHHHHHH
Confidence 9999875 4444554455555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-06 Score=91.10 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 656 NMKEAWFLHKEMVQKGFNLT----TSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREI 713 (751)
Q Consensus 656 ~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 713 (751)
+..+.++-...|.+....|+ ...|..|+..+....+|..|.+.+++|..+....|..+
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s~ 1367 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLST 1367 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchhc
Confidence 55555666666666543333 35777888888889999999999999888643334333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-08 Score=100.03 Aligned_cols=231 Identities=12% Similarity=-0.020 Sum_probs=146.7
Q ss_pred CCHHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004470 480 GELETANELLHEMCRKGL-QL--NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAH 556 (751)
Q Consensus 480 g~~~~A~~l~~~m~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 556 (751)
+..+.++.-+.+++.... .| ....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345666666666664321 11 23456667777788888888888888887765 556778888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004470 557 ELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG 636 (751)
Q Consensus 557 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 636 (751)
..|++.++.. +.+..+|..+...+...|++++|.+.++...+. .|+..........+...++.++|.+.+++.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888887753 335667777777788888888888888888775 3333221111222345677888888887655432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 637 ITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK---GFN---LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710 (751)
Q Consensus 637 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 710 (751)
.|+...+ .......|+..++ +.++.+.+. .+. .....|..++..+.+.|++++|+..|+++++.+ +||
T Consensus 196 -~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 196 -DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred -CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 3332221 2223345555444 344444421 111 123578888999999999999999999999865 444
Q ss_pred HHHH-HHHHHH
Q 004470 711 REIY-YFFVDI 720 (751)
Q Consensus 711 ~~~~-~~l~~~ 720 (751)
..-+ ..++..
T Consensus 270 ~~e~~~~~~e~ 280 (296)
T PRK11189 270 FVEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHHH
Confidence 4333 334433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-07 Score=88.76 Aligned_cols=343 Identities=10% Similarity=0.019 Sum_probs=209.7
Q ss_pred HHHhhhhC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHH
Q 004470 117 FFDWACLR-REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVL 195 (751)
Q Consensus 117 ~f~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 195 (751)
+|..+... .+..++-+.-++.-+...|++.+|..-++.++..+ |.+-.++.--+.+|
T Consensus 25 ~~e~a~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d----------------------p~~Y~aifrRaT~y 82 (504)
T KOG0624|consen 25 FLEGAESTASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD----------------------PNNYQAIFRRATVY 82 (504)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC----------------------chhHHHHHHHHHHH
Confidence 44444333 34556778888888999999999999999988776 45555666678889
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 004470 196 VEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEA 275 (751)
Q Consensus 196 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 275 (751)
...|+..-|+.-+.++++. +||......--+.+..++|.+++|..-|+.++...+.. |...+|
T Consensus 83 LAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~---------------~~~~ea 145 (504)
T KOG0624|consen 83 LAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN---------------GLVLEA 145 (504)
T ss_pred hhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc---------------chhHHH
Confidence 9999999999999999987 89988777777777678899999999999998875531 112222
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 276 HLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQ 355 (751)
Q Consensus 276 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (751)
.+-+....+ .......+..+...|+...|++....+.+.. +-|...|..-..+|...|+...|+.-++..-+.
T Consensus 146 qskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL 218 (504)
T KOG0624|consen 146 QSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL 218 (504)
T ss_pred HHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 221111111 0011223334556788888888888888763 337777777788888888888888777766655
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 356 GIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYT 435 (751)
Q Consensus 356 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 435 (751)
. ..+..+.--+-..+...|+.+.++...++.++.+ ||....-.. | .++.+..+.++.|.+
T Consensus 219 s-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~---Y---KklkKv~K~les~e~----------- 278 (504)
T KOG0624|consen 219 S-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPF---Y---KKLKKVVKSLESAEQ----------- 278 (504)
T ss_pred c-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHH---H---HHHHHHHHHHHHHHH-----------
Confidence 3 2345556666677778888888888888887754 443221111 1 111122222222211
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004470 436 ALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVT---YTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLC 512 (751)
Q Consensus 436 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~ 512 (751)
....++|.++++-.+...+..+...... +..+-.++...|++.+|++...+..+.. +.|..++.--..+|.
T Consensus 279 -----~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 279 -----AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYL 352 (504)
T ss_pred -----HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHh
Confidence 1223344444444444444432211222 2233344445555666666665555442 113455555555666
Q ss_pred HcCCHHHHHHHHHHHHHCC
Q 004470 513 KAGNILQAVKLMEDMEVAG 531 (751)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~ 531 (751)
-...++.|+.-|+...+.+
T Consensus 353 ~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hhHHHHHHHHHHHHHHhcC
Confidence 5666666666666665543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-07 Score=97.99 Aligned_cols=204 Identities=8% Similarity=-0.080 Sum_probs=124.8
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-ccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGL-VISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYN 260 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (751)
|..+..+..++..+...|+.++|...+.+..+... .++......+.+......|++++|.+.++++.+..|. |...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHH
Confidence 44556777888888888888888877777665421 2344444444444444678888888888888777544 444443
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004470 261 IMIHCLC----RFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLL 336 (751)
Q Consensus 261 ~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 336 (751)
. ...+. ..|..+.+.+.++. .....+........+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 2 22222 23445555555544 111111223344455566677788888888888877764 33456667777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004470 337 CKTSKVVEAETILREMMNQGI-VPDN--VIYTTLIDGFCKMGNVAAAYRLFDEMRG 389 (751)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 389 (751)
...|++++|...+++...... .|+. ..|..+...+...|++++|..++++...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 778888888887777766421 1222 2344566777777777777777777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.6e-06 Score=86.43 Aligned_cols=234 Identities=16% Similarity=0.147 Sum_probs=119.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC---------CccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHH
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNYG---------LVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTA 257 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---------~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 257 (751)
.|+--+..|-+..++++|++.|.+--..| +...+++....-+......|+++.|...|-++...
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~------- 735 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL------- 735 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH-------
Confidence 45555566666666677776665421111 11122222222222222345555555555433211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 004470 258 SYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLC 337 (751)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 337 (751)
-..+.+-....++.+|+.+++.+.+... -..-|..+...|...|+++.|.++|-+. ..++-.|..|.
T Consensus 736 --~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~ 802 (1636)
T KOG3616|consen 736 --IKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYG 802 (1636)
T ss_pred --HHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHh
Confidence 2234445566677777777776665432 2234556666777777777777777532 22455667777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 338 KTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEK 417 (751)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 417 (751)
+.|++++|.++-++.. |.+.....|.+-..-+-+.|++.+|.++|-.+.. |+ ..|..|-+.|..+..++
T Consensus 803 k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred ccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHH
Confidence 7777777776655543 2244455566666666667777777666643322 32 23445555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 004470 418 LFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLH 454 (751)
Q Consensus 418 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 454 (751)
+.++-...- -..|-..+..-+-..|+...|..-|
T Consensus 872 lv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 872 LVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred HHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHH
Confidence 544322110 1122233344444455555554444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-06 Score=89.16 Aligned_cols=434 Identities=17% Similarity=0.132 Sum_probs=229.2
Q ss_pred CCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 235 DGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLI 314 (751)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 314 (751)
.++.+|..+|-+--. -...|..|....++++|+.+-+. .|.+.-...-.+.+.++...|+-++|-++-
T Consensus 545 kkfk~ae~ifleqn~---------te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk 612 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQNA---------TEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK 612 (1636)
T ss_pred hhhhHHHHHHHhccc---------HHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence 456677766643321 12445677777888888876543 233222223345566666778777776543
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 004470 315 EEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGL---- 390 (751)
Q Consensus 315 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 390 (751)
+. +-.+ .+.|..|.+.|....|.+....=.. +..|......+..++.+..-+++|-++|+++...
T Consensus 613 ~s--------dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkal 681 (1636)
T KOG3616|consen 613 ES--------DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKAL 681 (1636)
T ss_pred cc--------cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHH
Confidence 21 2222 3457888888888777654321111 1234444444444444444444444455444321
Q ss_pred -----C-------------CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 004470 391 -----N-------------IIPDLLTY-TAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAF 451 (751)
Q Consensus 391 -----~-------------~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 451 (751)
| .+..+++. ......+...|+++.|+.-|-+.. .....+.+......|.+|+
T Consensus 682 e~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai 752 (1636)
T KOG3616|consen 682 ECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAI 752 (1636)
T ss_pred HHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhH
Confidence 0 00000000 011112223333444333332211 1112334445566777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004470 452 SLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAG 531 (751)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 531 (751)
.+++.+..... -...|..+.+.|...|+++.|.++|.+.- .++-.|..|.+.|++++|.++-.+...
T Consensus 753 ~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~-- 819 (1636)
T KOG3616|consen 753 SILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG-- 819 (1636)
T ss_pred hHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--
Confidence 77777766532 23446667777888888888887775532 234457778888888888777665542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHH
Q 004470 532 FHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNP 611 (751)
Q Consensus 532 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~ 611 (751)
.......|-+-..-+-+.|++.+|.+++-.+. .|+. .|..|-+.|..++.+++..+-... .-..|...
T Consensus 820 ~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~ 887 (1636)
T KOG3616|consen 820 PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKH 887 (1636)
T ss_pred chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHH
Confidence 12334455555556667777777777664432 2332 356677777777777666543211 11244555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---------
Q 004470 612 LIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNAL--------- 682 (751)
Q Consensus 612 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--------- 682 (751)
+..-|-..|++..|.+-|-+.-+ |..-++.|...+-|++|.++-+. .|-. +..-....
T Consensus 888 f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---egg~-n~~k~v~flwaksiggd 954 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EGGA-NAEKHVAFLWAKSIGGD 954 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cccc-cHHHHHHHHHHHhhCcH
Confidence 66667778888888777655433 33445566666667776655432 1111 11111111
Q ss_pred ---------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 683 ---------------IKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 683 ---------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
++-.+..+-++-|..+-+-..+.. ...+...++..+-..|++++|-+.|-++++..
T Consensus 955 aavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 955 AAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 111223333444444433333321 12333445556778888999988888877654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-08 Score=100.38 Aligned_cols=197 Identities=11% Similarity=0.010 Sum_probs=118.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 129 LEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
...++.++.++...|++++|...+.++++.. |.++.+|..++.+|...|++++|.+.|
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~----------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR----------------------PDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4557777778888888888888888887765 667778888888888888888888888
Q ss_pred HHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004470 209 EKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCS 288 (751)
Q Consensus 209 ~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (751)
+++++. .|+.......++.+....|++++|.+.|+++.+..+. +.. ...........++.++|...|++..... .
T Consensus 122 ~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~ 196 (296)
T PRK11189 122 DSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DPY-RALWLYLAESKLDPKQAKENLKQRYEKL-D 196 (296)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-C
Confidence 888876 5655444444444444668888888888887776543 221 1222222334567777777776544321 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---C---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 289 PDVVSFSTIINGYCYLGELQRVLKLIEEMQIKG---L---KPNPYTYNSVVRLLCKTSKVVEAETILREMMNQG 356 (751)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 356 (751)
|+. |. ........|+.+.+ +.++.+.+.. + +....+|..+...+.+.|++++|...|++..+..
T Consensus 197 ~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 197 KEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred ccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222 21 11222334554433 2344433210 0 0122356666666666666666666666666553
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.5e-06 Score=96.90 Aligned_cols=373 Identities=10% Similarity=0.013 Sum_probs=209.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004470 367 LIDGFCKMGNVAAAYRLFDEMRGLNIIPD-LLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAG 445 (751)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 445 (751)
....+...|++.+|.......... +. ..........+...|+++.+..+++.+.......+..........+...|
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 344466677777666554433211 00 00111122334456777776666655421111112222233444456678
Q ss_pred ChhHHHHHHHHHHhCCC------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHH
Q 004470 446 GMKKAFSLHNNMVHMRL------TPN--VVTYTALADGLCKSGELETANELLHEMCRKGLQLNI----YTYNSIVNGLCK 513 (751)
Q Consensus 446 ~~~~A~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~----~~~~~li~~~~~ 513 (751)
++++|...+......-. .+. ......+...+...|++++|...+++..+.-...+. ...+.+...+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 88888888776654210 111 112222334456788888888888887653211121 234555666777
Q ss_pred cCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHH
Q 004470 514 AGNILQAVKLMEDMEVAGF---HP--DTFTYTTIMDAYCKSGEMVKAHELLRDMLDK----GLQ--P-SVVTFNVLMNGF 581 (751)
Q Consensus 514 ~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--p-~~~~~~~li~~~ 581 (751)
.|++++|...+.+.....- .+ ...++..+...+...|++++|...+++..+. +.. + ....+..+...+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 8888888888877654210 11 1234455666777888888888887776542 211 1 223344555666
Q ss_pred HhcCChhHHHHHHHHHHHcC--CCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHH--H--HHHHHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEKG--LKP--NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG--ITPDGN--T--YNILLQGH 651 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g--~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~--~--~~~li~~~ 651 (751)
...|++++|...+.+..... ..+ ....+..+...+...|+.++|.+.++++.... ...... . ....+..+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 67788888888887775531 112 12334445566778888888888887775421 111110 0 01122344
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHh
Q 004470 652 CKARNMKEAWFLHKEMVQKGFNLT---TSSYNALIKGFLKRKKYLEARELFEEMRRG----GLVAD-REIYYFFVDINFE 723 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~ 723 (751)
...|+.+.|...+........... ...+..+..++...|++++|...++++... |...+ ..++..++.++.+
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 557888888888766543211111 112345677778888888888888887652 22221 2455566778888
Q ss_pred cCChhHHHHHHHHHHHcCC
Q 004470 724 EGNTEITLELCDAAIECYL 742 (751)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~ 742 (751)
.|+.++|.+.+.++++...
T Consensus 744 ~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 744 QGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred cCCHHHHHHHHHHHHHHhC
Confidence 8888888888888887653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.2e-07 Score=84.81 Aligned_cols=191 Identities=14% Similarity=0.094 Sum_probs=114.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 004470 511 LCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDG 590 (751)
Q Consensus 511 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 590 (751)
+...|+...|+.....+.+.. +-|+..|..-..+|...|++..|+.-++...+.. ..+..++--+-..+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHH
Confidence 344556666666666665543 4455555555666666666666665555554432 33444444555555556666666
Q ss_pred HHHHHHHHHcCCCCCHhh----HHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhc
Q 004470 591 EKLLKWMLEKGLKPNAAT----YNPL---------IKQHCLRNDMRTTAKIYKGMCAQGITPDGNT---YNILLQGHCKA 654 (751)
Q Consensus 591 ~~l~~~~~~~g~~p~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~ 654 (751)
+...++.++. .||... |..| +......+++.++++-.+...+....-.... +..+-.++...
T Consensus 243 L~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 243 LKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 6666655553 344321 1111 1113456677777777777776532211222 33445566677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 655 RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 655 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
|++.+|++...+.++..+. |..++-.-+.+|.-...+++|+.-|+++.+.+
T Consensus 321 ~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred CCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 8888888888888876433 57788888888888888888888888888754
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.08 E-value=9e-07 Score=93.15 Aligned_cols=305 Identities=12% Similarity=-0.013 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004470 433 VYTALIDGYCKAGGMKKAFSLHNNMVHMRL-TPNV-VTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNG 510 (751)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~ 510 (751)
.+..+...+...|+.+.+...+.+..+... .++. .........+...|++++|.+.+++..+..+ .+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHH
Confidence 344444444455555554444444333211 1111 1111223334556667777777766665532 23333331 111
Q ss_pred HH----HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004470 511 LC----KAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGM 586 (751)
Q Consensus 511 ~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 586 (751)
+. ..+..+.+.+.+.... ...+........+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 11 2344444444444311 1112223444455566777777777777777777664 4455666777777777778
Q ss_pred hhHHHHHHHHHHHcCC-CCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHH
Q 004470 587 IEDGEKLLKWMLEKGL-KPNA--ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGI-TPDGNTY-N--ILLQGHCKARNMKE 659 (751)
Q Consensus 587 ~~~A~~l~~~~~~~g~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~ 659 (751)
+++|...+++...... .|+. ..|..+...+...|+.++|.+++++...... .+..... + .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 8888877777766422 1222 2344566677778888888888877754321 1111111 1 22333334443332
Q ss_pred HHHH--H-HHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCh
Q 004470 660 AWFL--H-KEMVQKGF-NLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLV--------ADREIYYFFVDINFEEGNT 727 (751)
Q Consensus 660 A~~~--~-~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~ 727 (751)
+.+. + ........ ..........+.++...|+.++|...++.+...... .........+..+...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1 11111100 111222235677778899999999999988763212 0123333445677899999
Q ss_pred hHHHHHHHHHHHcC
Q 004470 728 EITLELCDAAIECY 741 (751)
Q Consensus 728 ~~A~~~~~~~~~~~ 741 (751)
++|.+.+.++++..
T Consensus 324 ~~A~~~L~~al~~a 337 (355)
T cd05804 324 ATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.1e-08 Score=89.29 Aligned_cols=188 Identities=14% Similarity=0.039 Sum_probs=95.7
Q ss_pred cCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhh
Q 004470 108 RSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHV 187 (751)
Q Consensus 108 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (751)
++|+..|..-++.+.+++|.+..++..+++++...|..+.|..-++++++.. |.+-.|
T Consensus 48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~----------------------p~~GdV 105 (250)
T COG3063 48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA----------------------PNNGDV 105 (250)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC----------------------CCccch
Confidence 4555555555555555555555555555555555555555555555555543 344445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (751)
.+..+.-+|.+|++++|...|++++..-..+.......-++.+..+.|+.+.|...|++..+..+. +..+.-.+.....
T Consensus 106 LNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~ 184 (250)
T COG3063 106 LNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHY 184 (250)
T ss_pred hhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHH
Confidence 555555555555555555555555543222222111222222333455555555555555555433 3444445555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 268 RFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQI 319 (751)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 319 (751)
+.|++-.|..+++.....+. ++..+.-..|..--..|+.+.+-+.=..+.+
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 185 KAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred hcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555554443 4555555555555555555555444444433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.1e-07 Score=83.54 Aligned_cols=305 Identities=11% Similarity=0.019 Sum_probs=199.7
Q ss_pred ChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHH
Q 004470 110 DYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFD 189 (751)
Q Consensus 110 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 189 (751)
....|.+....-..+.|.+..+...+++.+....+|..|...++++.... |.-..--.
T Consensus 25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~----------------------P~~~qYrl 82 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH----------------------PELEQYRL 82 (459)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----------------------hHHHHHHH
Confidence 44566666666666677788889999999999999999999998876543 11111112
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHH-hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHh
Q 004470 190 IFFQVLVEARKLNEARKLFEKLLNYGLVISVD-SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCR 268 (751)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 268 (751)
--++.+.+.+.+.+|+.+...|... |... .+..+-+++....+++..++.+.++....| +..+.+-..-...+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 2467788999999999999988653 3332 233333444446788888888888887543 44555556666789
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc----HHHHHHHHHhcCCHHH
Q 004470 269 FGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYT----YNSVVRLLCKTSKVVE 344 (751)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g~~~~ 344 (751)
.|++++|.+-|+...+.+--.....||..+. ..+.|+++.|++...+++++|++..+.. -+..+++- ..|+
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN--- 231 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN--- 231 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc---
Confidence 9999999999999887654455677876654 4577999999999999999987633221 01111100 0010
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 345 AETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLN-IIPDLLTYTAIICGFCLTGKMVEAEKLFHEML 423 (751)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 423 (751)
-..+.. .+ =+.++|.-...+.+.|+++.|.+.+-+|..+. -..|.+|...+.-. -..+++.+..+-+.-++
T Consensus 232 t~~lh~----Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 232 TLVLHQ----SA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLL 303 (459)
T ss_pred hHHHHH----HH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHH
Confidence 000111 00 12245555556778899999999998886543 23456666554321 23455666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004470 424 GRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNN 456 (751)
Q Consensus 424 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (751)
..+. -...||..++-.||+..-++.|-.++.+
T Consensus 304 ~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 304 QQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6533 3567888888899999888888887765
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.9e-05 Score=80.98 Aligned_cols=225 Identities=14% Similarity=0.025 Sum_probs=135.5
Q ss_pred hcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCH
Q 004470 141 AAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISV 220 (751)
Q Consensus 141 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 220 (751)
.+++|..|.+.+.++++.. |..+.+--.=+-.+.|.|+.++|..+++..-.. .++.
T Consensus 21 d~~qfkkal~~~~kllkk~----------------------Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~--~~~D 76 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH----------------------PNALYAKVLKALSLFRLGKGDEALKLLEALYGL--KGTD 76 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC----------------------CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC--CCCc
Confidence 4677888888888877764 444444444455677889999999887776544 3433
Q ss_pred HhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004470 221 DSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIING 300 (751)
Q Consensus 221 ~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 300 (751)
......+..+++..|..++|..+|+.+.... |+......+-.+|.|.+.+.+-.+.--+|-+ .++-+...+=++++.
T Consensus 77 ~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 77 DLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISL 153 (932)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHH
Confidence 3344456666668889999999999888774 4566666777788887776654433333333 122234444444444
Q ss_pred HHhcC-C---------HHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHH
Q 004470 301 YCYLG-E---------LQRVLKLIEEMQIKG-LKPNPYTYNSVVRLLCKTSKVVEAETIL-REMMNQGIVPDNVIYTTLI 368 (751)
Q Consensus 301 ~~~~g-~---------~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~~~~~li 368 (751)
+.+.- . ..-|.+.++.+.+.+ ---+..-...-...+...|++++|.+++ ....+.-..-+...-+.-+
T Consensus 154 ilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~ 233 (932)
T KOG2053|consen 154 ILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKL 233 (932)
T ss_pred HHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 44321 1 223445555555443 1111122222334555678888888888 3343332233344445666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCC
Q 004470 369 DGFCKMGNVAAAYRLFDEMRGLNI 392 (751)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m~~~~~ 392 (751)
+.+.+.+++.+..++-.++..+|.
T Consensus 234 dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 234 DLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHhcChHHHHHHHHHHHHhCC
Confidence 777788888888888888877764
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-06 Score=81.82 Aligned_cols=291 Identities=13% Similarity=0.094 Sum_probs=187.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHH-HHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNI-MIHCL 266 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~ 266 (751)
|+..+..+.+..++++|++++..-.+. .|.......+|+-++....++..|...|++....-|. ..-|.. -..++
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHHH
Confidence 556666677888888888888877776 5666666777777776677788888888888766433 333322 24566
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHH
Q 004470 267 CRFGKIKEAHLLLLQMELRGCSPDVVSFSTIING--YCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVE 344 (751)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 344 (751)
.+.+.+.+|+.+...|.+. |+...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|++++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 7888889999988888763 333322222222 335678888888888766432 45555555566678899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-------------CCHH--------------
Q 004470 345 AETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNII-------------PDLL-------------- 397 (751)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------p~~~-------------- 397 (751)
|.+-|....+.|--....+||.-+. ..+.|+.+.|++...++.++|++ ||+.
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 9999988877543334556765544 44678889999999988887654 1211
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004470 398 -TYTAIICGFCLTGKMVEAEKLFHEMLGR-GLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADG 475 (751)
Q Consensus 398 -~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 475 (751)
.+|.-...+.+.|+++.|.+.+.+|.-+ ....|++|...+.-.- ..+++.+..+-+.-+.+..+ -...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 1222223445667788887777777544 2234566655443221 23445555555555555544 345677777778
Q ss_pred HHhcCCHHHHHHHHHH
Q 004470 476 LCKSGELETANELLHE 491 (751)
Q Consensus 476 ~~~~g~~~~A~~l~~~ 491 (751)
||+..-++.|.+++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 8888777777777654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.5e-06 Score=96.91 Aligned_cols=337 Identities=10% Similarity=0.052 Sum_probs=206.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHH
Q 004470 370 GFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGL------EPD--EIVYTALIDGY 441 (751)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~p~--~~~~~~li~~~ 441 (751)
.+...|+++.+...++.+.......+..........+...|++++|..++......-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3455677777777766552211111122223334455677889998888887654310 111 11222334455
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHH
Q 004470 442 CKAGGMKKAFSLHNNMVHMRLTPNV----VTYTALADGLCKSGELETANELLHEMCRK----GLQ-LNIYTYNSIVNGLC 512 (751)
Q Consensus 442 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-~~~~~~~~li~~~~ 512 (751)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |.. .....+..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6788999999998887763212121 24455666778889999999888887643 111 11234455666778
Q ss_pred HcCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHH
Q 004470 513 KAGNILQAVKLMEDMEV----AGFH--P-DTFTYTTIMDAYCKSGEMVKAHELLRDMLDK--GLQP--SVVTFNVLMNGF 581 (751)
Q Consensus 513 ~~g~~~~A~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p--~~~~~~~li~~~ 581 (751)
..|++++|...+++... .+.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999988887654 2211 1 2233445566677789999999888877542 1112 233444566677
Q ss_pred HhcCChhHHHHHHHHHHHcCCCC-CHhhH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEKGLKP-NAATY-----NPLIKQHCLRNDMRTTAKIYKGMCAQGITPD---GNTYNILLQGHC 652 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g~~p-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~ 652 (751)
...|+.++|...+.......... ....+ ...+..+...|+.+.|.+++........... ...+..+...+.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78899999999888875431111 11111 1122344567889998888776554211111 111345677788
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 653 KARNMKEAWFLHKEMVQK----GFNLT-TSSYNALIKGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
..|+.++|...++++... |...+ ..++..+..++.+.|+.++|...+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999887763 22222 2456677888889999999999999998754
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.89 E-value=0.00028 Score=76.92 Aligned_cols=519 Identities=14% Similarity=0.095 Sum_probs=291.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHH-hCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 004470 196 VEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLS-NTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKE 274 (751)
Q Consensus 196 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 274 (751)
...+++.+|+....++.+. .|+.... .++.++. .+.|+.++|...++.....+.. |..|...+-.+|-..|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~~a-~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNALYA-KVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcHHH-HHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 5678899999999999887 6776544 4444443 4679999999888887776655 89999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC----------HHH
Q 004470 275 AHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSK----------VVE 344 (751)
Q Consensus 275 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~ 344 (751)
|..+|++.... .|+......+..+|.+.+++.+-.+.--+|-+. ++-+.+.+=+++..+...-. ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999998765 377777888889999999988776666666553 44466666666665554211 234
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 345 AETILREMMNQG-IVPDNVIYTTLIDGFCKMGNVAAAYRLFD-EMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEM 422 (751)
Q Consensus 345 A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 422 (751)
|.+.++.+.+.+ ..-+..-.......+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 667777777654 22222223333445667889999999983 3333333334445556667788889999999998888
Q ss_pred HHCCCCCCHHHHHHHHHHH----------------HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHH
Q 004470 423 LGRGLEPDEIVYTALIDGY----------------CKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADG---LCKSGELE 483 (751)
Q Consensus 423 ~~~~~~p~~~~~~~li~~~----------------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~ 483 (751)
+..|.. | |...++.+ ...+..+...+...+...... ...|-+-+.. +-.-|+.+
T Consensus 253 l~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~---Rgp~LA~lel~kr~~~~gd~e 325 (932)
T KOG2053|consen 253 LEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKS---RGPYLARLELDKRYKLIGDSE 325 (932)
T ss_pred HHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccc---cCcHHHHHHHHHHhcccCChH
Confidence 887533 2 22222211 112223333333333322211 1122222222 23446666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHHcCC-----
Q 004470 484 TANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTF-------TYTTIMDAYCKSGE----- 551 (751)
Q Consensus 484 ~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~----- 551 (751)
++.-.|-+- -|..| .|..=+..|...=..+.-..++...... .++.. -+...+..-.-.|.
T Consensus 326 e~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ 398 (932)
T KOG2053|consen 326 EMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLP 398 (932)
T ss_pred HHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCC
Confidence 655444322 12121 1111122222222233333344333322 11111 01111111111221
Q ss_pred HHHHHHHHHHHH---hCC------CCCCH---------HHHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHhhHH
Q 004470 552 MVKAHELLRDML---DKG------LQPSV---------VTFNVLMNGFCMSGMIE---DGEKLLKWMLEKGLKPNAATYN 610 (751)
Q Consensus 552 ~~~A~~~~~~~~---~~~------~~p~~---------~~~~~li~~~~~~g~~~---~A~~l~~~~~~~g~~p~~~~~~ 610 (751)
-+.-..++.+.. ++| +-|+. .+-+.|++.+-+.++.. +|+-+++.-.... +-|..+-.
T Consensus 399 ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KL 477 (932)
T KOG2053|consen 399 ADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKL 477 (932)
T ss_pred hHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHH
Confidence 222233332221 222 12222 23466777888877655 3444444444431 22444556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 611 PLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK 690 (751)
Q Consensus 611 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 690 (751)
.+++.|+-.|-+..|.++|+.+.-+.+..|..-|- +..-+...|++..+...++.....--..-..+-..++ .-.+.|
T Consensus 478 lLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~-~AYr~g 555 (932)
T KOG2053|consen 478 LLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIA-LAYRRG 555 (932)
T ss_pred HHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHH-HHHHcC
Confidence 77888988899999999999887776776665553 3455667788888888888776531110112222233 334567
Q ss_pred CHHHHHHHHHH---HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 691 KYLEARELFEE---MRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 691 ~~~~A~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
.|.+..++..- +..........+-+.....++..++.++-.+.++.+-
T Consensus 556 ~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 556 AYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 77665554322 2111111122333455566777787777776666554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.0002 Score=73.57 Aligned_cols=186 Identities=16% Similarity=0.155 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004470 447 MKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSG---ELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKL 523 (751)
Q Consensus 447 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 523 (751)
.+++..++++....-...+..+|..+.+.--..- ..+...+.++++...-..--..+|..+++...+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455556665554333334444444443222222 2555566666665542222334677778888888888999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 524 MEDMEVAGFHP-DTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL 602 (751)
Q Consensus 524 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~ 602 (751)
|.++.+.+..+ ++.++++++..|| .++..-|.++|+.-++. ...+..--...++-+...|+-..|..+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99998877666 7778888888776 57788899999876654 344555556677777888888999999999988866
Q ss_pred CCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 603 KPNA--ATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 603 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
.||. .+|..++.--..-|++..+.++-+++..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6553 6889999888889999988888877665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-07 Score=93.83 Aligned_cols=149 Identities=17% Similarity=0.136 Sum_probs=81.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----HcC
Q 004470 545 AYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHC----LRN 620 (751)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~----~~g 620 (751)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|.. ...+..++. ...
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCch
Confidence 344556666665555431 24455555566666666666666666666543 22322 222222221 122
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 004470 621 DMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKY-LEARELF 699 (751)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 699 (751)
++.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.++.+.++. ++.+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 466677777776543 3456666777777777777777777777776665544 566666666666666666 5556666
Q ss_pred HHHHH
Q 004470 700 EEMRR 704 (751)
Q Consensus 700 ~~~~~ 704 (751)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 66655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.5e-07 Score=91.35 Aligned_cols=237 Identities=10% Similarity=-0.041 Sum_probs=166.0
Q ss_pred CccccCCchhHHHHHHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhH
Q 004470 89 KPFESKFRSDHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFT 168 (751)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 168 (751)
.|+..+.+|-..-..+.+ .++...|.=+|+-+.++.|.|.++++.++.+.....+=..|+.-|.+++..+
T Consensus 280 Np~~~~pdPf~eG~~lm~-nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--------- 349 (579)
T KOG1125|consen 280 NPYIDHPDPFKEGCNLMK-NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD--------- 349 (579)
T ss_pred CcccCCCChHHHHHHHHh-cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---------
Confidence 455555566555444443 4566677778999999999999999999999998888889999999998887
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHH-----HH---HHHHhCCCCHHHH
Q 004470 169 HFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNL-----FL---SRLSNTCDGLRMV 240 (751)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-----ll---~~l~~~~~~~~~a 240 (751)
|.+-.+...|+..|...|.-.+|++.++.-+... |.-..... .. +.+. ....+...
T Consensus 350 -------------P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~-~~~~l~~i 413 (579)
T KOG1125|consen 350 -------------PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK--PKYVHLVSAGENEDFENTKSFL-DSSHLAHI 413 (579)
T ss_pred -------------CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--ccchhccccCccccccCCcCCC-CHHHHHHH
Confidence 7788889999999999999999999999886652 21100000 00 0110 11223445
Q ss_pred HHHHHhchhc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 241 VKSFTEFPEL-GICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQI 319 (751)
Q Consensus 241 ~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 319 (751)
.+.|-++... +..+|+.++..|.-.|--.|++++|++.|+..+...+ -|...||.|...+....+.++|+..|.+.++
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 5555555433 3235777777777778888888888888888776543 3567788888888888888888888888877
Q ss_pred CCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 320 KGLKPN-PYTYNSVVRLLCKTSKVVEAETILREMMN 354 (751)
Q Consensus 320 ~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (751)
. +|+ +.....|.-.|...|.+++|.+.|-..+.
T Consensus 493 L--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 493 L--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred c--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 5 454 44455566677788888888877766543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-07 Score=94.64 Aligned_cols=219 Identities=14% Similarity=0.087 Sum_probs=120.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004470 475 GLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVK 554 (751)
Q Consensus 475 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 554 (751)
-+.+.|++.+|.-.|+..+++++. +...|..|.......++-..|+..+.+..+.. +.+......|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 356778888888888888777544 66777777777777777788888888887765 5567777777778888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH-----------HHhcCChhHHHHHHHHHH-HcCCCCCHhhHHHHHHHHHHcCCH
Q 004470 555 AHELLRDMLDKGLQPSVVTFNVLMNG-----------FCMSGMIEDGEKLLKWML-EKGLKPNAATYNPLIKQHCLRNDM 622 (751)
Q Consensus 555 A~~~~~~~~~~~~~p~~~~~~~li~~-----------~~~~g~~~~A~~l~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~ 622 (751)
|.+.++..+....+ |..+... +.....+....++|-++. +.+..+|..+...|.-.|...|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 88888877765321 1111110 000011122222222222 223234444444555455555555
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 623 RTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEE 701 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 701 (751)
++|.+.|+.++.. .| |...||.|...+....+.++|+..|.++++..+. =+.+...|+-.|...|.|+||.+.|-.
T Consensus 447 draiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 5555555555542 23 3334555555555555555555555555543211 112333444444555555555555444
Q ss_pred HH
Q 004470 702 MR 703 (751)
Q Consensus 702 ~~ 703 (751)
++
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 44
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-07 Score=93.47 Aligned_cols=250 Identities=14% Similarity=0.113 Sum_probs=162.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004470 476 LCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKA 555 (751)
Q Consensus 476 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 555 (751)
+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777775554 222222223344556677888888877544 3333333 56666665555554444556666
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 556 HELLRDMLDKGLQP-SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 556 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
..-+++.......+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66665554433332 3333333334566789999999988643 3566677788999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHH--hc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 635 QGITPDGNTYNILLQGHC--KA--RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710 (751)
Q Consensus 635 ~g~~p~~~~~~~li~~~~--~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 710 (751)
. ..|.. ...+..++. .. +++.+|..+|+++.+. +.+++.+.+.++.+....|++++|.++++++++.+ +.|
T Consensus 160 ~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~ 234 (290)
T PF04733_consen 160 I--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND 234 (290)
T ss_dssp C--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred c--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence 4 34433 334444433 23 3699999999998765 56689999999999999999999999999998765 557
Q ss_pred HHHHHHHHHHHHhcCCh-hHHHHHHHHHHHcC
Q 004470 711 REIYYFFVDINFEEGNT-EITLELCDAAIECY 741 (751)
Q Consensus 711 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 741 (751)
+.+...++-+....|+. +.+.+++.++....
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 78888888888888887 66777887766543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00042 Score=71.29 Aligned_cols=428 Identities=12% Similarity=0.051 Sum_probs=237.5
Q ss_pred hhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 004470 248 PELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPY 327 (751)
Q Consensus 248 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 327 (751)
++.+|- |..+|+.||+-+..+ .++++.+.++++... ++-....|..-|.+-.+..+++...++|.+...+-+ +..
T Consensus 13 ie~nP~-di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlD 87 (656)
T KOG1914|consen 13 IEENPY-DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLD 87 (656)
T ss_pred HhcCCc-cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHh
Confidence 344443 889999999877666 999999999998764 334567888999999999999999999999877633 555
Q ss_pred cHHHHHHHHHh-cCCHHH----HHHHHHHH-HHCCCCC-CHHHHHHHHHH---------HHHcCCHHHHHHHHHHHHhCC
Q 004470 328 TYNSVVRLLCK-TSKVVE----AETILREM-MNQGIVP-DNVIYTTLIDG---------FCKMGNVAAAYRLFDEMRGLN 391 (751)
Q Consensus 328 ~~~~li~~~~~-~g~~~~----A~~~~~~m-~~~g~~p-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~~ 391 (751)
.|...+..-.+ .|+... ..+.|+-. .+.|+.+ +...|+..+.- |..+.+++...++|.++...-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 56655544332 233222 22233332 2334332 22344444432 233345555666666665431
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh--CCCCCC----
Q 004470 392 IIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVH--MRLTPN---- 465 (751)
Q Consensus 392 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~---- 465 (751)
+..=...|+-.. . +++.+ |..|-.-++. -+...+..|.++++++.. .|+..+
T Consensus 168 m~nlEkLW~DY~----~---fE~~I-------------N~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~v 225 (656)
T KOG1914|consen 168 MHNLEKLWKDYE----A---FEQEI-------------NIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAV 225 (656)
T ss_pred cccHHHHHHHHH----H---HHHHH-------------HHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCC
Confidence 110011111111 0 11111 1111111110 011223334444444321 111100
Q ss_pred -----------HHHHHHHHHHHHhcCCH--------HHHHHHHHHH-HHcCCCCCHHHH-HH----HHHHHHHcCC----
Q 004470 466 -----------VVTYTALADGLCKSGEL--------ETANELLHEM-CRKGLQLNIYTY-NS----IVNGLCKAGN---- 516 (751)
Q Consensus 466 -----------~~~~~~li~~~~~~g~~--------~~A~~l~~~m-~~~g~~~~~~~~-~~----li~~~~~~g~---- 516 (751)
+..|..+|..--..+-- ....-.+++. .--+..|+.... .. .-+.+...|+
T Consensus 226 p~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a 305 (656)
T KOG1914|consen 226 PPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDA 305 (656)
T ss_pred CCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccc
Confidence 01122222211111100 0011111111 111222222210 11 1112233333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 004470 517 ---ILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKS---GEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDG 590 (751)
Q Consensus 517 ---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 590 (751)
.+++..+++.....-...+..+|..+.+.--.. ...+...+.++++...-...-..+|..+++.-.+..-++.|
T Consensus 306 ~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaa 385 (656)
T KOG1914|consen 306 KSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAA 385 (656)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHH
Confidence 345555665554432233444444443322111 13556666777766432222345688888888888889999
Q ss_pred HHHHHHHHHcCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 591 EKLLKWMLEKGLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 591 ~~l~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
..+|.++.+.+..+ ++.++++++..|| .++.+-|.++|+--++. ...++......++-+...|+-..|..+|++.+.
T Consensus 386 R~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 386 RKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 99999999987777 7778888888775 67889999999966553 233455556678888899999999999999998
Q ss_pred CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 670 KGFNLT--TSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 670 ~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.++.++ ..+|..++.--..-|+...++++-+++..
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 866555 46899999999999999999999888765
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-05 Score=81.80 Aligned_cols=217 Identities=8% Similarity=-0.012 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh--hHHH
Q 004470 515 GNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSG-EMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMI--EDGE 591 (751)
Q Consensus 515 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~A~ 591 (751)
++.++|+.+.+++++.. +-+..+|+.-...+.+.| ++++++..++++.+.+ +.+..+|+.....+.+.|+. +++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 34444444444444432 222333333333333444 3455555555554432 22333444333333333331 3445
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHH
Q 004470 592 KLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKA---RN----MKEAWFLH 664 (751)
Q Consensus 592 ~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~----~~~A~~~~ 664 (751)
.+++++++...+ +..+|+.....+...|+++++++.++++++.+. -|...|+.....+.+. |. .++++...
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 555555544222 444555555555555555555555555555432 2334444443333332 11 23455556
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------
Q 004470 665 KEMVQKGFNLTTSSYNALIKGFLKR----KKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG--------------- 725 (751)
Q Consensus 665 ~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------- 725 (751)
.+++...+. |...|+.+...+... ++..+|.+.+.+..+.+ +.+......|++.|++..
T Consensus 207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 566665544 566666666666552 33455666666655533 334555556666665432
Q ss_pred ---ChhHHHHHHHHH
Q 004470 726 ---NTEITLELCDAA 737 (751)
Q Consensus 726 ---~~~~A~~~~~~~ 737 (751)
..++|.++++.+
T Consensus 285 ~~~~~~~a~~~~~~l 299 (320)
T PLN02789 285 ELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccHHHHHHHHHHH
Confidence 346777777776
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.4e-06 Score=82.84 Aligned_cols=215 Identities=10% Similarity=0.024 Sum_probs=136.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCC-CHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCD-GLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
+++.+-.++...++.++|+.++.++++. .|+..+.=..-+.+....| .+++++..++++.+..+. +..+|+.....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 3344444556667788888888888876 5666544333333333445 567888888888877665 66667766555
Q ss_pred HHhcCCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc---C
Q 004470 266 LCRFGKI--KEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKT---S 340 (751)
Q Consensus 266 ~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g 340 (751)
+.+.|+. ++++.+++++.+... -|..+|+.....+...|+++++++.++++.+.+.. |..+|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence 5566653 667778877776553 46777887777777888888888888888877544 566666655555443 2
Q ss_pred CH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004470 341 KV----VEAETILREMMNQGIVPDNVIYTTLIDGFCKM----GNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCL 408 (751)
Q Consensus 341 ~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 408 (751)
+. +++.+...+++... +-|..+|+.+...+... ++..+|.+.+.+....++. +......|+..|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 22 34555555555543 44666777777766652 3345566666666554432 55566666666664
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00018 Score=81.11 Aligned_cols=223 Identities=8% Similarity=0.045 Sum_probs=129.6
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHH
Q 004470 125 REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEA 204 (751)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 204 (751)
.+.+..++..++..+...+++++|..+++..+... |..+..|..++..+.+.+++++|
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~----------------------P~~i~~yy~~G~l~~q~~~~~~~ 84 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH----------------------KKSISALYISGILSLSRRPLNDS 84 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------------CcceehHHHHHHHHHhhcchhhh
Confidence 46677888888888878888888888888776654 56666777777777777777777
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004470 205 RKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 205 ~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (751)
..+ .+... .+. ..++..+..++..+.+. ..+..++-.|+.+|-+.|+.++|..+++++.+
T Consensus 85 ~lv--~~l~~--~~~--------------~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~ 144 (906)
T PRK14720 85 NLL--NLIDS--FSQ--------------NLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVK 144 (906)
T ss_pred hhh--hhhhh--ccc--------------ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 666 33322 111 12222222222333332 12444556666666666666666666666666
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC---------
Q 004470 285 RGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQ--------- 355 (751)
Q Consensus 285 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------- 355 (751)
.. +-|....|.+...|... ++++|.+++.+.... +....++.++.+++.++...
T Consensus 145 ~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~ 207 (906)
T PRK14720 145 AD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFL 207 (906)
T ss_pred cC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHH
Confidence 55 24566666666666666 666666666665443 22233334444444444333
Q ss_pred ----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004470 356 ----------GIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFC 407 (751)
Q Consensus 356 ----------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 407 (751)
|..--+.++-.+-..|-+.++++++..+++.+.+.... |.....-++.+|.
T Consensus 208 ~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 208 RIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22222334444556666677777777777777766544 5555666665554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-06 Score=97.87 Aligned_cols=163 Identities=10% Similarity=-0.031 Sum_probs=137.7
Q ss_pred ChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHH
Q 004470 110 DYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFD 189 (751)
Q Consensus 110 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 189 (751)
.|..+|.-..-...+.+++.+++..++.+....|++++|..+++.++... |.+..++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~----------------------Pd~~~a~~ 124 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF----------------------PDSSEAFI 124 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC----------------------CCcHHHHH
Confidence 45555544443444567779999999999999999999999999998765 77788899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhc
Q 004470 190 IFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRF 269 (751)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 269 (751)
.++.++.+.+++++|+..+++.+.. .|+.......++.++.+.|++++|..+|+++...++. +..++..+...+.+.
T Consensus 125 ~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 125 LMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRR 201 (694)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHc
Confidence 9999999999999999999999988 7999988888888888899999999999999986543 688999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004470 270 GKIKEAHLLLLQMELRGCSPDVVSFSTII 298 (751)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~p~~~~~~~li 298 (751)
|+.++|...|++..+.- .|.+..|+.++
T Consensus 202 G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 202 GALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred CCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 99999999999987642 25556665544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.5e-08 Score=62.32 Aligned_cols=32 Identities=31% Similarity=0.557 Sum_probs=16.8
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 251 GICWNTASYNIMIHCLCRFGKIKEAHLLLLQM 282 (751)
Q Consensus 251 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (751)
|+.||+++||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.8e-08 Score=62.17 Aligned_cols=32 Identities=47% Similarity=1.124 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 286 GCSPDVVSFSTIINGYCYLGELQRVLKLIEEM 317 (751)
Q Consensus 286 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 317 (751)
|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.8e-06 Score=82.51 Aligned_cols=186 Identities=8% Similarity=-0.054 Sum_probs=116.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCCh---hhHHHHHHHHHhcCChhH
Q 004470 127 PILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDP---HVFDIFFQVLVEARKLNE 203 (751)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~ 203 (751)
.....+...+..+...|++++|...+++++... |.++ .++..++.+|.+.|++++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~----------------------p~~~~~~~a~~~la~~~~~~~~~~~ 88 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY----------------------PFSPYAEQAQLDLAYAYYKSGDYAE 88 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCchhHHHHHHHHHHHHHhcCCHHH
Confidence 356677788888888889999988888877654 2222 466778888889999999
Q ss_pred HHHHHHHHHhCCCccCHHh---HHHHHHHHHhCC--------CCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCH
Q 004470 204 ARKLFEKLLNYGLVISVDS---CNLFLSRLSNTC--------DGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKI 272 (751)
Q Consensus 204 A~~~~~~~~~~g~~p~~~~---~~~ll~~l~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 272 (751)
|...|+++++. .|+... ....++...... |+.++|.+.|+++....+. +...+..+.... ..
T Consensus 89 A~~~~~~~l~~--~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~----~~ 161 (235)
T TIGR03302 89 AIAAADRFIRL--HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD----YL 161 (235)
T ss_pred HHHHHHHHHHH--CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH----HH
Confidence 99999988876 333221 122233332222 6677888888888776544 333332221110 00
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 004470 273 KEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGL--KPNPYTYNSVVRLLCKTSKVVEAETILR 350 (751)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (751)
.. ... .....+...+.+.|++++|+..+++..+... +.....+..+...+.+.|++++|...++
T Consensus 162 ~~------~~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 162 RN------RLA--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred HH------HHH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 00 000 0112455567778888888888888776521 1224567778888888888888888877
Q ss_pred HHHHC
Q 004470 351 EMMNQ 355 (751)
Q Consensus 351 ~m~~~ 355 (751)
.+...
T Consensus 228 ~l~~~ 232 (235)
T TIGR03302 228 VLGAN 232 (235)
T ss_pred HHHhh
Confidence 77664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.2e-06 Score=77.18 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=114.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCH
Q 004470 543 MDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDM 622 (751)
Q Consensus 543 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 622 (751)
+..|...|+++......+.+... . ..+...++.+++...++..++.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 45678889888875554333211 0 01223567778888888777764 34777888888888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 623 RTTAKIYKGMCAQGITPDGNTYNILLQGH-CKARN--MKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELF 699 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 699 (751)
++|...|++..+.. +.+...+..+..++ ...|+ .++|.++++++++.++. +...+..++..+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999888854 23677777777764 56676 58999999999988766 7788888888999999999999999
Q ss_pred HHHHHCCCCCCHHHH
Q 004470 700 EEMRRGGLVADREIY 714 (751)
Q Consensus 700 ~~~~~~~~~~~~~~~ 714 (751)
+++++.. +|+..-+
T Consensus 168 ~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 168 QKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHhhC-CCCccHH
Confidence 9998864 5555443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-06 Score=89.75 Aligned_cols=219 Identities=15% Similarity=0.123 Sum_probs=136.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 464 PNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIM 543 (751)
Q Consensus 464 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 543 (751)
|--..-..+...+.+.|-...|..+++++ ..|...|.+|+..|+..+|..+..+..++ +||...|..++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 33334445566666677777777666553 35666677777777777777777666663 57777777766
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHH
Q 004470 544 DAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMR 623 (751)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 623 (751)
+......-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.. .....+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 6666666666666666654322 11222222234567777777776666542 223455666666666677777
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 624 TTAKIYKGMCAQGITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEM 702 (751)
Q Consensus 624 ~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 702 (751)
.|.+.|...... .|| ...||.+-.+|.+.|+-.+|...+.++.+.+.. +...|....-...+.|.+++|.+.+.++
T Consensus 537 ~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 777777766652 443 555777777777777777777777777766533 5556666666666777777777777776
Q ss_pred HH
Q 004470 703 RR 704 (751)
Q Consensus 703 ~~ 704 (751)
.+
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 65
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.2e-06 Score=80.09 Aligned_cols=188 Identities=12% Similarity=0.068 Sum_probs=127.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--h
Q 004470 533 HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSV---VTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA--A 607 (751)
Q Consensus 533 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~--~ 607 (751)
......+..++..+...|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677788888889999999999999888753 2222 46677788888899999999999999876322111 1
Q ss_pred hHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 608 TYNPLIKQHCLR--------NDMRTTAKIYKGMCAQGITPDG-NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSS 678 (751)
Q Consensus 608 ~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 678 (751)
++..+..++... |+.++|.+.++++.+. .|+. ..+..+.... ..... . ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~~~~-------~-------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YLRNR-------L-------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HHHHH-------H-------HHH
Confidence 344455555544 6778888888888774 3432 2222221110 00000 0 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 679 YNALIKGFLKRKKYLEARELFEEMRRGG--LVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 679 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
...+...+.+.|++++|+..++++++.. -+.....+..++.++.+.|++++|.+.++.+....
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2356677889999999999999998752 12245788899999999999999999888876654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-05 Score=74.32 Aligned_cols=157 Identities=10% Similarity=-0.003 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC
Q 004470 541 TIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRN 620 (751)
Q Consensus 541 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g 620 (751)
.+-..+...|+-+.+..+....... .+.|......++....+.|++.+|...+++.... -++|...|+.+.-+|.+.|
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 3334444444444444444443322 1223333444444444555555555555554443 2334455555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 621 DMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFE 700 (751)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 700 (751)
+.+.|..-|.+..+.. .-++..++.+.-.|.-.|+.+.|..++......+.. |..+-..+.......|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555555544421 113334444444444455555555555554443222 34444444444444555555544443
Q ss_pred H
Q 004470 701 E 701 (751)
Q Consensus 701 ~ 701 (751)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.1e-05 Score=85.90 Aligned_cols=202 Identities=13% Similarity=0.100 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004470 502 YTYNSIVNGLCKAGNILQAVKLMEDMEVA-GFHPD---TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVL 577 (751)
Q Consensus 502 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 577 (751)
..|-..+......++.++|.++.+++... ++.-. .-.|.++++.-..-|.-+...++|+++.+. ......|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHH
Confidence 34444444444444444444444444321 10000 122333333333334444444445444432 1122334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 004470 578 MNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD---GNTYNILLQGHCKA 654 (751)
Q Consensus 578 i~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 654 (751)
...|.+.+..++|.++++.|.++ ..-....|...+..+.++.+-+.|.+++.++++. -|. .....-.+..-.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhc
Confidence 44555555555555555555443 1123344444455555555555555555554442 222 22223333444455
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004470 655 RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVA 709 (751)
Q Consensus 655 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 709 (751)
|+.+.+..+|+..+...++ -...|+.+++.-.++|+.+.++.+|+++...++.|
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 5555555566555554333 44555555665556666666666666665555544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.9e-06 Score=88.10 Aligned_cols=222 Identities=18% Similarity=0.196 Sum_probs=174.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 358 VPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTAL 437 (751)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 437 (751)
+|-...-..+...+.+.|-..+|..+|++.. .|..+|.+|+..|+..+|..+..+.+++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3444445567788889999999999998765 4667788999999999999998888874 7888889888
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 004470 438 IDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNI 517 (751)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 517 (751)
++......-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.+ +....+|..+.-+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88877777788888888775432 22333333455789999999998877764 33667888888888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 518 LQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWM 597 (751)
Q Consensus 518 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 597 (751)
+.|.+.|....... +.+...||.+-.+|.+.++-.+|...+.+..+.+ ..+...|...+....+.|.+++|.+.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999999888754 5567889999999999999999999999998876 445666777777778899999999999888
Q ss_pred HHc
Q 004470 598 LEK 600 (751)
Q Consensus 598 ~~~ 600 (751)
...
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 753
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.4e-05 Score=85.72 Aligned_cols=218 Identities=14% Similarity=0.132 Sum_probs=165.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 453 LHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRK-GLQL---NIYTYNSIVNGLCKAGNILQAVKLMEDME 528 (751)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 528 (751)
-|++..... +.+...|-..|......++.++|.++.++.... ++.- -...|.++++.-...|.-+...++|+++.
T Consensus 1446 Dferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 344444443 235667888888888999999999999988764 1111 12467777777777788888889999988
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHh
Q 004470 529 VAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKP-NAA 607 (751)
Q Consensus 529 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p-~~~ 607 (751)
+.. .....|..|...|.+.+.+++|.++|+.|.++ +......|...++.+.+.++-+.|..++.++++.-.+- ...
T Consensus 1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 752 33556788889999999999999999999875 34577789999999999999999999999888752221 233
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT 675 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 675 (751)
.....+..-.+.|+.+.+..+|+..+... +--...|+.+++.-.++|+.+.+..+|++++..++.|-
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 44555666678999999999999888753 33567788999999999999999999999998877653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.2e-06 Score=90.54 Aligned_cols=151 Identities=7% Similarity=0.018 Sum_probs=130.2
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHH
Q 004470 178 YKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTA 257 (751)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 257 (751)
.++++.++.++..|+.+..+.|++++|..+++.+.+. .|+.......+....++.+++++|+..+++....++. +..
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~ 155 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAR 155 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHH
Confidence 3556888999999999999999999999999999987 8999888887777777899999999999999999776 888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 004470 258 SYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVV 333 (751)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 333 (751)
..+.+..++.+.|++++|..+|++....+. -+..++..+...+.+.|+.++|...|++..+.- .+....|+.++
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 899999999999999999999999997442 347889999999999999999999999998762 33445555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-05 Score=74.33 Aligned_cols=120 Identities=11% Similarity=0.060 Sum_probs=74.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH-HHcCC--HHHH
Q 004470 549 SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQH-CLRND--MRTT 625 (751)
Q Consensus 549 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~-~~~g~--~~~A 625 (751)
.++.+++...++..++.+ +.+...|..+...|...|++++|...+++..+... .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666553 45666667676677777777777777776666532 2455555555543 45555 3677
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 626 AKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKG 671 (751)
Q Consensus 626 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 671 (751)
.+++++.++.+ +.+...+..+...+.+.|++++|+..|+++++..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777766643 2245566666666667777777777777766653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.9e-05 Score=86.27 Aligned_cols=241 Identities=10% Similarity=0.093 Sum_probs=151.8
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004470 426 GLEP-DEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTY 504 (751)
Q Consensus 426 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 504 (751)
+..| +...+..|+..+...+++++|.++.+...+..+. ....|..+...+.+.++.+++..+ .+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~------------ 89 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NL------------ 89 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hh------------
Confidence 3444 4567888999999999999999999977775422 444555555567777776665544 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 505 NSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 505 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 584 (751)
+.......++.....+...+... .-+...+..+..+|-+.|+.++|..+++++++.. +.|+.+.|.+...|...
T Consensus 90 ---l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 90 ---IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred ---hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 22233333443333344444443 3455678888899999999999999999999886 66888899999999888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004470 585 GMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD-GNTYNILLQGHCKARNMKEAWFL 663 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~ 663 (751)
++++|.+++.+.+.. +...+++..+.++|.+++... |+ ...+.. +
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~----------------i 209 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLR----------------I 209 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHH----------------H
Confidence 999999988887764 455667777788888777642 32 212111 1
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 664 HKEMVQK-GFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINF 722 (751)
Q Consensus 664 ~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (751)
.+.+... |..--..++..+...|...+++++++.+++.+++.. +.|.....-++.+|.
T Consensus 210 ~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 210 ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 1111111 111123344445555555566666666666666643 334444555555554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.2e-06 Score=75.15 Aligned_cols=121 Identities=12% Similarity=-0.055 Sum_probs=87.4
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 591 EKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK 670 (751)
Q Consensus 591 ~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 670 (751)
..++++.++. .|+. +..+...+...|++++|.+.|+..+... +.+...|..+...+.+.|++++|+..|+++.+.
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456666654 3443 4456677778888888888888888753 336777788888888888888888888888877
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 671 GFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 671 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
++. ++..+..++.++...|++++|+..|+.+++.. +.++..+....
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~ 133 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQ 133 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 654 77788888888888888888888888888753 34455554433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-05 Score=71.83 Aligned_cols=94 Identities=14% Similarity=-0.020 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 646 ILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG 725 (751)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (751)
.+...+...|++++|...|+.++...+. +...|..++.++.+.|++++|+..|+++.+.+ +.+...+..++.++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3455555566666666666666555433 55555566666666666666666666666543 445555555666666666
Q ss_pred ChhHHHHHHHHHHHcC
Q 004470 726 NTEITLELCDAAIECY 741 (751)
Q Consensus 726 ~~~~A~~~~~~~~~~~ 741 (751)
+.++|++.++++++..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666665543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-05 Score=72.33 Aligned_cols=152 Identities=13% Similarity=0.002 Sum_probs=106.9
Q ss_pred CCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 233 TCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLK 312 (751)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 312 (751)
..|+-+....+........+ .|....+..+....+.|++.+|+..|.+..... ++|...|+.+.-+|.+.|+++.|..
T Consensus 78 ~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 78 LRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred hcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHH
Confidence 45666666666666544322 255666667777788888888888888776543 3677788888888888888888888
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 313 LIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMR 388 (751)
Q Consensus 313 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 388 (751)
-|.+..+.- .-+...++.+.-.+.-.|+.+.|..++......+ .-|..+-..|.-.....|++++|.++...-.
T Consensus 156 ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 156 AYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 887777662 2356667777777777888888888877777664 2366667777777777888888877765443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00049 Score=64.60 Aligned_cols=150 Identities=17% Similarity=0.102 Sum_probs=82.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----Hc
Q 004470 544 DAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHC----LR 619 (751)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~----~~ 619 (751)
..|++.|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+- .+..|.+-|..++. ..
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34555555555555554411 1122222223344455555555555555542 13344444444432 23
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HH
Q 004470 620 NDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR-EL 698 (751)
Q Consensus 620 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~ 698 (751)
+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++++.+... ++.+...++-.-...|+..++. +.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3466677777777653 4567777777777777777777777777777777555 5666666665555556554433 34
Q ss_pred HHHHHH
Q 004470 699 FEEMRR 704 (751)
Q Consensus 699 ~~~~~~ 704 (751)
+.+...
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 444433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.9e-06 Score=73.06 Aligned_cols=96 Identities=19% Similarity=0.128 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFE 723 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (751)
...+...+...|++++|...++.+.+.++. +...+..++..+.+.|++++|...+++..+.+ +.+...+..++.++..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 334444445555555555555555544322 44455555555555555555555555554432 3344445555555555
Q ss_pred cCChhHHHHHHHHHHHcC
Q 004470 724 EGNTEITLELCDAAIECY 741 (751)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~ 741 (751)
.|++++|.++++++++..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 555555555555555544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00015 Score=67.94 Aligned_cols=247 Identities=12% Similarity=0.072 Sum_probs=157.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004470 476 LCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKA 555 (751)
Q Consensus 476 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 555 (751)
+.-.|++..++..-....... -+...-..+..+|...|.+..... ++.... .|.......+.......++.++-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 333466666655444433321 233344445556666665543322 222222 34444444444444445554444
Q ss_pred HH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 556 HE-LLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 556 ~~-~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
.. +.+.+.......+......-...|+..|++++|++...... +......=...+.+..+.+-|.+.+++|.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 43 44444444333343444444557889999999999887622 222222333456688899999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 635 QGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710 (751)
Q Consensus 635 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 710 (751)
- .+..|.+.|..++.+ .+.+.+|.-+|++|-++ ..|++.+.+..+.++...|++++|..+++.++.+. ..+
T Consensus 166 i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~d 240 (299)
T KOG3081|consen 166 I---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKD 240 (299)
T ss_pred c---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCC
Confidence 3 367778878777764 45799999999999876 57799999999999999999999999999999975 667
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 004470 711 REIYYFFVDINFEEGNTEIT-LELCDAAIE 739 (751)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 739 (751)
+++...++-+-...|.-.++ .+++.....
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 88877777666666665443 344444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7e-05 Score=76.29 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=93.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 004470 128 ILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKL 207 (751)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 207 (751)
...+.+-.+......|.+++|+..|..+++.. |.|+..+...+..+.+.++.++|.+.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~----------------------P~N~~~~~~~~~i~~~~nk~~~A~e~ 362 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ----------------------PDNPYYLELAGDILLEANKAKEAIER 362 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 34445555555555677777777777665543 66666677777777777777777777
Q ss_pred HHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004470 208 FEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGC 287 (751)
Q Consensus 208 ~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 287 (751)
+++++.. .|+.......++..+.+.|+..+|+..++......+. |+..|..|..+|...|+..+|.....+
T Consensus 363 ~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------ 433 (484)
T COG4783 363 LKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------ 433 (484)
T ss_pred HHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------
Confidence 7777766 5665544444444444566666777766666665544 666677777777666666666544332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 288 SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIK 320 (751)
Q Consensus 288 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 320 (751)
+|...|++++|+..+....+.
T Consensus 434 ------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 434 ------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ------------HHHhCCCHHHHHHHHHHHHHh
Confidence 334556666666666666554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00025 Score=65.98 Aligned_cols=189 Identities=13% Similarity=0.106 Sum_probs=123.1
Q ss_pred HcCCHHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 004470 513 KAGNILQAVKLMEDMEV---AG-FHPDTFT-YTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMI 587 (751)
Q Consensus 513 ~~g~~~~A~~~~~~~~~---~~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 587 (751)
...+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|...++.+.+. ++.+...-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 44577788887777754 23 3344433 444555566777788888888777665 333333322222334456778
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 588 EDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEM 667 (751)
Q Consensus 588 ~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 667 (751)
++|+++++.+++.. +.|.+++..-+...-..|+.-+|++-+.+..+. +..|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888777764 335666666666666777777777777776664 4557777777888888888888888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 004470 668 VQKGFNLTTSSYNALIKGFLKRK---KYLEARELFEEMRRG 705 (751)
Q Consensus 668 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 705 (751)
+-..|. ++..+..+...+.-.| +.+-|.++|.+.++.
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 765443 6666677777766554 455677777777764
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00019 Score=73.25 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=81.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHHcCCHHH
Q 004470 546 YCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPN-AATYNPLIKQHCLRNDMRT 624 (751)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 624 (751)
+...|++++|+..++.++.. .+.|+..+....+.+.+.|+.++|.+.+++++.. .|+ ....-.+..+|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 44556666666666666654 2445555555566666666666666666666654 344 3444455566666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 625 TAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 625 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
|+.+++...... +.|+..|..|..+|...|+..+|..-.. ..|.-.|++++|...+..+.+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHH
Confidence 666666665542 3456666666666666666655544322 234445666666666666665
Q ss_pred C
Q 004470 705 G 705 (751)
Q Consensus 705 ~ 705 (751)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0008 Score=62.72 Aligned_cols=191 Identities=15% Similarity=0.073 Sum_probs=148.2
Q ss_pred HhcCCHHHHHHHHHHHHHc---C-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 477 CKSGELETANELLHEMCRK---G-LQLNIYT-YNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGE 551 (751)
Q Consensus 477 ~~~g~~~~A~~l~~~m~~~---g-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 551 (751)
+...+.++..+++.++... | ..++..+ |..+.-+....|+.+.|...++.+...- +-+..+-..-...+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhc
Confidence 3456788999999888643 4 5556653 5556667778899999999999988763 3343333333334567899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 552 MVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKG 631 (751)
Q Consensus 552 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 631 (751)
+++|.++++.+++.+ +.|.+++-.=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999999886 667788887777777889989999999999887 556999999999999999999999999999
Q ss_pred HHHCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCC
Q 004470 632 MCAQGITP-DGNTYNILLQGHCKAR---NMKEAWFLHKEMVQKGF 672 (751)
Q Consensus 632 m~~~g~~p-~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~ 672 (751)
++-. .| ++..+..+.+.+.-.| +.+-|.++|.+.++..+
T Consensus 180 ~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 180 LLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9874 45 5666667777665444 67789999999988743
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.6e-05 Score=67.08 Aligned_cols=126 Identities=11% Similarity=0.080 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 004470 609 YNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD---GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT--TSSYNALI 683 (751)
Q Consensus 609 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~ 683 (751)
|..++..+ ..++...+.+.++.+.+.. +.+ ....-.+...+...|++++|...|+.+.+....|+ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33333344 4788888888888888753 222 23344456778888999999999999988763332 23556678
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 684 KGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
..+...|++++|+..++..... ...+..+...+++|.+.|++++|+..|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8888999999999998774332 3345667788899999999999999988763
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.6e-05 Score=66.75 Aligned_cols=106 Identities=8% Similarity=-0.112 Sum_probs=57.5
Q ss_pred hhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCC
Q 004470 121 ACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARK 200 (751)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~ 200 (751)
+...+|.+......++..+...|++++|...++.++..+ |.++.++..++.++...|+
T Consensus 9 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------p~~~~~~~~la~~~~~~~~ 66 (135)
T TIGR02552 9 LLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD----------------------PYNSRYWLGLAACCQMLKE 66 (135)
T ss_pred HHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----------------------CCcHHHHHHHHHHHHHHHH
Confidence 333444445555555666666666666666666655433 4455566666666666666
Q ss_pred hhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc
Q 004470 201 LNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL 250 (751)
Q Consensus 201 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~ 250 (751)
+++|...++++++. .|+.......++.++...|++++|.+.|+++.+.
T Consensus 67 ~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 67 YEEAIDAYALAAAL--DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666554 2333333333333443455555555555555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.5e-06 Score=65.62 Aligned_cols=82 Identities=17% Similarity=0.239 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 004470 654 ARNMKEAWFLHKEMVQKGFN-LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLE 732 (751)
Q Consensus 654 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (751)
.|++++|+.+++++.+..+. ++...+..++.+|.+.|++++|+.++++ .+.+ +.+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57889999999999887553 2455666689999999999999999988 3322 2344555667889999999999999
Q ss_pred HHHHH
Q 004470 733 LCDAA 737 (751)
Q Consensus 733 ~~~~~ 737 (751)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 88764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.025 Score=60.26 Aligned_cols=204 Identities=14% Similarity=0.120 Sum_probs=121.3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH---------HhCCCCHHHHHHHHHhchhcCC
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRL---------SNTCDGLRMVVKSFTEFPELGI 252 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l---------~~~~~~~~~a~~~~~~~~~~~~ 252 (751)
.+.|..|.+|+..-...-.++-|...|-+.... |.+.....+-... ..-.|++++|.+.|-++-..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 567889999999888888888888888766542 3332111111111 111378888888887776652
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 004470 253 CWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGC--SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYN 330 (751)
Q Consensus 253 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 330 (751)
..|..+.+.|++-...++++.-.. +. ..-...|+.+...+.....+++|.+.+..-.. ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e 826 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TE 826 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hH
Confidence 345667777777777666643111 11 11234677777777777788888877765321 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004470 331 SVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTG 410 (751)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 410 (751)
..+.++.+...+++-+.+-+.+ +-|....-.+.+++.+.|.-++|.+.|-+-.. |. ..+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHH
Confidence 3455666666665544433332 33455566677778888888877776644321 21 2344556666
Q ss_pred CHHHHHHHHHH
Q 004470 411 KMVEAEKLFHE 421 (751)
Q Consensus 411 ~~~~A~~~~~~ 421 (751)
++.+|.++-+.
T Consensus 893 QW~~avelaq~ 903 (1189)
T KOG2041|consen 893 QWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHh
Confidence 77777766544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00017 Score=74.49 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 611 PLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK 690 (751)
Q Consensus 611 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 690 (751)
.|+..+...++++.|.++++++.+.. |+.. ..++..+...++-.+|++++.+.++..+. +...+..-+..|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 34444445555666666666665542 3322 23455555555666666666666654332 4555555555566666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 691 KYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 691 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
+++.|+++.+++.+.. |.+..+|..|+.+|.+.|++++|+-.++.+
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666666666542 334456666666666666666666555544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0001 Score=64.41 Aligned_cols=87 Identities=10% Similarity=0.022 Sum_probs=43.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEA 695 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 695 (751)
+...|++++|..+|+-+...+ +-+..-|..|.-++-..|++++|+..|..+...++. |+..+-.++.++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHH
Confidence 445555555555555554432 113333444455555555555555555555554433 445555555555555555555
Q ss_pred HHHHHHHHH
Q 004470 696 RELFEEMRR 704 (751)
Q Consensus 696 ~~~~~~~~~ 704 (751)
.+-|+..+.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 555555444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.03 Score=57.01 Aligned_cols=136 Identities=17% Similarity=0.222 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHH----HHHH---HcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH--HHh
Q 004470 587 IEDGEKLLKWMLEKGLKPNAATYNPLI----KQHC---LRNDMRTTAKIYKGMCAQGITPD----GNTYNILLQG--HCK 653 (751)
Q Consensus 587 ~~~A~~l~~~~~~~g~~p~~~~~~~l~----~~~~---~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~--~~~ 653 (751)
-++|+.+++..++-. .-|...-|.+. ..|. ....+..-..+-+-+.+.|+.|- ...-|.|.++ +..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 666777776666531 11222222211 1121 22333444444444555677663 3344555443 456
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 004470 654 ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLEL 733 (751)
Q Consensus 654 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 733 (751)
.|++.++.-.-.-+.+ +.|++.+|..++-++....++++|..++.. +||+..++.. +.++|.-+
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds---------kvqKAl~l 538 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS---------KVQKALAL 538 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH---------HHHHHHHH
Confidence 7888887655444433 567888999888888888899999988876 5777777764 34556555
Q ss_pred HHHHHH
Q 004470 734 CDAAIE 739 (751)
Q Consensus 734 ~~~~~~ 739 (751)
+.+-+.
T Consensus 539 CqKh~~ 544 (549)
T PF07079_consen 539 CQKHLP 544 (549)
T ss_pred HHHhhh
Confidence 555443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00014 Score=59.20 Aligned_cols=95 Identities=22% Similarity=0.193 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFE 723 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (751)
+..++..+...|++++|...++++.+..+. +...+..++..+...|++++|.+.++...+.. +.+...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344555666667777777777777665433 44566666777777777777777777776643 3444566666677777
Q ss_pred cCChhHHHHHHHHHHHc
Q 004470 724 EGNTEITLELCDAAIEC 740 (751)
Q Consensus 724 ~g~~~~A~~~~~~~~~~ 740 (751)
.|++++|.+.++++++.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 77777777777776654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00016 Score=62.11 Aligned_cols=100 Identities=15% Similarity=0.037 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFN--LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL--VADREIYYFFVD 719 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~ 719 (751)
+..++..+.+.|++++|.+.++++++..+. .....+..++.++.+.|++++|...++.+..... +.....+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555566666666666666554321 0123444556666666666666666666655321 112344555556
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC
Q 004470 720 INFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
++.+.|+.++|.+.++++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcC
Confidence 666666666666666666665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00024 Score=63.47 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHH-hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVD-SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIH 264 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 264 (751)
.+...++..+...|++++|...|+.++.....|+.. ....-+..+....|++++|+..++..... ......+....+
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gd 126 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGD 126 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHH
Confidence 455667777888888888888888887764333221 12222344444566666666666554332 223445555666
Q ss_pred HHHhcCCHHHHHHHHHH
Q 004470 265 CLCRFGKIKEAHLLLLQ 281 (751)
Q Consensus 265 ~~~~~g~~~~A~~~~~~ 281 (751)
.|.+.|+.++|...|+.
T Consensus 127 i~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 66666666666666654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.5e-05 Score=51.18 Aligned_cols=31 Identities=35% Similarity=0.851 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004470 294 FSTIINGYCYLGELQRVLKLIEEMQIKGLKP 324 (751)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 324 (751)
||++|.+|++.|++++|.++|++|.+.|++|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3344444444444444444444444433333
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0046 Score=61.83 Aligned_cols=232 Identities=12% Similarity=-0.023 Sum_probs=125.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-------------HH
Q 004470 509 NGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVT-------------FN 575 (751)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------------~~ 575 (751)
.++.-.|+.++|.+.-....+.. ..+......-..++.-.++.+.|...|++.+..+ |+... +.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 34556677777777766666543 2233222222223345567777777777776542 33221 11
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 004470 576 VLMNGFCMSGMIEDGEKLLKWMLEK---GLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD-GNTYNILLQGH 651 (751)
Q Consensus 576 ~li~~~~~~g~~~~A~~l~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~ 651 (751)
.-.+-..+.|++..|.+.+.+.+.. ...|+...|........+.|+.++|+.--++..+. .|. ...|..-..++
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~ 331 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCH 331 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHH
Confidence 1123345678888888888888764 23344555666666677888888888877777663 221 22233334555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCh
Q 004470 652 CKARNMKEAWFLHKEMVQKGFNL-TTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDIN---FEEGNT 727 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~ 727 (751)
...++|++|.+-+++..+....+ ...++.....++-+..+ .+=.+++.-.......+....|..+.-.+ ...|..
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR-kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq 410 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR-KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQ 410 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh-hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchh
Confidence 56778888888888877653321 12233333333333222 22222332222222234445554444332 233556
Q ss_pred hHHHHHHHHHHHcCCCCCC
Q 004470 728 EITLELCDAAIECYLVGKA 746 (751)
Q Consensus 728 ~~A~~~~~~~~~~~~~~~~ 746 (751)
.+|...|+++-+.+.+.++
T Consensus 411 ~eaE~kFkevgeAy~il~d 429 (486)
T KOG0550|consen 411 KEAEAKFKEVGEAYTILSD 429 (486)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7777777777766655443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.4e-05 Score=50.18 Aligned_cols=34 Identities=44% Similarity=0.773 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 004470 258 SYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDV 291 (751)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (751)
+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0006 Score=70.50 Aligned_cols=125 Identities=14% Similarity=0.137 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 004470 538 TYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHC 617 (751)
Q Consensus 538 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~ 617 (751)
....|+..+...++++.|.++|+++.+.. |+. ...++..+...++-.+|.+++++.++.. +-+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455566666777888888888877663 443 3446666667777777888877777652 225555555666677
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 618 LRNDMRTTAKIYKGMCAQGITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 618 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
..++.+.|+++.+++.+. .|+ ..+|..|..+|.+.|++++|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 777778888888777774 453 45777777888888888888777776543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0043 Score=62.01 Aligned_cols=52 Identities=10% Similarity=-0.068 Sum_probs=43.3
Q ss_pred cCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 004470 108 RSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKP 159 (751)
Q Consensus 108 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~ 159 (751)
+++...||..+..|..-.|.+...|...+..+...+++++|..-.++.++..
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k 113 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK 113 (486)
T ss_pred HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecC
Confidence 5677889999999999899888888888888888899998887777766653
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.5e-05 Score=48.99 Aligned_cols=32 Identities=25% Similarity=0.464 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 004470 258 SYNIMIHCLCRFGKIKEAHLLLLQMELRGCSP 289 (751)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (751)
+||.++.++++.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555554443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.8e-05 Score=48.82 Aligned_cols=33 Identities=24% Similarity=0.578 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004470 292 VSFSTIINGYCYLGELQRVLKLIEEMQIKGLKP 324 (751)
Q Consensus 292 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 324 (751)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466666666666666666666666666666655
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00035 Score=72.60 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=86.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004470 612 LIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKK 691 (751)
Q Consensus 612 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 691 (751)
....+...|++++|++.|+++++.+ +.+...|..+..+|.+.|++++|+..++++++..+. +...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 3455678999999999999999864 336778888999999999999999999999998654 77889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 692 YLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 692 ~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
+++|+..|+++++.+ +.+......+.
T Consensus 86 ~~eA~~~~~~al~l~-P~~~~~~~~l~ 111 (356)
T PLN03088 86 YQTAKAALEKGASLA-PGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 999999999999864 44555544443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0015 Score=55.97 Aligned_cols=99 Identities=9% Similarity=-0.042 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGIT--PDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL--TTSSYNALI 683 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 683 (751)
++..++..+...|++++|.+.++.+...... .....+..+...+.+.|++++|...++.+....+.. ...++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445556666777777777777777664211 113455667777888888888888888877653331 245677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 004470 684 KGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
.++.+.|++++|.+.++++++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77888888888888888887753
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.12 Score=55.25 Aligned_cols=154 Identities=16% Similarity=0.088 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 340 SKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNII--PDLLTYTAIICGFCLTGKMVEAEK 417 (751)
Q Consensus 340 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~ 417 (751)
|++++|++++-+|-.+. ..|..+.+.|++-...++++.--. +.. --...|+.+...+.....+++|.+
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667766666655441 234555566666655555532110 000 012345556666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004470 418 LFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGL 497 (751)
Q Consensus 418 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 497 (751)
.|..--. ....+.++.+...+++-..+...+. -+....-.+.+++.+.|.-++|.+.+-+-. .
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~ 880 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS---L 880 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc---C
Confidence 5544211 1123444444444444433333322 244445556666666666666665553321 1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 498 QLNIYTYNSIVNGLCKAGNILQAVKLMED 526 (751)
Q Consensus 498 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 526 (751)
+ ...+..|...+++.+|.++-+.
T Consensus 881 p------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 P------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred c------HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1224445555556555555444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00067 Score=59.41 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
.....++..+...|++++|..+|+.+... .|....+-.-|+.+.+..|++++|+..|..+...++. |+..+-.+..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 34567788889999999999999999887 7888888888888888889999999999999888865 88888888889
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 004470 266 LCRFGKIKEAHLLLLQMELR 285 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~ 285 (751)
+.+.|+.+.|.+-|+.....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999876653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00098 Score=53.97 Aligned_cols=95 Identities=18% Similarity=0.120 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004470 609 YNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK 688 (751)
Q Consensus 609 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 688 (751)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++.....+. +..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3445556666777777777777776642 223455666777777777788888887777766433 44567777777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 004470 689 RKKYLEARELFEEMRRG 705 (751)
Q Consensus 689 ~g~~~~A~~~~~~~~~~ 705 (751)
.|++++|...++...+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 78888888777777653
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00055 Score=71.12 Aligned_cols=100 Identities=11% Similarity=0.019 Sum_probs=72.0
Q ss_pred hcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChh
Q 004470 107 IRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPH 186 (751)
Q Consensus 107 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (751)
..++.+.|+..|+.+....|.+..++..++..+...|++++|...+++++... |.++.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~----------------------P~~~~ 71 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD----------------------PSLAK 71 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------cCCHH
Confidence 35677778888888777777777777777777777788888887777777654 55666
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRL 230 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l 230 (751)
+|..++.+|...|++++|+..|+++++. .|+.......+..+
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 7777777888888888888888877776 45555444444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0017 Score=59.86 Aligned_cols=85 Identities=9% Similarity=-0.026 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD--GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
.+..+...+...|++++|...|++.++.+..+. ...+..+...+.+.|++++|+..++++++..+. +...+..++..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344555555556666666666666654322111 234555555566666666666666666554332 34455555555
Q ss_pred HHhcCCHH
Q 004470 686 FLKRKKYL 693 (751)
Q Consensus 686 ~~~~g~~~ 693 (751)
+...|+..
T Consensus 116 ~~~~g~~~ 123 (172)
T PRK02603 116 YHKRGEKA 123 (172)
T ss_pred HHHcCChH
Confidence 55554433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0055 Score=61.65 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLN 213 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 213 (751)
..|.-.+..|-..|++++|.+.|.++..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 3566677777888888888888887754
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00045 Score=66.23 Aligned_cols=100 Identities=16% Similarity=0.096 Sum_probs=83.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKY 692 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 692 (751)
..-+.+.+++++|+..|.++++.. +-|.+.|..-..+|++.|.++.|++-.+..+..++. ...+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcH
Confidence 444678899999999999999853 236778888899999999999999999999887544 456999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHH
Q 004470 693 LEARELFEEMRRGGLVADREIYYF 716 (751)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~ 716 (751)
++|++.|++.++. .|+-.+|..
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHHH
Confidence 9999999999984 677666653
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0017 Score=64.53 Aligned_cols=132 Identities=16% Similarity=0.082 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH----cCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLE----KGLK-PNAATYNPLIKQHCLRNDMRTTAKIYKGMCA----QGI-TPDGN 642 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~----~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~ 642 (751)
.|..|.+.|.-.|+++.|+...+.-++ -|-+ .....+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555555566677776665543322 1211 1123456667777777777777777766543 221 12344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 643 TYNILLQGHCKARNMKEAWFLHKEMVQK-----GFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
+...|...|.-..++++|+.++.+-+.. +..-....+.+|..++...|..+.|+.+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5556777777777888888777654331 1111345778888888888888888888777665
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00042 Score=66.45 Aligned_cols=100 Identities=13% Similarity=0.018 Sum_probs=81.1
Q ss_pred cCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhh
Q 004470 108 RSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHV 187 (751)
Q Consensus 108 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (751)
.++.+.|+..+..|....|.+..-||..+..+.+.|.++.|..-.+.+++.+ |....+
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD----------------------p~yska 151 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID----------------------PHYSKA 151 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC----------------------hHHHHH
Confidence 3467888888888888888888888999999999999999988888888765 455678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLS 231 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~ 231 (751)
|..|+.+|...|++++|++.|+++++. .|+..+|-.-|...-
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALEL--DPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhcc--CCCcHHHHHHHHHHH
Confidence 888999999999999999999988876 788777665555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=6.9e-05 Score=46.39 Aligned_cols=29 Identities=34% Similarity=0.667 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004470 258 SYNIMIHCLCRFGKIKEAHLLLLQMELRG 286 (751)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (751)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00013 Score=58.13 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=49.0
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 619 RNDMRTTAKIYKGMCAQGIT-PDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 697 (751)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|+.++++ .+.+.. +......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777764321 1334444567777777777777777776 322222 33444455777777777777777
Q ss_pred HHHH
Q 004470 698 LFEE 701 (751)
Q Consensus 698 ~~~~ 701 (751)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00032 Score=53.29 Aligned_cols=65 Identities=22% Similarity=0.270 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHc
Q 004470 675 TTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG-NTEITLELCDAAIEC 740 (751)
Q Consensus 675 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 740 (751)
++.+|..++..+...|++++|+..|+++++.+ +.+...+..++.++.+.| ++++|++.++++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45667777777777777777777777777754 446667777777777777 577777777777664
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.046 Score=53.34 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 681 ALIKGFLKRKKYLEARELFEEMRRG--GLVADREIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 681 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
.++.-|.+.|.+..|..-++.+++. +.+...+....++.+|...|..++|.+....+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 5667788899999999999998873 333355677788889999999999988776553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.001 Score=65.34 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH
Q 004470 643 TYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT--TSSYNALIKGFLKRKKYLEARELFEEMRRGG--LVADREIYYFFV 718 (751)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~ 718 (751)
.|...+..+.+.|++++|+..|+.+++..+... +..+..++..|...|++++|...|+.+++.- -+.....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444566788888888888877644321 3466677788888888888888888877631 122345566667
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 719 DINFEEGNTEITLELCDAAIECYLVGK 745 (751)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (751)
.++.+.|++++|++.++++++.+....
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 777778888888888888887776544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0016 Score=67.62 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 288 SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIK--GLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYT 365 (751)
Q Consensus 288 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 365 (751)
..+......+++.+....+++.+..++-+.... ....-..|..++++.|.+.|..+++..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345566666677766667777777777777654 222335566677888888888888888877777778778888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 366 TLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLT 409 (751)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 409 (751)
.||+.+.+.|++..|.++..+|...+...+..|+..-+.++.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888777776665555556655555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00037 Score=52.21 Aligned_cols=58 Identities=14% Similarity=0.250 Sum_probs=41.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004470 135 VVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNY 214 (751)
Q Consensus 135 ~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 214 (751)
++..+...|++++|...++++++.. |.++.++..++.++...|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~----------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD----------------------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS----------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566667777777777777777665 556677777777777777777777777777665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.003 Score=53.43 Aligned_cols=90 Identities=16% Similarity=0.032 Sum_probs=42.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc
Q 004470 614 KQHCLRNDMRTTAKIYKGMCAQGITPD--GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL--TTSSYNALIKGFLKR 689 (751)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~ 689 (751)
.++-..|+.++|+.+|++.+..|+... ...+-.+...+...|++++|..++++.....+.+ +......+.-++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455555555555555555544332 2234444555555555555555555555432210 111222233344455
Q ss_pred CCHHHHHHHHHHHH
Q 004470 690 KKYLEARELFEEMR 703 (751)
Q Consensus 690 g~~~~A~~~~~~~~ 703 (751)
|+.++|++.+-..+
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0028 Score=58.52 Aligned_cols=97 Identities=10% Similarity=-0.047 Sum_probs=72.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC-HHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHH
Q 004470 183 SDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVIS-VDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNI 261 (751)
Q Consensus 183 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (751)
.....+..++..+...|++++|...|+++++.+..+. .......++.++...|++++|...++++.+..+. +...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 3456788899999999999999999999987643332 2344455666666789999999999999887554 5677777
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 004470 262 MIHCLCRFGKIKEAHLLLL 280 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~ 280 (751)
+...+...|+...+..-++
T Consensus 112 lg~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHHcCChHhHhhCHH
Confidence 8888888887655554433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.027 Score=54.89 Aligned_cols=67 Identities=16% Similarity=0.015 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHH---HHHHHHHhCCCCHHHHHHHHHhchhcCCC
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCN---LFLSRLSNTCDGLRMVVKSFTEFPELGIC 253 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~---~ll~~l~~~~~~~~~a~~~~~~~~~~~~~ 253 (751)
+..+...+..+.+.|++++|.+.|+++... .|+..... ..++..+.+.+++++|...|+++++..|.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 344555666677777777777777777765 34332221 22333333556666666666666665444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0026 Score=61.62 Aligned_cols=114 Identities=11% Similarity=0.019 Sum_probs=87.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHH-HHHHHHHhCC--CCHHHHHHHHHhchhcCCCcCHHH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCN-LFLSRLSNTC--DGLRMVVKSFTEFPELGICWNTAS 258 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~ll~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~ 258 (751)
|.++.-|.+|+.+|...|+++.|..-|.++.+. .|++...- .+...++... ....++...|+++...++. |+.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 788889999999999999999999999999886 45544333 3333444333 3456899999999998766 8888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004470 259 YNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIING 300 (751)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 300 (751)
...|...+...|++.+|...|+.|.+.. |....+..+|..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 8889999999999999999999999864 333445566554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0017 Score=67.56 Aligned_cols=121 Identities=15% Similarity=0.137 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004470 428 EPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMR--LTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYN 505 (751)
Q Consensus 428 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~ 505 (751)
+.+......+++.+....+++.+..++.+..... ...-..|..++++.|.+.|..++++++++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4455555555555555555555655555554431 11112233456666666666666666666555556666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004470 506 SIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCK 548 (751)
Q Consensus 506 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 548 (751)
.|++.+.+.|++..|.++...|...+...+..++...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666665555544444554444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00011 Score=45.46 Aligned_cols=29 Identities=31% Similarity=0.948 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 293 SFSTIINGYCYLGELQRVLKLIEEMQIKG 321 (751)
Q Consensus 293 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 321 (751)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.033 Score=49.62 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 004470 568 QPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG---ITPDGNTY 644 (751)
Q Consensus 568 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~ 644 (751)
-|++..-..|..++.+.|+..+|...|++...--..-|......+.++....++...|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 556666666677777777777777777776654344566666666666677777777777777666632 1222 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 645 NILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMR 703 (751)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 703 (751)
-.+.+.|...|++.+|..-|+.+++.- |++..-......+.++|+.++|..-+....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 345566667777777777777766643 344333334445566666666555444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0022 Score=58.95 Aligned_cols=94 Identities=11% Similarity=-0.018 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP--DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
.|..+...+...|++++|...|++.+.....+ ...++..+...+...|++++|+..++++.+..+. ....+..++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 34444445555566666666666665432111 1235556666666666666666666666654322 33445555555
Q ss_pred HH-------hcCCHHHHHHHHHHH
Q 004470 686 FL-------KRKKYLEARELFEEM 702 (751)
Q Consensus 686 ~~-------~~g~~~~A~~~~~~~ 702 (751)
+. ..|++++|...+++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 54 556666554444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0023 Score=58.89 Aligned_cols=99 Identities=15% Similarity=-0.013 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 641 GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL--TTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
...|..++..+...|++++|+..|++++.....+ ...++..++..+...|++++|+..++++++.. +.....+..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4557777888889999999999999998764333 23588999999999999999999999999853 44456666666
Q ss_pred HHHH-------hcCChhHHHHHHHHHHHc
Q 004470 719 DINF-------EEGNTEITLELCDAAIEC 740 (751)
Q Consensus 719 ~~~~-------~~g~~~~A~~~~~~~~~~ 740 (751)
..+. +.|++++|...++++++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 6666 888999887777776554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00048 Score=51.56 Aligned_cols=59 Identities=22% Similarity=0.384 Sum_probs=36.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 682 LIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 682 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
++..+.+.|++++|++.|+++++.. +-+...+..++.++.+.|++++|..+++++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3455566666666666666666653 3455666666666666666666666666666554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0052 Score=51.96 Aligned_cols=113 Identities=18% Similarity=0.077 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHH-hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC--cCHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVD-SCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC--WNTASYNIM 262 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 262 (751)
.+...++.++-..|+.++|+.+|++.+..|...... -....++..+...|++++|..++++.....+. .+......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 345667888899999999999999999988665432 23344555556778999999998888765332 122333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004470 263 IHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYC 302 (751)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 302 (751)
..++...|+.++|++.+-.... ++...|.--|..|.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5577788888888888766554 34445555555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00034 Score=52.95 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=48.7
Q ss_pred HhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 004470 140 VAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVIS 219 (751)
Q Consensus 140 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 219 (751)
...|++++|..++++++... |.++.+...|+.+|.+.|++++|..+++++... .|+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~----------------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN----------------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT----------------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTT
T ss_pred hhccCHHHHHHHHHHHHHHC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC
Confidence 45788888888888877654 677778888888888888888888888888877 666
Q ss_pred HHhHHHHHH
Q 004470 220 VDSCNLFLS 228 (751)
Q Consensus 220 ~~~~~~ll~ 228 (751)
...+..++.
T Consensus 58 ~~~~~~l~a 66 (68)
T PF14559_consen 58 NPEYQQLLA 66 (68)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 655555544
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.015 Score=63.25 Aligned_cols=71 Identities=13% Similarity=0.039 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIY 714 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 714 (751)
+...|..+.-.....|++++|...++++++.+ |+...|..++..+...|+.++|.+.++++... .|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 44566666555556677777777777777764 46667777777777777777777777777764 3443344
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0017 Score=52.63 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=42.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCcccHHHH
Q 004470 262 MIHCLCRFGKIKEAHLLLLQMELRGC-SPDVVSFSTIINGYCYLG--------ELQRVLKLIEEMQIKGLKPNPYTYNSV 332 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 332 (751)
.|..+...|++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+++.|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 44455555777777777777777777 677777777777666542 122333444444444444444444444
Q ss_pred HHHH
Q 004470 333 VRLL 336 (751)
Q Consensus 333 i~~~ 336 (751)
+..+
T Consensus 111 l~~L 114 (120)
T PF08579_consen 111 LGSL 114 (120)
T ss_pred HHHH
Confidence 4433
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0098 Score=57.71 Aligned_cols=125 Identities=12% Similarity=-0.043 Sum_probs=93.6
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 004470 205 RKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFG---KIKEAHLLLLQ 281 (751)
Q Consensus 205 ~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~ 281 (751)
..-++.-+.. .|+..--=.+|+..+...|+.+.|...|.++.+..++ |+..+..+..++.... ...++..+|++
T Consensus 142 ~a~Le~~L~~--nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 142 IARLETHLQQ--NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHh--CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 3334444444 4655544456666666899999999999999998655 8888888888776543 45688999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 004470 282 MELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRL 335 (751)
Q Consensus 282 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 335 (751)
+...+. -|+.+...|...+...|++.+|...++.|.+.. |....+..+|..
T Consensus 219 al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 219 ALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 988654 578888888899999999999999999999873 344445555543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.19 Score=50.33 Aligned_cols=321 Identities=15% Similarity=0.078 Sum_probs=188.7
Q ss_pred HHHHHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhh
Q 004470 100 LIWVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYK 179 (751)
Q Consensus 100 ~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (751)
+-|++..+-..|..+-++|.-...... .--..-+-+-...|+-..|++.-.+.-+.-..
T Consensus 58 lwwlv~~iw~sP~t~~Ryfr~rKRdrg---yqALStGliAagAGda~lARkmt~~~~~llss------------------ 116 (531)
T COG3898 58 LWWLVRSIWESPYTARRYFRERKRDRG---YQALSTGLIAAGAGDASLARKMTARASKLLSS------------------ 116 (531)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHhhhH---HHHHhhhhhhhccCchHHHHHHHHHHHhhhhc------------------
Confidence 456677778889999999985533211 11122344556678888888877664322100
Q ss_pred cCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHH---hCCCCHHHHHHHHHhchhcCCCcCH
Q 004470 180 DWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLS---NTCDGLRMVVKSFTEFPELGICWNT 256 (751)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~---~~~~~~~~a~~~~~~~~~~~~~~~~ 256 (751)
...|-+..+=+++-.-.|++++|.+-|+-|+. .|... ..-|..++ +..|..+.|+.+-+++.+..+. -.
T Consensus 117 --DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtR--llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~ 188 (531)
T COG3898 117 --DQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETR--LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LP 188 (531)
T ss_pred --cchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHH--HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-Cc
Confidence 11223334445566678999999999999987 35544 23344443 3568899999988888776544 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHH--HHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCcccH-
Q 004470 257 ASYNIMIHCLCRFGKIKEAHLLLLQMELRG-CSPDVVSF--STIINGYC---YLGELQRVLKLIEEMQIKGLKPNPYTY- 329 (751)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~--~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~- 329 (751)
..+..++...|..|+++.|+++++.-.... +.+++.-- ..|+.+-. -..+...|...-.+..+. .||..--
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaa 266 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAA 266 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHH
Confidence 788899999999999999999998865532 33443321 22222211 123444555555444443 4553332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---HHhCCCCCCHHHHHHHHHHH
Q 004470 330 NSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDE---MRGLNIIPDLLTYTAIICGF 406 (751)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~~~~p~~~~~~~li~~~ 406 (751)
..-.+.+.+.|+..++-.+++.+-+....|+. +. +..+.+.|+. ++.-++. +..... .+..+...+..+.
T Consensus 267 v~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~~L~slk~-nnaes~~~va~aA 339 (531)
T COG3898 267 VVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGDT--ALDRLKRAKKLESLKP-NNAESSLAVAEAA 339 (531)
T ss_pred HHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCCc--HHHHHHHHHHHHhcCc-cchHHHHHHHHHH
Confidence 23346677778888888888887776444433 22 2233455542 2222211 111111 1455555666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHHhC
Q 004470 407 CLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYC-KAGGMKKAFSLHNNMVHM 460 (751)
Q Consensus 407 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~ 460 (751)
...|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.+.++.
T Consensus 340 lda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 340 LDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 6777777666655555443 566666666655543 347777777777766654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.013 Score=63.69 Aligned_cols=85 Identities=13% Similarity=0.047 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004470 657 MKEAWFLHKEMVQKG-FNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCD 735 (751)
Q Consensus 657 ~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 735 (751)
+..+.+..++..... ...++..|..+.-.....|++++|...++++++.+ |+...|..++..+...|+.++|.+.++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344455555544431 23356788888777778899999999999999965 688899999999999999999999999
Q ss_pred HHHHcCCC
Q 004470 736 AAIECYLV 743 (751)
Q Consensus 736 ~~~~~~~~ 743 (751)
++++....
T Consensus 478 ~A~~L~P~ 485 (517)
T PRK10153 478 TAFNLRPG 485 (517)
T ss_pred HHHhcCCC
Confidence 99988765
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0023 Score=51.91 Aligned_cols=80 Identities=18% Similarity=0.336 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHH
Q 004470 294 FSTIINGYCYLGELQRVLKLIEEMQIKGL-KPNPYTYNSVVRLLCKTS--------KVVEAETILREMMNQGIVPDNVIY 364 (751)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~ 364 (751)
-...|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.++++|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677888888888888888888 788888888887776543 233455666666666666666666
Q ss_pred HHHHHHHHH
Q 004470 365 TTLIDGFCK 373 (751)
Q Consensus 365 ~~li~~~~~ 373 (751)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 666665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0049 Score=61.42 Aligned_cols=288 Identities=15% Similarity=0.115 Sum_probs=159.5
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH--HHHc--CCCC-CHHHHHHHHH
Q 004470 439 DGYCKAGGMKKAFSLHNNMVHMRLTPNV----VTYTALADGLCKSGELETANELLHE--MCRK--GLQL-NIYTYNSIVN 509 (751)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~--m~~~--g~~~-~~~~~~~li~ 509 (751)
.-+|+.|+......+|+..++.|-. |. ..|..|.++|.-.+++++|+++... .... |-+. ....-..|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4467888888888888888877633 33 3455566666666777777765432 1111 1000 1112223333
Q ss_pred HHHHcCCHHHHHHHHHHH----HHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 510 GLCKAGNILQAVKLMEDM----EVAGF-HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~----~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 584 (751)
.+--.|.+++|+....+- .+.|- ......+..+...|...|+.-... .-.+.|-.++.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHH-----------
Confidence 344445555554433321 11110 011222333334443333211000 0001111111110
Q ss_pred CChhHHHHHHHHHHH----cCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHhc
Q 004470 585 GMIEDGEKLLKWMLE----KGL-KPNAATYNPLIKQHCLRNDMRTTAKIYKGMC----AQGITP-DGNTYNILLQGHCKA 654 (751)
Q Consensus 585 g~~~~A~~l~~~~~~----~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~~~~~li~~~~~~ 654 (751)
..++.|.++|.+=++ .|- -.....|..|...|.-.|+++.|+...+.-+ +.|-.. ....+..+..++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 012233333332211 110 0112356667777788899999988766433 233221 345678889999999
Q ss_pred CCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhc
Q 004470 655 RNMKEAWFLHKEMVQ----KG-FNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG-----GLVADREIYYFFVDINFEE 724 (751)
Q Consensus 655 g~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 724 (751)
|+++.|.+.|+.... .| -........+|.+.|.-..+++.|+.++.+-+.. +..-....|..|+.++-..
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999999999887543 22 2224556778999998888999999998875531 1123456788999999999
Q ss_pred CChhHHHHHHHHHHHcCC
Q 004470 725 GNTEITLELCDAAIECYL 742 (751)
Q Consensus 725 g~~~~A~~~~~~~~~~~~ 742 (751)
|..++|..+.+..++...
T Consensus 329 g~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 329 GEHRKALYFAELHLRSSL 346 (639)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 999999999988877653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0089 Score=60.12 Aligned_cols=166 Identities=15% Similarity=0.134 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCC--H
Q 004470 537 FTYTTIMDAYCKSGEMVKAHELLRDMLDK----GLQP-SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEK---GLKPN--A 606 (751)
Q Consensus 537 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---g~~p~--~ 606 (751)
..|......|-..|++++|.+.|.+..+. +-+. -...|......|.+ +++++|.+.+++..+. .-.|+ .
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45667777777788888888888776432 1111 12234444444433 4777887777776642 11222 2
Q ss_pred hhHHHHHHHHHHc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----
Q 004470 607 ATYNPLIKQHCLR-NDMRTTAKIYKGMCAQ----GITPD--GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL----- 674 (751)
Q Consensus 607 ~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p----- 674 (751)
..+..+...|-.. |++++|.+.|++..+. | .+. ..++..++..+.+.|++++|+++|++........
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 3455555566666 6777777777766551 2 111 2345556666677777777777777766542221
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 675 TT-SSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 675 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
+. ..+...+-++...||...|.+.+++...
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 1222333355556777777777777654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0045 Score=61.96 Aligned_cols=131 Identities=13% Similarity=0.083 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 572 VTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQ-HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQG 650 (751)
Q Consensus 572 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 650 (751)
.+|..++...-+.+..+.|..+|.++++.+ ..+..+|...... |...++.+.|.++|+..++. +..+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467777888878888888888888887542 2233444444444 23356666688888888775 44567777777888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 651 HCKARNMKEAWFLHKEMVQKGFNLT---TSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
+.+.|+.+.|..+|++.+.. +.++ ...|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888765 3322 247888888878888888888888888774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.083 Score=47.17 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=106.4
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCcccHHH
Q 004470 253 CWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLK-PNPYTYNS 331 (751)
Q Consensus 253 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ 331 (751)
.|++.-.-.|.+++.+.|++.+|...|++...--+.-|....-.+.++....+++..|...++.+.+.... -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 46777777899999999999999999999887545567777778888888899999999999999876311 13455667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 332 VVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMR 388 (751)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 388 (751)
+.+.+...|++.+|+..|+..... -|+...-......+.+.|+.++|..-+.++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 788999999999999999999886 5666666666677888998888776655544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0014 Score=49.75 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK-KYLEARELFEEMRRG 705 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 705 (751)
+..+|..+...+...|++++|+..|+++++.++. +...|..++.++...| ++++|++.++++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4566777777788888888888888888877654 6777788888888888 688888888877763
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.2 Score=47.45 Aligned_cols=242 Identities=12% Similarity=0.070 Sum_probs=139.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCC--hhhH-HHHHHHHHhcCChhH
Q 004470 127 PILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSD--PHVF-DIFFQVLVEARKLNE 203 (751)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~-~~l~~~~~~~g~~~~ 203 (751)
+++..+..-..++.+.+.+++|..-|+.+-..+..+.-- .++. ..|++-..+ |.+. -+-+.+....|...+
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Y---ey~p---~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqe 140 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYY---EYYP---HVYPGRRGSMVPFSMRILHAELQQYLGNPQE 140 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceee---eecc---ccCCCCcCccccHHHHHHHHHHHHhcCCcHH
Confidence 445555666788888999999988888776554322100 0000 001000001 1111 112333344566655
Q ss_pred HHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 204 ARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQME 283 (751)
Q Consensus 204 A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (751)
.+.-+..+... ....+..+- .+...+...+.|++=.. ..-+.+++.+.-.|.+.-...++.+..
T Consensus 141 sLdRl~~L~~~--------V~~ii~~~e-~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi 204 (366)
T KOG2796|consen 141 SLDRLHKLKTV--------VSKILANLE-QGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVI 204 (366)
T ss_pred HHHHHHHHHHH--------HHHHHHHHH-hccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHH
Confidence 55544444321 111222221 22222455555554433 245666777777788888888888888
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH-----HHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 284 LRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVV-----RLLCKTSKVVEAETILREMMNQGIV 358 (751)
Q Consensus 284 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~ 358 (751)
+...+.+++....|+..-.+.|+.+.|...|++..+..-+.|..+.+.++ ..+.-.+++.+|...+.+....+ +
T Consensus 205 ~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~ 283 (366)
T KOG2796|consen 205 KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-P 283 (366)
T ss_pred HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-C
Confidence 77666677777778888888888888888888776554445555555444 23445667777777777776653 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 004470 359 PDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLN 391 (751)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 391 (751)
.|....|.-.-+..-.|+..+|++.++.|.+..
T Consensus 284 ~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 284 RNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred CchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 355555554444455677778888887777753
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=50.24 Aligned_cols=53 Identities=26% Similarity=0.328 Sum_probs=37.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 652 CKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
.+.|++++|+++|+++.+..+. +...+..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567777777777777776554 6666667777777777777777777777764
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0085 Score=60.03 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 306 ELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMN 354 (751)
Q Consensus 306 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (751)
+.+.|.++|+...+. ++.+...|...++.+.+.|+.+.|..+|+..+.
T Consensus 51 d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 51 DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAIS 98 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 333344444444433 222333344444444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.013 Score=51.83 Aligned_cols=87 Identities=13% Similarity=0.009 Sum_probs=59.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEA 695 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 695 (751)
+...|++++|..+|.-+...+. -+..-+..|..++-..+++++|+..|..+...+.. |+..+-..+.++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 4567777777777777766442 24555666667777777777777777776665443 555555667777777777777
Q ss_pred HHHHHHHHH
Q 004470 696 RELFEEMRR 704 (751)
Q Consensus 696 ~~~~~~~~~ 704 (751)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777777776
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.095 Score=55.61 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=16.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 004470 684 KGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
.+|-+.|+-.||..+++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 4566778888888888887654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0017 Score=49.86 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=34.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 649 QGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
..|.+.+++++|++.++.++..++. ++..|...+.++.+.|++++|.+.++++++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455666666666666666665444 5555666666666666666666666666654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.082 Score=50.15 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHH
Q 004470 681 ALIKGFLKRKKYLEARELFEEMRRGGLVAD----REIYYFFVDINFEEGNTEITL 731 (751)
Q Consensus 681 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 731 (751)
.++.-|.+.|.+..|..-++.+++. -|+ ......++.++.+.|..+.|.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4677788899999999999998884 232 245567778888888887554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0095 Score=54.84 Aligned_cols=103 Identities=16% Similarity=0.236 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 004470 255 NTASYNIMIHCLCR-----FGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTY 329 (751)
Q Consensus 255 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 329 (751)
|-.+|..+++.|.+ +|.++=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F----------- 112 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF----------- 112 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh-----------
Confidence 55666666666653 47777777788888888888888889888887654 3321 111111110
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 330 NSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGN 376 (751)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 376 (751)
.- .-.+.+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 113 ----~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ----MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 00 112345577777777777777777777777777766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.47 Score=48.19 Aligned_cols=62 Identities=27% Similarity=0.337 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 294 FSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLID 369 (751)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 369 (751)
|..+...-...|+.+-|..+++. .|+. ..=+..+.+.|+.+.| +.+..+.| .||. +|..|+.
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~~------Ep~~---~~qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~ 64 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLEL------EPRA---SKQVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLH 64 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHHc------CCCh---HHHHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHH
Confidence 45555556667777777776652 3332 1224455566666555 45555554 3444 4444444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.5 Score=48.32 Aligned_cols=132 Identities=18% Similarity=0.139 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 004470 570 SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKG-LKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNT-YNIL 647 (751)
Q Consensus 570 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l 647 (751)
-...|..+++.-.+..-++.|..+|-++.+.| ..+++.++++++..+ ..|+...|..+|+--... -||... .+-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34567888888888888999999999999888 677888899998877 467888899999865553 344433 3455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 648 LQGHCKARNMKEAWFLHKEMVQKGFNLT--TSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
+.-+...|+-+.|..+|+..+++ +..+ ..+|..++.--..-|+...|..+=++|.+.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 66677889999999999977764 2223 468888888888889998888888888774
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0039 Score=47.90 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=51.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004470 136 VQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYG 215 (751)
Q Consensus 136 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 215 (751)
.+++...++++.|...++.++..+ |.++..+...+.++.+.|++++|.+.|++.++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~----------------------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~- 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD----------------------PDDPELWLQRARCLFQLGRYEEALEDLERALEL- 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC----------------------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH-
Confidence 456777889999999888888765 677788888899999999999999999999887
Q ss_pred CccCHHhHH
Q 004470 216 LVISVDSCN 224 (751)
Q Consensus 216 ~~p~~~~~~ 224 (751)
.|+.....
T Consensus 59 -~p~~~~~~ 66 (73)
T PF13371_consen 59 -SPDDPDAR 66 (73)
T ss_pred -CCCcHHHH
Confidence 45554433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0073 Score=57.80 Aligned_cols=102 Identities=19% Similarity=0.134 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CCCHHHHHHHH
Q 004470 643 TYNILLQGHCKARNMKEAWFLHKEMVQKGFN--LTTSSYNALIKGFLKRKKYLEARELFEEMRRG-GL-VADREIYYFFV 718 (751)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~l~ 718 (751)
.|+.-+. +.+.|++.+|...|...++..+. ..+..+-.|+..++..|++++|..+|..+.+. +- +.-++.+.-|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4665554 45678899999999999987433 13446667899999999999999999999873 21 23458888999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 719 DINFEEGNTEITLELCDAAIECYLVGK 745 (751)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (751)
.+..+.|+.++|+..|+++++.|+...
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 999999999999999999999987643
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.53 Score=47.30 Aligned_cols=296 Identities=14% Similarity=0.138 Sum_probs=164.5
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHH
Q 004470 294 FSTIINGYCY--LGELQRVLKLIEEMQIKGLKPNPYTYNSVVRL--LCKTSKVVEAETILREMMNQGIVPDNVI--YTTL 367 (751)
Q Consensus 294 ~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~l 367 (751)
|..|-.++.. .|+-..|.++-.+..+. +..|......|+.+ -.-.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444433 45666666655554322 22244433333332 23467788888888877763 22211 1112
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH--
Q 004470 368 IDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRG-LEPDEIV--YTALIDGYC-- 442 (751)
Q Consensus 368 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~--~~~li~~~~-- 442 (751)
.-.--+.|+.+.|...-++.-..-.. -...+...+...|..|+++.|+++++.-.... +.++..- -..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 22223567777777777776654332 35566777778888888888888887655432 2333221 112222111
Q ss_pred -HcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004470 443 -KAGGMKKAFSLHNNMVHMRLTPNVVTY-TALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQA 520 (751)
Q Consensus 443 -~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 520 (751)
-.-+...|...-.+..+ +.|+.+-- ..-...+.+.|+..++-.+++.+-+..+.|+.. . +..+.+.|+. +
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gdt--a 311 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGDT--A 311 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCCc--H
Confidence 11234445544444443 34554322 233466788889999999998888875555432 2 2234455543 2
Q ss_pred HHHHHH---HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHH
Q 004470 521 VKLMED---MEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM-SGMIEDGEKLLKW 596 (751)
Q Consensus 521 ~~~~~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~ 596 (751)
..-++. +.... +.+..+...+..+-...|++..|..--+..... .|....|..|.+.-.. .|+-.++...+.+
T Consensus 312 ~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 312 LDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 222222 22221 345566667777777788888877766666543 6677777777765543 4888888888877
Q ss_pred HHHcCCCCC
Q 004470 597 MLEKGLKPN 605 (751)
Q Consensus 597 ~~~~g~~p~ 605 (751)
.+..--.|+
T Consensus 389 av~APrdPa 397 (531)
T COG3898 389 AVKAPRDPA 397 (531)
T ss_pred HhcCCCCCc
Confidence 776544443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.024 Score=52.35 Aligned_cols=86 Identities=22% Similarity=0.324 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 004470 360 DNVIYTTLIDGFCK-----MGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLT----------------GKMVEAEKL 418 (751)
Q Consensus 360 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~A~~~ 418 (751)
+..+|..+++.|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44444444444442 233444444444455555555555555554443321 223446666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004470 419 FHEMLGRGLEPDEIVYTALIDGYCKAG 445 (751)
Q Consensus 419 ~~~m~~~~~~p~~~~~~~li~~~~~~g 445 (751)
+++|...|+.||..++..+++.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 666666666666666666666664444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.7 Score=47.51 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=57.5
Q ss_pred ChhHHHHHHHHHHHcCCCCC----HhhHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 586 MIEDGEKLLKWMLEKGLKPN----AATYNPLIKQ--HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKE 659 (751)
Q Consensus 586 ~~~~A~~l~~~~~~~g~~p~----~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 659 (751)
.+..-.++-+-+.+.|+.|- ...-|.|.++ +..+|++.++.-.-.-+.+ +.|++.+|..++-++....++++
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHH
Confidence 34444555555556666553 2344455444 4577888877655544444 67888888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH
Q 004470 660 AWFLHKEMVQKGFNLTTSSYNAL 682 (751)
Q Consensus 660 A~~~~~~~~~~~~~p~~~~~~~l 682 (751)
|..++..+ +|+..+++.-
T Consensus 514 A~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 514 AWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred HHHHHHhC-----CCchhhHHHH
Confidence 88887753 4566666544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0034 Score=48.98 Aligned_cols=63 Identities=22% Similarity=0.302 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 677 SSYNALIKGFLKRKKYLEARELFEEMRRG--GLVA---D-REIYYFFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 677 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
.+++.++..|...|++++|+..|+++++. ...+ + ..++..++.++...|++++|+++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777776642 1111 1 34566667777777777777777777765
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.13 Score=45.82 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 004470 643 TYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR-----GGLVADREIYY 715 (751)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 715 (751)
....++..+...|++++|..+.+.++...+. +...|..++.+|...|+..+|.+.|+++.+ .|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4456677777888889999888888887655 788888888999999999988888888753 58888776643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.54 Score=44.61 Aligned_cols=174 Identities=11% Similarity=-0.052 Sum_probs=118.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHH
Q 004470 574 FNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD-----GNTYNILL 648 (751)
Q Consensus 574 ~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li 648 (751)
-+.++..+.-.|.+.-...++++.++...+.+......|++.-.+.||.+.|...|++..+..-..| ........
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 4556666666788888899999999877667788888888888999999999999997765322223 33333334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 004470 649 QGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEE---- 724 (751)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 724 (751)
..|.-++++.+|...+.+....+.. |+...|.-+-++.-.|+..+|++.++.|.+. .|.+.+-..++-.++..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~tmyEL~ 336 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLTTMYELE 336 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHHHHHHHHH
Confidence 4566778999999999999888655 7777777777777789999999999999985 45544444333222221
Q ss_pred -CChhHHHHHHHHHHHcCCCCCCcccCC
Q 004470 725 -GNTEITLELCDAAIECYLVGKATDENK 751 (751)
Q Consensus 725 -g~~~~A~~~~~~~~~~~~~~~~~~~~~ 751 (751)
.+.-+....+.+.+. +..|++.|.+|
T Consensus 337 Ys~~~~~k~~l~~~ia-~~~~d~f~~~c 363 (366)
T KOG2796|consen 337 YSRSMQKKQALLEAVA-GKEGDSFNTQC 363 (366)
T ss_pred hhhhhhHHHHHHHHHh-ccCCCcccchh
Confidence 122233344444443 33456555543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.59 Score=44.98 Aligned_cols=222 Identities=18% Similarity=0.059 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004470 480 GELETANELLHEMCRKGLQL-NIYTYNSIVNGLCKAGNILQAVKLMEDMEVA-GFHPDTFTYTTIMDAYCKSGEMVKAHE 557 (751)
Q Consensus 480 g~~~~A~~l~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 557 (751)
+....+...+.......... ....+......+...++...+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 45555555555555443221 2445555666666666677666666666542 123444555555566666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 558 LLRDMLDKGLQPSVVTFNVLMN-GFCMSGMIEDGEKLLKWMLEKGL--KPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 558 ~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~l~~~~~~~g~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666666543222 112222222 45566666666666666644211 01222333333334555666666666666655
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 635 QGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 635 ~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.. .. ....+..+...+...+++++|...+......... ....+..+...+...|..+++...+++..+
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 12 2444555555556666666666666666554222 233344444444444556666666665555
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.73 E-value=1.3 Score=49.13 Aligned_cols=180 Identities=14% Similarity=0.160 Sum_probs=116.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHH-hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVD-SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCL 266 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 266 (751)
...-+..+.+..+++-|+.+-.. .+..++.. .+..--+....+.|++++|...|-+.+.. ..| ..+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 44556777888888888876553 33233322 12222233334679999999998777654 222 3466667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 004470 267 CRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAE 346 (751)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 346 (751)
....++.+-..+++.+.+.|.. +...-..|+..|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7777777888888888888874 55556788999999999988777776543 2211 223556677777777777776
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 347 TILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMR 388 (751)
Q Consensus 347 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 388 (751)
.+-..... .......++ -..|++++|++.+..+.
T Consensus 484 ~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 65544332 333444443 35688999999887764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.84 Score=46.37 Aligned_cols=102 Identities=21% Similarity=0.240 Sum_probs=52.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 367 LIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGG 446 (751)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 446 (751)
-|.-+...|+...|.++-.+.. .|+..-|-..+.+++..+++++-.++-.. + -++.-|...+..|.+.|.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCC
Confidence 3444455566555555544442 24555666666666666666655443221 1 123445555666666666
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 447 MKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANEL 488 (751)
Q Consensus 447 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 488 (751)
..+|..+..++ .+..-+..|.+.|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 66665555441 113444555666666655543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.23 Score=47.09 Aligned_cols=69 Identities=17% Similarity=0.110 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCc-cCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLV-ISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC 253 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~ 253 (751)
+..+...+..+...|++.+|.+.|+.+...-+. |-.......++......|+++.|...|++++..-|.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 345556677788888888888888888765221 112222222333333556777777777666655443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.027 Score=55.39 Aligned_cols=92 Identities=10% Similarity=-0.008 Sum_probs=51.6
Q ss_pred HhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 004470 140 VAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVIS 219 (751)
Q Consensus 140 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 219 (751)
...|++++|...++.+++.. ++.+..+.++..|+.+|...|++++|...|..+++. .|+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y-------------------P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~ 212 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY-------------------PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPK 212 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC-------------------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC
Confidence 34566777776676666543 111222455666677777777777777777776654 232
Q ss_pred ---HHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCC
Q 004470 220 ---VDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGI 252 (751)
Q Consensus 220 ---~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~ 252 (751)
.......++.++...|+.++|.++|+++++..|
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 222222234444456677777777776666543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.037 Score=46.09 Aligned_cols=89 Identities=15% Similarity=0.037 Sum_probs=42.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH---HHHHHHHHHHhcCC
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK-GFNLTTS---SYNALIKGFLKRKK 691 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~---~~~~l~~~~~~~g~ 691 (751)
....|+++.|++.|.+.+.. .+-....||.-..++.-.|+.++|++-++++++. |.. +.. .|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 34455555555555555542 1123444555555555555555555555555543 221 211 22223333444555
Q ss_pred HHHHHHHHHHHHHCC
Q 004470 692 YLEARELFEEMRRGG 706 (751)
Q Consensus 692 ~~~A~~~~~~~~~~~ 706 (751)
-+.|..-|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555555544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.19 Score=46.19 Aligned_cols=161 Identities=15% Similarity=0.142 Sum_probs=96.7
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHH--HH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTA--SY 259 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~ 259 (751)
|.-|.+|+.|+--+...|+++.|.+.|+...+.++.-+-...|..+.-++ .|++.-|.+-|.+.-..++. |++ .|
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY--~gR~~LAq~d~~~fYQ~D~~-DPfR~LW 172 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY--GGRYKLAQDDLLAFYQDDPN-DPFRSLW 172 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee--cCchHhhHHHHHHHHhcCCC-ChHHHHH
Confidence 77889999999999999999999999999998854444445555555544 69999999988888777554 433 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------cccHHH
Q 004470 260 NIMIHCLCRFGKIKEAHLLLL-QMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN-------PYTYNS 331 (751)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~ 331 (751)
--++ -+.-+..+|..-+. +... .|..-|...|-.|.- |+.. ...+++++.... ..+ ..||--
T Consensus 173 LYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a-~~n~~~Ae~LTEtyFY 242 (297)
T COG4785 173 LYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKADA-TDNTSLAEHLTETYFY 242 (297)
T ss_pred HHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc-cchHHHHHHHHHHHHH
Confidence 2222 23456666665443 3332 344455544443322 1111 112233332211 101 345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 332 VVRLLCKTSKVVEAETILREMMNQ 355 (751)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~ 355 (751)
|.+.+...|+.++|..+|+-.+..
T Consensus 243 L~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 243 LGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHhccccHHHHHHHHHHHHHH
Confidence 666666677777777766665543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.59 E-value=1.4 Score=48.85 Aligned_cols=177 Identities=14% Similarity=0.121 Sum_probs=106.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 004470 260 NIMIHCLCRFGKIKEAHLLLLQMELRGCSPDV--VSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLC 337 (751)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 337 (751)
..-++.+++...++-|+.+...-. ..++. .......+-+.+.|++++|...|-+-... +.| ..+|.-|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 445667777888888877664422 11221 12223344455788888888887766543 222 23456666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 338 KTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEK 417 (751)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 417 (751)
...++.+-...++.+.+.|+. +...-..|+.+|.|.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.-
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHH
Confidence 666777777778888888765 44455778888888888888777665544 2211 1123445566666666666665
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004470 418 LFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNM 457 (751)
Q Consensus 418 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 457 (751)
+-..... .......++ -..|++++|++.+..+
T Consensus 485 LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 5443321 333333333 4467788888877665
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.2 Score=45.71 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=106.4
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG-ITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALI 683 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 683 (751)
-..+|.+.+....+...++.|..+|-+..+.| ..+++..+++++..++ .|+..-|.++|+--+..- ..+..--...+
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl 473 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYL 473 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHH
Confidence 34667888888888888999999999999988 5678888999988765 588999999999877653 32455556677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 684 KGFLKRKKYLEARELFEEMRRGGLVAD--REIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
.-+..-++-+.|..+|+..+++ +..+ ..+|..++.-=..-|+...|..+-+++.+...
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 7888899999999999987764 2333 57788888777788999888888888776543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0093 Score=46.47 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 642 NTYNILLQGHCKARNMKEAWFLHKEMVQK----GFN-LT-TSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.+|+.+...|...|++++|+..|++.++. |.. |+ ..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777778888888888887777642 211 11 45677788888888888888888887764
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.12 Score=53.82 Aligned_cols=118 Identities=11% Similarity=0.053 Sum_probs=73.7
Q ss_pred hHHHHHHHHhhh---hCCCCChhHHHHHHHHHHhc---C------ChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhh
Q 004470 111 YRLVLDFFDWAC---LRREPILEARCIVVQISVAA---K------DLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTY 178 (751)
Q Consensus 111 ~~~al~~f~~~~---~~~~~~~~~~~~~~~~l~~~---~------~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (751)
.+.|+..|..+. ..+|....+|+.++...... | ...+|..+.++++..+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld------------------- 334 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT------------------- 334 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-------------------
Confidence 366888888887 55676677777665443311 1 1224444444544444
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCC
Q 004470 179 KDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGI 252 (751)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~ 252 (751)
+.++.+...++.++.-.|+++.|...|+++... .|+....-...+.+..-.|+.++|.+..++..+..|
T Consensus 335 ---~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 335 ---TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred ---CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 566777777777777777777777777777766 566555444444444445777777777777666643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.12 Score=45.71 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=44.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAW 661 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 661 (751)
...|++++|..+|.-+...+.. +..-+..|..++-..+++++|+..|......+. -|+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 3456666666666655543222 333344455555555666666666655544321 23333334455566666666666
Q ss_pred HHHHHHHH
Q 004470 662 FLHKEMVQ 669 (751)
Q Consensus 662 ~~~~~~~~ 669 (751)
..|+..++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66665555
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.085 Score=53.38 Aligned_cols=100 Identities=12% Similarity=0.007 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 641 GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDI 720 (751)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (751)
..++..+..+|.+.+++.+|++.-++.++.+.. |.-..-.-+.+|...|+++.|+..|+++++.. |.|..+-..++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345677888899999999999999999988655 77777788899999999999999999999864 5566666667666
Q ss_pred HHhcCCh-hHHHHHHHHHHHcCC
Q 004470 721 NFEEGNT-EITLELCDAAIECYL 742 (751)
Q Consensus 721 ~~~~g~~-~~A~~~~~~~~~~~~ 742 (751)
-.+...+ +...++|..|+.+--
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 5555444 445888888887643
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.28 Score=51.12 Aligned_cols=107 Identities=18% Similarity=0.124 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 004470 641 GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN-LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREI-YYFFV 718 (751)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~ 718 (751)
..+-..|..++.+.|+.+||++.+++|.+..+. .+..+...|+.+|...+.+.++..++.+--+...+..... |...+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 334445677777888888888888888765332 2345777888888888888888888888655443333333 22222
Q ss_pred HHHHhcCC---------------hhHHHHHHHHHHHcCC-CCCCc
Q 004470 719 DINFEEGN---------------TEITLELCDAAIECYL-VGKAT 747 (751)
Q Consensus 719 ~~~~~~g~---------------~~~A~~~~~~~~~~~~-~~~~~ 747 (751)
-.....|+ -..|.+.+.++++.+. +|+-+
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 12222232 1346677888888764 44433
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.12 Score=51.09 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=22.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004470 476 LCKSGELETANELLHEMCRKG--LQLNIYTYNSIVNGLCKAGNILQAVK 522 (751)
Q Consensus 476 ~~~~g~~~~A~~l~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 522 (751)
+....+.++|+..|.....+- ..---.+|..+..+.+..|.+++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 344555666666665544330 01112344455555555555555443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.32 E-value=2.4 Score=47.09 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCh
Q 004470 656 NMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKR----KKYLEARELFEEMRRGGLVADREIYYFFVDINFE----EGNT 727 (751)
Q Consensus 656 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 727 (751)
+.+.+...+.+....| +......+.+.|... .+++.|...+....+.+ ......++..+-. .. +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-h
Confidence 4555666666665554 455666666666543 24677777777776654 3333333333221 12 5
Q ss_pred hHHHHHHHHHHHcC
Q 004470 728 EITLELCDAAIECY 741 (751)
Q Consensus 728 ~~A~~~~~~~~~~~ 741 (751)
..|.++++.+.+.+
T Consensus 526 ~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 526 HLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHHhcC
Confidence 67777777776643
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=1 Score=43.04 Aligned_cols=188 Identities=9% Similarity=-0.022 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 129 LEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
...+..-+......|++++|...++.+.+.. +..|..+.+...++.++.+.+++++|+...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-------------------p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~ 94 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-------------------PFSPYSEQAQLDLAYAYYKNGEYDLALAYI 94 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------------CCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3445566777788999999999999987654 111344678889999999999999999999
Q ss_pred HHHHhCCCccCHHhHHHHHHHHHh------CCCCH---HHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 209 EKLLNYGLVISVDSCNLFLSRLSN------TCDGL---RMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLL 279 (751)
Q Consensus 209 ~~~~~~g~~p~~~~~~~ll~~l~~------~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 279 (751)
++-++.-+......|-..|.++.. ...+. ..|..-|++++..=|. +.+ ..+|....
T Consensus 95 drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn-S~Y--------------a~dA~~~i 159 (254)
T COG4105 95 DRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN-SRY--------------APDAKARI 159 (254)
T ss_pred HHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC-Ccc--------------hhhHHHHH
Confidence 999876433333445555544431 11222 3344444444443221 111 11121111
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 280 LQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPY---TYNSVVRLLCKTSKVVEAETILREMMNQ 355 (751)
Q Consensus 280 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (751)
..+... =..-=..+...|.+.|.+-.|..-+++|.+. .+-... .+-.+..+|...|-.++|...-.-+...
T Consensus 160 ~~~~d~----LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 160 VKLNDA----LAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHH----HHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 111110 0000113445566777777777777777665 222222 3344456666677777766655544443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.6 Score=47.91 Aligned_cols=32 Identities=13% Similarity=0.010 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 674 LTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 674 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
.+-..+.+++.+..-.|++++|.+.+++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 35556677888888899999999999999875
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.13 Score=53.56 Aligned_cols=149 Identities=14% Similarity=0.075 Sum_probs=110.6
Q ss_pred ChhHHHHHHHHHHHc-CCCCC-HhhHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004470 586 MIEDGEKLLKWMLEK-GLKPN-AATYNPLIKQHCL---------RNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKA 654 (751)
Q Consensus 586 ~~~~A~~l~~~~~~~-g~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 654 (751)
..+.|..+|.+.... .+.|+ ...|..+..++.. ..+..+|.++-++.++.+ +-|......+...+.-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 567888999999832 24555 4556655555432 234667888888888875 44888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHH
Q 004470 655 RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD---REIYYFFVDINFEEGNTEITL 731 (751)
Q Consensus 655 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 731 (751)
|+++.|...|+++...++. ...+|....+.+.-.|+.++|.+.++++++. .|. ..+....++.|+..+ .++|+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 9999999999999987655 6778888888889999999999999998875 443 244445555677665 78888
Q ss_pred HHHHHHHH
Q 004470 732 ELCDAAIE 739 (751)
Q Consensus 732 ~~~~~~~~ 739 (751)
++|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 88755433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.028 Score=58.08 Aligned_cols=100 Identities=11% Similarity=-0.078 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004470 639 PDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTT--SSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYF 716 (751)
Q Consensus 639 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 716 (751)
.+...++.+..+|.+.|++++|+..|++.++.++.... .+|..++.+|.+.|++++|+..++++++.+ .+ .|..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~~ 148 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFST 148 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHHH
Confidence 35788999999999999999999999999987655221 469999999999999999999999999853 22 1221
Q ss_pred HHH--HHHhcCChhHHHHHHHHHHHcCC
Q 004470 717 FVD--INFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 717 l~~--~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
+.. .+..-.+.++..++++.+.+-|.
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 111 12223345577778888877775
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.12 Score=50.58 Aligned_cols=114 Identities=10% Similarity=-0.031 Sum_probs=52.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHH----HHHHHHHHcCCHHH
Q 004470 549 SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYN----PLIKQHCLRNDMRT 624 (751)
Q Consensus 549 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~----~l~~~~~~~g~~~~ 624 (751)
.|+..+|-..++++++. .|.|..++..--+++.-.|+.+.-...++++... ..+|...|. .+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45555555555555543 3445555555555555555555555555554433 122222221 12222334455555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 625 TAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHK 665 (751)
Q Consensus 625 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 665 (751)
|.+.-++..+.+ +.|......+...+...|+.+++.++..
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 555555554432 2234444444444455555555555444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.27 Score=43.76 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 004470 363 IYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLG-----RGLEPDEIV 433 (751)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 433 (751)
+...++..+...|++++|..+.+.+....+. |...|..+|.++...|+..+|++.|+.+.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555555566666666666666554433 555566666666666666666666655432 255555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.4 Score=51.87 Aligned_cols=184 Identities=15% Similarity=0.147 Sum_probs=116.3
Q ss_pred HHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHH
Q 004470 114 VLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQ 193 (751)
Q Consensus 114 al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 193 (751)
..-.|+-+.+--|+. ...++.+....|+-+.+.++|.+..+.+++. .++..++- -+|...+.
T Consensus 176 G~G~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~--~~la~L~L-------------L~y~~~~~ 237 (468)
T PF10300_consen 176 GFGLFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIR--SPLAALVL-------------LWYHLVVP 237 (468)
T ss_pred HHHHHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcc--hHHHHHHH-------------HHHHHHHH
Confidence 445566666655544 4456677778899999999999987754322 22221111 12233333
Q ss_pred HHH----hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC---cCHHHHHHHHHHH
Q 004470 194 VLV----EARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC---WNTASYNIMIHCL 266 (751)
Q Consensus 194 ~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~ 266 (751)
.++ .....+.|.+++..+.+. .|+...+...-+.+....|++++|.+.|+++...... .....+-.++-.+
T Consensus 238 ~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~ 315 (468)
T PF10300_consen 238 SFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCH 315 (468)
T ss_pred HHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHH
Confidence 332 356788899999999987 8999999999999998899999999999987642111 1223344556667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHH
Q 004470 267 CRFGKIKEAHLLLLQMELRGCSPDVVSFSTIING-YCYLGEL-------QRVLKLIEEMQ 318 (751)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~-------~~A~~~~~~m~ 318 (751)
+-.+++++|.+.|..+.+..-. +...|.-+..+ +...|+. ++|.++|.+..
T Consensus 316 ~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 7788888888888888764321 22223222222 2335655 66666666553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.8 Score=38.64 Aligned_cols=139 Identities=17% Similarity=0.148 Sum_probs=76.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 583 MSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWF 662 (751)
Q Consensus 583 ~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 662 (751)
-.|..++..++..+.... .+..-||.++--....-+-+-..+.++..=+ --|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 356777777777766654 2444455554443333333333344333322 1111 12333443333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 663 LHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 663 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
.+-.+ | .+....+..++.+.++|+-+.-.+++..+.+.+ .++++....++.+|.+.|+..+|-+++.++.++|+
T Consensus 78 C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33222 1 134455566778888999999888888887644 78899999999999999999999999999999986
Q ss_pred C
Q 004470 743 V 743 (751)
Q Consensus 743 ~ 743 (751)
.
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.95 E-value=3.4 Score=45.46 Aligned_cols=108 Identities=13% Similarity=0.161 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFL 687 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 687 (751)
+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.++...++|++-.++-+.+. .+.-|...+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444455567777788877776654 4677777777788888888877666544332 3566777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 004470 688 KRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELC 734 (751)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 734 (751)
+.|+.+||.+++-+.. +.. -.+.+|.+.|++.+|.++-
T Consensus 756 ~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence 8888888888776642 211 3555777777777776643
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.39 Score=51.98 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=82.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 004470 619 RNDMRTTAKIYKGMCAQGITPDGNTYNI-LLQGHCKARNMKEAWFLHKEMVQKG---FNLTTSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~ 694 (751)
..+.+.|.++++.+.+. -|+...|.. -.+.+...|++++|++.|+++.... .......+--+++.+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45678888888888874 466555433 3566778889999999988766421 11233456677888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCh-------hHHHHHHHHHHHc
Q 004470 695 ARELFEEMRRGGLVADREIYYF-FVDINFEEGNT-------EITLELCDAAIEC 740 (751)
Q Consensus 695 A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~-------~~A~~~~~~~~~~ 740 (751)
|.+.|..+.+.. .-...+|.. .+-++...|+. ++|.+++.++-..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999998854 334444443 33566777888 8888888777543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.69 Score=43.49 Aligned_cols=208 Identities=13% Similarity=0.115 Sum_probs=103.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMI 263 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 263 (751)
....|.--+.+|....++++|...+.++.+. ...+...+ .....++.|.-+.+++... +--+..|+.-.
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf--------hAAKayEqaamLake~~kl--sEvvdl~eKAs 98 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF--------HAAKAYEQAAMLAKELSKL--SEVVDLYEKAS 98 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH--------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHH
Confidence 3455666777888889999999988888743 11111111 1223344455555555443 11233455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHh--cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 004470 264 HCLCRFGKIKEAHLLLLQMEL--RGCSPDV--VSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKT 339 (751)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~--~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 339 (751)
..|...|..+.|-..+++.-+ .++.|+. ..|..-.......++...|.++ |....+++.+.
T Consensus 99 ~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhh
Confidence 677777877777777766433 1233332 1222222222222333333222 33344556666
Q ss_pred CCHHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCC
Q 004470 340 SKVVEAETILREMMNQG----IVPD-NVIYTTLIDGFCKMGNVAAAYRLFDEMRGLN---IIPDLLTYTAIICGFCLTGK 411 (751)
Q Consensus 340 g~~~~A~~~~~~m~~~g----~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~ 411 (751)
.++++|-..+.+-.... --++ ...|...|-.|.-..++..|.+.+++-.+.+ -.-+..+...|+.+| ..|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 66666655444322110 0111 1234455555666667777777776643321 112445555555554 3455
Q ss_pred HHHHHHH
Q 004470 412 MVEAEKL 418 (751)
Q Consensus 412 ~~~A~~~ 418 (751)
.+++..+
T Consensus 243 ~E~~~kv 249 (308)
T KOG1585|consen 243 IEEIKKV 249 (308)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.57 Score=50.06 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-------
Q 004470 465 NVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTF------- 537 (751)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------- 537 (751)
+..+...+...+.+...+.-|.++|..|-+. ..+++.+...+++++|..+-+...+. .||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 4445555555566666777788888777432 34567777888888888887766543 34432
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004470 538 ----TYTTIMDAYCKSGEMVKAHELLRDMLD 564 (751)
Q Consensus 538 ----~~~~li~~~~~~g~~~~A~~~~~~~~~ 564 (751)
-|...-.+|.+.|+-.+|.++++++..
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 123334466677777777777777654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.49 Score=41.90 Aligned_cols=125 Identities=11% Similarity=0.006 Sum_probs=70.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHH---HHHHHHHHHhcCC
Q 004470 195 LVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTAS---YNIMIHCLCRFGK 271 (751)
Q Consensus 195 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~ 271 (751)
+.+.++.++|+.-|..+-+.|...-......-...+....|+...|...|+++-.....|-..- .-.-.-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 4677888888888888877665443333344444444456777777777777766544443321 1111123445666
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 272 IKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQI 319 (751)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 319 (751)
+++.....+.+...+-+--...-..|.-+-.+.|++.+|.++|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666666665555443322333344455555566666666666666554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.9 Score=44.28 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=15.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 409 TGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGY 441 (751)
Q Consensus 409 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 441 (751)
.|+.++|++++..++...-.++..+|..+++.|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 455555555555543333344444444444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.37 Score=41.72 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHcCCCCCC
Q 004470 727 TEITLELCDAAIECYLVGKA 746 (751)
Q Consensus 727 ~~~A~~~~~~~~~~~~~~~~ 746 (751)
..+|..-|+++++.++...-
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 67888888888888776443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.13 Score=53.48 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=57.6
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 604 PNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDG----NTYNILLQGHCKARNMKEAWFLHKEMVQK 670 (751)
Q Consensus 604 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 670 (751)
.+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|.+.|+.++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999985 5653 35899999999999999999999999986
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.71 E-value=5.7 Score=46.23 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 004470 469 YTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFT--YTTIMDAY 546 (751)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~ 546 (751)
|.+..+.+...+.+++|.-.|+..-+. .-.+.+|...|++.+|+.+..++.. ..+... -..|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHH
Confidence 334444445556666666666554221 1235566667777777777666542 122222 14555666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004470 547 CKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKW 596 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 596 (751)
...+++-+|-++..+.... ....+..||+...+++|..+...
T Consensus 1010 ~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 6677777776666665532 12234445555666666655443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.1 Score=50.12 Aligned_cols=103 Identities=10% Similarity=-0.008 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 132 RCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKL 211 (751)
Q Consensus 132 ~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 211 (751)
.+..+--+..+|+|..|...+..+++.- +..+-.+.++..|+.++..+|++++|..+|..+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-------------------P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~ 204 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-------------------PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARV 204 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------CCCcccchhHHHHHHHHHhcccchHHHHHHHHH
Confidence 3344444555677777777777776652 222334556677777777777777777777777
Q ss_pred HhC-CCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC
Q 004470 212 LNY-GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC 253 (751)
Q Consensus 212 ~~~-g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~ 253 (751)
.+. +-.|.......-|+......|+.++|...|+++++.-|.
T Consensus 205 ~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 205 VKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 654 111222222333444444567777777777777766443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=2.2 Score=40.87 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHH
Q 004470 682 LIKGFLKRKKYLEARELFEEMRRGGLVAD---REIYYFFVDINFEEGNTEITLELC 734 (751)
Q Consensus 682 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 734 (751)
+++-|.+.|.+..|..-++.|++. .+.. .+.+..+..+|.+.|-.++|.+.-
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 344555666666666666666653 2222 233334445566666666665543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.1 Score=37.79 Aligned_cols=59 Identities=20% Similarity=0.151 Sum_probs=26.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGF 672 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 672 (751)
+..+..+|+-++-.+++.++.+. -.+++...-.+..+|.+.|+..+|-+++.++-++|.
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444555555555555554432 134445555555555555555555555555555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.27 Score=41.22 Aligned_cols=96 Identities=18% Similarity=0.097 Sum_probs=72.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004470 135 VVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNY 214 (751)
Q Consensus 135 ~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 214 (751)
-+-.+...|+++.|...+.+.+... |.++++|+.-++++.-+|+.++|++-++++++.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~----------------------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLA----------------------PERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhc----------------------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3456677899999999998877543 788999999999999999999999999999875
Q ss_pred CCccCHHhHHHHH--HHHHhCCCCHHHHHHHHHhchhcCC
Q 004470 215 GLVISVDSCNLFL--SRLSNTCDGLRMVVKSFTEFPELGI 252 (751)
Q Consensus 215 g~~p~~~~~~~ll--~~l~~~~~~~~~a~~~~~~~~~~~~ 252 (751)
.-.-....|.... +.+++..|+-+.|+.-|+.+.+.|-
T Consensus 107 ag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 107 AGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred cCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 2222333443332 3455566888888888888877763
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.064 Score=54.23 Aligned_cols=71 Identities=18% Similarity=0.113 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCc
Q 004470 676 TSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLVGKAT 747 (751)
Q Consensus 676 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 747 (751)
...++.+.-+|.+.+++.+|++..++.++.+ ++|....+.-+.++...|+++.|+..|+++++..+..+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence 3467788889999999999999999999986 7888889999999999999999999999999988766543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.8 Score=47.88 Aligned_cols=23 Identities=9% Similarity=0.283 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 004470 330 NSVVRLLCKTSKVVEAETILREM 352 (751)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m 352 (751)
..|+.++...+.+.++..++.+-
T Consensus 299 enLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 299 ENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHh
Confidence 33444444444444444444443
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.032 Score=37.63 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHH
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFL 227 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 227 (751)
|.++..|+.+|.+.|++++|.++|+++++. .|+....-..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~L 41 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRAL 41 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHh
Confidence 356788999999999999999999999987 67765444333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=2.6 Score=40.25 Aligned_cols=200 Identities=19% Similarity=0.079 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 004470 467 VTYTALADGLCKSGELETANELLHEMCRK-GLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMD- 544 (751)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~- 544 (751)
..+......+...+++..+...+...... ........+......+...++...+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444444455555554444444331 112233334444444444444455555555444332111 111111111
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCH
Q 004470 545 AYCKSGEMVKAHELLRDMLDKGL--QPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDM 622 (751)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 622 (751)
.+...|+++.|...+.+...... ......+......+...++.+.|...+..............+..+...+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 34445555555555554433110 0112222222223334445555555555444431110233444444444444455
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 623 RTTAKIYKGMCAQGITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
+.|...+...... .|+ ...+..+...+...+..+++...+.+...
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555544442 122 22222222333334444555544444444
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.39 E-value=4.9 Score=43.29 Aligned_cols=180 Identities=15% Similarity=0.142 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004470 430 DEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVN 509 (751)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~ 509 (751)
+..+|..-+..-.+.|+.+.+.-+|++..-- +..=...|-..+......|+.+-|..++....+--++-.+.+ ..+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i-~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII-HLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH-HHHHH
Confidence 3456777777777788888888877776531 111223344444444445777777766666555433322222 22222
Q ss_pred H-HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 004470 510 G-LCKAGNILQAVKLMEDMEVAGFHPDTF-TYTTIMDAYCKSGEMVKAH---ELLRDMLDKGLQPSVVTFNVLMNGFC-- 582 (751)
Q Consensus 510 ~-~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~li~~~~-- 582 (751)
. .-..|+++.|..+++.+...- |+.+ .-..-+....+.|+.+.+. +++....+. .-+......+.--+.
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARL 449 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHH
Confidence 2 233567777777777776652 4322 2222333445566666665 222222221 112122222221111
Q ss_pred ---hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 004470 583 ---MSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQH 616 (751)
Q Consensus 583 ---~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~ 616 (751)
-.++.+.|..++.++.+. .+++...|..+++..
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFE 485 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 235566666666666554 333444555555443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.30 E-value=2.5 Score=41.33 Aligned_cols=152 Identities=13% Similarity=0.040 Sum_probs=83.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 581 FCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEA 660 (751)
Q Consensus 581 ~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 660 (751)
....|+..+|..+|+........ +...-..++.+|...|+.+.|..++..+-...-.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34556666666666666654222 23444455666666666666666666544321111111222233444444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004470 661 WFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL-VADREIYYFFVDINFEEGNTEITLELCD 735 (751)
Q Consensus 661 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 735 (751)
..+-.+.-. ++. |...-..+...+...|+.++|.+.+-.+++++. ..|......++..+.--|..+.+..-+.
T Consensus 223 ~~l~~~~aa-dPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 223 QDLQRRLAA-DPD-DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHh-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 444333332 232 666667777778888888888887777766422 3355666677777776665555444333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.15 E-value=2.3 Score=41.56 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=29.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc
Q 004470 192 FQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL 250 (751)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~ 250 (751)
+......|++.+|...|..+... .|........+..++...|+.+.|..++..+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 33445566666666666666654 3433333334444444455555555555555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.99 Score=40.07 Aligned_cols=138 Identities=10% Similarity=0.067 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHH-
Q 004470 571 VVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAAT-YNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNT-YNIL- 647 (751)
Q Consensus 571 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l- 647 (751)
...|...++ +.+.+..++|+.-|..+.+.|...-... -..........|+...|...|+++-.....|-..- ...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444443 3566777888888888877654421111 11222335677778888888877766433343221 1111
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004470 648 -LQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVA 709 (751)
Q Consensus 648 -i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 709 (751)
...+...|.+++.....+.+-..+-+.-...-..|.-+-.+.|++.+|.+.|+.+.+....|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22345677777776666665544333233445566666677788888887777776643333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.78 E-value=2.5 Score=37.12 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 004470 260 NIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKT 339 (751)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 339 (751)
..++..+.+.+.......+++.+...+. .+...++.++..|++.+ .++.++.+.. ..+.+....+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4566667777778888888887776653 56667778888887653 3334444442 12445555667777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004470 340 SKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKM-GNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFC 407 (751)
Q Consensus 340 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 407 (751)
+.++++.-++.++.. +...+..+.+. ++++.|.+.+.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777777777665422 12222333333 6677777766542 14455666655443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.78 E-value=3.4 Score=38.27 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 712 EIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
++|..++.-+...|+.++|..+|+-++
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 455556666666666666666665544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.57 E-value=9.2 Score=42.29 Aligned_cols=344 Identities=15% Similarity=0.078 Sum_probs=180.6
Q ss_pred CCCCCcccHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCC
Q 004470 321 GLKPNPYTYN-----SVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGN--VAAAYRLFDEMRGLNII 393 (751)
Q Consensus 321 g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 393 (751)
|++.+..-|. .+|+-+...+.+..|+++-.-+...-.. ...+|.....-+.+..+ -+++.+..++=.+...
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~- 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL- 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-
Confidence 5555544444 3566677788888888887766543212 15566666666666532 2223333332222212
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH
Q 004470 394 PDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEP----DEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTY 469 (751)
Q Consensus 394 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 469 (751)
-...+|..+..-....|+.+-|..+++.=...+... +..-+...+.-..+.|+.+-...++-.+... .+...+
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence 245667777777778888888887765322111000 0011122233333444444444433333321 011111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-H-HHCC-CCCCHHHHHHHHHHH
Q 004470 470 TALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMED-M-EVAG-FHPDTFTYTTIMDAY 546 (751)
Q Consensus 470 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~-~~~~-~~~~~~~~~~li~~~ 546 (751)
. .-..+...|..+|.+..++. |..+ +..+..+++-.++...+.. - .+.. +.+-..........+
T Consensus 582 ~------~~l~~~p~a~~lY~~~~r~~---~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~ 648 (829)
T KOG2280|consen 582 F------MTLRNQPLALSLYRQFMRHQ---DRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAF 648 (829)
T ss_pred H------HHHHhchhhhHHHHHHHHhh---chhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHH
Confidence 1 11123344555555554431 1111 1112223322222222211 0 0000 111222233334444
Q ss_pred HHcCCH----------HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004470 547 CKSGEM----------VKAHELLRDMLD-KGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQ 615 (751)
Q Consensus 547 ~~~g~~----------~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~ 615 (751)
.+.... .+-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~a 724 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTA 724 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHH
Confidence 443331 111222223321 1222233344555566677899999998887764 5788899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEA 695 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 695 (751)
++..+++++-+++-+.+. .+.-|.-.+..|.+.|+.+||.+++.+.-. .. ..+.+|.+.|++.+|
T Consensus 725 La~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEA 789 (829)
T ss_pred HHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHH
Confidence 999999998877766543 245567788899999999999998876421 11 567889999999999
Q ss_pred HHHHHH
Q 004470 696 RELFEE 701 (751)
Q Consensus 696 ~~~~~~ 701 (751)
.+..-+
T Consensus 790 ad~A~~ 795 (829)
T KOG2280|consen 790 ADLAAE 795 (829)
T ss_pred HHHHHH
Confidence 886544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.13 Score=34.55 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 678 SYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFF 717 (751)
Q Consensus 678 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 717 (751)
++..+...|...|++++|+++|+++++.. |.|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 44555556666666666666666665542 3344444433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.65 Score=39.77 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=61.3
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIK 684 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 684 (751)
|..++..++.++++.|+++....+.+..- |+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566777777777777777776665443 22222110 0000 0112345678888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 004470 685 GFLKRKKYLEARELFEEMRR-GGLVADREIYYFFVDI 720 (751)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~ 720 (751)
+|+..|++..|.++++...+ .+++-+..+|..|..-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888766 5677677788777743
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.45 E-value=3.6 Score=41.20 Aligned_cols=228 Identities=11% Similarity=0.029 Sum_probs=116.7
Q ss_pred HHHcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHHH
Q 004470 441 YCKAGGMKKAFSLHNNMVHMR--LTPNVVTYTALADGLCKSGELETANELLHEMCRK--GLQLNI---YTYNSIVNGLCK 513 (751)
Q Consensus 441 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~~~~---~~~~~li~~~~~ 513 (751)
+....+.++|+..+.+.+..- ..-...++..+..+.++.|.+++++..--.-++- ...-.. ..|..+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888988888776541 1112346777778888888888776543222111 011111 122333333333
Q ss_pred cCCHHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---C--CCHHHHHHHHHHHHhc
Q 004470 514 AGNILQAVKLMEDMEV-AGFHP---DTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGL---Q--PSVVTFNVLMNGFCMS 584 (751)
Q Consensus 514 ~g~~~~A~~~~~~~~~-~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~--p~~~~~~~li~~~~~~ 584 (751)
.-++.+++.+-.--.. .|..| .-....++..+....+.++++++.|+...+.-- . .....+-.|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 3344444443332221 11111 112233355566666777778777777653210 1 1224566777777777
Q ss_pred CChhHHHHHHHHHHHc----CCCCCHhhHHH-----HHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHH
Q 004470 585 GMIEDGEKLLKWMLEK----GLKPNAATYNP-----LIKQHCLRNDMRTTAKIYKGMCA----QGITP-DGNTYNILLQG 650 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~----g~~p~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~~~~~li~~ 650 (751)
.++++|.-+..+..+. ++..-..-|.. +.-++-..|++..|.+.-++..+ .|-.+ -......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7777777766655432 22211112222 22335556666666666555443 33222 12234455666
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 004470 651 HCKARNMKEAWFLHKEMV 668 (751)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~ 668 (751)
|...|+.+.|+.-|+++.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 667777777776666554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.44 E-value=6 Score=39.60 Aligned_cols=164 Identities=12% Similarity=0.085 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 572 VTFNVLMNGFCMSGMIE---DGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILL 648 (751)
Q Consensus 572 ~~~~~li~~~~~~g~~~---~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 648 (751)
.++..++.+|...+..+ +|..+++.+...... ...++..-+..+.+.++.+++.+.+.+|+..- .-....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 35667777777766544 455566666544221 24444455556656788888888888888752 21222333333
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCC------HHHHHHHHHHHHH-CCCCCCHHH
Q 004470 649 QGH---CKARNMKEAWFLHKEMVQKGFNLTTSSYN-----ALIKGFLKRKK------YLEARELFEEMRR-GGLVADREI 713 (751)
Q Consensus 649 ~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~------~~~A~~~~~~~~~-~~~~~~~~~ 713 (751)
..+ .. .....|...++.++...+.|....|. ..+......++ .+...++++...+ .+.+.+..+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 333 33 33456667776666554554443111 11111222222 4444455553333 222333333
Q ss_pred HH---HH----HHHHHhcCChhHHHHHHHHHH
Q 004470 714 YY---FF----VDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 714 ~~---~l----~~~~~~~g~~~~A~~~~~~~~ 738 (751)
-. .+ +...++.+++++|.++|+-++
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 22 346788999999999998665
|
It is also involved in sporulation []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.7 Score=39.58 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 004470 362 VIYTTLIDGFCKMGNVAAAYRLFDEMRG---------------LNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGR- 425 (751)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 425 (751)
.++..+|.++++.|+++....+++..-. ....|+..+..+++.+|+.+|++..|+++++...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 3444555555555555555555443321 123345555555555555555555555555554443
Q ss_pred CCCCCHHHHHHHHHHH
Q 004470 426 GLEPDEIVYTALIDGY 441 (751)
Q Consensus 426 ~~~p~~~~~~~li~~~ 441 (751)
+++.+..+|..|+.-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3333444555544433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.7 Score=37.69 Aligned_cols=78 Identities=13% Similarity=0.035 Sum_probs=52.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 004470 263 IHCLCRFGKIKEAHLLLLQMELRGC--SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTS 340 (751)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 340 (751)
.....+.|++++|.+.|+.+..+-. .-...+.-.++.+|.+.|++++|...+++.++....-....|...+.+++...
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3345678888888888888876521 11234555677888888888888888888887754434455666666665433
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.38 E-value=8 Score=43.04 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=26.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH
Q 004470 446 GMKKAFSLHNNMVHMRLTPNVVTYTALADG-----LCKSGELETANELLHEMCR 494 (751)
Q Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~l~~~m~~ 494 (751)
+...|..+++...+.| +......+... +....+.+.|+..++.+.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 3566777777777665 33333333322 3345667777777777765
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.37 E-value=12 Score=42.57 Aligned_cols=143 Identities=14% Similarity=0.074 Sum_probs=84.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCC-----CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 004470 136 VQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWG-----SDPHVFDIFFQVLVEARKLNEARKLFEK 210 (751)
Q Consensus 136 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 210 (751)
++...++|+++.|..++++.-.. -.+ ..-+..+.......| ++|..-..-+.....+.++++|..+..+
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~-L~~-----~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~ 440 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQ-LFN-----GSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIAR 440 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhh-hhc-----ccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHH
Confidence 34455689999999998886110 000 000111111122223 3455555566677788999999999998
Q ss_pred HHhCCCccCHH-------hHHHHHHHHHhCCCCHHHHHHHHHhchhc----CCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 211 LLNYGLVISVD-------SCNLFLSRLSNTCDGLRMVVKSFTEFPEL----GICWNTASYNIMIHCLCRFGKIKEAHLLL 279 (751)
Q Consensus 211 ~~~~g~~p~~~-------~~~~ll~~l~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 279 (751)
+...=..|+.. .++.+-+.+....|+++.|.++-+...+. -+.+....+..+..+..-.|++++|..+.
T Consensus 441 l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~ 520 (894)
T COG2909 441 LEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALM 520 (894)
T ss_pred HHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHH
Confidence 86542233322 33444444444567888777776665443 33345667777777888888888888777
Q ss_pred HHHHh
Q 004470 280 LQMEL 284 (751)
Q Consensus 280 ~~m~~ 284 (751)
.+..+
T Consensus 521 ~~a~~ 525 (894)
T COG2909 521 QQAEQ 525 (894)
T ss_pred HHHHH
Confidence 66544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.20 E-value=5.2 Score=37.91 Aligned_cols=205 Identities=13% Similarity=0.073 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 468 TYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYC 547 (751)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 547 (751)
.|..-..+|-..+++++|...+.+..+- ...|...|. ....++.|.-+.+++.+. +.-+..|......|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4555556666666777776666655432 121222221 123345555555555542 222344555555666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CCHhhHHHHHHHHHHcCCH
Q 004470 548 KSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLK-----PNAATYNPLIKQHCLRNDM 622 (751)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~-----p~~~~~~~l~~~~~~~g~~ 622 (751)
..|.++.|-..+++.-+. ...-++++|++++++....-.. .-...+......+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666665555544321 1223444555555444321000 0011223333445555555
Q ss_pred HHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 004470 623 RTTAKIYKGMCA----QGITPDG-NTYNILLQGHCKARNMKEAWFLHKEMVQKG---FNLTTSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 623 ~~A~~~~~~m~~----~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~ 694 (751)
++|...+.+-.. ..--++. ..|-..|-.|....++..|.+.++.--+.+ -+-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 555544433221 0001111 123333444444556666666665533321 111334555555554 3455555
Q ss_pred HHHHH
Q 004470 695 ARELF 699 (751)
Q Consensus 695 A~~~~ 699 (751)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 44433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.08 E-value=2 Score=45.90 Aligned_cols=130 Identities=16% Similarity=0.118 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (751)
...++.-+.+.|.++.|+++-.. |+.. +. +..++|+++.|.+.-.+.. +...|..|.....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D-------~~~r-Fe-----LAl~lg~L~~A~~~a~~~~------~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD-------PDHR-FE-----LALQLGNLDIALEIAKELD------DPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS--------HHHH-HH-----HHHHCT-HHHHHHHCCCCS------THHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC-------hHHH-hH-----HHHhcCCHHHHHHHHHhcC------cHHHHHHHHHHHH
Confidence 46677778899999999987553 2211 11 1126799998887754443 6678999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 004470 268 RFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAET 347 (751)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 347 (751)
++|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+.....|- ++....++...|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 99999999999977654 56777778888998888888877776652 5666666667788877776
Q ss_pred HHHH
Q 004470 348 ILRE 351 (751)
Q Consensus 348 ~~~~ 351 (751)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.77 E-value=8.1 Score=38.66 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004470 538 TYTTIMDAYCKSGEM---VKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIK 614 (751)
Q Consensus 538 ~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~ 614 (751)
++..++.+|...+.. ++|.++++.+... .+..+..+-.-+..+.+.++.+++.+.+.+|+..- .-....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 445555666555543 3444555555433 22234444444555555667777777777776642 112223333333
Q ss_pred HH--HHcCCHHHHHHHHHHHHHCCCCCCHH-HH-HHHHH---HHHhcCC------HHHHHHHHHHHHH-CCCCCCHHHHH
Q 004470 615 QH--CLRNDMRTTAKIYKGMCAQGITPDGN-TY-NILLQ---GHCKARN------MKEAWFLHKEMVQ-KGFNLTTSSYN 680 (751)
Q Consensus 615 ~~--~~~g~~~~A~~~~~~m~~~g~~p~~~-~~-~~li~---~~~~~g~------~~~A~~~~~~~~~-~~~~p~~~~~~ 680 (751)
.+ ........|...+..++..-+.|... .. ..++. .....++ .+....+++...+ .+.+.+..+-.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 32 12223345555555555433344332 11 11111 1111111 3344444443322 12223333322
Q ss_pred ---HH----HHHHHhcCCHHHHHHHHHHHHH
Q 004470 681 ---AL----IKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 681 ---~l----~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
++ +..+.+.++|++|.++|+-.+.
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 22 3445678999999999986653
|
It is also involved in sporulation []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.66 E-value=1.5 Score=43.26 Aligned_cols=117 Identities=14% Similarity=0.009 Sum_probs=58.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH----HHHHHHHHhcCCH
Q 004470 267 CRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTY----NSVVRLLCKTSKV 342 (751)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~ 342 (751)
.-+|+..+|-..++++.+. .+.|..+++-.=.+|...|+.+.-...++++... -.+|...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3456666666666665543 3345555555555566666666555555555433 11222211 2222333345555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 343 VEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDE 386 (751)
Q Consensus 343 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 386 (751)
++|++.-++..+.+ +.|..+-.++.+.+--.|++.++.+...+
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55555555555443 33445555555555555555555554443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.56 E-value=13 Score=40.24 Aligned_cols=378 Identities=12% Similarity=0.069 Sum_probs=213.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc-CCC-cCHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL-GIC-WNTASYNIMI 263 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~li 263 (751)
.-|--.+.-=.+.|..+.+.++|++.+.. +.-+...+...+..+....|+.+..+..|+.+... |.. -+...|...|
T Consensus 80 gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyi 158 (577)
T KOG1258|consen 80 GYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYI 158 (577)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHH
Confidence 34455566667889999999999999864 44555666666766666678888999999988654 211 2455788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---c------CCHHHHHHHHHHHHHC---C-CCCCcccHH
Q 004470 264 HCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCY---L------GELQRVLKLIEEMQIK---G-LKPNPYTYN 330 (751)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~------g~~~~A~~~~~~m~~~---g-~~p~~~~~~ 330 (751)
..--.++++.....+|++.++. | ...|+....-|.+ . -..+++.++-...... + ..+......
T Consensus 159 e~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~ 234 (577)
T KOG1258|consen 159 EFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELE 234 (577)
T ss_pred HHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHH
Confidence 8888899999999999999874 2 3445544444332 1 2233333333322211 0 000011111
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CC----CCHHHHHHH
Q 004470 331 SVVRLLCK-TSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLN---II----PDLLTYTAI 402 (751)
Q Consensus 331 ~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~----p~~~~~~~l 402 (751)
.-+..-.. .+..+++...+.+.... --..+-..-...+..-.|++-..+- +. ++..+|...
T Consensus 235 ~~v~~~~~~s~~l~~~~~~l~~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~y 303 (577)
T KOG1258|consen 235 IGVKDSTDPSKSLTEEKTILKRIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYY 303 (577)
T ss_pred HHHhhccCccchhhHHHHHHHHHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHH
Confidence 11110000 11112222211111110 0111112222333333444433321 12 346678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 403 ICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGEL 482 (751)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 482 (751)
+.--...|+.+.+.-+|+...-- +..=...|-..+.-....|+.+-|..++....+...+-.+.+.-.-....-..|++
T Consensus 304 Ldf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~ 382 (577)
T KOG1258|consen 304 LDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNF 382 (577)
T ss_pred hhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccH
Confidence 88888899999999999887642 22223344455555556689888888887776654432322222222223346799
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCCHH
Q 004470 483 ETANELLHEMCRKGLQLNIY-TYNSIVNGLCKAGNILQAV---KLMEDMEVAGFHPDTFTYTTIMDA-----YCKSGEMV 553 (751)
Q Consensus 483 ~~A~~l~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~ 553 (751)
+.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. +++...... ..+......+.-- +.-.++.+
T Consensus 383 ~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~ 458 (577)
T KOG1258|consen 383 DDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDAD 458 (577)
T ss_pred HHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHH
Confidence 99999999998873 4432 2223344556778888877 333333322 2222222222221 23357889
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004470 554 KAHELLRDMLDKGLQPSVVTFNVLMNGFCMSG 585 (751)
Q Consensus 554 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 585 (751)
.|..++.++.+. .+++...|..+++.....+
T Consensus 459 ~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 459 LARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 999999999886 5778888888887766554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.54 E-value=2.9 Score=44.73 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH
Q 004470 572 VTFNVLMNGFCMSGMIEDGEKLLK 595 (751)
Q Consensus 572 ~~~~~li~~~~~~g~~~~A~~l~~ 595 (751)
..|..|.+...+.|+++-|++.+.
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444444444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.20 E-value=5.5 Score=34.95 Aligned_cols=41 Identities=10% Similarity=0.125 Sum_probs=19.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004470 542 IMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM 583 (751)
Q Consensus 542 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 583 (751)
++..+...+.......+++.+...+ ..+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3344444444555555555554443 2344445555555544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.08 E-value=3.6 Score=37.64 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=54.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 648 LQGHCKARNMKEAWFLHKEMVQKGFNL--TTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG 725 (751)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (751)
...+...|++++|...++..+.....- ...+-..|.......|.+++|++.++...+.++ .+.....-++.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 344566777777777777665431110 112333456666677777777777776555432 2222334556777777
Q ss_pred ChhHHHHHHHHHHHcC
Q 004470 726 NTEITLELCDAAIECY 741 (751)
Q Consensus 726 ~~~~A~~~~~~~~~~~ 741 (751)
+.++|+.-|+++++..
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 7777777777777765
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.12 Score=32.44 Aligned_cols=32 Identities=13% Similarity=0.292 Sum_probs=17.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 004470 699 FEEMRRGGLVADREIYYFFVDINFEEGNTEITL 731 (751)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 731 (751)
|+++++.. |.+...|+.++..|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444433 445566666666666666666654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.6 Score=45.79 Aligned_cols=92 Identities=11% Similarity=0.160 Sum_probs=67.5
Q ss_pred HHHHhhhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHH
Q 004470 116 DFFDWACLRRE----PILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIF 191 (751)
Q Consensus 116 ~~f~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 191 (751)
.|+.|+..+.. ....++..++..+...++++.+...+++++..+ |-+-..|..|
T Consensus 136 ~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d----------------------p~~E~~~~~l 193 (280)
T COG3629 136 RFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD----------------------PYDEPAYLRL 193 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC----------------------ccchHHHHHH
Confidence 47888866532 234566667777788888888888888887765 5666788899
Q ss_pred HHHHHhcCChhHHHHHHHHHHh-----CCCccCHHhHHHHHHH
Q 004470 192 FQVLVEARKLNEARKLFEKLLN-----YGLVISVDSCNLFLSR 229 (751)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~ll~~ 229 (751)
+.+|.+.|+...|+..|+++.+ .|+.|...........
T Consensus 194 m~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 194 MEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 9999999999999999998865 4666766554444433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.66 Score=44.51 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=52.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc-CCHHHHHH
Q 004470 269 FGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKT-SKVVEAET 347 (751)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~ 347 (751)
.+.++=....+..|.+.|+..|..+|+.|++.+-+-.- .|. |.+-..+..- .+-+-++.
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~----nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ----NVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH----HHHHHHHhhCchhhhHHHH
Confidence 35555566667788888888888888888877643211 111 1111111111 12234667
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 348 ILREMMNQGIVPDNVIYTTLIDGFCKMGN 376 (751)
Q Consensus 348 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 376 (751)
++++|...|+.||..+-..|++++.+.|-
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 77777777777777777777777766654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.69 Score=42.06 Aligned_cols=92 Identities=13% Similarity=0.079 Sum_probs=68.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITPD-----GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFL 687 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 687 (751)
..-+.+.|++++|..-|.++++.- ++. ...|..-..++.+.+.++.|++-..++++.++. .......-+.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence 445678899999999999888752 222 344556667778888999999988888887655 3344445567888
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 004470 688 KRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~ 706 (751)
+..++++|++-|.++++..
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 8889999999999988853
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.67 E-value=14 Score=38.35 Aligned_cols=65 Identities=9% Similarity=-0.003 Sum_probs=44.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP---DGNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
...++..+...+.+.|.++.|...+..+...+... .+...-.-+..+...|+.++|+..+++.++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777777888888888888888877643111 233333446667778888888888887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.15 Score=32.04 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=20.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 664 HKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR 696 (751)
Q Consensus 664 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 696 (751)
|+++++..+. ++..|..++..|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555544 6667777777777777777764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.54 E-value=27 Score=41.13 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=53.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC
Q 004470 579 NGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGN--TYNILLQGHCKARN 656 (751)
Q Consensus 579 ~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~ 656 (751)
+.+...+.+++|.-.|+..=+ ..-.+.+|...|++.+|..+..++.. .-|.. +-..|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHccc
Confidence 333445555655555543321 12334455566666666666655532 11211 12455556666667
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 657 MKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEM 702 (751)
Q Consensus 657 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 702 (751)
.-+|-++..+..+. | ...+..|++...|++|+.+....
T Consensus 1015 h~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 66766666665432 1 12334556666677776665543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=23 Score=40.18 Aligned_cols=95 Identities=8% Similarity=0.029 Sum_probs=52.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHH
Q 004470 473 ADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEV-----AGFHPDTFTYTTIMDAYC 547 (751)
Q Consensus 473 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~li~~~~ 547 (751)
+..+...|....|...+..+... .+......+.....+.|..+.++........ ..+ | ..|...+..+.
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf-p--~~~~~~~~~~a 487 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF-P--LAWNDEFRRYT 487 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC-C--cchHHHHHHHH
Confidence 34455667777777777766654 2344445555555566766666655543221 111 2 13566666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004470 548 KSGEMVKAHELLRDMLDKGLQPSVVT 573 (751)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~~~~p~~~~ 573 (751)
+...++.++-.--...++++.|+..+
T Consensus 488 ~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 488 SGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 66666665543333346667776554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.29 Score=31.13 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 714 YYFFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
|..++..|.+.|++++|++++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777888888888888888888654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.3 Score=48.02 Aligned_cols=89 Identities=10% Similarity=-0.040 Sum_probs=49.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKK 691 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 691 (751)
..-|.++|.+++|++.|...+.. .| |++++..-..+|.+..++..|..-...++..+-. -...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhh
Confidence 44466777777777777766653 34 6666666677777777777666655555543211 11223333333333455
Q ss_pred HHHHHHHHHHHHH
Q 004470 692 YLEARELFEEMRR 704 (751)
Q Consensus 692 ~~~A~~~~~~~~~ 704 (751)
..+|.+-++..++
T Consensus 181 ~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 181 NMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHhHHHHHh
Confidence 5555555555555
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.1 Score=42.99 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=19.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004470 415 AEKLFHEMLGRGLEPDEIVYTALIDGYCKAG 445 (751)
Q Consensus 415 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 445 (751)
+++++++|...|+.||..+-..|++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4556666666666666666666666665544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.01 E-value=15 Score=37.02 Aligned_cols=130 Identities=12% Similarity=0.166 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CChhHHHHHHHHHHHcCC---CCCHhhHHHHHHHHHHcCC----
Q 004470 555 AHELLRDMLDKGLQPSVVTFNVLMNGFCM--S----GMIEDGEKLLKWMLEKGL---KPNAATYNPLIKQHCLRND---- 621 (751)
Q Consensus 555 A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~----g~~~~A~~l~~~~~~~g~---~p~~~~~~~l~~~~~~~g~---- 621 (751)
...+++.|.+.|+.-+..+|-+....... . .....|..+++.|.+... .++...+..++.. ..++
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l 158 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHH
Confidence 34455555555555554443332221111 1 123445666666665421 2233444444333 2222
Q ss_pred HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 622 MRTTAKIYKGMCAQGITPDG--NTYNILLQGHCKARN--MKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 622 ~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
.+.+..+|+.+.+.|+..+. .....++........ ...+.++++.+.+.|+++....|..++-..
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 24455666666666655432 222222222211111 346677777777777777777666554433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.99 E-value=7.6 Score=35.00 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=15.8
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHH
Q 004470 313 LIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVE 344 (751)
Q Consensus 313 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 344 (751)
.+..+.+.|++|+...|..+++.+.+.|++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33344444555555555555555555555443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.96 E-value=4.1 Score=36.15 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=40.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcC
Q 004470 191 FFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELG 251 (751)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~ 251 (751)
++.+=.+.+..+++..++.-+.-. .|.....-.+-+.+.-..|++++|+.+|+++.+.+
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 344445667888888888877765 66666666666666556677777777777766654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.37 Score=30.04 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVIS 219 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 219 (751)
.+|..++.+|...|++++|+..|+++++. .|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL--DPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH--CcC
Confidence 46788999999999999999999999886 454
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.49 E-value=29 Score=39.33 Aligned_cols=192 Identities=14% Similarity=0.046 Sum_probs=95.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCC-CCC-----HHHHHHHHH--HHHhcCChhHHHHHHH--------HHHHcCCCCCHhhHH
Q 004470 547 CKSGEMVKAHELLRDMLDKGL-QPS-----VVTFNVLMN--GFCMSGMIEDGEKLLK--------WMLEKGLKPNAATYN 610 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~-~p~-----~~~~~~li~--~~~~~g~~~~A~~l~~--------~~~~~g~~p~~~~~~ 610 (751)
+-.+++..|...++.+.+..- .|+ ...+..++. .+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 456889899999988875311 111 222222222 3345799999999997 444444444444443
Q ss_pred HH--HHHHH--HcCCHHH--HHHHHHHHHHC-CCCCC--HHH-HHHHHHHHHhcC--CHHHHHHHHHHHHH-----CCC-
Q 004470 611 PL--IKQHC--LRNDMRT--TAKIYKGMCAQ-GITPD--GNT-YNILLQGHCKAR--NMKEAWFLHKEMVQ-----KGF- 672 (751)
Q Consensus 611 ~l--~~~~~--~~g~~~~--A~~~~~~m~~~-g~~p~--~~~-~~~li~~~~~~g--~~~~A~~~~~~~~~-----~~~- 672 (751)
.+ +..+. ...+.++ +.++++.+... .-.|+ ..+ +..++.++.... ...++...+.+..+ .+.
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 22 11122 2222223 66666655441 11222 222 333344433211 12244433333222 111
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHH-----HHHHHHHhcCChhHHHHHHHHHHH
Q 004470 673 NLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL-VA--DREIYY-----FFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 673 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
.--..+++.+...+. .|+..|..+.......... .| ....|. .+.+.+...|+.++|.....+...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 111223444444455 7888887766666544211 22 334443 333457788999999988877643
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.6 Score=28.95 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 713 IYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.+..++..+.+.|++++|++.++++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.27 E-value=29 Score=38.88 Aligned_cols=168 Identities=8% Similarity=0.093 Sum_probs=85.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccC---HHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHh
Q 004470 192 FQVLVEARKLNEARKLFEKLLNYGLVIS---VDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCR 268 (751)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 268 (751)
++-+.+.+++++|++.-+..... .|. .......+..+. ..|++++|-..--.|... +...|-.-+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl-~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLL-FEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHH-hcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 56678889999998877655433 332 223344555554 457777777766666554 55556655555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 004470 269 FGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETI 348 (751)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 348 (751)
.++......+ +.......+...|..++..+.. . ....+++...+. +++ .|..+.-.-.-
T Consensus 436 ~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~---~~~~F~e~i~~W--p~~--Lys~l~iisa~---------- 494 (846)
T KOG2066|consen 436 LDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-S---DVKGFLELIKEW--PGH--LYSVLTIISAT---------- 494 (846)
T ss_pred ccccchhhcc---CCCCCcccCchHHHHHHHHHHH-H---HHHHHHHHHHhC--Chh--hhhhhHHHhhc----------
Confidence 5554333222 2222122345566666666655 2 222223322222 112 22222111100
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004470 349 LREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRG 389 (751)
Q Consensus 349 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 389 (751)
-.+..+. -. +...-..|+..|...++++.|+.++-...+
T Consensus 495 ~~q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 495 EPQIKQN-SE-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred chHHHhh-cc-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 1111111 11 112233388888899999999888877654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.27 E-value=2.5 Score=41.59 Aligned_cols=74 Identities=9% Similarity=0.159 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR-----GGLVADREIYYFFV 718 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~ 718 (751)
+..++..+...|+.+.+.+.+++++...+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 444555555555555555555555555433 555555555555555555555555555443 35555544444333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.43 Score=29.65 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNY 214 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 214 (751)
.++..++.++...|++++|++.|+++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999876
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.49 Score=30.10 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 678 SYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 678 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
+|..|+..|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.17 E-value=31 Score=39.09 Aligned_cols=189 Identities=11% Similarity=0.111 Sum_probs=113.5
Q ss_pred HHHHHHHhhhhCC--CCC--hhHHHHHHHHHH-hcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhh
Q 004470 113 LVLDFFDWACLRR--EPI--LEARCIVVQISV-AAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHV 187 (751)
Q Consensus 113 ~al~~f~~~~~~~--~~~--~~~~~~~~~~l~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (751)
.|+.-++-+.++. ++. ..++..++.+|. ...+++.|+..|++.+....- ..+.+. .-.+
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~------~~~~d~----------k~~~ 102 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER------HRLTDL----------KFRC 102 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc------cchHHH----------HHHH
Confidence 3455555555332 233 345677888888 678999999999988654311 111111 0123
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC----CCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcC---CCcCHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNY----GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELG---ICWNTASYN 260 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 260 (751)
..+|++.+.+.+... |....++.++. +..+-...+..+--.+....++...|.+.++...... ..|-+.++-
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 457788888888877 99999987753 1122223333332223323378999999998875543 233445555
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHHHhcCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 004470 261 IMIHCL--CRFGKIKEAHLLLLQMELRGC---------SPDVVSFSTIINGYC--YLGELQRVLKLIEEMQ 318 (751)
Q Consensus 261 ~li~~~--~~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 318 (751)
.++.+. .+.+..+++.+.++++..... .|-..+|..+++.++ ..|+++.+...+.++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555544 456767788888877643211 345667777777665 4677777766666653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.16 E-value=32 Score=39.23 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=44.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHH-HHhcCChhHHHHHHHHHHHc----CCCCCHhhHHHHHH
Q 004470 547 CKSGEMVKAHELLRDMLDKGLQPSVV-------TFNVLMNG-FCMSGMIEDGEKLLKWMLEK----GLKPNAATYNPLIK 614 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~li~~-~~~~g~~~~A~~l~~~~~~~----g~~p~~~~~~~l~~ 614 (751)
....++++|..++.++...-..|+.. .++.|-.. ....|++++|.++.+..... -..+....+.++..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34556666666666654331121111 22222211 12346666666666665543 12233445555666
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 004470 615 QHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~ 634 (751)
+..-.|++++|..+..+..+
T Consensus 506 a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHhchHHHHHHHHHHHHH
Confidence 66666777776666655544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.00 E-value=4.8 Score=36.86 Aligned_cols=93 Identities=12% Similarity=0.044 Sum_probs=66.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 004470 579 NGFCMSGMIEDGEKLLKWMLEKGLKPN----AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD-GNTYNILLQGHCK 653 (751)
Q Consensus 579 ~~~~~~g~~~~A~~l~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 653 (751)
+-+.+.|++++|..-|...++.-.... ...|..-..++.+.+.++.|++--.+.++.+ |+ ......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 446678999999999998888622111 2445555667788889999998888888754 42 3333344667888
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 004470 654 ARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 654 ~g~~~~A~~~~~~~~~~~~~ 673 (751)
...+++|+.=|+++.+..+.
T Consensus 181 ~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcc
Confidence 88999999999999887544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.78 E-value=2.6 Score=38.71 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD--GNTYNILLQGHCKARNMKEAWFLHKEMV 668 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 668 (751)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|......|++..+.....++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344555555555555555555555555433322 2223444555555555555555554444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.65 E-value=26 Score=37.21 Aligned_cols=95 Identities=8% Similarity=0.036 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMN 579 (751)
Q Consensus 500 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 579 (751)
|....-+++..+....+..-...+..+|...| .+...|..+++.|... ..++-..+++++.+..+ .|++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33444444444444444444555555555443 3444455555555444 33444445555444432 13333333333
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 004470 580 GFCMSGMIEDGEKLLKWMLE 599 (751)
Q Consensus 580 ~~~~~g~~~~A~~l~~~~~~ 599 (751)
-|-+ ++.+.+..+|.++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH
Confidence 3333 444555555554443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.61 E-value=21 Score=36.05 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------
Q 004470 659 EAWFLHKEMVQKGFNLTTSSYNALIKGFLK----RKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG--------- 725 (751)
Q Consensus 659 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------- 725 (751)
.|...+.++-..+ +......+...|.. ..+.++|..+|.+..+.|. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhc
Confidence 5666666666655 34444445544433 2366677777777776653 33333333 444444
Q ss_pred ------ChhHHHHHHHHHHHcCC
Q 004470 726 ------NTEITLELCDAAIECYL 742 (751)
Q Consensus 726 ------~~~~A~~~~~~~~~~~~ 742 (751)
+...|..++..+.+.+.
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCC
Confidence 66667777766666554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.14 E-value=14 Score=33.35 Aligned_cols=130 Identities=11% Similarity=0.113 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 277 LLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQG 356 (751)
Q Consensus 277 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 356 (751)
++++.+.+.++.|+...|..+|+.+.+.|++... ..+...++-+|.......+-.+. +.+..+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 4455556667777777788888888877776543 33444555556555544442222 2334455554455443
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 357 IVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFH 420 (751)
Q Consensus 357 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (751)
=...+..+++.+...|++-+|.++.+..... +......++.+..+.++..-=..+++
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 0113555666777777777777777664332 11222344445545554443333333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.81 E-value=4.2 Score=37.39 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 572 VTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA--ATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 572 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
..+..+.+.|++.|+.++|.+.+.++.+....+.. ..+-.++......+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677788888888888888888887776444433 3456667777777777777777766654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.55 E-value=1.1 Score=27.92 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 713 IYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
.|..++.++...|++++|++.++++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3444555555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.37 E-value=12 Score=33.42 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 004470 131 ARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEK 210 (751)
Q Consensus 131 ~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 210 (751)
+...++..-...++.+++..+|..+.... |..+.+-..-+..+.+.|++.+|..+|+.
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLR----------------------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~ 69 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLR----------------------PEFPELDLFDGWLHIVRGDWDDALRLLRE 69 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhC----------------------CCchHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34444455556678888888887765443 55555556667788999999999999999
Q ss_pred HHhCCCccCHHhHHHHHHHHHhCCCCH
Q 004470 211 LLNYGLVISVDSCNLFLSRLSNTCDGL 237 (751)
Q Consensus 211 ~~~~g~~p~~~~~~~ll~~l~~~~~~~ 237 (751)
+.+. .|....+..++..+....|+.
T Consensus 70 l~~~--~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 70 LEER--APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred Hhcc--CCCChHHHHHHHHHHHHcCCh
Confidence 8776 466666677777776555543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.03 E-value=18 Score=33.20 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=62.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITPDGNT-----YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFL 687 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 687 (751)
...+...+++++|..-++..+.. |.... --.|.+.....|.+|+|+++++...+.+. .......-++++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 34567788888888888877652 22222 23345667788889999988887765543 2334455678888
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 004470 688 KRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~ 706 (751)
..|+-++|+.-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8999999999999988864
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=88.95 E-value=4.4 Score=38.50 Aligned_cols=93 Identities=17% Similarity=0.095 Sum_probs=58.5
Q ss_pred hcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHCCCCC-----CHHHH
Q 004470 653 KARNMKEAWFLHKEMVQ----KGFNLT--TSSYNALIKGFLKRKKY-------LEARELFEEMRRGGLVA-----DREIY 714 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~-----~~~~~ 714 (751)
....+++|++.|.-++- .+.++. ...+..++|.|...|+- ..|.+.|+++.+..-.| +..+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34456666665554432 222333 34666778888877773 44666666666533221 23455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 715 YFFVDINFEEGNTEITLELCDAAIECYLVGK 745 (751)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (751)
..++....+.|+.++|.+++.+++..+-...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 5677888899999999999999988775543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.85 E-value=2.2 Score=38.46 Aligned_cols=61 Identities=10% Similarity=0.020 Sum_probs=36.9
Q ss_pred CCChhhHHHHHHHHHhcCC-----------hhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc
Q 004470 182 GSDPHVFDIFFQVLVEARK-----------LNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL 250 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~ 250 (751)
|....++..|+.+|...+. +++|.+.|+++... .|++..|+.-|.... +|-+++.++.+.
T Consensus 66 P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-------kap~lh~e~~~~ 136 (186)
T PF06552_consen 66 PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-------KAPELHMEIHKQ 136 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH-------THHHHHHHHHHS
T ss_pred CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-------hhHHHHHHHHHH
Confidence 6667778888888876553 55566666666655 677777776665542 355555555444
Q ss_pred C
Q 004470 251 G 251 (751)
Q Consensus 251 ~ 251 (751)
+
T Consensus 137 ~ 137 (186)
T PF06552_consen 137 G 137 (186)
T ss_dssp S
T ss_pred H
Confidence 3
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=88.48 E-value=17 Score=37.86 Aligned_cols=132 Identities=10% Similarity=0.015 Sum_probs=89.9
Q ss_pred ChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhh--h------cC
Q 004470 110 DYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTY--K------DW 181 (751)
Q Consensus 110 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~------~~ 181 (751)
||+.-..+. .+.|-|++++..++.++..+|+.+.|..++++++-.- ...+...|..+.... + ..
T Consensus 25 Dp~~l~~ll----~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~rL~~~~ 96 (360)
T PF04910_consen 25 DPNALINLL----QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNCRLDYRR 96 (360)
T ss_pred CHHHHHHHH----HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCccccCCcc
Confidence 776544443 4578899999999999999999999999999987421 011111111100000 0 01
Q ss_pred CCChhh---HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchh
Q 004470 182 GSDPHV---FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPE 249 (751)
Q Consensus 182 ~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~ 249 (751)
+.|-.. ...-+..+.+.|-+..|+++.+-+...++.-|...+...+.-+..+.++++--+++++....
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 123222 33457788899999999999999999876667777777788887788888888877776544
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.47 E-value=86 Score=40.23 Aligned_cols=317 Identities=10% Similarity=0.089 Sum_probs=168.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004470 401 AIICGFCLTGKMVEAEKLFHEM----LGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGL 476 (751)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 476 (751)
.+..+-.+.+.+.+|+..++.- .+. .-....|-.+...|...+++|....+...-.. .|+ ....|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 3344556678888888888773 211 11223444555588888888888777664211 122 22334456
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHH
Q 004470 477 CKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTI-MDAYCKSGEMVKA 555 (751)
Q Consensus 477 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A 555 (751)
...|++..|...|+.+.+.+.. ...+++-++......|.++..+...+...... .+....++++ ..+--+.+++|..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 7789999999999999887432 46677777777777788888777666655432 3333334333 2333566777766
Q ss_pred HHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChhH--HHHHHHHHHHcCCCC---------CHhhHHHHHHHHHHcCCH
Q 004470 556 HELLRDMLDKGLQPSVVTFNV--LMNGFCMSGMIED--GEKLLKWMLEKGLKP---------NAATYNPLIKQHCLRNDM 622 (751)
Q Consensus 556 ~~~~~~~~~~~~~p~~~~~~~--li~~~~~~g~~~~--A~~l~~~~~~~g~~p---------~~~~~~~l~~~~~~~g~~ 622 (751)
...+. +. +..+|.. ++..+.+..+-+. -.++.+.+.+.-+.| =...|..++..+.-..
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-- 1608 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-- 1608 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH--
Confidence 66554 11 2222222 2222222221111 112222222221111 0122333333321111
Q ss_pred HHHHHHHHHHHHCCCCCCHHH------HHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCC-----CHHHHHHHHHHHHhcC
Q 004470 623 RTTAKIYKGMCAQGITPDGNT------YNILLQGHCKARNMKEAWFLHKE-MVQKGFNL-----TTSSYNALIKGFLKRK 690 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~------~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~g 690 (751)
-....+.. .+..++..+ |..-+..-....+..+-+--+++ +.+....| -..+|...++...+.|
T Consensus 1609 --l~~~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG 1684 (2382)
T KOG0890|consen 1609 --LENSIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG 1684 (2382)
T ss_pred --HHHHHHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc
Confidence 01111111 112222111 11111110011112222211221 22211111 3468889999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 691 KYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 691 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
+++.|...+-.+.+.+ -+..+-..+..+...|+...|+.++++.+++...
T Consensus 1685 ~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1685 HLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred cHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 9999999988888865 3456667888999999999999999999988754
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.37 E-value=0.83 Score=28.01 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 714 YYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
+..++.++.+.|++++|.+.++++++.++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 45566777777888888888888777654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.27 E-value=31 Score=34.80 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHC
Q 004470 274 EAHLLLLQMELRGCSPDVVSFSTIINGYCY--LG----ELQRVLKLIEEMQIK 320 (751)
Q Consensus 274 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~ 320 (751)
+.+.+++.|.+.|+.-+..+|-+....... .. ...+|..+++.|++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 334455566666665555444332221111 11 234455566666554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.20 E-value=39 Score=35.94 Aligned_cols=167 Identities=14% Similarity=0.063 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 463 TPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTI 542 (751)
Q Consensus 463 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 542 (751)
..|.....+++..+...-++.-...+..+|..-| -+-..|..++++|... ..++-..+|+++.+..+ .|++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 3467778889999999888999999999998875 3667888999999888 56788899999988763 455555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHhhHHHHHHHH
Q 004470 543 MDAYCKSGEMVKAHELLRDMLDKGLQP--S---VVTFNVLMNGFCMSGMIEDGEKLLKWMLEK-GLKPNAATYNPLIKQH 616 (751)
Q Consensus 543 i~~~~~~g~~~~A~~~~~~~~~~~~~p--~---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-g~~p~~~~~~~l~~~~ 616 (751)
...|.+ ++.+.+..+|.++...=++. + ...|.-|...- ..+.+....+..++... |...-.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 666655 88889999998887642221 1 12343333211 23455555555555443 3333344445555556
Q ss_pred HHcCCHHHHHHHHHHHHHCC
Q 004470 617 CLRNDMRTTAKIYKGMCAQG 636 (751)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g 636 (751)
....++.+|++++..+++.+
T Consensus 216 s~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 216 SENENWTEAIRILKHILEHD 235 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc
Confidence 66667777777777666643
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.19 E-value=35 Score=35.39 Aligned_cols=68 Identities=6% Similarity=-0.017 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004470 568 QPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKP---NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ 635 (751)
Q Consensus 568 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 635 (751)
.....+|..++..+.+.|.++.|...+..+...+... +......-+..+-..|+..+|...+++.++.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455678889999999999999999999988754221 3344445566677899999999999988873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.81 E-value=41 Score=35.74 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=66.5
Q ss_pred CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHc-CCCCCHhh
Q 004470 533 HPDTFTY-TTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM--SGMIEDGEKLLKWMLEK-GLKPNAAT 608 (751)
Q Consensus 533 ~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~l~~~~~~~-g~~p~~~~ 608 (751)
.|+..++ +.+++.+-+.|-..+|...+..+... .+|+...|..+|+.-.. .-+...+..+++.|... | .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4554443 45667777778888888888888776 46677777777764322 12367777788877754 4 46666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 609 YNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 609 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
|...+.--...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 76666665677888777777776665
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.80 E-value=5.4 Score=42.83 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 257 ASYNIMIHCLCRFGKIKEAHLLLLQM 282 (751)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m 282 (751)
.-|..|.++..+.|++..|.+.|...
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34555555555555555555554443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.36 E-value=19 Score=40.59 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004470 329 YNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKM 374 (751)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 374 (751)
.=.+|-.|.+.|.+++|.++..+..+. .......+...+..|...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 334566777888888888888554443 333445566666666654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.28 E-value=1.3 Score=29.66 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=24.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004470 190 IFFQVLVEARKLNEARKLFEKLLNYGL 216 (751)
Q Consensus 190 ~l~~~~~~~g~~~~A~~~~~~~~~~g~ 216 (751)
-|+++|...|+.+.|.+++++++..|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 489999999999999999999997653
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.27 E-value=1.7 Score=28.31 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 712 EIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.+++.++..|...|++++|.++++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 456677777888888888888888777644
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.99 E-value=64 Score=36.10 Aligned_cols=121 Identities=10% Similarity=-0.010 Sum_probs=72.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 615 QHCLRNDMRTTAKIYKGMCAQGITPDGN--TYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKY 692 (751)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 692 (751)
++..-|+-++|..+.++|.... .|-.. -.-.+..+|+-.|+.....+++.-+++. ...|..-+..+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3556677778888888887642 22111 1234556677777777777776666553 344555555555566666778
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCChhHHHHHHHHHHH
Q 004470 693 LEARELFEEMRRGGLVADREIYYFFV--DINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 739 (751)
+....+.+-+.+. ..|....-..++ -++...| ..+|+.+++.+..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 8877777766663 344333222222 2333334 5889999988875
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.88 E-value=0.96 Score=27.72 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNYGLVIS 219 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 219 (751)
++..++.++.+.|++++|.+.|+++++. .|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~--~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR--YPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH--CcC
Confidence 3456888899999999999999999876 454
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.63 E-value=41 Score=33.61 Aligned_cols=14 Identities=0% Similarity=0.055 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHcCC
Q 004470 363 IYTTLIDGFCKMGN 376 (751)
Q Consensus 363 ~~~~li~~~~~~g~ 376 (751)
+-...+.++.+.|+
T Consensus 144 VR~~a~~aLg~~~~ 157 (280)
T PRK09687 144 VRFAVAFALSVIND 157 (280)
T ss_pred HHHHHHHHHhccCC
Confidence 33334444444443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.56 E-value=2.2 Score=26.39 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 712 EIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.+|..++..+.+.|++++|.+.++++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 356777888888888888888888887653
|
... |
| >KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.30 E-value=44 Score=33.61 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=28.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHH-HHHHHHHHHHh-cCCHHHH
Q 004470 262 MIHCLCRFGKIKEAHLLLLQMEL-----RGCSPDVV-SFSTIINGYCY-LGELQRV 310 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~-~~~~li~~~~~-~g~~~~A 310 (751)
.++.+...|+..++.+.+++..+ .|++|++. .|+.+-.-|.+ .|++...
T Consensus 121 ~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 121 IARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHH
Confidence 44455567777777777777665 56666554 34555444443 4555544
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.21 E-value=1.6 Score=27.06 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNY 214 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 214 (751)
+|..++.+|...|++++|.+.|++.++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5778899999999999999999998875
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.80 E-value=2.3 Score=27.71 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 676 TSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 676 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
..+++.|+..|...|++++|..+++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35778888888888999999988888775
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.68 E-value=77 Score=35.90 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=37.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh---
Q 004470 403 ICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRL-TPNVVTYTALADGLCK--- 478 (751)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~--- 478 (751)
...+.-.|+++.|++.+-+ ..+...+.+.+...+..|.-.+-.+... ..+..... .|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455667888888887766 2233445555555444432211111111 22221110 1112456677777765
Q ss_pred cCCHHHHHHHHHHHHHc
Q 004470 479 SGELETANELLHEMCRK 495 (751)
Q Consensus 479 ~g~~~~A~~l~~~m~~~ 495 (751)
..+..+|.+.+--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 34677777777666544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=84.44 E-value=56 Score=34.08 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=69.1
Q ss_pred CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC------CCCC
Q 004470 640 DGNTYNIL---LQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFL-KRKKYLEARELFEEMRRG------GLVA 709 (751)
Q Consensus 640 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~------~~~~ 709 (751)
|...|.++ +..+.+.|-+..|.++.+-+.+.++.-|+.....+|+.|. +.++++--+++.+..... ..-|
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 44444443 4567788999999999999999887767877777777775 678888888888876542 1133
Q ss_pred CHHHHHHHHHHHHhcCCh---------------hHHHHHHHHHHHcC
Q 004470 710 DREIYYFFVDINFEEGNT---------------EITLELCDAAIECY 741 (751)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~~~~~~ 741 (751)
+-. ...+-++...++. ++|.+.+.+++...
T Consensus 179 n~a--~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 179 NFA--FSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred cHH--HHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 322 2344456666666 88998888887553
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.42 E-value=11 Score=37.10 Aligned_cols=101 Identities=12% Similarity=0.111 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhH
Q 004470 533 HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKG---LQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATY 609 (751)
Q Consensus 533 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~ 609 (751)
+....+...++..-....+++.++..+-++...- ..|+... ...++. +-.-+.++++.++..=+.-|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcchhccccchhhH
Confidence 3344444555544445566777776666654320 0111111 111222 2234556777777666666777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004470 610 NPLIKQHCLRNDMRTTAKIYKGMCAQ 635 (751)
Q Consensus 610 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 635 (751)
+.+++.+.+.+++.+|..+.-.|+.+
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777766666553
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.40 E-value=9.1 Score=35.45 Aligned_cols=41 Identities=15% Similarity=-0.040 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHH
Q 004470 690 KKYLEARELFEEMRRG---GLVADREIYYFFVDINFEEGNTEIT 730 (751)
Q Consensus 690 g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 730 (751)
.+.++|+.++.++++. +-.+|++.+..|+..+.+.|+++.|
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444431 1133444444444444444444444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.14 E-value=14 Score=34.25 Aligned_cols=78 Identities=13% Similarity=0.029 Sum_probs=62.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 619 RNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK---GFNLTTSSYNALIKGFLKRKKYLEA 695 (751)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A 695 (751)
+-.-+.|.+.|-.+...+..-++.....|...|. ..+.++|+.++.++++. +-.+|+..+..|+..+.+.|+++.|
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3345788888888888776667777767666665 67899999999999874 3467899999999999999999988
Q ss_pred HH
Q 004470 696 RE 697 (751)
Q Consensus 696 ~~ 697 (751)
.-
T Consensus 198 Yi 199 (203)
T PF11207_consen 198 YI 199 (203)
T ss_pred hh
Confidence 53
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.13 E-value=63 Score=34.44 Aligned_cols=241 Identities=12% Similarity=0.109 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHCC-CC-CCHHHHHHHHHHHHHcCCHHH-
Q 004470 484 TANELLHEMCRKGLQLNIYTYNSIVNGLCKAG------NILQAVKLMEDMEVAG-FH-PDTFTYTTIMDAYCKSGEMVK- 554 (751)
Q Consensus 484 ~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~~-~~-~~~~~~~~li~~~~~~g~~~~- 554 (751)
....++++..+. -|+...|+..|..|...- .+.....+++...+.+ .. ....-|..+.-.++......+
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 334566665543 345556666666554322 3444555565554432 22 234556666666665554333
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHH-HHHHHHHHHcCCCCCHhhHHHHHHHHHHcCC-HHHHH--HHH
Q 004470 555 AHELLRDMLDKGLQPSVVTFNVLMNGFCMSG-MIEDG-EKLLKWMLEKGLKPNAATYNPLIKQHCLRND-MRTTA--KIY 629 (751)
Q Consensus 555 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A-~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~-~~~A~--~~~ 629 (751)
|..+..+. +..+...|-.-+....+.. +.+-- .++++.....-..+-...|+... .|+ ..... .++
T Consensus 378 a~~l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 378 AVKLTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLII 448 (568)
T ss_pred HHHhhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHH
Confidence 33333232 3445555555444444221 22111 12222232221222223333322 222 22211 122
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH-C
Q 004470 630 KGMCAQGITPDGNT-YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK--RKKYLEARELFEEMRR-G 705 (751)
Q Consensus 630 ~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~-~ 705 (751)
...... ..|+..+ -+.+++.+.+.|-.++|.+.+..+... ++|+...|..++..-.. +-+...+.++|+.|.. .
T Consensus 449 ~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 449 SALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF 526 (568)
T ss_pred HHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh
Confidence 222332 2455555 356778888899999999999999886 56688888888765432 2348889999999986 5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 706 GLVADREIYYFFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 706 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
| .|+..|.-....=...|..+.+-.++.++..
T Consensus 527 g--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 527 G--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred C--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 6 6777777666555678988888888887764
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.09 E-value=1.4 Score=25.50 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFE 209 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~ 209 (751)
.+...|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345678888999999999988775
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.08 E-value=50 Score=33.24 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------
Q 004470 623 RTTAKIYKGMCAQGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK-------- 690 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------- 690 (751)
..|...+.++...+ +......+...|.. ..+.++|...|.+.-+.|. ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhh
Confidence 45666777766655 33333444444432 2367777777777777663 33333333 444444
Q ss_pred -------CHHHHHHHHHHHHHCCCCC
Q 004470 691 -------KYLEARELFEEMRRGGLVA 709 (751)
Q Consensus 691 -------~~~~A~~~~~~~~~~~~~~ 709 (751)
+...|...+......+...
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChh
Confidence 5566666666666655433
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.97 E-value=43 Score=32.40 Aligned_cols=184 Identities=14% Similarity=0.089 Sum_probs=106.2
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhc
Q 004470 513 KAGNILQAVKLMEDMEVAGFHPDT---FTYTTIMDAYCKSGEMVKAHELLRDMLDK---GL--QPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--~p~~~~~~~li~~~~~~ 584 (751)
+..++++|+.-|.+..+....... .+...++..+.+.+++++..+.+.+++.- .+ .-+..+.|.+++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345788899988888765322223 34455677888889999888888887631 11 12445667777766655
Q ss_pred CChhHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC------CCCHHHHHHHH
Q 004470 585 GMIEDGEKLLKWMLEK-----GLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ-----GI------TPDGNTYNILL 648 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~-----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~------~p~~~~~~~li 648 (751)
.+.+--...++.-++. +-+.--.|-..|...|...|++.+..++++++... |- ..-...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6655555555443321 11111233455666777777777777777776542 10 01134566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----HhcCCHHHHHH
Q 004470 649 QGHCKARNMKEAWFLHKEMVQK-GFNLTTSSYNALIKGF-----LKRKKYLEARE 697 (751)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~A~~ 697 (751)
..|....+-.+-..+|++.+.. .--|.+.+... ++-| .+.|++++|-.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHh
Confidence 7777777777766777766542 12234444332 2322 34566666544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.83 E-value=29 Score=37.64 Aligned_cols=149 Identities=17% Similarity=0.087 Sum_probs=91.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004470 478 KSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHE 557 (751)
Q Consensus 478 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 557 (751)
-.|+++.|..++..+. ....+.++..+.++|-.++|+++- +|..-. .....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHH
Confidence 4566666655443332 223345566667777777776543 232221 122346788888877
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004470 558 LLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGI 637 (751)
Q Consensus 558 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 637 (751)
+..+.. +..-|..|.++....|++..|.+.|..... |..|+-.+...|+.+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 665543 556688888888888888888888876553 44666666777777766666666666553
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 638 TPDGNTYNILLQGHCKARNMKEAWFLHKE 666 (751)
Q Consensus 638 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 666 (751)
. |....+|...|+++++.+++.+
T Consensus 724 ~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 N------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred c------chHHHHHHHcCCHHHHHHHHHh
Confidence 2 2334456677888888777654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.76 E-value=11 Score=37.14 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=79.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH----------cCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHH
Q 004470 577 LMNGFCMSGMIEDGEKLLKWMLE----------KGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG---ITPDGNT 643 (751)
Q Consensus 577 li~~~~~~g~~~~A~~l~~~~~~----------~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~ 643 (751)
|..+|.....|+.-....-.+-. .|......+...++..-....+++.+...+-++...- ..|+...
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~ 104 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI 104 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH
Confidence 45556665566554433323222 2333344455555555555677888888777776421 1222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
+ ..++.+ -.-+.++++.++..=++.|+-||..+...+++.+.+.+++.+|..+.-.|....
T Consensus 105 ~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 105 H-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred H-HHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2 223322 334677888888888888888888888888888888888888888887777654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.43 E-value=31 Score=30.31 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=26.8
Q ss_pred cCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcC
Q 004470 198 ARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELG 251 (751)
Q Consensus 198 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~ 251 (751)
.++++++..+++.|.-. .|+....-.+-+.+.-..|++++|+.+|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 55555555555555443 44444444444444444555555555555555543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=83.36 E-value=9.6 Score=32.60 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 674 LTTSSYNALIKGFLKRKK---YLEARELFEEMRRGGLVA-DREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 674 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
++..+--.+.+++.+..+ ..+.+.+++...+...+. ..+..+.|+-++++.|++++++++++..++..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 344455555555555432 334455555555422111 22333344455556666666666665555544
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.03 E-value=47 Score=32.15 Aligned_cols=203 Identities=17% Similarity=0.120 Sum_probs=118.1
Q ss_pred CccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC--
Q 004470 216 LVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTA---SYNIMIHCLCRFGKIKEAHLLLLQMELR---GC-- 287 (751)
Q Consensus 216 ~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~-- 287 (751)
-.||+..-|..-.+-.....+.++|+..|+++.+.....-.+ +.-.+|..+.+.|++++-.+.|.+|... .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 356655444443333334467788888888877664433333 3344677888999999998888887531 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----C
Q 004470 288 SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIK--GLKPN---PYTYNSVVRLLCKTSKVVEAETILREMMNQGI----V 358 (751)
Q Consensus 288 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~ 358 (751)
.-+..+-|++++.-....+.+-..++++.-... .-+.+ -.|-..|...|...|++.+-.++++++...-- .
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 123455677777666666666555555443221 00111 22345677778888888888888888765311 1
Q ss_pred C-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH-----HHHhcCCHHHHHHHH
Q 004470 359 P-------DNVIYTTLIDGFCKMGNVAAAYRLFDEMRGL-NIIPDLLTYTAIIC-----GFCLTGKMVEAEKLF 419 (751)
Q Consensus 359 p-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~-----~~~~~g~~~~A~~~~ 419 (751)
. =...|..=|..|....+-.+-..+|++.... ...|.+... .+|+ ...+.|++++|-.-|
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHH
Confidence 1 1346667777788887777777777766542 122333332 2232 234567777775433
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.01 E-value=8.3 Score=35.93 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHH
Q 004470 609 YNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGF--NLTTSSYNALIKG 685 (751)
Q Consensus 609 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~ 685 (751)
.+..+..+.+.+.+.+|+...++-++.. +.|..+-..++..||-.|+|++|..-++-.-+..+ .+....|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455667788899999999999888763 33566667789999999999999988887766432 3345577777655
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.96 E-value=11 Score=39.37 Aligned_cols=127 Identities=11% Similarity=0.111 Sum_probs=79.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCC
Q 004470 543 MDAYCKSGEMVKAHELLRDMLDK-GLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRND 621 (751)
Q Consensus 543 i~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 621 (751)
|.--...|+.-.|-+-+...... --.|+....... .+...|+++.+...+...... +.....+..+++....+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 33444567777766555444432 223444433333 345678888888887766543 33345667777888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 622 MRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 622 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
+++|...-+.|+...++ +........-.-...|-++++.-.|++.....++
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 88888888888776554 4444444333445567788888888888766433
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.88 E-value=60 Score=33.27 Aligned_cols=123 Identities=12% Similarity=0.102 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 004470 623 RTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK---RKKYLEARELF 699 (751)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 699 (751)
+.-+.+++++++.+ +.+......++..+.+..+.++..+.+++++...+. +...|...++.... .-.+++...+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44556666666652 234555566667777777777777777777776443 66677666665543 23466666666
Q ss_pred HHHHHC------CC------CCCH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCCc
Q 004470 700 EEMRRG------GL------VADR-----EIYYFFVDINFEEGNTEITLELCDAAIECYL-VGKAT 747 (751)
Q Consensus 700 ~~~~~~------~~------~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 747 (751)
.+.++. +. .++. .++..+...+.++|..+.|...++-++|..+ .|..+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~ 191 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESL 191 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcccc
Confidence 665541 11 0111 1222333456778888888888888888775 34433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.34 E-value=30 Score=30.36 Aligned_cols=52 Identities=12% Similarity=-0.097 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004470 234 CDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRG 286 (751)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (751)
.++.+++..+++.+.-..|. +...-..-...+.+.|++++|+.+|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46777777777776655433 22222222334677888888888888887754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.23 E-value=94 Score=35.09 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 333 VRLLCKTSKVVEAETILREMMNQGIVP---DNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLT 409 (751)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 409 (751)
|+-+.+.+.+++|..+.+..... .| -......+|+.+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 34455555666665555443322 22 2234555666666666666666666666543 444555555555544
Q ss_pred CCHH
Q 004470 410 GKMV 413 (751)
Q Consensus 410 g~~~ 413 (751)
++..
T Consensus 437 ~~l~ 440 (846)
T KOG2066|consen 437 DQLT 440 (846)
T ss_pred cccc
Confidence 4433
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.21 E-value=92 Score=34.94 Aligned_cols=121 Identities=15% Similarity=0.131 Sum_probs=81.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 580 GFCMSGMIEDGEKLLKWMLEKGLKPNA--ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNM 657 (751)
Q Consensus 580 ~~~~~g~~~~A~~l~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 657 (751)
++..-|+.++|..+.++|.... .|-. .-.-++..+|+..|+.....+++.-.+.. ...|+.-+..+.-++.-..+.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 4456788899999999998652 2211 11235666789999988888888776653 345666676667777777888
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 658 KEAWFLHKEMVQKGFNLTTS--SYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 658 ~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
+....+.+-+.+. ..|... +-..|.-+|.-.| ..+|+.+++.|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 8888888776654 444443 3334444444444 5789999999986
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=82.00 E-value=28 Score=31.68 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004470 658 KEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK----K-------YLEARELFEEMRRGGLVADREIYYFFVDINFEEGN 726 (751)
Q Consensus 658 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (751)
++|+.-|++++..++. ...++..++.+|...+ + +++|...|+++.+ ..|+...|..-+...
T Consensus 52 edAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~----- 123 (186)
T PF06552_consen 52 EDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA----- 123 (186)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH-----
Confidence 3444444444444333 3346666666665432 2 4555555555555 367777777544432
Q ss_pred hhHHHHHHHHHHHcCC
Q 004470 727 TEITLELCDAAIECYL 742 (751)
Q Consensus 727 ~~~A~~~~~~~~~~~~ 742 (751)
++|-++..++.+++.
T Consensus 124 -~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 -AKAPELHMEIHKQGL 138 (186)
T ss_dssp -HTHHHHHHHHHHSSS
T ss_pred -HhhHHHHHHHHHHHh
Confidence 456666666666653
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.67 E-value=1.2e+02 Score=35.36 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=26.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004470 545 AYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM 583 (751)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 583 (751)
.|.+....+-+..+++.+....-.++..-.+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 355666777778888877765545566667777776654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.50 E-value=24 Score=33.51 Aligned_cols=84 Identities=8% Similarity=0.010 Sum_probs=58.0
Q ss_pred hcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCH
Q 004470 141 AAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISV 220 (751)
Q Consensus 141 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 220 (751)
..++|+.|...+.+++..+ |..+.-|.-=+-++.+...++.+..--.++++. .|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~n----------------------P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~ 77 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICIN----------------------PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNL 77 (284)
T ss_pred chhhhchHHHHHHHHHhcC----------------------CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHH
Confidence 3566777777777776654 333444555666777777777777777777665 6777
Q ss_pred HhHHHHHHHHHhCCCCHHHHHHHHHhch
Q 004470 221 DSCNLFLSRLSNTCDGLRMVVKSFTEFP 248 (751)
Q Consensus 221 ~~~~~ll~~l~~~~~~~~~a~~~~~~~~ 248 (751)
.-...+++........+++|+.++.++.
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 7777777776666777888888877773
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.22 E-value=67 Score=32.11 Aligned_cols=232 Identities=13% Similarity=0.064 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHH
Q 004470 289 PDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKV----VEAETILREMMNQGIVPDNVIY 364 (751)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~ 364 (751)
+|.......+..+...|. +++...+..+... +|...-...+.++...|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455555555555655554 2333333333322 2445555555566665542 4566666655333 3455555
Q ss_pred HHHHHHHHHcCC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 365 TTLIDGFCKMGN-----VAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALID 439 (751)
Q Consensus 365 ~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 439 (751)
...+.++...+. ...+...+..... .++..+-...+.++.+.|+ ++|+..+-.+++. +|..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 555555544332 1223333333222 1344455555566666555 4455555555542 23333333333
Q ss_pred HHHHcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 004470 440 GYCKAG-GMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNIL 518 (751)
Q Consensus 440 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 518 (751)
++.+.+ ....+...+..+.. .++..+-...+.++.+.|+ ..|...+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 333322 12344444444443 2355555555666666665 33444444444332 1 122344555555553
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 519 QAVKLMEDMEVAGFHPDTFTYTTIMDA 545 (751)
Q Consensus 519 ~A~~~~~~~~~~~~~~~~~~~~~li~~ 545 (751)
+|+..+..+... .||..+-...+.+
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 455555555543 2344444433333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 751 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 9e-05 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 95.3 bits (235), Expect = 3e-20
Identities = 43/290 (14%), Positives = 94/290 (32%), Gaps = 8/290 (2%)
Query: 415 AEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALAD 474
A L P E L+ + + +L+ A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 475 GLCKSGELETANELL---HEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAG 531
+ +L A+ LL H +K L + YN+++ G + G + V ++ ++ AG
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 532 FHPDTFTYTTIMDAYCKSGEMVKA-HELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDG 590
PD +Y + + + L M +GL+ + VL++ + +++
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 591 EKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQG 650
K+ P + L++ ++ + K++ + ++ L
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL-KTLQCLFEKQLHMELAS 314
Query: 651 HCKARNMKEAWFLHKEMVQKGF---NLTTSSYNALIKGFLKRKKYLEARE 697
++++ KE+ L AL + + K LE
Sbjct: 315 RVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREV 364
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 85.6 bits (210), Expect = 3e-17
Identities = 21/178 (11%), Positives = 64/178 (35%), Gaps = 4/178 (2%)
Query: 249 ELGICWNTASYNIMIHCLCRFGKIKEAHLLLL---QMELRGCSPDVVSFSTIINGYCYLG 305
+ + C ++ AH LL+ + + ++ ++ G+ G
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179
Query: 306 ELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEA-ETILREMMNQGIVPDNVIY 364
+ ++ ++ ++ GL P+ +Y + ++ + + + E L +M +G+ +
Sbjct: 180 AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT 239
Query: 365 TTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEM 422
L+ + + A +++ +P + + ++ V KL +
Sbjct: 240 AVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.0 bits (198), Expect = 7e-16
Identities = 24/182 (13%), Positives = 57/182 (31%), Gaps = 4/182 (2%)
Query: 315 EEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETIL---REMMNQGIVPDNVIYTTLIDGF 371
+ L + + T ++ A +L + + +Y ++ G+
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 372 CKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEA-EKLFHEMLGRGLEPD 430
+ G + ++ + PDLL+Y A + + E+ +M GL+
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
Query: 431 EIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLH 490
+ L+ +A +K + P V + L + + +L
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL 295
Query: 491 EM 492
+
Sbjct: 296 PL 297
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.4 bits (160), Expect = 2e-11
Identities = 20/150 (13%), Positives = 53/150 (35%), Gaps = 1/150 (0%)
Query: 240 VVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIIN 299
++ + YN ++ R G KE +L ++ G +PD++S++ +
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 300 GYCYLG-ELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIV 358
+ + + +E+M +GLK ++ + + + + +
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 359 PDNVIYTTLIDGFCKMGNVAAAYRLFDEMR 388
P V + L+ + +L ++
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.5 bits (150), Expect = 4e-10
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 3/127 (2%)
Query: 591 EKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQG 650
L + P L+++ + + ++ +
Sbjct: 77 GCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKC 136
Query: 651 HCKARNMKEAWFL---HKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL 707
+ A L H QK LT YNA++ G+ ++ + E + ++ GL
Sbjct: 137 CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196
Query: 708 VADREIY 714
D Y
Sbjct: 197 TPDLLSY 203
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 2e-07
Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 5/148 (3%)
Query: 191 FFQVLVEARKLNEARKLFEKLLNY---GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEF 247
FF+ + +L A L ++++D N + + + +V
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA-FKELVYVLFMV 191
Query: 248 PELGICWNTASYNIMIHCLCRFGKIKEA-HLLLLQMELRGCSPDVVSFSTIINGYCYLGE 306
+ G+ + SY + C+ R + L QM G + + +++
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 307 LQRVLKLIEEMQIKGLKPNPYTYNSVVR 334
L+ V K+ + P P + ++R
Sbjct: 252 LKAVHKVKPTFSLPPQLPPPVNTSKLLR 279
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 6e-11
Identities = 65/488 (13%), Positives = 149/488 (30%), Gaps = 149/488 (30%)
Query: 35 RGYLSQRSFALGSTNTRPFPDYSPKRPTIRDSEIVHQISTAI-KLRCSEPL--------- 84
R Y+ QR L + N + F Y+ R + ++ A+ +LR ++ +
Sbjct: 110 RMYIEQRD-RLYNDN-QVFAKYNVSRL-----QPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 85 RHTL-------KPFESKFRSDHLIWVLMDIRSDYRLVLDFFDWACLRREPILEARC-IVV 136
+ + + K + W+ + + VL+ + +P +R
Sbjct: 163 KTWVALDVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 137 QISVAAKDLKTA-----------HGLI--HDFWAKPNLDASIAFTHFVERLIYTYKDWGS 183
I + ++ + L+ + + AF + L+ T
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN---AFNLSCKILLTT-----R 273
Query: 184 DPHVFDIF-----FQVLVEARKLN----EARKLFEKLLNYG-------------LVISV- 220
V D + ++ + E + L K L+ +S+
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 221 -DSCNLFLSRLSN----TCDGLRMVVKSFTE----------------FPE--------LG 251
+S L+ N CD L +++S FP L
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 252 ICWNTASYN---IMIHCLCRFGKIKE------AHLLLLQMELRGCSPDVVSF-STIINGY 301
+ W + ++++ L ++ +++ + + +EL+ + + +I++ Y
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 302 CYLGELQRVLKLIEEMQIKGLKPNP---YTYNSVVRLLCKTSKVVEAETILREMMNQGIV 358
+ + L P Y Y+ + L K + E T+ R
Sbjct: 454 ----------NIPKTFDSDDLIPPYLDQYFYSHIGHHL-KNIEHPERMTLFRM------- 495
Query: 359 PDNVIYTTLIDGFC--KMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAE 416
++ F K+ + + A+ + LN + L Y IC + +
Sbjct: 496 ----VFLDF--RFLEQKIRHDSTAWNASGSI--LNTLQQLKFYKPYIC---------DND 538
Query: 417 KLFHEMLG 424
+ ++
Sbjct: 539 PKYERLVN 546
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 5e-10
Identities = 94/646 (14%), Positives = 181/646 (28%), Gaps = 204/646 (31%)
Query: 176 YTYKD--------WGSDPHVFDI------------FFQVLVEARKLNEARKLFEKLLNYG 215
Y YKD + + D+ +++ ++ +LF LL+
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 216 ------LVISVDSCNL-FL-SRLSNTCDGLRMVVKSFTEFPELGICWNT----ASYNIMI 263
V V N FL S + M+ + + E + +N A YN+
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE--QRDRLYNDNQVFAKYNV-- 131
Query: 264 HCLCRFGKIKEAHLLLLQME---------LRGC-----SPDVVSFSTIINGYCY------ 303
R + LL++ + G + DV + +
Sbjct: 132 ---SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 304 LGELQRVLKLIEEMQ--IKGLKPNPYTYNSVVRLLCKTS-KVVEAETILREMMNQG---- 356
L ++E +Q + + PN + S ++ + LR ++
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 357 --IVPDNVIYTTLIDGF---CKM--------------GNVAAAYRLFDEMRGLNIIPDLL 397
+V NV + F CK+ L L PD
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT--PD-- 301
Query: 398 TYTAIICGFCLTGKMVEAEKLFHEMLGRGLE--PDEIVYT-----ALIDGYCKAGGMKKA 450
E + L + L + P E++ T ++I A ++
Sbjct: 302 ----------------EVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-----AESIRDG 340
Query: 451 FSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANEL--LHEMC---RKGLQ-----LN 500
+ +N H V L + S + E + + L+
Sbjct: 341 LATWDNWKH-------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 501 IYTYNS-------IVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAY----CKS 549
+ ++ +VN L K + + P T +I Y K
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEK-------------QPKESTI-SIPSIYLELKVKL 439
Query: 550 GEMVKAHELLRD--MLDKGLQPSVVTFNVLMNGFC------MSGMIEDGEKL-------- 593
H + D + K + L F + IE E++
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN-IEHPERMTLFRMVFL 498
Query: 594 -LKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHC 652
+++ +K ++ ++ +N ++ YK I + Y L+
Sbjct: 499 DFRFLEQK-IRHDSTAWNASGSILNTLQQLK----FYKPY----ICDNDPKYERLV---- 545
Query: 653 KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKK---YLEA 695
+ + FL + NL S Y L++ L + + EA
Sbjct: 546 --NAILD--FLP----KIEENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 64/463 (13%), Positives = 129/463 (27%), Gaps = 166/463 (35%)
Query: 306 ELQRVLKLIEEMQIKG-----------LKPNPYTYNSVVRLLCKTSKVVEAETIL----R 350
+ L+L + K L+ N Y ++ + + T + R
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 351 EMM---NQGIVPDNV----IYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAII 403
+ + NQ NV Y L ++ A L D + G
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP--AKNVLIDGVLG-------------- 160
Query: 404 CG-FCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRL 462
G + + + K+ +M +I + L C + + + +++ ++
Sbjct: 161 SGKTWVALDVCLSYKVQCKM------DFKIFWLNL--KNCNS--PETVLEMLQKLLY-QI 209
Query: 463 TPNVVTYTALADGLCK-SGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAV 521
PN +T+ +D + + L R+ L+ Y N L +L V
Sbjct: 210 DPN---WTSRSDHSSNIKLRIHSIQAEL----RRLLKSKPY-----ENCLL----VLLNV 253
Query: 522 KLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELL--RD--MLD--KGLQPSVVTFN 575
+ + + + F + CK LL R + D + ++ +
Sbjct: 254 Q---NAKAW----NAF------NLSCKI--------LLTTRFKQVTDFLSAATTTHISLD 292
Query: 576 VLMNGFCMSGMIEDGEKLL-KW--MLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGM 632
++ + LL K+ + L T NP + +
Sbjct: 293 HHSMTLTP----DEVKSLLLKYLDCRPQDLPREVLTTNPRR--------------L--SI 332
Query: 633 CAQGITPDGNTYNILLQGHCKARNMKEAW--FLHKEMVQKGFNLTTSSYNALIKGFLKRK 690
A+ I R+ W + H + +I+ L
Sbjct: 333 IAESI-----------------RDGLATWDNWKH---------VNCDKLTTIIESSLNVL 366
Query: 691 KYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLEL 733
+ E R++F+ V F + I L
Sbjct: 367 EPAEYRKMFDR--------------LSV---FPP-SAHIPTIL 391
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 751 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.53 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.37 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.35 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.18 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.15 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.1 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.06 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.06 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.05 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.04 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.03 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.01 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.01 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.0 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.99 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.98 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.95 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.94 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.94 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.93 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.92 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.91 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.9 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.89 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.84 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.83 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.8 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.78 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.73 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.73 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.71 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.68 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.67 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.67 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.64 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.64 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.62 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.61 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.61 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.59 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.59 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.56 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.54 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.54 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.52 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.49 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.48 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.48 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.47 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.47 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.46 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.46 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.46 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.46 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.45 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.44 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.44 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.44 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.43 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.43 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.42 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.42 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.39 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.38 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.36 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.34 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.33 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.31 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.3 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.29 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.28 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.26 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.25 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.25 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.25 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.24 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.24 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.21 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.2 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.18 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.18 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.15 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.14 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.13 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.1 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.1 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.07 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.07 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.06 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.04 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.04 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.02 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.98 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.93 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.93 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.88 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.88 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.88 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.87 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.75 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.69 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.69 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.64 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.57 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.57 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.55 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.49 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.44 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.38 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.22 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.16 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.0 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.95 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.9 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.88 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.86 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.78 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.75 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.7 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.64 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.4 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.21 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.17 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.15 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.09 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.08 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.01 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.96 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.95 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.8 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.05 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.87 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.78 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.67 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.5 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.33 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.29 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.25 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.1 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.39 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.16 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.09 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.53 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.3 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.17 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.11 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.1 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.55 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.47 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.21 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.89 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.73 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.59 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.41 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.87 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.36 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.31 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.99 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 80.4 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=380.19 Aligned_cols=475 Identities=11% Similarity=0.029 Sum_probs=294.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVR 334 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 334 (751)
++..|+.++..|.+.|++++|+.+|++|... .|+..++..++..|.+.|++++|..+|+++... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 4444555555555555555555555554432 234444555555555555555555555544322 334445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004470 335 LLCKTSKVVEAETILREMMN---------------QGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTY 399 (751)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~---------------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 399 (751)
+|.+.|++++|.++|+++.. .|.+++..+|+.++.+|.+.|++++|.++|++|.+.++. +...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHH
Confidence 55555555555555543211 122345667777777777777777777777777665432 44455
Q ss_pred HHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004470 400 TAIICGFCLTGKMVEAEK--L-FHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGL 476 (751)
Q Consensus 400 ~~li~~~~~~g~~~~A~~--~-~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 476 (751)
..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 555444333322222111 1 333443333334455666666777777777777777776654 35677777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004470 477 CKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAH 556 (751)
Q Consensus 477 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 556 (751)
.+.|++++|.++|+++.+.+.. +..++..++.++.+.|++++|..+++++.+.. +.+..+++.++..|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 7777777777777777665433 55667777777777777777777777776543 456677777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004470 557 ELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG 636 (751)
Q Consensus 557 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 636 (751)
++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777776542 3456677777777777777777777777776653 2356667777777777777777777777776643
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 637 ITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQK----GFNLT--TSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD 710 (751)
Q Consensus 637 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 710 (751)
+.+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 549 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TND 549 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCC
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 335667777777777777777777777777664 44555 5677777777777777777777777777654 456
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 711 REIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
..+|..++.+|.+.|++++|.+.++++++...
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 67777777777777777777777777776543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=374.23 Aligned_cols=503 Identities=12% Similarity=0.012 Sum_probs=334.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMI 263 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 263 (751)
++..|..++..|.+.|++++|+.+|++|... .|+..++..+...+. ..|++++|..+|+++... .+++.+++.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYC-CTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHH-HTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHH-HcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 4456777888888888888888888887754 566666665555554 567777777777777543 45677777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHH
Q 004470 264 HCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVV 343 (751)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 343 (751)
.+|++.|++++|+++|+++.... .. ..++.+.++ ...|.+++..+|+.++.+|.+.|+++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~----~~-----~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFR----KD-----EKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC-------------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCCcc----cc-----ccccccccc-----------cccccchhHHHHHHHHHHHHHcCCHH
Confidence 77777777777777777422111 00 000000000 01123344556666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH--HH-HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 344 EAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAY--RL-FDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFH 420 (751)
Q Consensus 344 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~--~~-~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (751)
+|.++|++|.+.+ +.+...+..+...+...++.+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 218 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 6666666666543 223444444444333222222111 11 3334443333344555666666777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004470 421 EMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLN 500 (751)
Q Consensus 421 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~ 500 (751)
++.+. +++..+++.++.+|.+.|++++|..+|+++.+.++. +..++..++.++.+.|++++|.++++++.+.. +.+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 76654 456777777777777777777777777777665533 56667777777777777777777777776553 336
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004470 501 IYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNG 580 (751)
Q Consensus 501 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 580 (751)
..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 6677777777777777777777777776653 4556777777777777777777777777777654 4467777777777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhc
Q 004470 581 FCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ----GITPD--GNTYNILLQGHCKA 654 (751)
Q Consensus 581 ~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~ 654 (751)
|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 888888888888888777653 236677778888888888888888888877764 55666 67888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 655 RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDIN 721 (751)
Q Consensus 655 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (751)
|++++|.+.++++.+.++. +..+|..++.+|.+.|++++|.+.|+++++.. +.+...+..++.+|
T Consensus 530 g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 8888888888888877543 77888888888888888888888888888764 45666676666554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-27 Score=254.57 Aligned_cols=382 Identities=14% Similarity=0.070 Sum_probs=268.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcC
Q 004470 191 FFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFG 270 (751)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 270 (751)
++..+.+.|++++|.+.+.++.+. .|+...+...++.+....|++++|...++.+.+..+. +..+|..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence 567788999999999999998877 6877777777887777889999999999888887544 7888999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 004470 271 KIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILR 350 (751)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (751)
++++|+..|+++..... .+..+|..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+
T Consensus 82 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998877532 356678888888888888888888888888763 2245556677777778888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 351 EMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD 430 (751)
Q Consensus 351 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 430 (751)
++.+.. +.+..+|..+...+.+.|++++|...|+++.+.++. +...|..+...+...|++++|+..+++.+... +.+
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 887753 335677777777888888888888888877765433 45666677777777777777777777766542 224
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004470 431 EIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNG 510 (751)
Q Consensus 431 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~ 510 (751)
..++..+...+.+.|++++|...++++.+..+. +..+|..++..+.+.|++++|.+.++++.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 566666667777777777777777776665432 45566666666666666666666666666553 3355566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 511 LCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 511 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 584 (751)
+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+...|..+...+...
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHc
Confidence 666666666666666665543 3445566666666666666666666666665542 33444555555544443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-27 Score=252.48 Aligned_cols=383 Identities=13% Similarity=0.040 Sum_probs=278.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 333 VRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKM 412 (751)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 412 (751)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|...++...+..+ .+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 445566677777777776666652 33445555666666777777777777776665543 2566777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 413 VEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEM 492 (751)
Q Consensus 413 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 492 (751)
++|++.|++++... +.+..++..++..+.+.|++++|...++++.+..+. +...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777776642 224556777777777777777777777777765432 4456666777777778888888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 004470 493 CRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVV 572 (751)
Q Consensus 493 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 572 (751)
.+..+ .+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+..
T Consensus 162 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 76643 256777777778888888888888888877765 4556777777888888888888888888777653 44677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHC 652 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (751)
++..+...+...|++++|.+.++++.+... .+..+|..+...+...|++++|.+.++++++.. +.+..++..++..+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 788888888888888888888888877532 245677888888888888888888888888753 456778888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004470 653 KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGN 726 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (751)
+.|++++|+..++++++..+. +..++..++.+|.+.|++++|...++++++.. +.+...|..++..+.+.|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 888888888888888876433 67788888888888888888888888888753 4567777777777776653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=273.93 Aligned_cols=204 Identities=16% Similarity=0.186 Sum_probs=151.7
Q ss_pred HHHHHHhchhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 004470 240 VVKSFTEFPELGICWNT-ASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGE---------LQR 309 (751)
Q Consensus 240 a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~ 309 (751)
+..+.+++.+.+..+.+ ..++.+|++|+|.|++++|+++|++|.+.|+.||.+|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44444555555554333 35777888888888888888888888888888888888888888887654 567
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004470 310 VLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRG 389 (751)
Q Consensus 310 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 389 (751)
|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77788888877888888888888888888888888888888888777778888888888888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004470 390 LNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCK 443 (751)
Q Consensus 390 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 443 (751)
.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 788888888888888888888888888888888777777888888777777765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=270.94 Aligned_cols=206 Identities=16% Similarity=0.270 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC---------HH
Q 004470 274 EAHLLLLQMELRGCSPDV-VSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSK---------VV 343 (751)
Q Consensus 274 ~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~ 343 (751)
.+..+.+++.+++..+.+ ..++.+|++|++.|++++|+++|++|.+.|++||..||+.||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345566677777665544 35788899999999999999999999999999999999999999987654 67
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 344 EAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEML 423 (751)
Q Consensus 344 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 423 (751)
+|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 424 GRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKS 479 (751)
Q Consensus 424 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 479 (751)
+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999888889999999888888764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-24 Score=238.19 Aligned_cols=440 Identities=10% Similarity=-0.047 Sum_probs=267.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004470 257 ASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLL 336 (751)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 336 (751)
..+..+...+.+.|++++|+..|+++...+ |+..+|..+...+.+.|++++|++.++++.+.+ +.+..++..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 445556666777777777777777766654 566777777777777777777777777776653 23455666777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 337 CKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAE 416 (751)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 416 (751)
.+.|++++|...|+++...+ +++......++..+.+......+.+.+..+...+..|+...+..-..............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 77777777777777776664 23444444444444444333344333333322222222111111100000000000000
Q ss_pred HHHHHHHHCCC---------CCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHh-----C--CC------CCCHHHHHH
Q 004470 417 KLFHEMLGRGL---------EPDEIVYTALIDGYCK---AGGMKKAFSLHNNMVH-----M--RL------TPNVVTYTA 471 (751)
Q Consensus 417 ~~~~~m~~~~~---------~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~--~~------~~~~~~~~~ 471 (751)
.+...+..... +.+...+......+.. .|++++|...++++.+ . .+ +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11111100000 1123344444444443 6777777777777766 2 11 123456667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 472 LADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGE 551 (751)
Q Consensus 472 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 551 (751)
+...+...|++++|...++++.+.... ...+..+...+...|++++|...++++.... +.+...+..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 777777778888888888777776433 6677777777777888888888887777654 4566677777777788888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 552 MVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKG 631 (751)
Q Consensus 552 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 631 (751)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777654 3456677777777777888888888888777653 22456677777777888888888888877
Q ss_pred HHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 632 MCAQGIT-PD----GNTYNILLQGHCK---ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMR 703 (751)
Q Consensus 632 m~~~g~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 703 (751)
+.+.... ++ ...+..++..+.. .|++++|...++++++..+. +..++..++..|.+.|++++|...+++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7663211 11 3367777777877 78888888888888776543 66777788888888888888888888887
Q ss_pred HCC
Q 004470 704 RGG 706 (751)
Q Consensus 704 ~~~ 706 (751)
+..
T Consensus 477 ~~~ 479 (514)
T 2gw1_A 477 DLA 479 (514)
T ss_dssp HHC
T ss_pred Hhc
Confidence 753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-24 Score=237.17 Aligned_cols=443 Identities=8% Similarity=-0.002 Sum_probs=335.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 291 VVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDG 370 (751)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 370 (751)
...+......+.+.|++++|++.|+++.+.+ |+..+|..+..++.+.|++++|.+.++++++.+ +.+..++..+...
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567778888999999999999999999875 688999999999999999999999999998874 4567889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 004470 371 FCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKA 450 (751)
Q Consensus 371 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 450 (751)
|.+.|++++|...|+++...+.. +......++..+........+.+.+..+...+..|+...+..-.............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999999999887643 44444555555544444444444443333222222222111111111111112222
Q ss_pred HHHHHHHHhCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----c--CC------CCCHHHHH
Q 004470 451 FSLHNNMVHMRL---------TPNVVTYTALADGLCK---SGELETANELLHEMCR-----K--GL------QLNIYTYN 505 (751)
Q Consensus 451 ~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~--g~------~~~~~~~~ 505 (751)
..+...+..... +.+...+..+...+.. .|++++|...++++.+ . .. +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 222111111111 1235555555555554 8999999999999988 3 11 22356788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004470 506 SIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSG 585 (751)
Q Consensus 506 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 585 (751)
.+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 88999999999999999999998875 448889999999999999999999999999874 557788999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 586 MIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHK 665 (751)
Q Consensus 586 ~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 665 (751)
++++|...++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..++..+.+.|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999987433 56788899999999999999999999999853 3367788899999999999999999999
Q ss_pred HHHHCCCCC-C----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 666 EMVQKGFNL-T----TSSYNALIKGFLK---RKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 666 ~~~~~~~~p-~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
++.+..+.. + ...+..++..+.. .|++++|...++++++.. +.+...+..++.++.+.|++++|.+.++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 998754331 1 3489999999999 999999999999999864 567888999999999999999999999999
Q ss_pred HHcCCC
Q 004470 738 IECYLV 743 (751)
Q Consensus 738 ~~~~~~ 743 (751)
++....
T Consensus 476 ~~~~~~ 481 (514)
T 2gw1_A 476 ADLART 481 (514)
T ss_dssp HHHCSS
T ss_pred HHhccc
Confidence 987653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-22 Score=224.51 Aligned_cols=432 Identities=13% Similarity=0.007 Sum_probs=321.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVR 334 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 334 (751)
....+..+...+.+.|++++|+..|+++..... .+..+|..+...|.+.|++++|++.++++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 456788889999999999999999999887653 578889999999999999999999999998875 346788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHh
Q 004470 335 LLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLN------IIPDLLTYTAIICGFCL 408 (751)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~ 408 (751)
++...|++++|...|+. ... .|+. ....+..+...+...+|...++++.... ..|+. ..+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSV-LSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH-Hhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 99999999999999963 332 2222 2233556666677788999999886642 22333 33445666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHc--------CChhHHHHHHHHHHhCCCCCC-------HHHHHHH
Q 004470 409 TGKMVEAEKLFHEMLGRGLEPDEI-VYTALIDGYCKA--------GGMKKAFSLHNNMVHMRLTPN-------VVTYTAL 472 (751)
Q Consensus 409 ~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l 472 (751)
..+.+.+...+...... .+... ....+...+... |++++|..+++++.+..+. + ..++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYT 249 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHH
Confidence 77777766555443322 22322 333333333222 4788899999988876533 3 2356677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 004470 473 ADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEM 552 (751)
Q Consensus 473 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 552 (751)
...+...|++++|.+.++++.+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 778888899999999999998874 457788888888889999999999999988765 56788888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 553 VKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGM 632 (751)
Q Consensus 553 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 632 (751)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999988764 4466788888899999999999999999988863 335667888888899999999999999988
Q ss_pred HHCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 633 CAQGI-----TPDGNTYNILLQGHCKA----------RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 633 ~~~g~-----~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 697 (751)
.+... ......+..+...+... |++++|+..++++++..+. +...+..++.+|.+.|++++|.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHH
Confidence 76321 11223344556777777 9999999999999887554 77888899999999999999999
Q ss_pred HHHHHHHCC
Q 004470 698 LFEEMRRGG 706 (751)
Q Consensus 698 ~~~~~~~~~ 706 (751)
.|+++++..
T Consensus 484 ~~~~al~~~ 492 (537)
T 3fp2_A 484 LFEDSAILA 492 (537)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998854
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-22 Score=214.05 Aligned_cols=343 Identities=13% Similarity=0.088 Sum_probs=207.8
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 325 NPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIIC 404 (751)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 404 (751)
+...+..++..+.+.|++++|..+|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.++. +...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 44555666666666666666666666665542 334555666666666666666666666666554432 4555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004470 405 GFCLTGKMVEAEKLFHEMLGRGLEPD-E---IVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSG 480 (751)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 480 (751)
.+...|++++|.+.|+++... .|+ . ..+..++..+.. ..+..+...+.+.|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 666666666666666666554 222 2 334333332100 01122233456666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004470 481 ELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLR 560 (751)
Q Consensus 481 ~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 560 (751)
++++|...++++.+... .+...+..+..++.+.|++++|...++++.+.. +.+..++..++..|...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666665532 255666666666666666666666666665543 4556666666666666777777777766
Q ss_pred HHHhCCCCCCHHHHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHHcCCHH
Q 004470 561 DMLDKGLQPSVVTFNVL------------MNGFCMSGMIEDGEKLLKWMLEKGLKPN-----AATYNPLIKQHCLRNDMR 623 (751)
Q Consensus 561 ~~~~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~l~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~ 623 (751)
++.+.. +.+...+..+ +..+...|++++|...++++.+. .|+ ...+..+...+.+.|+++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 666542 2234444333 66777778888888888777764 333 335667777777888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhcC-
Q 004470 624 TTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG------------FLKRK- 690 (751)
Q Consensus 624 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g- 690 (751)
+|.+.++++.+.. +.+...|..++.+|...|++++|...++++++..+. +...+..+..+ |...|
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 8888888777642 235677777888888888888888888888776444 55666666533 22233
Q ss_pred ----CHHHHHHHHHH
Q 004470 691 ----KYLEARELFEE 701 (751)
Q Consensus 691 ----~~~~A~~~~~~ 701 (751)
+.+++.+.+++
T Consensus 391 ~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRK 405 (450)
T ss_dssp STTCCTTHHHHHHHH
T ss_pred CccCCHHHHHHHHHH
Confidence 55666777776
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-22 Score=215.30 Aligned_cols=362 Identities=13% Similarity=0.051 Sum_probs=260.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 345 AETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLG 424 (751)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 424 (751)
+...+.++.... +.+...+..++..|.+.|++++|..+|+++.+..+. +..+|..+..++...|++++|+..|+++++
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444332 344556666667777777777777777766654322 566666666667777777777777776666
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004470 425 RGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNV---VTYTALADGLCKSGELETANELLHEMCRKGLQLNI 501 (751)
Q Consensus 425 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~ 501 (751)
.+ +.+...+..++..|.+.|++++|...|+++.+..+. +. ..+..++..+..
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~----------------------- 143 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM----------------------- 143 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------
Confidence 53 234556666666666666666666666666654321 22 334433333211
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004470 502 YTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGF 581 (751)
Q Consensus 502 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 581 (751)
..+..+...+...|++++|+..++++.+.. +.+...+..++..|.+.|++++|.+.|+++.+.. +.+..++..++..|
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 112334556888999999999999998875 6788999999999999999999999999998764 56789999999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEKGLKPNAATYNPL------------IKQHCLRNDMRTTAKIYKGMCAQGITPD-----GNTY 644 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~ 644 (751)
...|++++|...++++.+... .+...+..+ ...+...|++++|.+.|+++++. .|+ ...+
T Consensus 222 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~ 298 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSK 298 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHH
Confidence 999999999999999997632 234444444 78899999999999999999984 454 4578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----
Q 004470 645 NILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDI---- 720 (751)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---- 720 (751)
..++..+.+.|++++|+..++++++..+. +..+|..++.+|...|++++|...++++++.. +.+...+..+..+
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLL 376 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHh
Confidence 88999999999999999999999987543 78999999999999999999999999999854 4567777777633
Q ss_pred --------HHhcC-----ChhHHHHHHHH-HHHc
Q 004470 721 --------NFEEG-----NTEITLELCDA-AIEC 740 (751)
Q Consensus 721 --------~~~~g-----~~~~A~~~~~~-~~~~ 740 (751)
|...| +.+++.+.+++ +++.
T Consensus 377 ~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp HHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred hcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence 33344 66778888887 4444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-22 Score=219.96 Aligned_cols=444 Identities=11% Similarity=0.010 Sum_probs=260.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHH
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIH 264 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 264 (751)
+..+..++..+.+.|++++|+..|+++++. .|+.......++.++...|++++|++.|+++.+.++. +..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHH
Confidence 456788999999999999999999999887 4655555555555555678888888888888877654 6777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHhcCCH
Q 004470 265 CLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKG--LKPNPYTYNSVVRLLCKTSKV 342 (751)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~ 342 (751)
.+.+.|++++|+..|+.+... |+ .....+..+...+..++|.+.++++.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLN---GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhcC---CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 888888888888888533221 22 12223445555566677777777775431 111222223344445555555
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 343 VEAETILREMMNQGIVPDNV-IYTTLIDGFCK--------MGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMV 413 (751)
Q Consensus 343 ~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 413 (751)
+.+...+...... .+... ....+...+.. .|++++|..+++++.+..+. +...+..+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~----------- 242 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA----------- 242 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH-----------
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH-----------
Confidence 5544433332221 11111 11222211111 12444444444444443221 11110000
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 414 EAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMC 493 (751)
Q Consensus 414 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 493 (751)
..++..+...+...|++++|...++++.+.. |+..++..+...+...|++++|.+.++++.
T Consensus 243 -----------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 243 -----------------ALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 1123444455555666666666666665543 335555566666666666666666666666
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004470 494 RKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVT 573 (751)
Q Consensus 494 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 573 (751)
+.... +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...
T Consensus 304 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 380 (537)
T 3fp2_A 304 DLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEV 380 (537)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred ccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 55322 55566666666666677777777766666554 3445666667777777777777777777776653 445566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CCHhhHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCC
Q 004470 574 FNVLMNGFCMSGMIEDGEKLLKWMLEKGLK-----PNAATYNPLIKQHCLR----------NDMRTTAKIYKGMCAQGIT 638 (751)
Q Consensus 574 ~~~li~~~~~~g~~~~A~~l~~~~~~~g~~-----p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~ 638 (751)
+..+...+...|++++|...++++.+.... .....+..+...+... |++++|...++++.+.. +
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p 459 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-P 459 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-C
Confidence 777777777777777777777776654211 1112233444556666 88888888888887753 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 639 PDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 639 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
.+...+..+...|.+.|++++|.+.|+++.+..+.
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 35677888888888888888888888888876543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.8e-17 Score=183.34 Aligned_cols=430 Identities=13% Similarity=0.097 Sum_probs=301.7
Q ss_pred CchhHHHHHHHhhcCChHHHHHHHHhhhhC---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHH
Q 004470 95 FRSDHLIWVLMDIRSDYRLVLDFFDWACLR---REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFV 171 (751)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~al~~f~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 171 (751)
-+++.-..||. .+.+-=....+|+... ...+.+--...+..+...|.+.+|..++++++..+.. -..+...-
T Consensus 951 ~d~~lW~~vl~---~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~--fs~n~~Lq 1025 (1630)
T 1xi4_A 951 KDPELWGSVLL---ESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV--FSEHRNLQ 1025 (1630)
T ss_pred cCHHHHHHHhc---CCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCc--ccccHHHH
Confidence 34555555552 2223334556665432 1122333345566666788888888888888744320 00111111
Q ss_pred HHHHH-hhhcCCCC---------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHH
Q 004470 172 ERLIY-TYKDWGSD---------PHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVV 241 (751)
Q Consensus 172 ~~l~~-~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~ 241 (751)
..++. +.+.-+.. ......++..+...|++++|..+|++... . ...+..+....+++++|.
T Consensus 1026 nlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~----~~A~~VLie~i~nldrAi 1096 (1630)
T 1xi4_A 1026 NLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV-----N----TSAVQVLIEHIGNLDRAY 1096 (1630)
T ss_pred HHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC-----H----HHHHHHHHHHHhhHHHHH
Confidence 11111 11111111 11234478999999999999999998621 1 112333444568899999
Q ss_pred HHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 242 KSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKG 321 (751)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 321 (751)
++.++.. +..+|..+..++.+.|++++|++.|.+. -|...|..++..+.+.|++++|++.+....+..
T Consensus 1097 E~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1097 EFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred HHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 9998662 5788999999999999999999999664 467788899999999999999999999888764
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004470 322 LKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTA 401 (751)
Q Consensus 322 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 401 (751)
+++...+.++.+|++.+++++.... ++ .++...|..+.+.|...|++++|..+|... ..|..
T Consensus 1165 --~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~r 1226 (1630)
T 1xi4_A 1165 --RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGR 1226 (1630)
T ss_pred --ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHH
Confidence 4444455699999999998864443 22 356677888999999999999999999885 37999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004470 402 IICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGE 481 (751)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 481 (751)
+...+++.|++++|.+.+++. .+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.
T Consensus 1227 LA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~ 1295 (1630)
T 1xi4_A 1227 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGY 1295 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCC
Confidence 999999999999999999887 366889999999999999999988765432 467778899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHH
Q 004470 482 LETANELLHEMCRKGLQLNIYTYNSIVNGLCKA--GNILQAVKLMEDMEVAGFHP------DTFTYTTIMDAYCKSGEMV 553 (751)
Q Consensus 482 ~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~ 553 (751)
+++|+.+++...... +-....|.-+...+++. ++..++.+.|..-. ++++ +...|..+.-.|.+.|+++
T Consensus 1296 feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A 1296 FEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred HHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence 999999998887654 33445666666666654 35555666555332 2222 4677889999999999999
Q ss_pred HHHHHH-------------HHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 554 KAHELL-------------RDMLDKGLQPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 554 ~A~~~~-------------~~~~~~~~~p~~~~~~~li~~~~~~ 584 (751)
.|...+ .+.+.. ..+...|...+..|...
T Consensus 1373 nA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~ 1414 (1630)
T 1xi4_A 1373 NAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEF 1414 (1630)
T ss_pred HHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhh
Confidence 998432 222222 44777777777777743
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-19 Score=183.88 Aligned_cols=331 Identities=13% Similarity=0.053 Sum_probs=215.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 360 DNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALID 439 (751)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 439 (751)
|+..+..+...+.+.|++++|...|+++.+..+. +...+..+...+...|++++|+..++++++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 3455666777777777777777777777665433 56667777777777777777777777776652 235566677777
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 004470 440 GYCKAGGMKKAFSLHNNMVHMRLT--PNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNI 517 (751)
Q Consensus 440 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 517 (751)
.+...|++++|...++++.+..+. .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777665320 12333333311100 01122234556666777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 518 LQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWM 597 (751)
Q Consensus 518 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 597 (751)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777766654 4556666667777777777777777777776653 446666777777777777777777777776
Q ss_pred HHcCCCCCHhhHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCCHHHH
Q 004470 598 LEKGLKPNAATYN------------PLIKQHCLRNDMRTTAKIYKGMCAQGITPD-G----NTYNILLQGHCKARNMKEA 660 (751)
Q Consensus 598 ~~~g~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~g~~~~A 660 (751)
.+.... +...+. .+...+...|++++|.+.++++.+.. |+ . ..+..+...+.+.|++++|
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 664221 222222 23556778888888888888888743 33 2 2345567788888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 661 WFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINF 722 (751)
Q Consensus 661 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (751)
+..++++++..+. +..++..++..+...|++++|...|+++++.. +.+...+..+..+..
T Consensus 292 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 292 IRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 8888888886543 67788888888888888888888888888754 445566655555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-17 Score=180.57 Aligned_cols=366 Identities=12% Similarity=0.072 Sum_probs=292.4
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 004470 308 QRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK----TSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCK----MGNVAA 379 (751)
Q Consensus 308 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~ 379 (751)
..+++.+.+..+.| +...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 33456666665554 67778888888887 889999999999888864 66788888888888 889999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHH
Q 004470 380 AYRLFDEMRGLNIIPDLLTYTAIICGFCL----TGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCK----AGGMKKAF 451 (751)
Q Consensus 380 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 451 (751)
|.+.|++..+.| +...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .++.++|.
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999888765 66777778888877 788999999999888765 56777778888877 77889999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 004470 452 SLHNNMVHMRLTPNVVTYTALADGLCK----SGELETANELLHEMCRKGLQLNIYTYNSIVNGLCK----AGNILQAVKL 523 (751)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~ 523 (751)
..|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .++.++|...
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999888864 67788888888887 788999999999888765 56677777777776 7889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHH
Q 004470 524 MEDMEVAGFHPDTFTYTTIMDAYCK----SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS-----GMIEDGEKLL 594 (751)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~l~ 594 (751)
+++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|... ++.++|...+
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 98888754 45667777777777 788999999998888765 566777788888776 8889999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 004470 595 KWMLEKGLKPNAATYNPLIKQHCLRN---DMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEM 667 (751)
Q Consensus 595 ~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~ 667 (751)
++..+.| +...+..+...|...| +.++|.++|++..+.| +...+..|...|.. .+++++|+..|+++
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8888764 4566777777777656 7888899998888864 67777888888887 78899999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 004470 668 VQKGFNLTTSSYNALIKGFLK----RKKYLEARELFEEMRRGG 706 (751)
Q Consensus 668 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 706 (751)
.+.+ ++..+..|...|.+ .+++++|...|+++.+.+
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8875 57788888888887 788999999999988865
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-19 Score=182.84 Aligned_cols=318 Identities=11% Similarity=0.040 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004470 396 LLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADG 475 (751)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 475 (751)
...+..+...+...|++++|+..|+++++.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 3445555556666666666666666655542 224555555555666666666666666655554322 44555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004470 476 LCKSGELETANELLHEMCRKGLQ--LNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMV 553 (751)
Q Consensus 476 ~~~~g~~~~A~~l~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 553 (751)
+...|++++|...++++.+.... .+...+..+..... ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 55556666665555555544210 01112211111100 111233467889999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 554 KAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMC 633 (751)
Q Consensus 554 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 633 (751)
+|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998864 5688899999999999999999999999999864 3467889999999999999999999999999
Q ss_pred HCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 004470 634 AQGITPDGNTYN------------ILLQGHCKARNMKEAWFLHKEMVQKGFNLTT----SSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 634 ~~g~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~ 697 (751)
+.. +.+...+. .++..+.+.|++++|...++++.+..+. +. ..+..++..+.+.|++++|+.
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 853 22344333 2366789999999999999999987544 44 235568899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 698 LFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
.++++++.. +.+...+..++.++.+.|++++|.+.++++++....
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999864 568899999999999999999999999999987644
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-17 Score=180.07 Aligned_cols=397 Identities=13% Similarity=0.034 Sum_probs=329.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCCHHH
Q 004470 273 KEAHLLLLQMELRGCSPDVVSFSTIINGYCY----LGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK----TSKVVE 344 (751)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~ 344 (751)
..++..++...+. .+...+..+...|.. .+++++|++.|++..+.| +...+..|...|.. .+++++
T Consensus 24 ~~~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 3446667766665 477888888888888 899999999999998875 67788889999998 999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004470 345 AETILREMMNQGIVPDNVIYTTLIDGFCK----MGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCL----TGKMVEAE 416 (751)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 416 (751)
|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|+
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999875 67788889999988 889999999999998875 67788888888887 78999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 004470 417 KLFHEMLGRGLEPDEIVYTALIDGYCK----AGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCK----SGELETANEL 488 (751)
Q Consensus 417 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l 488 (751)
+.|++..+.| +...+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|.++
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999875 67888889999988 899999999999999875 67788888888886 8899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 004470 489 LHEMCRKGLQLNIYTYNSIVNGLCK----AGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKS-----GEMVKAHELL 559 (751)
Q Consensus 489 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~ 559 (751)
+++..+.| +...+..+...+.. .++.++|+..+++..+.| +...+..+...|... +++++|...|
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 99998875 56677778888887 899999999999998764 566777888888887 8999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004470 560 RDMLDKGLQPSVVTFNVLMNGFCMSG---MIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCL----RNDMRTTAKIYKGM 632 (751)
Q Consensus 560 ~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m 632 (751)
++..+.| +...+..+...|...| +.++|.+.+++..+.| +...+..+...|.. .++.++|.+.|++.
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999875 5678888888888766 8899999999999874 67788889999988 89999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 633 CAQGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFN-L-TTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 633 ~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.+.| +...+..|...|.+ .++.++|...|+++.+.++. | ++.....+...+. .+.+.|.+...++.+
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIE 466 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHH
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHH
Confidence 9865 57788889999988 89999999999999998744 2 3344444444333 234455555555444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-16 Score=176.41 Aligned_cols=421 Identities=14% Similarity=0.112 Sum_probs=307.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRG--CSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSV 332 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 332 (751)
|+.--...+.+|+..|.+.+|++++++....+ +.-+....+.++....+. +..+..+..++.... ....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 34444677888899999999999999987431 113445666677777666 556666666655422 14447
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 333 VRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKM 412 (751)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 412 (751)
...+...|.+++|..+|++.. -.....+.++. ..|++++|.++.++.. +..+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence 788888999999999999852 12223344433 7788999999988662 567888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 413 VEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEM 492 (751)
Q Consensus 413 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 492 (751)
++|++.|.+. .|...|..++..+.+.|++++|.+.+....+.. +++...+.++.+|++.+++++.....
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9999998663 377788889999999999999999998887764 33333445888899998888544332
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 004470 493 CRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVV 572 (751)
Q Consensus 493 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 572 (751)
+ .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++.. +..
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~ 1251 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STR 1251 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHH
Confidence 2 346667778889999999999999999874 378889999999999999999998762 668
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHC 652 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (751)
+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... +-....|+-|...|+
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 8888888898999988888866542 3356667788889999999999999998887543 224556666666666
Q ss_pred hc--CCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHH-------------HHHHHHCCCCCCHHH
Q 004470 653 KA--RNMKEAWFLHKEMVQKGF----NLTTSSYNALIKGFLKRKKYLEAREL-------------FEEMRRGGLVADREI 713 (751)
Q Consensus 653 ~~--g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~~~~~~ 713 (751)
+. +++.+++++|..-..... --+...|..++..|.+.|+++.|... |...+. -..|++.
T Consensus 1326 Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~el 1403 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVEL 1403 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHH
Confidence 53 466777777765443210 01567888999999999999988832 222221 2557888
Q ss_pred HHHHHHHHHhcC---------------ChhHHHHHHH
Q 004470 714 YYFFVDINFEEG---------------NTEITLELCD 735 (751)
Q Consensus 714 ~~~l~~~~~~~g---------------~~~~A~~~~~ 735 (751)
|+..+..|...+ +.+++.+++.
T Consensus 1404 yykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1404 YYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 888888887777 6777777665
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-18 Score=179.39 Aligned_cols=293 Identities=10% Similarity=0.000 Sum_probs=210.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004470 429 PDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIV 508 (751)
Q Consensus 429 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li 508 (751)
.+...+..++..+...|++++|..+++++.+..+. +...+..++..+...|++++|..+++++.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 34445556666667777777777777777665432 4455566666777777777777777777765432 556677777
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 004470 509 NGLCKAG-NILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMI 587 (751)
Q Consensus 509 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 587 (751)
..+...| ++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 7777777 7777777777777654 4456677777777777788888888777777653 33455666677777778888
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 004470 588 EDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG--------ITPDGNTYNILLQGHCKARNMKE 659 (751)
Q Consensus 588 ~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~~~ 659 (751)
++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. .+.+..++..+...+.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888777653 2356677777777888888888888888777631 12345678888888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChh
Q 004470 660 AWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDIN-FEEGNTE 728 (751)
Q Consensus 660 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 728 (751)
|+..++++++..+. +...+..++..+.+.|++++|.+.++++++.. +.+...+..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999998887554 77888889999999999999999999988754 55777888888877 4556543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-17 Score=178.41 Aligned_cols=432 Identities=10% Similarity=0.057 Sum_probs=291.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 279 LLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIV 358 (751)
Q Consensus 279 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 358 (751)
|++..+.. +-+...|..++. +.+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++.+.. .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 44444433 247778888887 47789999999999998876 3446667888888888899999999999998886 4
Q ss_pred CCHHHHHHHHHHH-HHcCCHHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 004470 359 PDNVIYTTLIDGF-CKMGNVAAAYR----LFDEMRG-LNIIP-DLLTYTAIICGFCL---------TGKMVEAEKLFHEM 422 (751)
Q Consensus 359 p~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~~~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 422 (751)
|+...|..++... ...|+.++|.+ +|+.... .|..| +...|...+..... .|++++|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777777776533 35677776665 6666543 24333 46677777765544 67888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH------HcC
Q 004470 423 LGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMC------RKG 496 (751)
Q Consensus 423 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~g 496 (751)
+..........|..........|. .+...++. .+.++++.|..++.++. +..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 763111112233222211111110 00111110 12344556665555421 111
Q ss_pred ---CCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cC
Q 004470 497 ---LQLN--------IYTYNSIVNGLCKA----GNI----LQAVKLMEDMEVAGFHPDTFTYTTIMDAYCK-------SG 550 (751)
Q Consensus 497 ---~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g 550 (751)
++|+ ...|...+...... ++. +++..+|+++.... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 2333 23455444332221 222 46777888887753 5677888888887775 68
Q ss_pred CHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHHcCC
Q 004470 551 EMV-------KAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPN--AATYNPLIKQHCLRND 621 (751)
Q Consensus 551 ~~~-------~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~--~~~~~~l~~~~~~~g~ 621 (751)
+++ +|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ ...|..++..+.+.|+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcC
Confidence 876 89999999886323556888889999999999999999999999885 444 2478888888888999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 622 MRTTAKIYKGMCAQGITPDGNTYNILLQG-HCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFE 700 (751)
Q Consensus 622 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 700 (751)
+++|.++|++.++.. +.+...|...+.. +...|+.++|..+|+++++..+. ++..|..++..+.+.|+.++|..+|+
T Consensus 372 ~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 372 IKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 999999999998752 2233333332222 34689999999999999887543 78899999999999999999999999
Q ss_pred HHHHCC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 701 EMRRGG-LVA--DREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 701 ~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
+++..+ ..| ....|...+....+.|+.+.+.++.+++++...
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 999863 122 244777778888888999999999999887654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.6e-17 Score=177.97 Aligned_cols=428 Identities=13% Similarity=0.090 Sum_probs=287.2
Q ss_pred HhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhc
Q 004470 119 DWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEA 198 (751)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 198 (751)
+.+....|.+..++..++.. ...|++++|+.++++++... |.++..|..++..+.+.
T Consensus 3 e~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~----------------------P~~~~~w~~~~~~~~~~ 59 (530)
T 2ooe_A 3 EKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF----------------------PSSGRFWKLYIEAEIKA 59 (530)
T ss_dssp HHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC----------------------TTCHHHHHHHHHHHHHT
T ss_pred hhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC----------------------CCCHHHHHHHHHHHHhc
Confidence 44455678888888888874 67899999999999998765 77888999999999999
Q ss_pred CChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHH----HHHhchhc-CCCc-CHHHHHHHHHHHHh----
Q 004470 199 RKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVK----SFTEFPEL-GICW-NTASYNIMIHCLCR---- 268 (751)
Q Consensus 199 g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~li~~~~~---- 268 (751)
|++++|..+|++++.. .|+...+...+.-.....|+.+.|++ +|+++... |..| +...|...+....+
T Consensus 60 ~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~ 137 (530)
T 2ooe_A 60 KNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV 137 (530)
T ss_dssp TCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc
Confidence 9999999999999987 46766666655544444566666654 77777543 4333 56778888776655
Q ss_pred -----cCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 004470 269 -----FGKIKEAHLLLLQMELRGCSPD---VVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTS 340 (751)
Q Consensus 269 -----~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 340 (751)
.|++++|..+|++..+. |. ...|.......-..|. ..+..++. .+.+
T Consensus 138 ~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~ 192 (530)
T 2ooe_A 138 GSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSR 192 (530)
T ss_dssp SSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHH
T ss_pred ccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhH
Confidence 78899999999998873 33 2333322221111110 00111110 0123
Q ss_pred CHHHHHHHHHHH------HHCC---CCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHhCCCCCC
Q 004470 341 KVVEAETILREM------MNQG---IVPD--------NVIYTTLIDGFCKM----GNV----AAAYRLFDEMRGLNIIPD 395 (751)
Q Consensus 341 ~~~~A~~~~~~m------~~~g---~~p~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~p~ 395 (751)
++++|..+++++ .+.. ++|+ ...|...+...... ++. +.|..+|++.....+. +
T Consensus 193 ~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~ 271 (530)
T 2ooe_A 193 DYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-H 271 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-C
Confidence 445555555442 1111 2333 23455444332221 222 3667777777765432 5
Q ss_pred HHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 004470 396 LLTYTAIICGFCL-------TGKMV-------EAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMR 461 (751)
Q Consensus 396 ~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 461 (751)
...|..++..+.. .|+++ +|..++++.++.-.+.+...+..++..+.+.|++++|..+|+++++..
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~ 351 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 351 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence 6777777776664 67766 888888888763123357778888888888888888888888888753
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004470 462 LTPN-VVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVN-GLCKAGNILQAVKLMEDMEVAGFHPDTFTY 539 (751)
Q Consensus 462 ~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 539 (751)
+. + ...|..++..+.+.|++++|.++|++..+.... +...|...+. .+...|+.++|..+|+...+.. +.+...|
T Consensus 352 p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~ 428 (530)
T 2ooe_A 352 DI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYV 428 (530)
T ss_dssp SS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred cc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHH
Confidence 22 3 247888888888888888888888888876322 3333322222 2346888999999999887764 4567888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 540 TTIMDAYCKSGEMVKAHELLRDMLDKGL-QP--SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEK 600 (751)
Q Consensus 540 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 600 (751)
..++..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+..+.+++.+.
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888999999999999887632 22 2447777788778889999999988888875
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-17 Score=172.89 Aligned_cols=282 Identities=12% Similarity=0.043 Sum_probs=149.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 293 SFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFC 372 (751)
Q Consensus 293 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 372 (751)
.+..+...+...|++++|+++++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 34444555555555555555555555442 2234444445555555555555555555555542 223445555555555
Q ss_pred HcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 004470 373 KMG-NVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAF 451 (751)
Q Consensus 373 ~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 451 (751)
..| ++++|.+.|++..+.... +...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHH
Confidence 555 555555555555554322 34455555555555555555555555555442 223344444555555556666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004470 452 SLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKG--------LQLNIYTYNSIVNGLCKAGNILQAVKL 523 (751)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~~~~~~~~~li~~~~~~g~~~~A~~~ 523 (751)
..++++.+..+. +..++..+...+...|++++|...++++.+.. .+.+...+..+...+...|++++|...
T Consensus 180 ~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 666555554322 45555555556666666666666665554431 022334555555566666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004470 524 MEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGF 581 (751)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 581 (751)
++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+..++
T Consensus 259 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 259 HRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 66655543 3345555556666666666666666666555442 33455555555544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-18 Score=180.98 Aligned_cols=290 Identities=10% Similarity=0.001 Sum_probs=203.6
Q ss_pred cCChhHHHH-HHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004470 444 AGGMKKAFS-LHNNMVHMRLT---PNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQ 519 (751)
Q Consensus 444 ~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 519 (751)
.|++++|.. .+++..+.... .+...+..+...+.+.|++++|...++++.+... .+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 355555655 55544433211 1234455666666666666666666666666532 255566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHhc
Q 004470 520 AVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNV---------------LMNGFCMS 584 (751)
Q Consensus 520 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---------------li~~~~~~ 584 (751)
|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 666666666554 4456666666666666666666766666666543 112111111 13333488
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004470 585 GMIEDGEKLLKWMLEKGLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFL 663 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 663 (751)
|++++|...++++.+..... +..++..+...|...|++++|.+.++++++.. +.+..++..++..+.+.|++++|+..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998864321 47888899999999999999999999998853 34678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCChhHHHH
Q 004470 664 HKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD-----------REIYYFFVDINFEEGNTEITLE 732 (751)
Q Consensus 664 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~ 732 (751)
++++++..+. +...+..++.+|.+.|++++|...++++++.. +.+ ...|..++.++...|++++|..
T Consensus 274 ~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 274 YRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 9999987544 78899999999999999999999999998743 222 6889999999999999999999
Q ss_pred HHHHHHH
Q 004470 733 LCDAAIE 739 (751)
Q Consensus 733 ~~~~~~~ 739 (751)
++++.++
T Consensus 352 ~~~~~l~ 358 (368)
T 1fch_A 352 ADARDLS 358 (368)
T ss_dssp HHTTCHH
T ss_pred hHHHHHH
Confidence 9886654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-17 Score=171.16 Aligned_cols=287 Identities=13% Similarity=0.120 Sum_probs=127.9
Q ss_pred HHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 004470 228 SRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGEL 307 (751)
Q Consensus 228 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 307 (751)
..+....|++++|.++++++. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++
T Consensus 10 ~~ll~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 10 QVLIEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCH
Confidence 334446688999999998882 3358999999999999999999999653 5777899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 308 QRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEM 387 (751)
Q Consensus 308 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (751)
++|++.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|...|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999977777664 4567888999999999999999888774 367779999999999999999999999876
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 004470 388 RGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVV 467 (751)
Q Consensus 388 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 467 (751)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|+..|+++.|......+. .++.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHh
Confidence 26899999999999999999999988 278899999999999999999966544322 3444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHH
Q 004470 468 TYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKA--GNILQAVKLMEDMEVAGFHP------DTFTY 539 (751)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~ 539 (751)
-...++..|.+.|.+++|..+++...... +-....|.-+..+|++- +++.+.++.|.. +.+++| +...|
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w 285 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLW 285 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHH
Confidence 45578888999999999999999887664 44566777777666654 244444444432 122222 34557
Q ss_pred HHHHHHHHHcCCHHHHHHH
Q 004470 540 TTIMDAYCKSGEMVKAHEL 558 (751)
Q Consensus 540 ~~li~~~~~~g~~~~A~~~ 558 (751)
..+.-.|.+.++++.|...
T Consensus 286 ~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 286 AELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHH
Confidence 7788888888888888763
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-17 Score=174.62 Aligned_cols=256 Identities=11% Similarity=-0.016 Sum_probs=140.4
Q ss_pred hcCCHHHHHH-HHHHHHHCCC---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004470 303 YLGELQRVLK-LIEEMQIKGL---KPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVA 378 (751)
Q Consensus 303 ~~g~~~~A~~-~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 378 (751)
..|++++|++ .+++...... ..+...+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 6665543311 1135567777788888888888888888887764 446677777888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHH
Q 004470 379 AAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTA---------------LIDGYCK 443 (751)
Q Consensus 379 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---------------li~~~~~ 443 (751)
+|.+.|+++.+..+. +..++..+...+...|++++|++.++++...... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 888888887766533 6777777778888888888888888887765321 1111111 1112224
Q ss_pred cCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004470 444 AGGMKKAFSLHNNMVHMRLTP-NVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVK 522 (751)
Q Consensus 444 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 522 (751)
.|++++|...++++.+..+.. +..++..+...+.+.|++++|...++++.+... .+...+..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555554432211 244445555555555555555555555444321 134444455555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 523 LMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDML 563 (751)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 563 (751)
.++++.+.. +.+..++..+...|.+.|++++|...|+++.
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555544432 3334444445555555555555555554444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-16 Score=172.17 Aligned_cols=386 Identities=12% Similarity=-0.005 Sum_probs=240.6
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C
Q 004470 325 NPYTYNSVVRLLCKTSKVVEAETILREMMNQ--------GIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGL-----N 391 (751)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 391 (751)
....|+.|...+...|++++|++.|++.++. ..+....+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4566888888888899999999888876542 11234567888888888888888888888877542 1
Q ss_pred -CCC-CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCChhHHHHHHHHHHhCCCCC
Q 004470 392 -IIP-DLLTYTAIICGFCL--TGKMVEAEKLFHEMLGRGLEPDEIVYTALIDG---YCKAGGMKKAFSLHNNMVHMRLTP 464 (751)
Q Consensus 392 -~~p-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~ 464 (751)
..+ ...++..+..++.. .+++++|++.|++.++.. +-+...+..+... +...++.++|++.+++..+..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 111 34555555545544 456888888888887753 2245555554444 34456777888888887776433
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 465 NVVTYTALADGLCK----SGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYT 540 (751)
Q Consensus 465 ~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 540 (751)
+..++..+...+.. .|++++|.+.+++...... .+...+..+...+...|++++|...+++..+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 55566555555443 3567788888888777643 366777788888888888888888888887764 45566666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC
Q 004470 541 TIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRN 620 (751)
Q Consensus 541 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g 620 (751)
.+...|...+.... ... . ..........+..++|...+++..+.. +.+..++..+...|...|
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 66665543211111 000 0 000011112234678888888888763 235567888899999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 621 DMRTTAKIYKGMCAQGITPDG--NTYNILLQ-GHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 697 (751)
++++|.+.|++.++....+.. ..+..+.. .+...|+.++|+..|+++++..+. ..... +....+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~---------~~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKE---------KMKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHH---------HHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHH---------HHHHHHHH
Confidence 999999999999885433221 12233332 235778999999999999986543 22221 22344566
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 698 LFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
++++.++.+ +.++.+|..++.+|...|++++|++.|+++++.+..
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 677777654 667889999999999999999999999999997754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-18 Score=178.14 Aligned_cols=270 Identities=10% Similarity=-0.036 Sum_probs=207.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 465 NVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMD 544 (751)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 544 (751)
+...+..+...+.+.|++++|.+.|+++.+... .+...+..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445577778888888888888888888877643 367788888888888888888888888887765 556788888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHhhHHHHHH
Q 004470 545 AYCKSGEMVKAHELLRDMLDKGLQ---------PSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLK-PNAATYNPLIK 614 (751)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~~---------p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~-p~~~~~~~l~~ 614 (751)
.|...|++++|...++++.+.... .....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 888888888888888888764210 01233445577888899999999999999887432 15778889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 615 QHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 694 (751)
.|...|++++|.+.++++++.. +.+..++..++..|.+.|++++|+..++++++..+. +..++..++.+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998853 346888999999999999999999999999987544 68899999999999999999
Q ss_pred HHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 695 ARELFEEMRRGGL---V--------ADREIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 695 A~~~~~~~~~~~~---~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
|...++++++... . .+...|..+..++...|+.+.|.+..++.+
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 9999999987321 1 135778899999999999999988776543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-16 Score=171.99 Aligned_cols=385 Identities=10% Similarity=-0.046 Sum_probs=260.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C---CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 004470 289 PDVVSFSTIINGYCYLGELQRVLKLIEEMQIK-----G---LKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQ----- 355 (751)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 355 (751)
.....||.|...+...|++++|++.|++..+. + .+....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 44678999999999999999999999987542 1 1223567999999999999999999999987652
Q ss_pred C-C-CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCC
Q 004470 356 G-I-VPDNVIYTTLIDGFCKM--GNVAAAYRLFDEMRGLNIIPDLLTYTAIICG---FCLTGKMVEAEKLFHEMLGRGLE 428 (751)
Q Consensus 356 g-~-~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~ 428 (751)
+ . .....++..+..++.+. +++++|++.|++..+..+. +...+..+... +...++.++|++.+++.++.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 1 12345677666666654 4699999999999886543 45555555544 445688889999999988763 3
Q ss_pred CCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004470 429 PDEIVYTALIDGYCK----AGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTY 504 (751)
Q Consensus 429 p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 504 (751)
.+...+..+...+.. .|+.++|...+++.....+. +..++..+...|...|++++|.+.+++..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 356667666655544 46788999999998887543 7888999999999999999999999999987543 66777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 505 NSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 505 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 584 (751)
..+..+|...+....+ .. . ..........+.+++|...+++..+.. +.+..++..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~~---------~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMN---------LR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhh---------HH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 7777666432211111 00 0 001111122334678888888887654 44566788888899999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHh--hHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 585 GMIEDGEKLLKWMLEKGLKPNAA--TYNPLIK-QHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAW 661 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 661 (751)
|++++|+..|++.++....+... .+..+.. .+...|+.++|++.|++.++. .|+..... +..+.+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHH
Confidence 99999999999998864433221 2233332 235678999999999999884 45533221 2234556
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 662 FLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 662 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
+++++.++.++. ++.+|..++.+|...|++++|++.|+++++.+
T Consensus 417 ~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 417 KIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 667777776554 78899999999999999999999999999865
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.7e-17 Score=165.72 Aligned_cols=267 Identities=13% Similarity=0.023 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 467 VTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAY 546 (751)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 546 (751)
..+..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34455556666666666666666666655322 55566666666666677777777666666553 44566666666667
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCChhHHHHHHHHHHHcCCCCCHhhHHH
Q 004470 547 CKSGEMVKAHELLRDMLDKGLQPSVVTFNVL--------------MN-GFCMSGMIEDGEKLLKWMLEKGLKPNAATYNP 611 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~ 611 (751)
...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+... .+...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 77777777777777666542 1122222222 22 36677889999999999887643 36778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004470 612 LIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKK 691 (751)
Q Consensus 612 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 691 (751)
+...+...|++++|.+.++++.+.. +.+..++..++..+...|++++|...++++++..+. +...+..++..+.+.|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998853 346788999999999999999999999999987544 78899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 692 YLEARELFEEMRRGGLVA------------DREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 692 ~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
+++|.+.++++.+.. +. +...+..++.++.+.|+.++|.+.++++++.
T Consensus 256 ~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999999998853 22 4778889999999999999999998876654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-16 Score=156.20 Aligned_cols=258 Identities=10% Similarity=0.011 Sum_probs=173.6
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004470 440 GYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQ 519 (751)
Q Consensus 440 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 519 (751)
-....|++..|+...+......+.+.......+..+|...|++++|+..++. ..+|+..++..+...+...|+.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3445667777777666554432111123445556677777777777765543 124455666777777777777777
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 520 AVKLMEDMEVAGF-HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWML 598 (751)
Q Consensus 520 A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 598 (751)
|++.++++...+. +.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777766543 33455566666777777777777777765 4566777777777778888888888887777
Q ss_pred HcCCCCCHhhH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 599 EKGLKPNAATY---NPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT 675 (751)
Q Consensus 599 ~~g~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 675 (751)
+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++++..+. +
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-H 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence 653 443211 11223333457888888888888876 3457778888888888888888888888888887655 7
Q ss_pred HHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHH
Q 004470 676 TSSYNALIKGFLKRKKYLE-ARELFEEMRRGGLVADRE 712 (751)
Q Consensus 676 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~ 712 (751)
+.++..++..+...|+.++ +.++++++++.. |.++.
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~ 270 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPF 270 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChH
Confidence 7888888888888888865 567888888753 33443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-17 Score=170.14 Aligned_cols=233 Identities=11% Similarity=-0.023 Sum_probs=124.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004470 364 YTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCK 443 (751)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 443 (751)
+..+...+.+.|++++|.+.|+++.+..+. +..+|..+...+...|++++|+..|+++++.. +.+..++..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 444444455555555555555555443322 34445555555555555555555555554431 2234445555555555
Q ss_pred cCChhHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH
Q 004470 444 AGGMKKAFSLHNNMVHMRLT---------PNVVTYTALADGLCKSGELETANELLHEMCRKGLQ-LNIYTYNSIVNGLCK 513 (751)
Q Consensus 444 ~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-~~~~~~~~li~~~~~ 513 (751)
.|++++|...++++.+..+. .....+..+...+...|++++|.+.++++.+.... ++...+..+...+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 55555555555555443210 01222334456666667777777777776665322 145666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 004470 514 AGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKL 593 (751)
Q Consensus 514 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 593 (751)
.|++++|+..++++.+.. +.+..++..+..+|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 677777777776666553 4456666666666666677777777666666542 33466666666666666666666666
Q ss_pred HHHHHHc
Q 004470 594 LKWMLEK 600 (751)
Q Consensus 594 ~~~~~~~ 600 (751)
++++.+.
T Consensus 304 ~~~al~~ 310 (365)
T 4eqf_A 304 FLTALSL 310 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666553
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=164.15 Aligned_cols=238 Identities=12% Similarity=0.114 Sum_probs=67.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 004470 268 RFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAET 347 (751)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 347 (751)
+.|++++|.++++++ ++..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 566677777777666 23346777777777777777777777542 366677777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 348 ILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGL 427 (751)
Q Consensus 348 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 427 (751)
.++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66655553 3445666677777777777777666653 145556666666666666666666666654
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004470 428 EPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSI 507 (751)
Q Consensus 428 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~l 507 (751)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 23555666666666666666666555 15556666666666666666663333221 1223333345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 508 VNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYC 547 (751)
Q Consensus 508 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 547 (751)
+..|.+.|++++|..+++...... +-....|+-+.-.|+
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 555555555555555555555433 333444544444444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-16 Score=161.04 Aligned_cols=279 Identities=11% Similarity=-0.031 Sum_probs=182.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004470 398 TYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLC 477 (751)
Q Consensus 398 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 477 (751)
.+..+...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|...++++.+..+ .+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHH
Confidence 34455555666666666666666665542 22455555555666666666666666666555432 24555555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHHcCCHHHH
Q 004470 478 KSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTI-MD-AYCKSGEMVKA 555 (751)
Q Consensus 478 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A 555 (751)
..|++++|.+.++++.+.... +...+..+... .|+......+ .. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 556666666555555544221 11111111000 0111111112 22 26677888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004470 556 HELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ 635 (751)
Q Consensus 556 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 635 (751)
...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88888887764 4477888888888888899999999888888763 235677888888889999999999999988875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 636 GITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL-----------TTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 636 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
. +.+...+..+...+.+.|++++|.+.++++++..+.. +...|..++.++.+.|++++|..++++.++
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3 3467788889999999999999999999998764432 467888999999999999999998876543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-18 Score=190.80 Aligned_cols=121 Identities=13% Similarity=0.238 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQME---LRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNS 331 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 331 (751)
-..+||+||++||+.|++++|.++|++|. ..|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45789999999999999999999998876 358899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004470 332 VVRLLCKTSKV-VEAETILREMMNQGIVPDNVIYTTLIDGFCKMG 375 (751)
Q Consensus 332 li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 375 (751)
+|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 99999999984 788999999999999999999999987766543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.5e-16 Score=155.03 Aligned_cols=256 Identities=8% Similarity=0.020 Sum_probs=210.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004470 474 DGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMV 553 (751)
Q Consensus 474 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 553 (751)
.-....|+++.|+...+.+..............+..+|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 445668999999999887655422211335566788999999999999877552 3678888999999999999999
Q ss_pred HHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 554 KAHELLRDMLDKGL-QPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGM 632 (751)
Q Consensus 554 ~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 632 (751)
+|.+.++++...+. +.+...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988764 44677778888999999999999999987 457788999999999999999999999999
Q ss_pred HHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004470 633 CAQGITPDGNTY---NILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVA 709 (751)
Q Consensus 633 ~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 709 (751)
.+.. |+.... ..++..+...|++++|..+|+++++..+ .++..++.++.++.+.|++++|...++++++.. +.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 9863 553221 2233444556899999999999999854 489999999999999999999999999999875 66
Q ss_pred CHHHHHHHHHHHHhcCChhH-HHHHHHHHHHcCCC
Q 004470 710 DREIYYFFVDINFEEGNTEI-TLELCDAAIECYLV 743 (751)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~ 743 (751)
++.++..++..+...|+.++ +.++++++++..+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 88999999999999999976 67899999987654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.8e-18 Score=186.32 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=128.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 289 PDVVSFSTIINGYCYLGELQRVLKLIEEMQI---KGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYT 365 (751)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 365 (751)
--..|||+||++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3467999999999999999999999988764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 004470 366 TLIDGFCKMGN-VAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD------EIVYTALI 438 (751)
Q Consensus 366 ~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li 438 (751)
+||+++|+.|+ .++|.++|++|.+.|+.||..+|++++.+..+. ..++..+++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999998 478999999999999999999999999766554 344444444 3345544 34455566
Q ss_pred HHHHHcC
Q 004470 439 DGYCKAG 445 (751)
Q Consensus 439 ~~~~~~g 445 (751)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-15 Score=160.55 Aligned_cols=307 Identities=13% Similarity=0.041 Sum_probs=167.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 411 KMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGM---KKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANE 487 (751)
Q Consensus 411 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 487 (751)
+.++|+..|++..+.|... .+..|...|...+.. .++.+.+......| +...+..|...|...+.++++..
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 4445555555555443221 333344444333322 22333344333332 23444555555555554433333
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHH
Q 004470 488 LLHEMCRKGLQLNIYTYNSIVNGLCKAG---NILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKS----GEMVKAHELLR 560 (751)
Q Consensus 488 l~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~ 560 (751)
....+.+.-...++..+..+...|...| +.++|+..|++..+.| +++...+..+...|... +++++|.+.|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 3222221111112225566666666666 6677777777776666 45555555555555443 56777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC-----CHHHHHHHHHHH
Q 004470 561 DMLDKGLQPSVVTFNVLMNG-F--CMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRN-----DMRTTAKIYKGM 632 (751)
Q Consensus 561 ~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~m 632 (751)
+.. .| +...+..|... + ...++.++|.+.|++..+.| +...+..|...|. .| +.++|.++|++.
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 766 32 44555555555 3 34667777777777777655 5555566666654 44 777777777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 004470 633 CAQGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK----RKKYLEARELFEEMRR 704 (751)
Q Consensus 633 ~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 704 (751)
. .| +...+..|...|.. ..++++|...|++..+.| ++.....|...|.. ..+.++|..+|+.+.+
T Consensus 314 a-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 314 V-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp T-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred h-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 6 32 55666666666655 337778888888777765 33455566666653 3477788888888777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 705 GGLVADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 705 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
.| .++.......+......++.++|.++.++..+.
T Consensus 387 ~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 387 QD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 66 222222222222222334566677766665543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-14 Score=143.04 Aligned_cols=226 Identities=15% Similarity=0.087 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 004470 467 VTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGF--HPD----TFTYT 540 (751)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 540 (751)
..+..+...+...|++++|.+.++++.+.. .+...+..+..++...|++++|...++++.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445555555555566666666555555554 3455555555555555555555555555544220 001 34444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC
Q 004470 541 TIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRN 620 (751)
Q Consensus 541 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g 620 (751)
.+...+...|++++|...++++.+. .|+. ..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~------------------------------------------~~~~~~~ 119 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA------------------------------------------DILTKLR 119 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH------------------------------------------HHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh------------------------------------------HHHHHHh
Confidence 4455555555555555555554442 2221 1233444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004470 621 DMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFE 700 (751)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 700 (751)
++++|.+.++++.... +.+...+..++..+...|++++|+..++++++..+. +..++..++..+...|++++|+..++
T Consensus 120 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4555555555555421 112344555555555555555555555555554333 45555555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 701 EMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 701 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
++++.. +.+...+..++.++.+.|++++|.+.++++++..
T Consensus 198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 555542 3345555555555555555555555555555443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-14 Score=139.83 Aligned_cols=200 Identities=11% Similarity=-0.030 Sum_probs=132.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHH
Q 004470 533 HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPL 612 (751)
Q Consensus 533 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l 612 (751)
+++...+..+...+.+.|++++|...|++.++.. +.+...+..+...+.+.|++++|+..+++.++... .+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 3445555556666666666666666666666543 34555666666666666666666666666665421 134555556
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004470 613 IKQHCLR-----------NDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNA 681 (751)
Q Consensus 613 ~~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 681 (751)
...+... |++++|++.+++.++.. +.+...+..+...+...|++++|+..|+++++.+ .++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 6666666 88888888888888753 2257778888888899999999999999988877 58888889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 682 LIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 682 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
++.+|...|++++|+..|+++++.. |.+...+..++..+.+.|++++|++.++++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999988864 5677888888888999999999988888764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=6e-13 Score=133.15 Aligned_cols=224 Identities=12% Similarity=0.049 Sum_probs=135.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004470 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCK----SGEMVKAHELLRDMLDKGLQPSVVTFN 575 (751)
Q Consensus 500 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 575 (751)
+..++..+...+...|++++|...|++..+ +.+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 344445555555555555555555555555 2234445555555555 666666666666665543 455555
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004470 576 VLMNGFCM----SGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCL----RNDMRTTAKIYKGMCAQGITPDGNTYNIL 647 (751)
Q Consensus 576 ~li~~~~~----~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 647 (751)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 56666665 666666666666666543 45555566666666 666666666666666643 44555566
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 648 LQGHCK----ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK----RKKYLEARELFEEMRRGGLVADREIYYFFVD 719 (751)
Q Consensus 648 i~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (751)
...|.. .+++++|+..+++..+.+ ++..+..+...|.. .+++++|+..++++.+.+ +...+..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666665 667777777777666653 45566666666666 677777777777766653 2555666666
Q ss_pred HHHh----cCChhHHHHHHHHHHHcC
Q 004470 720 INFE----EGNTEITLELCDAAIECY 741 (751)
Q Consensus 720 ~~~~----~g~~~~A~~~~~~~~~~~ 741 (751)
.|.+ .|++++|+++++++++.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 677777777777776655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.6e-15 Score=140.89 Aligned_cols=195 Identities=13% Similarity=0.041 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
.++..++.++.+.|++++|+..|+++++. .|+.......++.++...|++++|+..|+++.+..|. +..++..+...
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~ 82 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 33344444444444444444444444433 2333333333333333334444444444444443322 33444444444
Q ss_pred HHhc-----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 004470 266 LCRF-----------GKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVR 334 (751)
Q Consensus 266 ~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 334 (751)
+.+. |++++|+..|++..+... -+...|..+...+...|++++|++.|++..+.. .+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 4444 666666666666555432 244555556666666666666666666665554 35555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 335 LLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEM 387 (751)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (751)
.+...|++++|...+++.++.. +.+..++..+...+.+.|++++|...|++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666665542 234555666666666666666666666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-14 Score=154.86 Aligned_cols=381 Identities=12% Similarity=0.061 Sum_probs=176.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 004470 262 MIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGEL---QRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK 338 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 338 (751)
+...+.+.|++++|+++|++..+.|. ...+..|...|...|+. ++|+++|++..+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 44455556666666666666555432 22333444444445555 5555555555432 33444444443333
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 339 TS-----KVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMV 413 (751)
Q Consensus 339 ~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 413 (751)
.| ++++|...|++..+.|.. ..+..|...|...+..+++ .
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~--------------------------------~ 126 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPN--------------------------------V 126 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTT--------------------------------C
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCC--------------------------------H
Confidence 33 445555555555554421 1344444444443322221 1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 004470 414 EAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSG---ELETANELLH 490 (751)
Q Consensus 414 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~ 490 (751)
++.+.+......| +......|...|...+.++++........+.-...++..+..|...|...| +.++|++.|+
T Consensus 127 ~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~ 203 (452)
T 3e4b_A 127 NAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQME 203 (452)
T ss_dssp CHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 2233333333222 122333444445444433333332222111111112225555666666666 5666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHH
Q 004470 491 EMCRKGLQLNIYTYNSIVNGLCKA----GNILQAVKLMEDMEVAGFHPDTFTYTTIMDA-Y--CKSGEMVKAHELLRDML 563 (751)
Q Consensus 491 ~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~ 563 (751)
+..+.|.. +...+..+...|... ++.++|+..|++.. . -+...+..+... + ...+++++|.+.|++..
T Consensus 204 ~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 204 AGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 66665533 444444444444333 46666666666655 2 233444444444 2 34566677777777666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 004470 564 DKGLQPSVVTFNVLMNGFCMSG-----MIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCL----RNDMRTTAKIYKGMCA 634 (751)
Q Consensus 564 ~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 634 (751)
+.| +...+..|...|. .| +.++|...|++.. . -+...+..|...|.. ..+.++|.++|++..+
T Consensus 279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 655 5555666666555 34 6677777766665 2 244555555555543 3377777777777776
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 635 QGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 635 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.|. ......|...|.. ..+.++|...|+...+.|.. +.......+......++.++|..+.++..+
T Consensus 351 ~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 351 NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 552 2334455555543 34777777777777776632 222222222222233455666666666554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-14 Score=140.11 Aligned_cols=225 Identities=12% Similarity=0.058 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHHH
Q 004470 431 EIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQ--LN----IYTY 504 (751)
Q Consensus 431 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--~~----~~~~ 504 (751)
...+..+...+...|++++|...++++.+.. .+..++..+...+...|++++|.+.++++.+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4678889999999999999999999999887 68899999999999999999999999998875322 12 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 505 NSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 505 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 584 (751)
..+...+...|++++|...++++... .|+. ..+.+.|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 99999999999999999999999886 4663 34667788899999999888753 33455666666666677
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 585 GMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLH 664 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 664 (751)
|++++|...++++.+... .+..++..+...+...|++++|.+.++++++.. +.+...+..+...+.+.|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777777766665421 134444444445555555555555555544432 122344444444444444444444444
Q ss_pred HHHHH
Q 004470 665 KEMVQ 669 (751)
Q Consensus 665 ~~~~~ 669 (751)
+++++
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-14 Score=146.76 Aligned_cols=251 Identities=11% Similarity=0.018 Sum_probs=183.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCC-hhHH
Q 004470 126 EPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARK-LNEA 204 (751)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 204 (751)
|.+..++..++.++...|++++|...+++++..+ |.++.+|..++.+|...|+ +++|
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~----------------------P~~~~a~~~~g~~l~~~g~d~~eA 151 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN----------------------AANYTVWHFRRVLLKSLQKDLHEE 151 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----------------------ccCHHHHHHHHHHHHHcccCHHHH
Confidence 3445677778888888888999998888888765 6777888888888888886 9999
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004470 205 RKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 205 ~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (751)
+..|+++++. .|+....-..++.++...|++++|+..|+++++..+. +..+|..+..++.+.|++++|+..|+++.+
T Consensus 152 l~~~~~al~l--~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 152 MNYITAIIEE--QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHH--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999988887 5666555555555555678888888888888888766 788888888888888888888888888887
Q ss_pred cCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCCcccHHHHHHHHHhcC--CHHHHHHHHHHHHHCC
Q 004470 285 RGCSPDVVSFSTIINGYCY-LGELQRV-----LKLIEEMQIKGLKPNPYTYNSVVRLLCKTS--KVVEAETILREMMNQG 356 (751)
Q Consensus 285 ~g~~p~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g 356 (751)
... -+...|+.+...+.+ .|..++| ++.+++..+.. +-+...|+.+...+...| ++++|.+.+.++ +.
T Consensus 229 l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~- 304 (382)
T 2h6f_A 229 EDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP- 304 (382)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-
T ss_pred hCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-
Confidence 654 467788888888888 5555776 47777777653 225667777777777777 577888877777 33
Q ss_pred CCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 004470 357 IVPDNVIYTTLIDGFCKMG---------NVAAAYRLFDEM-RGLNIIPDLLTYTAIICGF 406 (751)
Q Consensus 357 ~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~ 406 (751)
.+.+...+..+...|.+.| ..++|.++|+++ .+.++. ....|..+...+
T Consensus 305 ~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 305 SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 2445667777777777764 247788888877 554321 344455554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-12 Score=129.05 Aligned_cols=224 Identities=12% Similarity=0.016 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 465 NVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCK----AGNILQAVKLMEDMEVAGFHPDTFTYT 540 (751)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 540 (751)
+..++..+...+...|++++|.+.|++..+. -+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4555666666677777777777777776663 244566666666776 777777777777776654 566666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHH
Q 004470 541 TIMDAYCK----SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM----SGMIEDGEKLLKWMLEKGLKPNAATYNPL 612 (751)
Q Consensus 541 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~g~~p~~~~~~~l 612 (751)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 67777777 777777777777777654 66677777777777 777777877777777754 45566667
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 613 IKQHCL----RNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFNLTTSSYNALIK 684 (751)
Q Consensus 613 ~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 684 (751)
...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|+..++++.+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777766 778888888888887753 45667777788888 888888888888888764 3667777888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCC
Q 004470 685 GFLK----RKKYLEARELFEEMRRGG 706 (751)
Q Consensus 685 ~~~~----~g~~~~A~~~~~~~~~~~ 706 (751)
.|.+ .+++++|.+.++++.+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8887 888888888888888765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-13 Score=137.56 Aligned_cols=247 Identities=9% Similarity=0.011 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 004470 467 VTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPD--TFTYTTIMD 544 (751)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~ 544 (751)
..+......+...|++++|...++++.+.... +...+..+..++...|++++|+..++++.+....++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34555666667777777777777777665332 444566666677777777777777777666321111 234666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHH
Q 004470 545 AYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRT 624 (751)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 624 (751)
.+...|++++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777766543 3355666666666667777777777666666542 2234445555523334456666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHH
Q 004470 625 TAKIYKGMCAQGITPDGNTYNILLQGHCKARN---MKEAWFLHKEMVQKG-FNLT------TSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 625 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~ 694 (751)
|.+.++++++.. +.+...+..+...+...|+ +++|...++++++.. ..|+ ..+|..++..|.+.|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 666666666632 2235555556666666666 666666666666531 1112 1355556666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 695 ARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 695 A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
|.+.++++++.. |.+...+..+.
T Consensus 240 A~~~~~~al~~~-p~~~~a~~~l~ 262 (272)
T 3u4t_A 240 ADAAWKNILALD-PTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHC
T ss_pred HHHHHHHHHhcC-ccHHHHHHHhh
Confidence 666666666643 33444444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.3e-13 Score=131.61 Aligned_cols=199 Identities=13% Similarity=0.087 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH
Q 004470 539 YTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCL 618 (751)
Q Consensus 539 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~ 618 (751)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 22344444444444444444444444444444321 133444444444455
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 619 RNDMRTTAKIYKGMCAQGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 697 (751)
.|++++|.+.++++.+.+..| +...+..++..+...|++++|...++++.+..+. +...+..++..+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555544421222 2334444555555555555555555555544322 34455555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 698 LFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.++++.+.. +.+...+..++..+.+.|+.++|.++++++++..
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 555555432 3344445555555555555555555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-13 Score=135.70 Aligned_cols=236 Identities=9% Similarity=0.002 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFE 209 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 209 (751)
+.....+..+...|++++|...+++++... |.++.++..++.+|...|++++|++.|+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 61 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK----------------------YNSPYIYNRRAVCYYELAKYDLAQKDIE 61 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT----------------------CCCSTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345566667777777777777777776654 4555667777777777777777777777
Q ss_pred HHHhCCCccCH-HhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004470 210 KLLNYGLVISV-DSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCS 288 (751)
Q Consensus 210 ~~~~~g~~p~~-~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (751)
++++.+..|+. ......++.++...|++++|.+.|+++.+..+. +..++..+...|.+.|++++|+..|++..+.. +
T Consensus 62 ~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~ 139 (272)
T 3u4t_A 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-T 139 (272)
T ss_dssp HHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-C
T ss_pred HHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-C
Confidence 77764322222 111223333444556666666666666665443 45566666666666666666666666655442 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC----
Q 004470 289 PDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSK---VVEAETILREMMNQG-IVPD---- 360 (751)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~---- 360 (751)
.+...|..+...+...+++++|.+.++++.+.. +.+...+..+...+...|+ +++|...+++..+.. -.|+
T Consensus 140 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 218 (272)
T 3u4t_A 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchH
Confidence 344455555423333446666666666665542 1234445555555555555 555555555544321 0112
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 004470 361 --NVIYTTLIDGFCKMGNVAAAYRLFDEMRGL 390 (751)
Q Consensus 361 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 390 (751)
..+|..+...|.+.|++++|.+.|++..+.
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 219 ELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 134444555555555555555555555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-13 Score=140.48 Aligned_cols=250 Identities=9% Similarity=-0.001 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 466 VVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGN-ILQAVKLMEDMEVAGFHPDTFTYTTIMD 544 (751)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~ 544 (751)
...|..+...+.+.|++++|++.++++++.... +...|+.+..++...|+ +++|+..++++.+.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 345666677777777777777777777776433 56677777777777775 777777777777765 556777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH-cCCHH
Q 004470 545 AYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCL-RNDMR 623 (751)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~ 623 (751)
++...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++++.... +...|+.+...+.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 7777788888888887777664 446777777777777778888888888887776432 56677777777777 45545
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 004470 624 TT-----AKIYKGMCAQGITPDGNTYNILLQGHCKAR--NMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK------ 690 (751)
Q Consensus 624 ~A-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 690 (751)
+| ++.+++.++.. +-+...|..+...+.+.| ++++|++.+.++ +..+ .+...+..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccccc
Confidence 66 47777777743 225667888888888777 588888888887 4433 36778888888888764
Q ss_pred ---CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHh
Q 004470 691 ---KYLEARELFEEM-RRGGLVADREIYYFFVDINFE 723 (751)
Q Consensus 691 ---~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 723 (751)
.+++|+++++++ .+.+ +.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence 258888888888 6643 3345666666655543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=9e-14 Score=139.10 Aligned_cols=246 Identities=9% Similarity=-0.080 Sum_probs=155.1
Q ss_pred cCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004470 479 SGELETANELLHEMCRKGL---QLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKA 555 (751)
Q Consensus 479 ~g~~~~A~~l~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 555 (751)
.|++++|++.++++.+... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4556667777766665422 1134456666666777777777777777766654 44566677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004470 556 HELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ 635 (751)
Q Consensus 556 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 635 (751)
.+.++++.+.. +.+..++..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777776653 335666777777777777777777777777764 334333334444445667777777777766664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004470 636 GITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL---TTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADRE 712 (751)
Q Consensus 636 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 712 (751)
. +++...+ .++..+...++.++|+..++++.+..+.. +...+..++..|.+.|++++|...++++++.. +.+..
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 250 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHNFV 250 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTCH
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chhHH
Confidence 2 2333333 35566667777777877777776543211 14677788888888888888888888888753 22322
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 004470 713 IYYFFVDINFEEGNTEITLELC 734 (751)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~ 734 (751)
....++...|++++|++-+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 2345667778888877665
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-12 Score=129.08 Aligned_cols=199 Identities=13% Similarity=-0.017 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004470 503 TYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFC 582 (751)
Q Consensus 503 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 582 (751)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 33444444444555555555555444432 3344455555555555555555555555554432 234455555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 583 MSGMIEDGEKLLKWMLEKGLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAW 661 (751)
Q Consensus 583 ~~g~~~~A~~l~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 661 (751)
..|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 5566666666555555422223 33445555566666666666666666666542 224566666777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 662 FLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 662 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
..++++.+..+. +...+..++..+...|++++|.+.++++.+.
T Consensus 196 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777665433 5666667777777777777777777777664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-12 Score=125.53 Aligned_cols=201 Identities=12% Similarity=-0.016 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004470 501 IYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNG 580 (751)
Q Consensus 501 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 580 (751)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4455555566666666666666666655543 3445555556666666666666666666655542 3345555555555
Q ss_pred HHhc-CChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 581 FCMS-GMIEDGEKLLKWMLEKGLKPN-AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMK 658 (751)
Q Consensus 581 ~~~~-g~~~~A~~l~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 658 (751)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|.+.++++.+.. +.+...+..++..+.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 5566 666666666665555212222 3444555555555555555555555555432 123445555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 659 EAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 659 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
+|...++++.+..+..+...+..+...+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555555543312444455555555555555555555555544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-13 Score=132.48 Aligned_cols=201 Identities=9% Similarity=0.072 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMN 579 (751)
Q Consensus 500 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 579 (751)
....|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 33455555666666666666666666666543 4456666666666666666666666666666543 335556666666
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 580 GFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKE 659 (751)
Q Consensus 580 ~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 659 (751)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..++..+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666666543 2244555556666666666666666666665532 2245555566666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 660 AWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 660 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
|+..++++.+..+. +..++..++.+|.+.|++++|...++++++.
T Consensus 178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66666666655332 4556666666666666666666666666654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-13 Score=132.69 Aligned_cols=201 Identities=16% Similarity=0.131 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004470 536 TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQ 615 (751)
Q Consensus 536 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~ 615 (751)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3444455555555555555555555555432 3345555555555555556666655555555542 1244455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEA 695 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 695 (751)
+...|++++|.+.++++.+.. +.+...+..++..+.+.|++++|...++++.+..+. +...+..++..+.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 555556666665555555532 224455555555555555666666555555554332 455555555555555556666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 696 RELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
+..++++.+.. +.+...+..++.++.+.|++++|.+.++++++..
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 65555555542 3345555555555555566666665555555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-12 Score=123.19 Aligned_cols=203 Identities=12% Similarity=0.026 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004470 535 DTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIK 614 (751)
Q Consensus 535 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~ 614 (751)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34555666666666677777777666666543 3355666666666666677777777666666542 224556666666
Q ss_pred HHHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 615 QHCLR-NDMRTTAKIYKGMCAQGITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKY 692 (751)
Q Consensus 615 ~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 692 (751)
.+... |++++|.+.++++.+.+..|+ ...+..++..+...|++++|+..++++.+..+. +...+..++..+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 66666 677777777666665222232 455666666666667777777776666665433 456666666666666777
Q ss_pred HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 693 LEARELFEEMRRGGLV-ADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 693 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
++|...++++.+.. + .+...+..++..+...|+.++|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 77777766666643 3 455555556666666666666666666666544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=136.60 Aligned_cols=245 Identities=11% Similarity=-0.043 Sum_probs=135.8
Q ss_pred CChhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004470 445 GGMKKAFSLHNNMVHMRLT---PNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAV 521 (751)
Q Consensus 445 g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 521 (751)
|++++|...++++.+.... .+..++..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555543211 12344555555555555555555555555554322 4555555666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 522 KLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKG 601 (751)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g 601 (751)
..++++.+.. +.+..++..+...|.+.|++++|...++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 6666665543 3345566666666666666666666666666542 222223333333445566777777776665542
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 602 LKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGIT--P-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSS 678 (751)
Q Consensus 602 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 678 (751)
.++...+ .++..+...++.++|.+.++++.+.... | +...+..+...|.+.|++++|...++++++..+. +.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~-- 249 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF-- 249 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH--
Confidence 2232222 3555556666667777777766543211 0 1456777778888888888888888888776432 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 004470 679 YNALIKGFLKRKKYLEARELF 699 (751)
Q Consensus 679 ~~~l~~~~~~~g~~~~A~~~~ 699 (751)
.....++...|++++|++.+
T Consensus 250 -~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 -VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHhhHHHH
Confidence 23355666777777777665
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-10 Score=129.52 Aligned_cols=446 Identities=10% Similarity=0.036 Sum_probs=287.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC---HHHHHH
Q 004470 271 KIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSK---VVEAET 347 (751)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~ 347 (751)
..++.+..|++....+. -|..+|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.|+ ++.+.+
T Consensus 47 ~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34455656666665554 58999999999999999999999999999987 45567778888888888888 999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHH--------
Q 004470 348 ILREMMNQG-IVPDNVIYTTLIDGFCKMGNV--------AAAYRLFDEMRG-LNI-IP-DLLTYTAIICGFC-------- 407 (751)
Q Consensus 348 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p-~~~~~~~li~~~~-------- 407 (751)
+|++.+... .+|++..|...+....+.++. +...++|+.... .|. .| +...|...+.-..
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998873 137888888888776666654 334467776543 355 44 3567777775443
Q ss_pred -hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 408 -LTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETAN 486 (751)
Q Consensus 408 -~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 486 (751)
.+++++.+..+|+.++......-..+|......--..+. ..+..++.+. ..+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHH
Confidence 234577888888888853111112333322211111111 1122222111 11223333
Q ss_pred HHHHHHHHc--CC----C-----------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCC
Q 004470 487 ELLHEMCRK--GL----Q-----------L-----N---IYTYNSIVNGLCKAG-------NILQAVKLMEDMEVAGFHP 534 (751)
Q Consensus 487 ~l~~~m~~~--g~----~-----------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~ 534 (751)
..+.++... ++ + | + ...|...+..--..+ ..+.+..+|+++.... +-
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~ 341 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CF 341 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CC
Confidence 333332110 10 0 0 0 133444444322221 1234556777776653 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---------CC
Q 004470 535 DTFTYTTIMDAYCKSGEMVKAH-ELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL---------KP 604 (751)
Q Consensus 535 ~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~---------~p 604 (751)
....|...+..+...|+.++|. ++|++.... ++.+...|...+...-+.|++++|.++|+++++... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 7777888888778888888886 888888864 455666677778888888888889888888876410 13
Q ss_pred C------------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 004470 605 N------------AATYNPLIKQHCLRNDMRTTAKIYKGMCAQ-GITPDGNTYNILLQGHCKA-RNMKEAWFLHKEMVQK 670 (751)
Q Consensus 605 ~------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~ 670 (751)
+ ..+|...+....+.|+.+.|..+|.++.+. + ......|...+..-.+. ++.+.|.++|+..++.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 235677777777788899999999988875 2 12233343333333344 4588999999998887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004470 671 GFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVA--DREIYYFFVDINFEEGNTEITLELCDAAIECYLVG 744 (751)
Q Consensus 671 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 744 (751)
- +.++..|...+......|+.+.|..+|++++....++ ....|..++..-.+.|+.+.+.++.+++.+..+.+
T Consensus 500 ~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 500 F-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp H-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred C-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3 3367777788888888899999999999988764222 33567777777778899999999999998886653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=144.38 Aligned_cols=134 Identities=11% Similarity=0.037 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGI-TPD----GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN-----LTTS 677 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~ 677 (751)
++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|...++++++.... ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555666666666666666666554210 011 225666677777777777777777766653111 0134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 678 SYNALIKGFLKRKKYLEARELFEEMRRGG----L-VADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 678 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
++..++..|...|++++|...++++++.. . ......+..++..|.+.|++++|.++++++++..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 66677777777777777777777766521 0 0113456667777777777777777777776543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.5e-13 Score=140.21 Aligned_cols=307 Identities=15% Similarity=0.082 Sum_probs=190.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC
Q 004470 428 EPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPN----VVTYTALADGLCKSGELETANELLHEMCRK----GLQL 499 (751)
Q Consensus 428 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~ 499 (751)
......+......+...|++++|...++++.+.... + ..++..+...+...|++++|...+++..+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345566667777888888888888888888776432 3 356777788888888888888888876543 1111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HH
Q 004470 500 -NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGF-HPD----TFTYTTIMDAYCKSGE--------------------MV 553 (751)
Q Consensus 500 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~ 553 (751)
....+..+...+...|++++|...+++..+... .++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 234666777778888888888888887765420 012 3466677777777777 77
Q ss_pred HHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHHcCCHH
Q 004470 554 KAHELLRDMLDK----GLQ-PSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL-KPN----AATYNPLIKQHCLRNDMR 623 (751)
Q Consensus 554 ~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~ 623 (751)
+|.+.+++..+. +.. ....++..+...|...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 777777766532 111 1134566677777777777777777777664310 111 225666677777777777
Q ss_pred HHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHH
Q 004470 624 TTAKIYKGMCAQGI-TPD----GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN-LT----TSSYNALIKGFLKRKKYL 693 (751)
Q Consensus 624 ~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~ 693 (751)
+|.+.+++..+... .++ ..++..+...|...|++++|...++++.+.... .+ ..++..++..|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 77777777664210 011 445666777777777777777777776653111 11 346666777777777777
Q ss_pred HHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHH
Q 004470 694 EARELFEEMRRGGLVAD-----REIYYFFVDINFEEGNTEITLELCD 735 (751)
Q Consensus 694 ~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 735 (751)
+|...++++++..-... ..++..++..+...|+...+...+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 371 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIM 371 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 77777777776431112 1344455555666666555444433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-13 Score=143.29 Aligned_cols=301 Identities=14% Similarity=0.074 Sum_probs=227.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC
Q 004470 393 IPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD----EIVYTALIDGYCKAGGMKKAFSLHNNMVHM----RLTP 464 (751)
Q Consensus 393 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~ 464 (751)
.+....+......+...|++++|+..|++++..+ +.+ ...+..+...+...|++++|...++++.+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3456677788889999999999999999998863 223 357888899999999999999999987643 2111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCC--------------------HH
Q 004470 465 -NVVTYTALADGLCKSGELETANELLHEMCRKGLQ-LN----IYTYNSIVNGLCKAGN--------------------IL 518 (751)
Q Consensus 465 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~ 518 (751)
...++..+...+...|++++|...+++..+.... .+ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2557888899999999999999999998775211 12 3477888889999999 99
Q ss_pred HHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChh
Q 004470 519 QAVKLMEDMEVA----GF-HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGL-QPS----VVTFNVLMNGFCMSGMIE 588 (751)
Q Consensus 519 ~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~ 588 (751)
+|...+++.... +. +....++..+...|...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887542 11 11245678888999999999999999998875311 122 237888889999999999
Q ss_pred HHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 004470 589 DGEKLLKWMLEKGLK-PN----AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGI-TPD----GNTYNILLQGHCKARNMK 658 (751)
Q Consensus 589 ~A~~l~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~ 658 (751)
+|...+++..+.... ++ ..++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998875211 12 45778888999999999999999999876311 112 557888899999999999
Q ss_pred HHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHH
Q 004470 659 EAWFLHKEMVQK----GFN-LTTSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 659 ~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~ 694 (751)
+|...++++.+. +.. ....++..+...+...|+...
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999998763 111 123456666777766665543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.51 E-value=9.9e-10 Score=122.18 Aligned_cols=220 Identities=8% Similarity=-0.044 Sum_probs=129.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 450 AFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETAN-ELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDME 528 (751)
Q Consensus 450 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 528 (751)
+..+|++++..- +-+...|...+..+.+.|+.++|. ++|++.... ++.+...|...+...-+.|++++|.++|+.+.
T Consensus 328 v~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445566666543 236666776777667777777775 777777654 33455556666666677777777777777766
Q ss_pred HCCC---------CCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CC
Q 004470 529 VAGF---------HPD------------TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS-GM 586 (751)
Q Consensus 529 ~~~~---------~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~ 586 (751)
.... .|+ ..+|...+....+.|..+.|..+|.++.+.-.......|...+..-.+. ++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 4210 121 2345556666666677777777777776541111222332222222222 34
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 587 IEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP--DGNTYNILLQGHCKARNMKEAWFLH 664 (751)
Q Consensus 587 ~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~ 664 (751)
.+.|.++|+..++. ..-+...+...+......|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+.++.
T Consensus 486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 67777777777665 22344555566666666777777777777776643211 2345666666666777777777777
Q ss_pred HHHHHCCC
Q 004470 665 KEMVQKGF 672 (751)
Q Consensus 665 ~~~~~~~~ 672 (751)
+++.+.-+
T Consensus 565 ~R~~~~~P 572 (679)
T 4e6h_A 565 KRFFEKFP 572 (679)
T ss_dssp HHHHHHST
T ss_pred HHHHHhCC
Confidence 77776543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-12 Score=134.98 Aligned_cols=269 Identities=13% Similarity=0.101 Sum_probs=156.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHH
Q 004470 473 ADGLCKSGELETANELLHEMCRKGLQLN----IYTYNSIVNGLCKAGNILQAVKLMEDMEVA----GF-HPDTFTYTTIM 543 (751)
Q Consensus 473 i~~~~~~g~~~~A~~l~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li 543 (751)
...+...|++++|...++++.+.... + ...+..+...+...|++++|...+++.... +. +....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 33444444444444444444443211 2 133444444444555555555544443221 10 11133444555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHH
Q 004470 544 DAYCKSGEMVKAHELLRDMLDKGL-QPS----VVTFNVLMNGFCMSGM--------------------IEDGEKLLKWML 598 (751)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~~~ 598 (751)
..+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 555555666666555555442100 011 2245555556666666 666666665554
Q ss_pred Hc----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 599 EK----GLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGI-TPD----GNTYNILLQGHCKARNMKEAWFLHKEMV 668 (751)
Q Consensus 599 ~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 668 (751)
+. +..+ ...++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 1111 123566667777778888888888777664210 011 3367778888888999999999888877
Q ss_pred HCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 669 QKGFN-LT----TSSYNALIKGFLKRKKYLEARELFEEMRRGGL-VA----DREIYYFFVDINFEEGNTEITLELCDAAI 738 (751)
Q Consensus 669 ~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (751)
+.... .+ ..++..++..+...|++++|...++++++... .. ....+..++..+.+.|++++|.+.+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 53211 11 45777888899999999999999998876310 11 13567788899999999999999999998
Q ss_pred HcCC
Q 004470 739 ECYL 742 (751)
Q Consensus 739 ~~~~ 742 (751)
+...
T Consensus 331 ~~~~ 334 (338)
T 3ro2_A 331 EISR 334 (338)
T ss_dssp HC--
T ss_pred HHHH
Confidence 8653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.1e-13 Score=141.30 Aligned_cols=236 Identities=9% Similarity=0.010 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCCh----hhHHHHHHHHHhcCChhHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDP----HVFDIFFQVLVEARKLNEAR 205 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 205 (751)
..+..++..+...|++++|...+++++... |.++ .++..++.+|...|++++|.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 106 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG----------------------TEDLRTLSAIYSQLGNAYFYLGDYNKAM 106 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------CSCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----------------------ccChhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 445567888889999999999999988754 3333 46888999999999999999
Q ss_pred HHHHHHHhC----CCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcC-----CCcCHHHHHHHHHHHHhcCC-----
Q 004470 206 KLFEKLLNY----GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELG-----ICWNTASYNIMIHCLCRFGK----- 271 (751)
Q Consensus 206 ~~~~~~~~~----g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~----- 271 (751)
..|+++++. +..|........++.++...|++++|...|+++.+.. ......++..+...|...|+
T Consensus 107 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 186 (411)
T 4a1s_A 107 QYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQR 186 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccc
Confidence 999988753 2234444444555555556777888877777765441 11134466667777777777
Q ss_pred ------------HHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cccH
Q 004470 272 ------------IKEAHLLLLQMELR----GC-SPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLK-PN----PYTY 329 (751)
Q Consensus 272 ------------~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~ 329 (751)
+++|++.+++..+. +. .....++..+...+...|++++|.+.+++..+.... ++ ..++
T Consensus 187 ~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 266 (411)
T 4a1s_A 187 NPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRAN 266 (411)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 66676666654331 10 011234555556666666666666666655432100 01 1144
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004470 330 NSVVRLLCKTSKVVEAETILREMMNQGIV-----PDNVIYTTLIDGFCKMGNVAAAYRLFDEM 387 (751)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (751)
..+...+...|++++|...+++....... ....++..+...|...|++++|...+++.
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 267 SNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555555555555555544432100 00233444444444445555544444443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.4e-12 Score=116.35 Aligned_cols=166 Identities=16% Similarity=0.094 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004470 535 DTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIK 614 (751)
Q Consensus 535 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~ 614 (751)
+..+|..+...|.+.|++++|++.|++.++.. +.+..++..+...|.+.|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 34455555555555555555555555555442 23444555555555555555555555555544321 13333444444
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004470 615 QHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLE 694 (751)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 694 (751)
.+...++++.|.+.+++..+.. +.+...+..+...|.+.|++++|++.|+++++..+. +..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 4444455555555544444421 123444444444444445555555544444444332 34444444444444444444
Q ss_pred HHHHHHHHHH
Q 004470 695 ARELFEEMRR 704 (751)
Q Consensus 695 A~~~~~~~~~ 704 (751)
|++.|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444444
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.5e-11 Score=121.09 Aligned_cols=186 Identities=13% Similarity=0.107 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-Hh-hHHHHHHHHHHcCCHHHHHHHHH
Q 004470 553 VKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPN-AA-TYNPLIKQHCLRNDMRTTAKIYK 630 (751)
Q Consensus 553 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~ 630 (751)
++|..+|++.++.-.+.+...|..++..+.+.|++++|.++|+++++. .|+ .. .|..++..+.+.|++++|.++|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555555554211223445555555555555555555555555543 222 11 45555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CC
Q 004470 631 GMCAQGITPDGNTYNILLQGHC-KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG-LV 708 (751)
Q Consensus 631 ~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 708 (751)
++++.+ +++...|...+.... ..|++++|.++|+++++..+. ++..|..++..+.+.|++++|+.+|+++++.. ++
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 555432 122233322222211 145555555555555554332 45555555555555555555555555555532 23
Q ss_pred C--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 709 A--DREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 709 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
| ....|..++..+.+.|+.++|..+++++++...
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 2 234555555555555555555555555555443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-12 Score=133.88 Aligned_cols=232 Identities=12% Similarity=0.019 Sum_probs=170.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC----CCCHHHHH
Q 004470 507 IVNGLCKAGNILQAVKLMEDMEVA----GFHP-DTFTYTTIMDAYCKSGEMVKAHELLRDMLDK--GL----QPSVVTFN 575 (751)
Q Consensus 507 li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~----~p~~~~~~ 575 (751)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+. .. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667778888888888887653 1111 2456777888888888888888888877642 11 11235678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 004470 576 VLMNGFCMSGMIEDGEKLLKWMLEKGLK-PN----AATYNPLIKQHCLRNDMRTTAKIYKGMCAQ----GI-TPDGNTYN 645 (751)
Q Consensus 576 ~li~~~~~~g~~~~A~~l~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~ 645 (751)
.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888888999999999998888754111 11 246788888999999999999999988872 22 23466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 004470 646 ILLQGHCKARNMKEAWFLHKEMVQKG----FNLTTSSYNALIKGFLKRKK---YLEARELFEEMRRGGLVA-DREIYYFF 717 (751)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l 717 (751)
.+...|.+.|++++|...++++++.. -......+..+...+...|+ +++|+.++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 99999999999999999999987641 11122345678888888999 77787777765 2222 34567789
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcC
Q 004470 718 VDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 718 ~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
+..|.+.|++++|.+.++++++..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=133.80 Aligned_cols=278 Identities=9% Similarity=0.024 Sum_probs=145.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCC----hhhHHHHHHHHHhcCChhHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSD----PHVFDIFFQVLVEARKLNEAR 205 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 205 (751)
..+...+..+...|++++|...+++++... |.+ ..++..++.+|...|++++|.
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 63 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG----------------------TEDLKTLSAIYSQLGNAYFYLHDYAKAL 63 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------CSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC----------------------cccHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345566778888899999999888887653 222 246778888888999999999
Q ss_pred HHHHHHHhC----CCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC-cC----HHHHHHHHHHHHhcCC-----
Q 004470 206 KLFEKLLNY----GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC-WN----TASYNIMIHCLCRFGK----- 271 (751)
Q Consensus 206 ~~~~~~~~~----g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~----- 271 (751)
+.++++++. +..|........++.++...|++++|...++++.+.... ++ ..++..+...+...|+
T Consensus 64 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (338)
T 3ro2_A 64 EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 143 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccc
Confidence 888887643 212222223333344444556666666666555432110 01 2245555555555555
Q ss_pred ---------------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCcccHHHHHHH
Q 004470 272 ---------------IKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGL-KPNPYTYNSVVRL 335 (751)
Q Consensus 272 ---------------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~ 335 (751)
+++|...+++..... ...+. .....++..+...
T Consensus 144 ~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~ 192 (338)
T 3ro2_A 144 GPQDTGEFPEDVRNALQAAVDLYEENLSLV-------------------------------TALGDRAAQGRAFGNLGNT 192 (338)
T ss_dssp SCC----CCHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHH
Confidence 555555554432210 00000 0012234444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCC----C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHH
Q 004470 336 LCKTSKVVEAETILREMMNQG----I-VPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNII-PD----LLTYTAIICG 405 (751)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~g----~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~ 405 (751)
+...|++++|.+.+++..+.. . .....++..+...+...|++++|...+++..+.... ++ ..++..+...
T Consensus 193 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 193 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 272 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 444455555544444443210 0 001124455555555556666665555554322100 01 3345555566
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 004470 406 FCLTGKMVEAEKLFHEMLGR----GLEP-DEIVYTALIDGYCKAGGMKKAFSLHNNMVHM 460 (751)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 460 (751)
+...|++++|...+++.... +..+ ...++..+...|.+.|++++|...+++..+.
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 66666666666666655432 1000 1335556666666777777777777666653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-12 Score=139.34 Aligned_cols=212 Identities=13% Similarity=-0.015 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004470 517 ILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEM-VKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLK 595 (751)
Q Consensus 517 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 595 (751)
+++++..+++..... +.+...+..+...+...|++ ++|++.|++.++.. +.+...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444555444332 33555556666666666666 66666666665542 3345566666666666666666666666
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 004470 596 WMLEKGLKPNAATYNPLIKQHCLR---------NDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKA--------RNMK 658 (751)
Q Consensus 596 ~~~~~g~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~ 658 (751)
+.++. .|+...+..+...|... |++++|.+.++++++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66654 34455555666666666 66666777666666642 22456666666666666 6677
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 004470 659 EAWFLHKEMVQKGFN--LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELC 734 (751)
Q Consensus 659 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 734 (751)
+|+..|+++++..+. .+...|..++.+|...|++++|++.|+++++.. +.+...+..+..++...|++++|++.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777765431 266677777777777777777777777776653 445566666677777777777776544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-11 Score=112.83 Aligned_cols=168 Identities=13% Similarity=-0.011 Sum_probs=135.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 570 SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQ 649 (751)
Q Consensus 570 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 649 (751)
+...|..+...|...|++++|++.|++.++... -+..++..+...|...|++++|.+.++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 567788888888888888888888888887642 256778888888888888888888888887753 335667777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 004470 650 GHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEI 729 (751)
Q Consensus 650 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 729 (751)
.+...+++++|...++++.+..+. +...+..++..|.+.|++++|++.|+++++.. +.+...+..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 888888888888888888877554 67788888888888888888888888888864 5677888888888888888888
Q ss_pred HHHHHHHHHHcC
Q 004470 730 TLELCDAAIECY 741 (751)
Q Consensus 730 A~~~~~~~~~~~ 741 (751)
|++.++++++..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 888888888764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-11 Score=128.99 Aligned_cols=230 Identities=7% Similarity=-0.038 Sum_probs=165.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 004470 472 LADGLCKSGELETANELLHEMCRK----GLQL-NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAG--F----HPDTFTYT 540 (751)
Q Consensus 472 li~~~~~~g~~~~A~~l~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~~~~~ 540 (751)
....+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+.+..+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677788888888888887653 1111 23567777888888888888888888775421 0 11245677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHhhHH
Q 004470 541 TIMDAYCKSGEMVKAHELLRDMLDKGL-QPS----VVTFNVLMNGFCMSGMIEDGEKLLKWMLEK----GL-KPNAATYN 610 (751)
Q Consensus 541 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~----g~-~p~~~~~~ 610 (751)
.+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|...+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888888899999999998888764310 111 246788888899999999999999888762 22 22356788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 004470 611 PLIKQHCLRNDMRTTAKIYKGMCAQGI---TP-DGNTYNILLQGHCKARN---MKEAWFLHKEMVQKGFNL-TTSSYNAL 682 (751)
Q Consensus 611 ~l~~~~~~~g~~~~A~~~~~~m~~~g~---~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l 682 (751)
.+...|...|++++|.+.+++..+... .| ....+..+...+...|+ +++|+.++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 888889999999999999998876210 11 12335677888888888 77888877766 2222 34477789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004470 683 IKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 683 ~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
+..|.+.|++++|...++++.+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999876
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-12 Score=137.90 Aligned_cols=211 Identities=11% Similarity=-0.031 Sum_probs=122.3
Q ss_pred ChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhH
Q 004470 110 DYRLVLDFFDWACLRREPILEARCIVVQISVAAKDL-KTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVF 188 (751)
Q Consensus 110 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 188 (751)
..+.|+..++......+.+...+..++..+...|++ ++|...++++++.. |.++.++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----------------------p~~~~a~ 140 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----------------------PELVEAW 140 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----------------------TTCHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----------------------CCCHHHH
Confidence 345566666655555566666777777777777777 77777777766544 4556667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCC---------CCHHHHHHHHHhchhcCCCcCHHHH
Q 004470 189 DIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTC---------DGLRMVVKSFTEFPELGICWNTASY 259 (751)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~ 259 (751)
..|+.+|.+.|++++|.+.|+++++. .|+. .....++.++... |++++|++.|+++.+..+. +...|
T Consensus 141 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~-~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 216 (474)
T 4abn_A 141 NQLGEVYWKKGDVTSAHTCFSGALTH--CKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSW 216 (474)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTT--CCCH-HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCH-HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHH
Confidence 77777777777777777777777665 3553 3333344444455 6666666666666665443 55566
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 004470 260 NIMIHCLCRF--------GKIKEAHLLLLQMELRGCS--PDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTY 329 (751)
Q Consensus 260 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 329 (751)
..+..+|... |++++|+..|++..+.... -+...|..+...|...|++++|.+.|++..+.. +.+..++
T Consensus 217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~ 295 (474)
T 4abn_A 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQ 295 (474)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 6666666655 5566666666655543210 245555555555555555555555555555442 1133344
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 004470 330 NSVVRLLCKTSKVVEAET 347 (751)
Q Consensus 330 ~~li~~~~~~g~~~~A~~ 347 (751)
..+...+...|++++|.+
T Consensus 296 ~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 296 QREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.3e-11 Score=121.90 Aligned_cols=217 Identities=10% Similarity=0.006 Sum_probs=134.9
Q ss_pred HHHHHHHHhhhhCCCCChhHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHc-CCCCCchhhhHHHHHHHHH
Q 004470 112 RLVLDFFDWACLRREPILEARCIVVQISVA-------AKDL-------KTAHGLIHDFWA-KPNLDASIAFTHFVERLIY 176 (751)
Q Consensus 112 ~~al~~f~~~~~~~~~~~~~~~~~~~~l~~-------~~~~-------~~a~~~l~~~~~-~~~~~~~~~~~~~~~~l~~ 176 (751)
+.|+..|+.+....|.+...+...+..+.. .|++ ++|..+++++++ .+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~----------------- 95 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL----------------- 95 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-----------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-----------------
Confidence 578889999988889999999888888763 4776 889999999887 34
Q ss_pred hhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHH--hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCc
Q 004470 177 TYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVD--SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICW 254 (751)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~ 254 (751)
|.++.+|..++..+.+.|++++|..+|+++++. .|+.. .+..+...+ ...|++++|+++|+++.+..+.
T Consensus 96 -----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~p~- 166 (308)
T 2ond_A 96 -----KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFA-RRAEGIKSGRMIFKKAREDART- 166 (308)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHH-HHHHCHHHHHHHHHHHHTSTTC-
T ss_pred -----cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCC-
Confidence 566778888999999999999999999999875 45432 233333222 3456666666666666665432
Q ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CcccHH
Q 004470 255 NTASYNIMIHCLC-RFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKG-LKP--NPYTYN 330 (751)
Q Consensus 255 ~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~ 330 (751)
+...|...+.... ..|++++|..+|++..+... -+...|..++..+.+.|++++|..+|++..... ++| ....|.
T Consensus 167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~ 245 (308)
T 2ond_A 167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245 (308)
T ss_dssp CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3333333222211 24666666666665544321 244555555555555566666666666555542 222 233455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 331 SVVRLLCKTSKVVEAETILREMMNQ 355 (751)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~ 355 (751)
.++..+.+.|+.++|..+++++.+.
T Consensus 246 ~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 246 RFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555555555543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.4e-12 Score=127.94 Aligned_cols=241 Identities=17% Similarity=0.101 Sum_probs=174.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------C
Q 004470 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVA-------GFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDK------G 566 (751)
Q Consensus 500 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 566 (751)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999999999999999998773 22345677888999999999999999999998753 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---
Q 004470 567 -LQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEK------GLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ--- 635 (751)
Q Consensus 567 -~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--- 635 (751)
.+....++..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1234567888999999999999999999998865 2222 3456788888999999999999999998873
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 004470 636 ---GITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKG-------FNLT-------TSSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 636 ---g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~p~-------~~~~~~l~~~~~~~g~~~~A~~ 697 (751)
+..| ...++..+...|...|++++|...++++++.. ..+. ...+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2123 34568888999999999999999999998631 1111 1122223333445556666667
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 698 LFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.++...... +.+..++..++.+|.+.|++++|.++++++++..
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 777766532 4456788899999999999999999999998754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-10 Score=122.53 Aligned_cols=230 Identities=11% Similarity=-0.013 Sum_probs=163.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-C-CCHHHHH
Q 004470 507 IVNGLCKAGNILQAVKLMEDMEVAGF-HPD----TFTYTTIMDAYCKSGEMVKAHELLRDMLDK----GL-Q-PSVVTFN 575 (751)
Q Consensus 507 li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~-p~~~~~~ 575 (751)
....+...|++++|+..++++.+... .++ ..++..+...|...|++++|...+++..+. +- . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677888888888887765310 122 456777778888888888888888877642 10 1 1245677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 004470 576 VLMNGFCMSGMIEDGEKLLKWMLEK----GLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCA-----QGITPDGNTYN 645 (751)
Q Consensus 576 ~li~~~~~~g~~~~A~~l~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 645 (751)
.+...|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|.+.+++.++ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7888888888888888888887753 1111 134677788888899999999999988877 43 22367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC---C-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 004470 646 ILLQGHCKARNMKEAWFLHKEMVQKGFN---L-TTSSYNALIKGFLKRKK---YLEARELFEEMRRGGLVA-DREIYYFF 717 (751)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~~~~~~~~---p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l 717 (751)
.+...+.+.|++++|...++++.+.... + ....+..+...+...|+ +++|+..+++. +..+ ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 8899999999999999999998874211 1 23455666667777788 77787777762 2222 34566788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc
Q 004470 718 VDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 718 ~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
+..|.+.|++++|.+.++++++.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999998764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-10 Score=118.21 Aligned_cols=300 Identities=10% Similarity=0.028 Sum_probs=188.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHH
Q 004470 435 TALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVV----TYTALADGLCKSGELETANELLHEMCRKGL-QLNI----YTYN 505 (751)
Q Consensus 435 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~~~----~~~~ 505 (751)
......+...|++++|...+++........+.. ++..+...+...|++++|.+.+++...... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556677888888888888877654332322 456667777888888888888887765311 1122 2355
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHH
Q 004470 506 SIVNGLCKAGNILQAVKLMEDMEVA----GFH--P-DTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQ----PSVVTF 574 (751)
Q Consensus 506 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~ 574 (751)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6677778888888888888877542 211 2 2345566777788888888888888877653211 123566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hhHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHH
Q 004470 575 NVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA-ATYN-----PLIKQHCLRNDMRTTAKIYKGMCAQGITP---DGNTYN 645 (751)
Q Consensus 575 ~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~ 645 (751)
..+...+...|++++|...+++.......++. ..+. ..+..+...|+.++|...+++.......+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 77777788888888888888877654212111 1111 22334667888888888888776533211 123456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 646 ILLQGHCKARNMKEAWFLHKEMVQK----GFNLTT-SSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDI 720 (751)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (751)
.+...+...|++++|...++++... |..++. ..+..+..++...|++++|...++++.+.. +. ......
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~ 331 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISH 331 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHH
Confidence 6677778888888888888777653 211122 256666777778888888888888877632 10 112233
Q ss_pred HHhcCChhHHHHHHHHHHHcCC
Q 004470 721 NFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
+...| +....++++++....
T Consensus 332 ~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHcc--HHHHHHHHHHHhCCC
Confidence 44555 566667777666544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.5e-12 Score=129.08 Aligned_cols=180 Identities=14% Similarity=0.032 Sum_probs=127.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHH
Q 004470 126 EPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEAR 205 (751)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 205 (751)
|....++..++..+...|++++|..++++++... .... -...+..+.++..++.+|...|++++|.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------------~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~ 89 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDL------------EKTS--GHDHPDVATMLNILALVYRDQNKYKDAA 89 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------HHHc--CCCCHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 4455778888999999999999999999987631 0000 0011233467889999999999999999
Q ss_pred HHHHHHHhC------CCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc------CC-CcCHHHHHHHHHHHHhcCCH
Q 004470 206 KLFEKLLNY------GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL------GI-CWNTASYNIMIHCLCRFGKI 272 (751)
Q Consensus 206 ~~~~~~~~~------g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~ 272 (751)
..|+++++. +..|........++.++...|++++|...|+++.+. +. .....++..+...+.+.|++
T Consensus 90 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 169 (311)
T 3nf1_A 90 NLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY 169 (311)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 999999865 333554555555666666788888888888887654 21 22355677788888888888
Q ss_pred HHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 273 KEAHLLLLQMELR------GCSP-DVVSFSTIINGYCYLGELQRVLKLIEEMQI 319 (751)
Q Consensus 273 ~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 319 (751)
++|++.|+++... +..| ...++..+...|...|++++|.+.++++.+
T Consensus 170 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 170 EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888887653 1112 234667777778888888888888887765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-10 Score=119.06 Aligned_cols=230 Identities=7% Similarity=-0.060 Sum_probs=158.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C---C-CCHHHH
Q 004470 471 ALADGLCKSGELETANELLHEMCRKGL-QLN----IYTYNSIVNGLCKAGNILQAVKLMEDMEVAG--F---H-PDTFTY 539 (751)
Q Consensus 471 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~---~-~~~~~~ 539 (751)
.....+...|++++|...+++..+... .++ ..++..+...+...|+++.|...+++..+.. . . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677888888888877765311 112 3466777778888888888888887765421 0 1 124567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHhhH
Q 004470 540 TTIMDAYCKSGEMVKAHELLRDMLDK----GLQ-PSVVTFNVLMNGFCMSGMIEDGEKLLKWMLE-----KGLKPNAATY 609 (751)
Q Consensus 540 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-----~g~~p~~~~~ 609 (751)
+.+...|...|++++|.+.+++..+. +.+ ....++..+...|...|++++|...+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 77888888888888888888877642 111 1234677788888888999999888888876 32 2235667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHH
Q 004470 610 NPLIKQHCLRNDMRTTAKIYKGMCAQGI---TPD-GNTYNILLQGHCKARN---MKEAWFLHKEMVQKGFNL-TTSSYNA 681 (751)
Q Consensus 610 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~ 681 (751)
..+...|...|++++|.+.+++..+... .|. ...+..+...+...|+ +++|+..+++. +..| ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 7888888899999999999988877311 122 3446666667777777 77777777762 2222 2346678
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004470 682 LIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 682 l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
++..|...|++++|...|+++.+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999998875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-10 Score=107.83 Aligned_cols=166 Identities=10% Similarity=-0.060 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHC 652 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (751)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34455555556666666666666555432 2244555666666666666666666666666542 235666677777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 004470 653 KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLE 732 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (751)
..|++++|.+.++++.+..+. +...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777776433 66777777777888888888888888877754 4566777777888888888888888
Q ss_pred HHHHHHHcCC
Q 004470 733 LCDAAIECYL 742 (751)
Q Consensus 733 ~~~~~~~~~~ 742 (751)
.++++++...
T Consensus 166 ~~~~~~~~~~ 175 (186)
T 3as5_A 166 HFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHcCC
Confidence 8888776653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.4e-11 Score=132.89 Aligned_cols=167 Identities=13% Similarity=-0.018 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 570 SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQ 649 (751)
Q Consensus 570 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 649 (751)
+..+|+.|...|.+.|++++|++.|++.++... -+...|..+...|.+.|++++|++.|++.++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 345566666666666666666666666665421 134556666666666666666666666666632 124566666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 004470 650 GHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEI 729 (751)
Q Consensus 650 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 729 (751)
.|.+.|++++|++.|+++++..+. +...|..++.+|.+.|++++|++.|+++++.. +.+...+..++.+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 777777777777777777666544 56667777777777777777777777777653 4456666677777777777777
Q ss_pred HHHHHHHHHHc
Q 004470 730 TLELCDAAIEC 740 (751)
Q Consensus 730 A~~~~~~~~~~ 740 (751)
|.+.++++++.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777666553
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-09 Score=113.85 Aligned_cols=299 Identities=12% Similarity=0.021 Sum_probs=211.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCH----HHHH
Q 004470 400 TAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEI----VYTALIDGYCKAGGMKKAFSLHNNMVHMRLT-PNV----VTYT 470 (751)
Q Consensus 400 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~ 470 (751)
......+...|++++|...+++.+......+.. .+..+...+...|++++|...+++....... .+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344456778899999999999988764222332 5667778888999999999999988753211 122 3356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHH
Q 004470 471 ALADGLCKSGELETANELLHEMCRK----GLQ--L-NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFH----PDTFTY 539 (751)
Q Consensus 471 ~li~~~~~~g~~~~A~~l~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~ 539 (751)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 7788899999999999999988653 221 2 2346677888899999999999999998764311 124567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HhhHH
Q 004470 540 TTIMDAYCKSGEMVKAHELLRDMLDKGLQP-S-VVTFN----VLMNGFCMSGMIEDGEKLLKWMLEKGLKPN---AATYN 610 (751)
Q Consensus 540 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~----~li~~~~~~g~~~~A~~l~~~~~~~g~~p~---~~~~~ 610 (751)
..+...+...|++++|...+++.......+ . ..... ..+..+...|+.++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 788889999999999999999887531111 1 22111 233447789999999999988876432211 22466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 611 PLIKQHCLRNDMRTTAKIYKGMCAQ----GITPDG-NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 611 ~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
.+...+...|++++|.+.+++.... |..++. ..+..+...+...|+.++|...+++....... ...+..
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~~~~ 331 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGFISH 331 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccHHHH
Confidence 7788899999999999999988652 222222 35667788889999999999999999875211 112334
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 004470 686 FLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~ 706 (751)
+...| +....+++.+....
T Consensus 332 ~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHTT
T ss_pred HHHcc--HHHHHHHHHHHhCC
Confidence 45555 66777778777753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.9e-10 Score=110.03 Aligned_cols=199 Identities=11% Similarity=-0.056 Sum_probs=153.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHH
Q 004470 533 HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPL 612 (751)
Q Consensus 533 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l 612 (751)
+.|+..+......+...|++++|...|++.++...+++...+..+..++...|++++|++.+++..+.... +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 35668888888999999999999999999988754378888888899999999999999999999886322 56678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITPDG-------NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT---TSSYNAL 682 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 682 (751)
...|...|++++|.+.+++.++.. +.+. ..|..+...+...|++++|++.|+++++.+ |+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHH
Confidence 899999999999999999998853 2244 457788888889999999999999998763 33 4677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 683 IKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 683 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
+.+|...| ...++++...+ ..+...|... .....|.+++|++.++++++..+.
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC
Confidence 88876544 44456665543 3344444333 344557789999999999987654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9e-11 Score=132.22 Aligned_cols=168 Identities=8% Similarity=-0.010 Sum_probs=111.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHH
Q 004470 126 EPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEAR 205 (751)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 205 (751)
|.+.+++..++.++...|++++|...++++++.. |.++.++..|+.+|.+.|++++|+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~----------------------P~~~~a~~nLg~~l~~~g~~~eA~ 63 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF----------------------PEFAAAHSNLASVLQQQGKLQEAL 63 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4455667777777777777777777777766554 555666777777777777777777
Q ss_pred HHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004470 206 KLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELR 285 (751)
Q Consensus 206 ~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (751)
+.|+++++. .|+.......++.++...|++++|++.|+++++..+. +..+|+.+...|.+.|++++|++.|++..+.
T Consensus 64 ~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 64 MHYKEAIRI--SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777765 4555544444555555667777777777777766554 5666777777777777777777777776654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 286 GCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQI 319 (751)
Q Consensus 286 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 319 (751)
.. -+...|..+...+...|++++|.+.++++.+
T Consensus 141 ~P-~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 141 KP-DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CS-CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CC-CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 32 2456666677777777777776666666543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=8.3e-10 Score=102.35 Aligned_cols=165 Identities=16% Similarity=0.041 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 004470 537 FTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQH 616 (751)
Q Consensus 537 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~ 616 (751)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666667777777777777666543 3456667777777777777777777777776652 23556666777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 617 CLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR 696 (751)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 696 (751)
...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+..+. +...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777777643 345667777778888888888888888888776543 6777888888888888888888
Q ss_pred HHHHHHHHC
Q 004470 697 ELFEEMRRG 705 (751)
Q Consensus 697 ~~~~~~~~~ 705 (751)
..++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 888887763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=9.1e-11 Score=117.35 Aligned_cols=228 Identities=18% Similarity=0.076 Sum_probs=158.8
Q ss_pred HHcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 004470 512 CKAGNILQAVKLMEDMEV-------AGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDK------GL-QPSVVTFNVL 577 (751)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~p~~~~~~~l 577 (751)
...|++++|+..+++..+ ...+....++..+...|...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666666544 222334677888999999999999999999998754 11 2245678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc------CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 004470 578 MNGFCMSGMIEDGEKLLKWMLEK------GLKP-NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQ------GITP-DGNT 643 (751)
Q Consensus 578 i~~~~~~g~~~~A~~l~~~~~~~------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~ 643 (751)
...|...|++++|...++++.+. ...| ...++..+...|...|++++|.+.++++++. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998865 1112 3567888889999999999999999998874 1123 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCC
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQK-------GFNL-TTSSYNALIKGFLKRKKYL------EARELFEEMRRGGLVA 709 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~ 709 (751)
+..+...|...|++++|...++++++. ...+ ....+..+...+...+... ++...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998863 1111 2334444444444433322 22222222111 1122
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 710 DREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
....+..++..|.+.|++++|.++++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467788999999999999999999999874
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-09 Score=103.66 Aligned_cols=208 Identities=10% Similarity=-0.061 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004470 499 LNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLM 578 (751)
Q Consensus 499 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 578 (751)
.|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788889999999999999999999999987633788888889999999999999999999999874 44677899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 004470 579 NGFCMSGMIEDGEKLLKWMLEKGLKPNA-------ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD---GNTYNILL 648 (751)
Q Consensus 579 ~~~~~~g~~~~A~~l~~~~~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li 648 (751)
..|...|++++|...+++..+.... +. ..|..+...+...|++++|.+.|+++++. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999986322 34 45778888899999999999999999985 455 46677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 649 QGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVD 719 (751)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (751)
..|...| ...++++...+.. +...|.... ....+.+++|+..++++++.. |.+......+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~ 222 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 7776544 4455666555433 455554443 344677999999999999864 445555554443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.18 E-value=8.6e-09 Score=101.71 Aligned_cols=203 Identities=12% Similarity=0.092 Sum_probs=122.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 520 AVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGL-QPSVVTFNVLMNGFCMSGMIEDGEKLLKWML 598 (751)
Q Consensus 520 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 598 (751)
|+..+++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666655544 44555555666677777777777777777665542 1355566667777777777777777777776
Q ss_pred HcCCCC-----CHhhHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 599 EKGLKP-----NAATYNPLIKQ--HCLRN--DMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 599 ~~g~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
+. .| +..+...+..+ ....| +..+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 44 23444444444 33334 677777777777653 34433333444477778888888888776554
Q ss_pred CCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 670 KGF---------NLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 670 ~~~---------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
..+ +.++.++..++......|+ +|.++++++.+.. |.++.+. ++++....|++++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-P~hp~i~-----------d~~~k~~~Fd~~~~k 305 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-HEHAFIK-----------HHQEIDAKFDELVRK 305 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-CCCHHHH-----------HHHHHHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-CCChHHH-----------HHHHHHHHHHHHHHH
Confidence 310 2256666566656666676 7778888887753 3333332 345566666666666
Q ss_pred C
Q 004470 741 Y 741 (751)
Q Consensus 741 ~ 741 (751)
+
T Consensus 306 y 306 (310)
T 3mv2_B 306 Y 306 (310)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-10 Score=113.48 Aligned_cols=232 Identities=15% Similarity=0.050 Sum_probs=157.0
Q ss_pred cCChHHHHHHHHhhhhC--------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhh-
Q 004470 108 RSDYRLVLDFFDWACLR--------REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTY- 178 (751)
Q Consensus 108 ~~~~~~al~~f~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~- 178 (751)
.++++.|+..|+.+... .+....++..++.++...|++++|...+.+++... .. ..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------~~---~~~ 78 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIR------------EK---TLG 78 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HH---HTC
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH------------HH---HcC
Confidence 45666666666665442 23456788899999999999999999999987531 00 00
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc--
Q 004470 179 KDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNY------GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL-- 250 (751)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~-- 250 (751)
..-+..+.++..++.+|...|++++|.+.|.++++. ...|+.......++.++...|++++|...|+++.+.
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 011233467899999999999999999999999865 223555555566666767899999999999999776
Q ss_pred ----C-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCC-CHHHHHHHHHHHHhcCCH------HHHH
Q 004470 251 ----G-ICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELR-------GCSP-DVVSFSTIINGYCYLGEL------QRVL 311 (751)
Q Consensus 251 ----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p-~~~~~~~li~~~~~~g~~------~~A~ 311 (751)
+ .+....++..+...|.+.|++++|...|++..+. ...+ ....|..+...+...+.. ..+.
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG 238 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 1 1224678889999999999999999999998653 1112 222333333333333332 2222
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 312 KLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQ 355 (751)
Q Consensus 312 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (751)
..++.... ..+....++..+...|...|++++|...+++.++.
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 239 SWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ----CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22222111 11223567888999999999999999999988764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.2e-09 Score=106.21 Aligned_cols=107 Identities=7% Similarity=-0.040 Sum_probs=72.4
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCC---hhhHHHHHHHHHhcCCh
Q 004470 125 REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSD---PHVFDIFFQVLVEARKL 201 (751)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 201 (751)
.+.+...++..+..+...|++++|...+++++... |.+ +.++..++.+|.+.|++
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----------------------p~~~~~~~a~~~lg~~~~~~~~~ 68 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG----------------------RTHEWAADAQFYLARAYYQNKEY 68 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----------------------SCSTTHHHHHHHHHHHHHHTTCH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----------------------CCCcchHHHHHHHHHHHHHhCcH
Confidence 34556777777888888888888888888877654 333 56777788888888888
Q ss_pred hHHHHHHHHHHhCCC-ccCHHhHHHHHHHHHhC--------CCCHHHHHHHHHhchhcCCC
Q 004470 202 NEARKLFEKLLNYGL-VISVDSCNLFLSRLSNT--------CDGLRMVVKSFTEFPELGIC 253 (751)
Q Consensus 202 ~~A~~~~~~~~~~g~-~p~~~~~~~ll~~l~~~--------~~~~~~a~~~~~~~~~~~~~ 253 (751)
++|+..|+++++..+ .|........++.++.. .|++++|...|+++++..+.
T Consensus 69 ~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 69 LLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 888888888877632 22333333344444444 67777788877777776543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.10 E-value=5.8e-09 Score=90.66 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFL 687 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 687 (751)
.+..+...+...|++++|.++++++.+.+ +.+...+..++..+...|++++|...++++.+.++. +...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 34556666777777777777777776643 235666777777777788888888888887776543 5667777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 688 KRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
..|++++|.+.++++.+.. +.+...+..++..+.+.|++++|.+.++++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888887753 4566777778888888888888888888887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-08 Score=96.56 Aligned_cols=176 Identities=12% Similarity=0.060 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC----CHHHHHHHH
Q 004470 554 KAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRN----DMRTTAKIY 629 (751)
Q Consensus 554 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 629 (751)
+|.+.|++..+.| +...+..|...|...+++++|...|++..+.| +...+..|...|.. + +.++|.++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 55555556666666666666666666665543 44445555555544 4 666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 004470 630 KGMCAQGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFN-LTTSSYNALIKGFLK----RKKYLEARELFE 700 (751)
Q Consensus 630 ~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 700 (751)
++..+.| +...+..|...|.. .+++++|++.|++..+.|.. .++..+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6666543 45555566666655 56677777777776665421 015566666666666 566777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHHcC
Q 004470 701 EMRRGGLVADREIYYFFVDINFEE-G-----NTEITLELCDAAIECY 741 (751)
Q Consensus 701 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 741 (751)
++.+. +.+...+..++..|... | +.++|+++++++.+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77664 23344555666666543 2 6777777777776665
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.06 E-value=9.5e-08 Score=94.26 Aligned_cols=182 Identities=8% Similarity=-0.004 Sum_probs=111.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 485 ANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGF-HPDTFTYTTIMDAYCKSGEMVKAHELLRDML 563 (751)
Q Consensus 485 A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 563 (751)
|+..++++.+.+ .++..++..+...+...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666554 34555555666777777777777777777665541 1345666667777777777777777777776
Q ss_pred hCCCCC-----CHHHHHHHHHHH--HhcC--ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 564 DKGLQP-----SVVTFNVLMNGF--CMSG--MIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 564 ~~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
+. .| +..+...|+.++ ...| +.++|..+|+++.+. .|+..+-..++.++...|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 44 244455555552 2233 777777777777654 34433333444467777777777777776554
Q ss_pred CC-----C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 635 QG-----I----TPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 635 ~g-----~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
.. . +.|+.++..+|......|+ +|.++++++.+..+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 20 0 2245566555555555665 777777777776443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-07 Score=98.06 Aligned_cols=124 Identities=11% Similarity=0.112 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK-ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
.|...+....+.++.+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|+.+++..+. ++..+...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 3444555555566677777777776 21 11233333322222222 23577777777777765322 445555666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 687 LKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
.+.|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++++
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777777777777751 2455566666555566777777777777665
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-09 Score=107.38 Aligned_cols=169 Identities=11% Similarity=0.003 Sum_probs=124.2
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHH
Q 004470 125 REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEA 204 (751)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 204 (751)
.|.+...+..++..+...|++++|...++++++.. |.++.++..|+.+|.+.|++++|
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------P~~~~a~~~la~~~~~~g~~~~A 170 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS----------------------NQNGEIGLLLAETLIALNRSEDA 170 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------------------TSCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC----------------------CcchhHHHHHHHHHHHCCCHHHH
Confidence 45566777788888888888888888888887665 67777888888888888888888
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004470 205 RKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 205 ~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (751)
...++++... .|+...............++.+.|...|+++.+..|. +...+..+...|...|++++|+..|+++.+
T Consensus 171 ~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 171 EAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCchh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 8888888766 4555544444443333456667778888888777655 777788888888888888888888888776
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 285 RGCSP-DVVSFSTIINGYCYLGELQRVLKLIEEMQ 318 (751)
Q Consensus 285 ~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 318 (751)
..... +...+..++..+...|+.++|...+++..
T Consensus 248 ~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 248 XDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 54221 25567777777777888777777776654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-09 Score=107.46 Aligned_cols=92 Identities=11% Similarity=-0.070 Sum_probs=43.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 004470 508 VNGLCKAGNILQAVKLMEDMEVA----GFHPD-TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQ-PS----VVTFNVL 577 (751)
Q Consensus 508 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 577 (751)
...|...|++++|...+.+..+. |-+++ ..+|+.+...|.+.|++++|+..+++.++.... .+ ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555666666666666655432 11111 345555555666666666666665555432100 01 2234444
Q ss_pred HHHHHhc-CChhHHHHHHHHHHH
Q 004470 578 MNGFCMS-GMIEDGEKLLKWMLE 599 (751)
Q Consensus 578 i~~~~~~-g~~~~A~~l~~~~~~ 599 (751)
...|... |++++|+..+++.++
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHH
Confidence 4444443 444444444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-09 Score=100.19 Aligned_cols=163 Identities=13% Similarity=0.021 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFE 209 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 209 (751)
......+..+...|++++|...++++++.. |.++.++..++.+|.+.|++++|+..|+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------P~~~~a~~~la~~~~~~g~~~~A~~~~~ 64 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL----------------------QSRGDVKLAKADCLLETKQFELAQELLA 64 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH----------------------HTSHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445566667777777777777777765433 5566677777777777777777777777
Q ss_pred HHHhCCCccCHHhHHHHHHHHH-hCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004470 210 KLLNYGLVISVDSCNLFLSRLS-NTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCS 288 (751)
Q Consensus 210 ~~~~~g~~p~~~~~~~ll~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (751)
++++. .|+.. +..+++.+. ...++...|...|+++.+..|. +...+..+...+.+.|++++|+..|+++.+....
T Consensus 65 ~a~~~--~p~~~-~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 65 TIPLE--YQDNS-YKSLIAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp TCCGG--GCCHH-HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred Hhhhc--cCChH-HHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 77655 33222 222222221 0111222356666666665444 5666666666666667777776666666654432
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 289 P-DVVSFSTIINGYCYLGELQRVLKLIEEMQ 318 (751)
Q Consensus 289 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 318 (751)
+ +...+..+...+...|+.++|...|++..
T Consensus 141 ~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 141 AQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 2 24456666666666666666666666543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.6e-09 Score=100.55 Aligned_cols=182 Identities=8% Similarity=-0.010 Sum_probs=104.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 004470 128 ILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKL 207 (751)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 207 (751)
+.......+..+...|++++|...+.++++.. +..+...+... .-......+.....++.+|.+.|++++|+..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN---IDRTEMYYWTN---VDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---HHHHHHHHHHH---SCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHhh---hcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34566777888889999999999999998764 11100000000 0000000112223378888888888888888
Q ss_pred HHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhc
Q 004470 208 FEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGK--IKEAHLLLLQMELR 285 (751)
Q Consensus 208 ~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~ 285 (751)
|+++++. .|+.......++.++...|++++|...|+++++..|. +..+|..+...|...|+ .+++...++....
T Consensus 77 ~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~- 152 (208)
T 3urz_A 77 YKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS- 152 (208)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-
Confidence 8888776 5655555555555555667777777777777776554 66677777766655543 3344444444432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 286 GCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIK 320 (751)
Q Consensus 286 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 320 (751)
..|....+.....++...|++++|+..|++..+.
T Consensus 153 -~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 153 -PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred -CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1122222333444455566666666666666654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-08 Score=97.42 Aligned_cols=191 Identities=9% Similarity=-0.041 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
..+...+..+.+.|++++|+..|+++++. .|+........+ .... .......++.+...
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~----~~~~---------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTN----VDKN---------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHH----SCTT---------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhh----hcch---------------hhhhHHHHHHHHHH
Confidence 34556777889999999999999999987 566543332210 0000 00112233446666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC--HH
Q 004470 266 LCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSK--VV 343 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~ 343 (751)
|.+.|++++|+..|++..+... -+...|..+...+...|++++|++.|++..+.. +.+..++..+...|...|+ .+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence 6777777777777777665432 356666667777777777777777777776653 2245566666666655443 23
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004470 344 EAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAII 403 (751)
Q Consensus 344 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 403 (751)
.+...++.... ..|....+..+..++...|++++|...|++..+. .|+......+.
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 34444444432 1222233344455556667777777777777664 35544444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-08 Score=100.49 Aligned_cols=189 Identities=10% Similarity=0.055 Sum_probs=109.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC-Hh
Q 004470 533 HPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPS---VVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL-KPN-AA 607 (751)
Q Consensus 533 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~-~p~-~~ 607 (751)
+.+...+..+...+.+.|++++|...|+++++.. +.+ ...+..+..+|.+.|++++|...|+++++... .|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456667777777888888888888888887753 223 56777777888888888888888888877532 112 34
Q ss_pred hHHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 608 TYNPLIKQHCL--------RNDMRTTAKIYKGMCAQGITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSS 678 (751)
Q Consensus 608 ~~~~l~~~~~~--------~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 678 (751)
.+..+..++.. .|++++|.+.|+++++.. |+ ......+.. +...... -...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~----~~~~ 150 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH----HHHH
Confidence 55566666767 778888888888777642 32 222211100 0000000 0011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHcCC
Q 004470 679 YNALIKGFLKRKKYLEARELFEEMRRGGLV-A-DREIYYFFVDINFEE----------GNTEITLELCDAAIECYL 742 (751)
Q Consensus 679 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 742 (751)
+..++..|.+.|++++|+..|+++++.... + ....+..++.+|... |++++|++.++++++..+
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 344555555666666666666665553210 0 234455555555544 555666666666655543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.00 E-value=9.5e-07 Score=95.34 Aligned_cols=125 Identities=8% Similarity=-0.014 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004470 537 FTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM-SGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQ 615 (751)
Q Consensus 537 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~ 615 (751)
..|...+....+.+..+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|+...+.. .-+...+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 44555556555667777788887777 22 12233344322222222 235778888888777653 1133445556666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
....|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667788888888887762 2456677777666677888888887777764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-08 Score=101.32 Aligned_cols=165 Identities=12% Similarity=0.013 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----
Q 004470 257 ASYNIMIHCLCRFGKIKEAHLLLLQMELR----GCSP-DVVSFSTIINGYCYL-GELQRVLKLIEEMQIKGLKP-N---- 325 (751)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~---- 325 (751)
.+|+.+...|.+.|++++|+..|++.... |-.. -..+|+.+...|... |++++|++.|++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34555555666666666666665554331 1000 023555666666664 66666666666665431100 0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---
Q 004470 326 PYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDN------VIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDL--- 396 (751)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--- 396 (751)
..++..+...+.+.|++++|...|++..+....... ..|..+..++...|++++|...|++..+.. |+.
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCc
Confidence 234666666666777777777777666664322111 145556666666777777777776665532 221
Q ss_pred ---HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 004470 397 ---LTYTAIICGFC--LTGKMVEAEKLFHEML 423 (751)
Q Consensus 397 ---~~~~~li~~~~--~~g~~~~A~~~~~~m~ 423 (751)
..+..++..+. ..+++++|+..|+.+.
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 12333444443 3456777777666554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.98 E-value=5.9e-08 Score=93.37 Aligned_cols=192 Identities=7% Similarity=-0.033 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--hhHH
Q 004470 535 DTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQ-P-SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA--ATYN 610 (751)
Q Consensus 535 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~--~~~~ 610 (751)
+...+..+...+.+.|++++|...|+++++.... | ....+..+..+|.+.|++++|+..|+++++....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666677788889999999999988875321 1 1356777888888899999999999988876322111 1344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------------
Q 004470 611 PLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTS------------- 677 (751)
Q Consensus 611 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------------- 677 (751)
.+..++...|.. .+ ..|..+...+...|++++|+..|+++++..+. +..
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHH
Confidence 444444432100 00 00111112222334444555555444443222 111
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004470 678 ----SYNALIKGFLKRKKYLEARELFEEMRRGGLVADR---EIYYFFVDINFEEGNTEITLELCDAAIECYLVGK 745 (751)
Q Consensus 678 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (751)
....++..|.+.|++++|+..|+++++.. |.++ ..+..++.++.+.|++++|++.++.+...+....
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 12356778899999999999999999853 2233 5688899999999999999999999988766543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-09 Score=122.28 Aligned_cols=151 Identities=10% Similarity=-0.018 Sum_probs=83.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNI 261 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (751)
|.++.++..++.+|.+.|++++|+..|+++++. .|+.......++.++...|++++|.+.|+++.+..+. +...|..
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~ 506 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLA 506 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHH
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 344455556666666666666666666666554 4444434444444444456666666666666655443 4555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 004470 262 MIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK 338 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 338 (751)
+..+|.+.|++++ ++.|++..+.+. .+...|..+...+.+.|++++|++.|++..+.+ +-+...+..+..++..
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC-
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHc
Confidence 6666666666666 666666555432 245556666666666666666666666655442 1123445555555444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.7e-09 Score=118.86 Aligned_cols=166 Identities=9% Similarity=-0.077 Sum_probs=131.7
Q ss_pred ccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004470 217 VISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFST 296 (751)
Q Consensus 217 ~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 296 (751)
.|+.......++..+...|++++|.+.|+++.+.++. +...|..+..+|.+.|++++|+..|++..+... -+...|..
T Consensus 429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~ 506 (681)
T 2pzi_A 429 FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP-GELAPKLA 506 (681)
T ss_dssp CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHH
T ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHH
Confidence 4555544555555555789999999999999988665 788999999999999999999999999887643 36778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 004470 297 IINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPD-NVIYTTLIDGFCKMG 375 (751)
Q Consensus 297 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 375 (751)
+...+.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.+.|++..+. .|+ ..++..+...+...|
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 9999999999999 99999998874 336788999999999999999999999998876 344 567777888776655
Q ss_pred C--------HHHHHHHHHHHH
Q 004470 376 N--------VAAAYRLFDEMR 388 (751)
Q Consensus 376 ~--------~~~A~~~~~~m~ 388 (751)
+ +++|.+.+..+.
T Consensus 583 ~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 583 STSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp ----CCHHHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHhhCC
Confidence 4 556666655543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-09 Score=97.02 Aligned_cols=116 Identities=13% Similarity=0.016 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
..+..|+.+|.+.|++++|++.|+++++. .|+.......++.++...|++++|...|+++++..+. +..+|..+...
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 108 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAEL 108 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34444455555555555555555555444 3444433344444444445555555555555444333 44455555555
Q ss_pred HHhcCCHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 004470 266 LCRFGKIKEAHLL-LLQMELRGCSPDVVSFSTIINGYCYLG 305 (751)
Q Consensus 266 ~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g 305 (751)
|.+.|++++|.+. +++..+..+ -+...|......+...|
T Consensus 109 ~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 109 LCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 5555555444433 344443321 23444444444444444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4.8e-08 Score=84.73 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHC 652 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (751)
.|..+...+...|++++|..+++++.+... .+...+..+...+...|++++|.+.++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 345556666666777777777766665432 245556666666677777777777777776643 235666677777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 653 KARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
..|++++|.+.++++.+..+. +...+..++..+.+.|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 778888888888777776433 5667777778888888888888888877764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-07 Score=93.35 Aligned_cols=217 Identities=12% Similarity=0.082 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc---CCHH
Q 004470 483 ETANELLHEMCRKGLQLNIYTYNSIVNGLCKAG--NILQAVKLMEDMEVAGFHPDTFTYTTIMDAY----CKS---GEMV 553 (751)
Q Consensus 483 ~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~ 553 (751)
++|+++++.++..++. +...|+.--..+...| +++++++.++.+...+ +-+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4666666666665433 4445555555555555 6666666666665543 33444444333333 333 4555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCC------HHHH
Q 004470 554 KAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIE--DGEKLLKWMLEKGLKPNAATYNPLIKQHCLRND------MRTT 625 (751)
Q Consensus 554 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~------~~~A 625 (751)
+++++++.+.+.. +.+..+|+.-...+.+.|.++ ++++.++++++.... |...|+.-...+...++ ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 6666666555543 335555555555555555555 555555555554322 44444444434433333 4445
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004470 626 AKIYKGMCAQGITPDGNTYNILLQGHCKARNMKE-AWFLHKEMVQKG--FNLTTSSYNALIKGFLKRKKYLEARELFEEM 702 (751)
Q Consensus 626 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 702 (751)
++.+++++... +-|...|+.+...+.+.|+..+ +..+.+++.+.+ -..++..+..++.+|.+.|+.++|+++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 55555444432 1234444444444444444222 223333333221 0113444444555555555555555555554
Q ss_pred HH
Q 004470 703 RR 704 (751)
Q Consensus 703 ~~ 704 (751)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-08 Score=100.81 Aligned_cols=167 Identities=11% Similarity=-0.043 Sum_probs=126.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-H
Q 004470 568 QPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYN-I 646 (751)
Q Consensus 568 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ 646 (751)
+.+...+..+...+...|++++|...++++.+... -+...+..+...+...|++++|.+.++++... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 44556666777777888888888888888877632 25567777888888888888888888887764 35544322 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 004470 647 LLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD--REIYYFFVDINFEE 724 (751)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 724 (751)
....+...++.++|+..++++++..+. +...+..++..|...|++++|+..++++++.. +.+ ...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHc
Confidence 233466777888888889988887655 78888899999999999999999999998864 222 67788888899999
Q ss_pred CChhHHHHHHHHHHH
Q 004470 725 GNTEITLELCDAAIE 739 (751)
Q Consensus 725 g~~~~A~~~~~~~~~ 739 (751)
|+.++|...+++.+.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999998888765
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-08 Score=93.06 Aligned_cols=163 Identities=10% Similarity=0.031 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
..+..++..+.+.|++++|...|+++++. .|+.......++.++...|++++|...|+++....+ +...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~ 82 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKL 82 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHH
Confidence 45667788888888888888888888776 677666666666666677888888888888877654 44333332222
Q ss_pred -HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhcCCHH
Q 004470 266 -LCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKP-NPYTYNSVVRLLCKTSKVV 343 (751)
Q Consensus 266 -~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 343 (751)
+.+.+...+|+..|++..+... .+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 1222333345666666655432 245666666666677777777777777666653221 2345666666666666666
Q ss_pred HHHHHHHHHH
Q 004470 344 EAETILREMM 353 (751)
Q Consensus 344 ~A~~~~~~m~ 353 (751)
+|...|++.+
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666666544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.3e-07 Score=89.92 Aligned_cols=223 Identities=10% Similarity=-0.003 Sum_probs=156.7
Q ss_pred hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCC--CHHHHHHHHHhchhcCCCcCHHHHHHHHHHH----Hhc-
Q 004470 197 EARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCD--GLRMVVKSFTEFPELGICWNTASYNIMIHCL----CRF- 269 (751)
Q Consensus 197 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~- 269 (751)
+....++|++++++++.. .|+..+.=..-+.+....| +++++++.++.++...+. +..+|+.-...+ .+.
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 334456899999999887 5766654333444444566 889999999998888766 666677655555 455
Q ss_pred --CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC----
Q 004470 270 --GKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQ--RVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSK---- 341 (751)
Q Consensus 270 --g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---- 341 (751)
+++++++++++.+.+... -|-.+|+.-...+.+.|+++ ++++.++++.+.... |..+|+.....+.+.|+
T Consensus 122 ~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 788889998888887653 57788887777777788887 888888888877543 66677766666666665
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 342 --VVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAA-AYRLFDEMRGLN--IIPDLLTYTAIICGFCLTGKMVEAE 416 (751)
Q Consensus 342 --~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~ 416 (751)
++++++.++.++... +-|..+|+.+-..+.+.|+..+ +..+.+++.+.+ -..+...+..+...+.+.|+.++|+
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 777888887777764 4577788887777777777444 444555554432 1226667777777777777778888
Q ss_pred HHHHHHHHC
Q 004470 417 KLFHEMLGR 425 (751)
Q Consensus 417 ~~~~~m~~~ 425 (751)
++++.+.+.
T Consensus 279 ~~~~~l~~~ 287 (306)
T 3dra_A 279 TVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 877777653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-07 Score=89.95 Aligned_cols=176 Identities=13% Similarity=0.004 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 004470 519 QAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSG----MIEDGEKLL 594 (751)
Q Consensus 519 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~l~ 594 (751)
+|++.|++..+. -++..+..+...|...+++++|.+.|++..+.| +...+..|...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 455666666654 355666666777777777777777777777654 55666666666666 5 777777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 004470 595 KWMLEKGLKPNAATYNPLIKQHCL----RNDMRTTAKIYKGMCAQGIT-PDGNTYNILLQGHCK----ARNMKEAWFLHK 665 (751)
Q Consensus 595 ~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~ 665 (751)
++..+.| +...+..|...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 55566666666665 67888888888888775421 016677777788877 778888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 004470 666 EMVQKGFNLTTSSYNALIKGFLKR-K-----KYLEARELFEEMRRGG 706 (751)
Q Consensus 666 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 706 (751)
+..+.+ .++..+..|...|... | ++++|..+|+++.+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 888761 2455677777777653 3 7888888888888876
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=4.6e-09 Score=93.80 Aligned_cols=146 Identities=8% Similarity=-0.070 Sum_probs=120.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcC
Q 004470 191 FFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFG 270 (751)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 270 (751)
|+.++...|++++|+..+.+.... .|+.......++.++...|++++|++.|+++++..+. +..+|..+..+|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 566777889999999999999876 6777666677888887899999999999999999776 8999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 004470 271 KIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKL-IEEMQIKGLKPNPYTYNSVVRLLCKTSK 341 (751)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g~ 341 (751)
++++|+..|++..+... -+..+|..+...|.+.|++++|.+. +++..+.. +-++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999999887643 3678899999999999999877665 58887763 3367778888888877775
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.6e-08 Score=109.57 Aligned_cols=164 Identities=12% Similarity=-0.012 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 004470 549 SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKI 628 (751)
Q Consensus 549 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 628 (751)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988763 45688899999999999999999999999988632 3577888899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 004470 629 YKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKR---KKYLEARELFEEMRRG 705 (751)
Q Consensus 629 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 705 (751)
+++.++.. +.+...+..+...|.+.|++++|.+.++++.+..+. +...+..++..+... |++++|.+.++++++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998853 336788889999999999999999999999987654 778889999999999 9999999999999886
Q ss_pred CCCCCHHHHHHH
Q 004470 706 GLVADREIYYFF 717 (751)
Q Consensus 706 ~~~~~~~~~~~l 717 (751)
+ +.+...+..+
T Consensus 158 ~-p~~~~~~~~l 168 (568)
T 2vsy_A 158 G-VGAVEPFAFL 168 (568)
T ss_dssp T-CCCSCHHHHT
T ss_pred C-CcccChHHHh
Confidence 5 3333344433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6.7e-08 Score=92.97 Aligned_cols=186 Identities=9% Similarity=-0.004 Sum_probs=119.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 129 LEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
...++.++..+...|++++|...+++++.... ..+..+.++..++.+|.+.|++++|+..|
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-------------------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~ 64 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-------------------FGPYSQQVQLDLIYAYYKNADLPLAQAAI 64 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------------------TSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45677788889999999999999999886530 11222457888999999999999999999
Q ss_pred HHHHhCCCccCHHh---HHHHHHHHHh------------------CCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHH
Q 004470 209 EKLLNYGLVISVDS---CNLFLSRLSN------------------TCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267 (751)
Q Consensus 209 ~~~~~~g~~p~~~~---~~~ll~~l~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (751)
+++++. .|+... ....++.... ..|++++|...|+++++..|. +..++......-
T Consensus 65 ~~~l~~--~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~- 140 (225)
T 2yhc_A 65 DRFIRL--NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV- 140 (225)
T ss_dssp HHHHHH--CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH-
T ss_pred HHHHHH--CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH-
Confidence 999987 344321 2222332221 246677777777777766443 222222111100
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHH
Q 004470 268 RFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNP----YTYNSVVRLLCKTSKVV 343 (751)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~ 343 (751)
.+...+. .....+...|.+.|++++|+..|+++.+.. |+. ..+..+..++.+.|+.+
T Consensus 141 ---------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 141 ---------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp ---------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcH
Confidence 0000000 111345567778888888888888887762 332 45777788888888888
Q ss_pred HHHHHHHHHHHCC
Q 004470 344 EAETILREMMNQG 356 (751)
Q Consensus 344 ~A~~~~~~m~~~g 356 (751)
+|.+.++.+...+
T Consensus 202 ~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 202 QAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhC
Confidence 8888888777763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=5.7e-07 Score=90.39 Aligned_cols=165 Identities=12% Similarity=-0.023 Sum_probs=117.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC-CCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 004470 577 LMNGFCMSGMIEDGEKLLKWMLEKGL-KPNA----ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGIT-PD----GNTYNI 646 (751)
Q Consensus 577 li~~~~~~g~~~~A~~l~~~~~~~g~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 646 (751)
.+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|++.++++++.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777888888888888776421 2221 12334556666777888888888888873222 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 004470 647 LLQGHCKARNMKEAWFLHKEMVQK-----GFNL-TTSSYNALIKGFLKRKKYLEARELFEEMRRG----GLVAD-REIYY 715 (751)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 715 (751)
+...|...|++++|+..++++++. +..+ ...++..++..|.+.|++++|+..++++++. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888899999999999999888841 1111 2347788899999999999999999988762 22222 57788
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHHcC
Q 004470 716 FFVDINFEEGN-TEITLELCDAAIECY 741 (751)
Q Consensus 716 ~l~~~~~~~g~-~~~A~~~~~~~~~~~ 741 (751)
.++.++.+.|+ +++|.+.++++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 88999999995 699999999987643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.7e-08 Score=108.67 Aligned_cols=154 Identities=12% Similarity=0.029 Sum_probs=101.1
Q ss_pred cCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhh
Q 004470 108 RSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHV 187 (751)
Q Consensus 108 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (751)
.++++.|+..|+.+....|.+..++..++.++...|++++|...++++++.. |.++.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~~ 59 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH----------------------PGHPEA 59 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS----------------------TTCHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCCHHH
Confidence 3567778888888877777778888888888888888888888888887765 566677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (751)
+..++.+|...|++++|.+.|+++++. .|+.......++.++...|++++|.+.|+++.+..+. +..++..+...+.
T Consensus 60 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 136 (568)
T 2vsy_A 60 VARLGRVRWTQQRHAEAAVLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRR 136 (568)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 788888888888888888888888776 4555444445555555678888888888887777554 5677777777777
Q ss_pred hc---CCHHHHHHHHHHHHhcC
Q 004470 268 RF---GKIKEAHLLLLQMELRG 286 (751)
Q Consensus 268 ~~---g~~~~A~~~~~~m~~~g 286 (751)
+. |++++|.+.+++..+.+
T Consensus 137 ~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 137 RLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HTTCCTTHHHHHHHHHHHHHHT
T ss_pred HhhccccHHHHHHHHHHHHhcC
Confidence 77 78888888877776654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.6e-08 Score=99.22 Aligned_cols=130 Identities=12% Similarity=-0.018 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---C--CHH
Q 004470 573 TFNVLMNGFCMSGMIEDGEKLLKWMLEKGL---KPN--AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGIT---P--DGN 642 (751)
Q Consensus 573 ~~~~li~~~~~~g~~~~A~~l~~~~~~~g~---~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~---p--~~~ 642 (751)
+|+.+...|...|++++|+..+++.++... .+. ..++..+...|.. |++++|++.|++.++.... + ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 444455555555555555555555443200 011 2344455555555 6666666666555541100 0 033
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 643 TYNILLQGHCKARNMKEAWFLHKEMVQKG----FNLT-TSSYNALIKGFLKRKKYLEARELFEEMR 703 (751)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 703 (751)
++..+...|.+.|++++|+..|+++++.. ..+. ...+..++.++...|++++|...|++.+
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45555666666666666666666655421 1111 1244455555555566666666666665
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-07 Score=89.46 Aligned_cols=124 Identities=8% Similarity=-0.095 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004470 575 NVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKA 654 (751)
Q Consensus 575 ~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 654 (751)
..+...+...|++++|...+++.. .|+...+..+...|...|++++|.+.+++.++.. +.+...+..+...|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 334444445555555555554432 3344445555555555555555555555554432 22344444455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 655 RNMKEAWFLHKEMVQKGFNLTT----------------SSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 655 g~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
|++++|+..++++++..+. +. ..+..++.+|.+.|++++|.+.++++++
T Consensus 85 ~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555555555543322 11 3444444455555555555555555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.78 E-value=9.1e-08 Score=84.98 Aligned_cols=98 Identities=10% Similarity=0.057 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 642 NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDIN 721 (751)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (751)
..+..+...+.+.|++++|+..|+++++..+. ++..|..++.+|...|++++|+..|+++++.. |.++..|..++.+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 34555555556666666666666666655443 55566666666666666666666666666543 33455555666666
Q ss_pred HhcCChhHHHHHHHHHHHcC
Q 004470 722 FEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~ 741 (751)
.+.|++++|++.|+++++..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 66666666666666665554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.6e-08 Score=99.20 Aligned_cols=200 Identities=11% Similarity=-0.013 Sum_probs=138.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 004470 514 AGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCK-SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEK 592 (751)
Q Consensus 514 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 592 (751)
.|++++|.+++++..+.. +.. +.+ .+++++|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 355666666666655431 111 111 35666666666554 335566777777777
Q ss_pred HHHHHHHcCC---CC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 004470 593 LLKWMLEKGL---KP--NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG--I-TPD--GNTYNILLQGHCKARNMKEAWF 662 (751)
Q Consensus 593 l~~~~~~~g~---~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~-~p~--~~~~~~li~~~~~~g~~~~A~~ 662 (751)
.+.+..+... .+ -..+|+.+...|...|++++|++.|++.++.- . .+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7776654311 11 13467788888999999999999999887621 1 121 4567888888988 99999999
Q ss_pred HHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 004470 663 LHKEMVQKGFNL-----TTSSYNALIKGFLKRKKYLEARELFEEMRRG----GLVAD-REIYYFFVDINFEEGNTEITLE 732 (751)
Q Consensus 663 ~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 732 (751)
.|+++++..... ...++..++..|.+.|++++|+..|+++++. +..+. ...+..++.++...|++++|++
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999988742111 1467889999999999999999999999873 11111 2356677778888999999999
Q ss_pred HHHHHHHcC
Q 004470 733 LCDAAIECY 741 (751)
Q Consensus 733 ~~~~~~~~~ 741 (751)
.+++++ ..
T Consensus 217 ~~~~al-~~ 224 (307)
T 2ifu_A 217 CVRESY-SI 224 (307)
T ss_dssp HHHHHT-TS
T ss_pred HHHHHh-CC
Confidence 999998 44
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-07 Score=80.05 Aligned_cols=109 Identities=9% Similarity=0.024 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
..+......|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..++++++.++. +...|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 345555566666666666666666666532 224555666666666666666666666666665433 455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 687 LKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
...|++++|++.|+++++.. |.+...+..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 66666666666666666543 33444444433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-06 Score=87.10 Aligned_cols=167 Identities=11% Similarity=-0.055 Sum_probs=106.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHH
Q 004470 574 FNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNA-----ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGI---TPD--GNT 643 (751)
Q Consensus 574 ~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~ 643 (751)
+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|.+.+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455556666666666666666554221110 1223344455667778888887777765311 111 446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQ---KGFN-L--TTSSYNALIKGFLKRKKYLEARELFEEMRRGG----LVA-DRE 712 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~ 712 (751)
|+.+...|...|++++|+..++++++ .... + ...++..++..|.+.|++++|+..++++++.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 77788888888888888888888773 2111 1 12577788888888888888888888877531 111 156
Q ss_pred HHHHHHHHHHhcCChhHH-HHHHHHHHHc
Q 004470 713 IYYFFVDINFEEGNTEIT-LELCDAAIEC 740 (751)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 740 (751)
.|..++.+|.+.|++++| ...++++++.
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 777888888888888888 7778877653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.1e-07 Score=78.92 Aligned_cols=105 Identities=11% Similarity=-0.033 Sum_probs=81.2
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 637 ITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYY 715 (751)
Q Consensus 637 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 715 (751)
+.|+ ...+...+..|.+.|++++|++.|+++++..+. +...|..++.+|.+.|++++|+..++++++.+ +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 3443 345667778888888888888888888877654 77788888888888888888888888888764 55677788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 716 FFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
.++.++...|++++|++.++++++..+.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 8888888888888888888888876544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.71 E-value=4.6e-07 Score=81.93 Aligned_cols=130 Identities=8% Similarity=-0.006 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
..+..+...+...|++++|...+++.++.. +.+...+..+...+...|++++|+..++++++..+. +...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345666677778888888888888887743 336777888888888889999999999888887544 677888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCChhHHHHHHHHHHH
Q 004470 687 LKRKKYLEARELFEEMRRGGLVADREIYYFFV--DINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 739 (751)
...|++++|...++++++.. +.+...+..+. ..+.+.|++++|++.+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 89999999999999988764 44555554333 447788899999988887654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.3e-07 Score=89.20 Aligned_cols=188 Identities=6% Similarity=-0.130 Sum_probs=113.0
Q ss_pred hcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHH-------HHHHHhcCChhHHHHHHHHHHh
Q 004470 141 AAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIF-------FQVLVEARKLNEARKLFEKLLN 213 (751)
Q Consensus 141 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~ 213 (751)
..+++..|...+.+++..+ |..+.+|..+ ..++.+.++..+++..+.+.+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d----------------------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~ 75 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD----------------------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ 75 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHhC----------------------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788999999999888765 6667778777 6888888888888888887765
Q ss_pred CCCccCHH---------------------hHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCH
Q 004470 214 YGLVISVD---------------------SCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKI 272 (751)
Q Consensus 214 ~g~~p~~~---------------------~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 272 (751)
. .|+.. ........++...|++++|.+.|+.+...++. ++ ....+...+.+.|++
T Consensus 76 l--~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~ 151 (282)
T 4f3v_A 76 I--SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERW 151 (282)
T ss_dssp C--CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCH
T ss_pred C--ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCH
Confidence 3 33321 11222233333456677777777666665432 22 444555566666777
Q ss_pred HHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCCHHHHHHH
Q 004470 273 KEAHLLLLQMELRGCSP--DVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPN--PYTYNSVVRLLCKTSKVVEAETI 348 (751)
Q Consensus 273 ~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~ 348 (751)
++|+..|+...... .| ....+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|..+
T Consensus 152 ~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~ 230 (282)
T 4f3v_A 152 TDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL 230 (282)
T ss_dssp HHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777666443321 01 022455556666666666666666666654322132 22344455566666666666666
Q ss_pred HHHHHHC
Q 004470 349 LREMMNQ 355 (751)
Q Consensus 349 ~~~m~~~ 355 (751)
|+++...
T Consensus 231 l~~a~a~ 237 (282)
T 4f3v_A 231 LEWLQTT 237 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666665
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.1e-06 Score=84.38 Aligned_cols=229 Identities=9% Similarity=0.008 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-CHHHHH
Q 004470 480 GELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAG-NILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKS-G-EMVKAH 556 (751)
Q Consensus 480 g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~ 556 (751)
+..++|+++++.++..+.. +..+|+.--..+...| .+++++..++.+.... +-+..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3345566666666655433 4445555555555555 3666666666665544 44455555544444444 4 555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004470 557 ELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQG 636 (751)
Q Consensus 557 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 636 (751)
++++.+++.. +.+..+|+.-...+.+.|.++. .+ ...++++++.++++++..
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~--------------~~-------------~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGR--------------IS-------------EAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTC--------------CC-------------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccc--------------cc-------------hhhHHHHHHHHHHHHHhC
Confidence 5555555543 3345555544444444333330 00 000124555555555432
Q ss_pred CCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-----------------
Q 004470 637 ITPDGNTYNILLQGHCKARN-------MKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKY----------------- 692 (751)
Q Consensus 637 ~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------------- 692 (751)
+-|...|+.....+.+.++ ++++++.+++++...+. |...|+-+-..+.+.|+.
T Consensus 198 -p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~ 275 (349)
T 3q7a_A 198 -GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLN 275 (349)
T ss_dssp -TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----
T ss_pred -CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccccccccccc
Confidence 1244444444444444443 45566666666655444 555555555555544432
Q ss_pred ---HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 693 ---LEARELFEEMRRGG-----LVADREIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 693 ---~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
.+..+....+...+ -.+.+.....+++.|.+.|+.++|.+.++.+.++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 276 PDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp ----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222222222111 0245555666666666666666676666666543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-07 Score=91.08 Aligned_cols=206 Identities=10% Similarity=-0.087 Sum_probs=150.9
Q ss_pred hcCChHHHHHHHHhhhhCCCCChhHHHHH-------HHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhh-
Q 004470 107 IRSDYRLVLDFFDWACLRREPILEARCIV-------VQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTY- 178 (751)
Q Consensus 107 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~- 178 (751)
...|+..|++.|..+....|...+++.-+ ..+|.+.++..++...+.+.+..........+ . +...|
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~----~-~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI----A-IGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE----E-CCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh----c-cCCccc
Confidence 57899999999999999999999999888 67777777777777777777664311000000 0 00000
Q ss_pred -hcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcC
Q 004470 179 -KDWG--SDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWN 255 (751)
Q Consensus 179 -~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~ 255 (751)
-.++ ....+...++..|...|++++|.++|+.+... .|+.. ....++.++...+++++|+..|+...... .|.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Ccc
Confidence 0001 11235667899999999999999999999876 46555 55556666668899999999999776652 221
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 256 --TASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPD--VVSFSTIINGYCYLGELQRVLKLIEEMQIKG 321 (751)
Q Consensus 256 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 321 (751)
...+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34788889999999999999999999875432243 3466777888899999999999999999873
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3.1e-06 Score=84.92 Aligned_cols=163 Identities=9% Similarity=-0.019 Sum_probs=120.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HhhHHH
Q 004470 542 IMDAYCKSGEMVKAHELLRDMLDKGL-QPSV----VTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLK-PN----AATYNP 611 (751)
Q Consensus 542 li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~-p~----~~~~~~ 611 (751)
.+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45677888889999988888876421 1221 12334666666778899999999988874222 22 236888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 004470 612 LIKQHCLRNDMRTTAKIYKGMCA----Q-GITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQK----GFNLT-TSSYN 680 (751)
Q Consensus 612 l~~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 680 (751)
+...|...|++++|.+.++++++ . +..+. ..++..+...|.+.|++++|+..++++++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999999998884 1 11222 346888999999999999999999988763 22222 67899
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHH
Q 004470 681 ALIKGFLKRK-KYLEARELFEEMRR 704 (751)
Q Consensus 681 ~l~~~~~~~g-~~~~A~~~~~~~~~ 704 (751)
.++.+|.+.| ++++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999 57999999999875
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=8.5e-08 Score=85.20 Aligned_cols=97 Identities=8% Similarity=-0.043 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
..+..+...+...|++++|...|++.+... +.+...|..+..+|...|++++|+..|+++++.++. ++..+..++.+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 345555566666666666666666666542 225556666666666666666666666666665443 555666666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 004470 687 LKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~ 705 (751)
...|++++|+..|+++++.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=7.3e-06 Score=82.54 Aligned_cols=182 Identities=12% Similarity=0.029 Sum_probs=120.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCC-CHHHHHHHHHhchhcCCCcCHHHHHHHHHHHH
Q 004470 189 DIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCD-GLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267 (751)
Q Consensus 189 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (751)
+.+-..+.+.+..++|++++++++.. .|+..+.=..-+.+....| .++++++.++.+....+. +..+|+.-...+.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 33334444455667888888888877 5666544222333333455 588888888888887666 7777887777776
Q ss_pred hc-C-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 004470 268 RF-G-KIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQ--------RVLKLIEEMQIKGLKPNPYTYNSVVRLLC 337 (751)
Q Consensus 268 ~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 337 (751)
+. + ++++++++++.+.+... .|-.+|+.-...+.+.|.++ ++++.++++.+..+. |..+|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 66 6 78888888888887643 47777776665555555555 777777777776433 6666776666666
Q ss_pred hcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 338 KTSK-------VVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGN 376 (751)
Q Consensus 338 ~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 376 (751)
+.++ ++++++.+++++... +-|..+|+.+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 6665 567777777766653 4466677766666666554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-06 Score=82.37 Aligned_cols=132 Identities=10% Similarity=-0.078 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004470 536 TFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQ 615 (751)
Q Consensus 536 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~ 615 (751)
...+..+...+...|++++|...|++.. .|+...+..+...|...|++++|...+++..+.. +.+...+..+...
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 3455667788889999999999998774 5688899999999999999999999999998864 3367788889999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 616 HCLRNDMRTTAKIYKGMCAQGITPDG----------------NTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
|...|++++|.+.|++..+... .+. ..+..+...|.+.|++++|...++++++..+.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLR-GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTT-TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHcccHHHHHHHHHHHHHhCC-CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 9999999999999999988532 222 67888899999999999999999999987544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.63 E-value=9.8e-08 Score=84.76 Aligned_cols=102 Identities=4% Similarity=-0.093 Sum_probs=53.1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHH
Q 004470 125 REPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEA 204 (751)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 204 (751)
.|.+..+++.++..+...|++++|...+++++..+ |.++.+|..|+.+|...|++++|
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----------------------P~~~~~~~~lg~~~~~~g~~~~A 89 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----------------------FYNVDYIMGLAAIYQIKEQFQQA 89 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHHccHHHH
Confidence 34444555555555555666666666665555443 45555555566666666666666
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc
Q 004470 205 RKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL 250 (751)
Q Consensus 205 ~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~ 250 (751)
+..|+++++. .|+.......++.++...|++++|...|+++.+.
T Consensus 90 i~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 90 ADLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666655554 3333333333333333445555555555555444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-06 Score=74.04 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=79.3
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 606 AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 606 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
...+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+..+. +..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 3455666666777777777777777776642 235666777777777777888888777777776433 66677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004470 686 FLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEE 724 (751)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (751)
+...|++++|...++++.+.. +.+...+..++..+.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 888888888888888777753 44566666666555543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=6.3e-07 Score=91.91 Aligned_cols=132 Identities=10% Similarity=-0.061 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD--------------GNTYNILLQGHCKARNMKEAWFLHKEMVQKGF 672 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 672 (751)
..+..+...+...|++++|.+.|++.++...... ...|..+..+|.+.|++++|+..++++++..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444445555555555555555555554321110 36677777777777777777777777777654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHHHc
Q 004470 673 NLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEIT-LELCDAAIEC 740 (751)
Q Consensus 673 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 740 (751)
. +...|..++.+|...|++++|+..|+++++.. +.+...+..++.++.+.|+.++| .+.+++++.+
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 66777777777777788888888877777753 45667777777777777777777 4566666543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-06 Score=75.47 Aligned_cols=119 Identities=8% Similarity=-0.021 Sum_probs=90.2
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 606 AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 606 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|+..++++.+..+. +...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 4456666677777888888888888777643 335677778888888888888888888888876544 67788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 004470 686 FLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNT 727 (751)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 727 (751)
+...|++++|...++++.+.. +.+...+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 888888888888888888764 45677777777787777764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.6e-07 Score=85.94 Aligned_cols=97 Identities=13% Similarity=-0.064 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----H
Q 004470 643 TYNILLQGHCKARNMKEAWFLHKEMVQK----GFNL--TTSSYNALIKGFLKRKKYLEARELFEEMRRGGL-VAD----R 711 (751)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~ 711 (751)
++..+...+...|++++|...+++.++. +..+ ....+..++..+...|++++|...+++.++..- ..+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444445555555555555555544432 1010 122344555555555555555555555543100 011 1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004470 712 EIYYFFVDINFEEGNTEITLELCDAAIE 739 (751)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (751)
..+..++.++...|++++|.+.++++++
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2234455555555555555555555554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.4e-07 Score=84.11 Aligned_cols=122 Identities=13% Similarity=0.098 Sum_probs=90.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 004470 582 CMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQG-HCKARNM--K 658 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~ 658 (751)
...|++++|...+++..+.. +.+...+..+...|...|++++|.+.|+++++.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45678888888888887763 2356778888888888888888888888888753 2356677777777 6788887 8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 659 EAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 659 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
+|+..++++++..+. +...+..++..|...|++++|...++++++..
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888888887544 67778888888888888888888888888753
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=94.06 Aligned_cols=99 Identities=12% Similarity=-0.034 Sum_probs=74.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHH
Q 004470 183 SDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIM 262 (751)
Q Consensus 183 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 262 (751)
.++..+..++..+.+.|++++|+..|+++++. .|+...+...++.++...|++++|...++++.+..+. +...+..+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 78 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 78 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 34567788888999999999999999998886 5655555555555555678888888888888777554 67777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 004470 263 IHCLCRFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~ 284 (751)
..+|.+.|++++|+..|++..+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7788888888888888777654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-07 Score=93.68 Aligned_cols=96 Identities=15% Similarity=-0.028 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004470 502 YTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGF 581 (751)
Q Consensus 502 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 581 (751)
..+..+...+.+.|++++|+..+++..+.. +.+...|..+...|.+.|++++|...+++.++.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444445555555555555555554432 2344444445555555555555555555544432 22344444444444
Q ss_pred HhcCChhHHHHHHHHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLE 599 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~ 599 (751)
...|++++|...+++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 455555555554444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.58 E-value=4e-06 Score=84.10 Aligned_cols=166 Identities=9% Similarity=-0.027 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC--H
Q 004470 538 TYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSV------VTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL---KPN--A 606 (751)
Q Consensus 538 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~---~p~--~ 606 (751)
.+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445566677888888888888777765322 22 2234455566777888889888888875421 111 3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-C
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQ-GITPD-----GNTYNILLQGHCKARNMKEAWFLHKEMVQKG----FNL-T 675 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~ 675 (751)
.+++.+...|...|++++|.+.++++.+. ...|+ ..++..++..|.+.|++++|+..++++++.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47788888889999999999999888731 01122 2578888999999999999999999887632 111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 004470 676 TSSYNALIKGFLKRKKYLEA-RELFEEMRR 704 (751)
Q Consensus 676 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 704 (751)
..+|..++.+|.+.|++++| ...++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56888999999999999999 777888765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.9e-07 Score=76.16 Aligned_cols=117 Identities=13% Similarity=0.041 Sum_probs=77.4
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 606 AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 606 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|++.++++++..+. +...+..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 4455666666666777777777777666542 225666667777777777777777777777765443 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 686 FLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG 725 (751)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (751)
+.+.|++++|.+.++++.+.. +.+...+..+..++.+.|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 777777777777777777643 334455666666666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-06 Score=75.15 Aligned_cols=96 Identities=19% Similarity=0.159 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
..+..+...+...|++++|.+.|++.++.. +.+...|..+..++.+.|++++|+..++++++.++. +...|..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 345555555666666666666666666542 224555666666666666666666666666665433 455666666666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004470 687 LKRKKYLEARELFEEMRR 704 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~ 704 (751)
...|++++|+..|+++++
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666666655
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.1e-06 Score=76.33 Aligned_cols=130 Identities=12% Similarity=-0.024 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 572 VTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGH 651 (751)
Q Consensus 572 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 651 (751)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++.++.. +.+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555666666777777777777766653 2245666667777777777777777777777643 23566777777788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 004470 652 CKARNMKEAWFLHKEMVQKGFNLTTSSYNAL--IKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
...|++++|...++++++..+. +...+..+ +..+.+.|++++|++.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888888776543 45555333 3336677888888888776543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=77.22 Aligned_cols=97 Identities=12% Similarity=-0.033 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
..+..+...+...|++++|.+.|++++..+ +.+...|..+..+|.+.|++++|+..|+++++.++. ++..+..++.+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 344455566667777777777777776643 235666666777777777777777777777766544 566666777777
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 004470 687 LKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~ 705 (751)
...|++++|.+.|+++++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-06 Score=82.06 Aligned_cols=157 Identities=14% Similarity=0.041 Sum_probs=86.6
Q ss_pred HhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----C
Q 004470 140 VAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNY----G 215 (751)
Q Consensus 140 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g 215 (751)
...|++++|..+++.+...+ ...+.++..++.++...|++++|...++++++. |
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 60 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHP----------------------ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG 60 (203)
T ss_dssp ----CHHHHHHHHHHHHTST----------------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCCh----------------------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC
Confidence 34688888888544443221 234567888999999999999999999988762 2
Q ss_pred CccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc----CCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 004470 216 LVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL----GIC--WNTASYNIMIHCLCRFGKIKEAHLLLLQMELR---- 285 (751)
Q Consensus 216 ~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 285 (751)
..|........++.++...|++++|...|+++.+. +.. .....+..+...+...|++++|...+++....
T Consensus 61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 140 (203)
T 3gw4_A 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 23333333444444444566666666666665443 101 12334555566666666666666666554321
Q ss_pred CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 286 GCS-PDVVSFSTIINGYCYLGELQRVLKLIEEMQ 318 (751)
Q Consensus 286 g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 318 (751)
+.. .-..++..+...+...|++++|.+.+++..
T Consensus 141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 100 001223444455555555555555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-06 Score=74.89 Aligned_cols=118 Identities=7% Similarity=-0.141 Sum_probs=64.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMI 263 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 263 (751)
++..+..++..+.+.|++++|...|+++++. .|+.......++.++...|++++|.+.|+++.+..+. +...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 3445555566666666666666666665554 3333333333444444556666666666666555433 455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 004470 264 HCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLG 305 (751)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 305 (751)
..+.+.|++++|...|++..+... .+...+..+...+.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 666666666666666666655422 23344555555555444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=9.6e-07 Score=78.29 Aligned_cols=104 Identities=11% Similarity=-0.049 Sum_probs=60.5
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChh
Q 004470 123 LRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLN 202 (751)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 202 (751)
...|.+..++..++..+...|++++|...+.+++..+ |.++.+|..++.+|...|+++
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD----------------------HYDSRFFLGLGACRQAMGQYD 72 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----------------------cccHHHHHHHHHHHHHHhhHH
Confidence 3344445555566666666666666666666665543 455566666666666666666
Q ss_pred HHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc
Q 004470 203 EARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL 250 (751)
Q Consensus 203 ~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~ 250 (751)
+|+..|+++++. .|+.......++.++...|++++|.+.|+++.+.
T Consensus 73 ~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 73 LAIHSYSYGAVM--DIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666655 3443333333444444556666666666665554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-06 Score=78.01 Aligned_cols=100 Identities=8% Similarity=-0.002 Sum_probs=87.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIK 684 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 684 (751)
+...+..+...+...|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..++++++..+. +...|..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45677888888999999999999999999853 336888899999999999999999999999988655 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 004470 685 GFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
+|...|++++|+..|+++++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999998853
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.1e-06 Score=73.62 Aligned_cols=98 Identities=11% Similarity=-0.025 Sum_probs=62.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIK 684 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 684 (751)
+...+..+...+...|++++|...|++.++.. +.+...+..+...+...|++++|+..++++++.++. +...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 45556666666666666666666666666542 224556666666666666666666666666665433 5566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004470 685 GFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~ 704 (751)
++...|++++|+..|+++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-06 Score=74.97 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C----HHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL--T----TSSYN 680 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~----~~~~~ 680 (751)
..+..+...+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|++.++++++.++.. + ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 344555556666666666666666665532 1235555556666666666666666666655432110 1 12455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 681 ALIKGFLKRKKYLEARELFEEMRRGGLVADREI 713 (751)
Q Consensus 681 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 713 (751)
.++.++...|++++|++.|++.++. .||+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 5555555666666666666665542 344443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-06 Score=72.45 Aligned_cols=101 Identities=13% Similarity=-0.025 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 004470 641 GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVA--DREIYYFFV 718 (751)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 718 (751)
...+..+...+...|++++|+..++++++..+. +...+..++..+...|++++|++.++++++.. +. +...+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 445666777788888888888888888876544 67788888888888888888888888888864 44 677888888
Q ss_pred HHHHhc-CChhHHHHHHHHHHHcCCC
Q 004470 719 DINFEE-GNTEITLELCDAAIECYLV 743 (751)
Q Consensus 719 ~~~~~~-g~~~~A~~~~~~~~~~~~~ 743 (751)
.++.+. |++++|.+.++++++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 888888 8888888888888877654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.46 E-value=3.4e-07 Score=93.88 Aligned_cols=162 Identities=9% Similarity=-0.039 Sum_probs=110.4
Q ss_pred HHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHH
Q 004470 112 RLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIF 191 (751)
Q Consensus 112 ~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 191 (751)
+.|+..|+.+....+....++..++..+...|++++|...+.+++.............. ..+ -+....++..+
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~-~~~------~~~~~~~~~nl 202 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA-QKA------QALRLASHLNL 202 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH-HHH------HHHHHHHHHHH
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHH-HHH------HHHHHHHHHHH
Confidence 44555555554444556678889999999999999999999999876421110000000 000 01114678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCC
Q 004470 192 FQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGK 271 (751)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 271 (751)
+.+|.+.|++++|+..|+++++. .|+.......++.++...|++++|+..|+++.+..+. +..++..+...+.+.|+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 5655554555555555778888888888888877654 67777778888888888
Q ss_pred HHHH-HHHHHHHH
Q 004470 272 IKEA-HLLLLQME 283 (751)
Q Consensus 272 ~~~A-~~~~~~m~ 283 (751)
.++| ..+|..|.
T Consensus 280 ~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 280 QLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8777 34555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-06 Score=74.49 Aligned_cols=96 Identities=16% Similarity=-0.039 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004470 645 NILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEE 724 (751)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (751)
..+...+.+.|++++|+..++++++..+. +...|..++.++...|++++|+..++++++.. +.+...+..++.++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34556667777777777777777776544 66777777777777777777777777777754 44666777777777777
Q ss_pred CChhHHHHHHHHHHHcCC
Q 004470 725 GNTEITLELCDAAIECYL 742 (751)
Q Consensus 725 g~~~~A~~~~~~~~~~~~ 742 (751)
|++++|++.++++++...
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 777777777777776543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.45 E-value=5.3e-07 Score=79.37 Aligned_cols=106 Identities=11% Similarity=-0.066 Sum_probs=62.4
Q ss_pred hhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCC
Q 004470 121 ACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARK 200 (751)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~ 200 (751)
+....|.+...+..++..+...|++++|...+.+++..+ |.++.+|..++.+|.+.|+
T Consensus 10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~~~~~lg~~~~~~g~ 67 (142)
T 2xcb_A 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD----------------------HYDARYFLGLGACRQSLGL 67 (142)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC----------------------CccHHHHHHHHHHHHHHhh
Confidence 333344445555566666666666666666666665543 4556666666666666666
Q ss_pred hhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc
Q 004470 201 LNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL 250 (751)
Q Consensus 201 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~ 250 (751)
+++|+..|+++++. .|+.......++.++...|++++|.+.|+++.+.
T Consensus 68 ~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 68 YEQALQSYSYGALM--DINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666665 3444333344444444556666666666666554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.44 E-value=8.4e-06 Score=69.09 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 571 VVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQG 650 (751)
Q Consensus 571 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 650 (751)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555566666666666666666665542 2244555666666666666666666666666542 2355666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004470 651 HCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK 688 (751)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 688 (751)
+...|++++|...++++.+..+. +...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHh
Confidence 77777777777777777665433 45555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.1e-06 Score=73.64 Aligned_cols=120 Identities=10% Similarity=-0.050 Sum_probs=83.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMI 263 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 263 (751)
++.++..++..+...|++++|...|+++++. .|+.......++.++...|++++|...++++.+..+. +...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHH
Confidence 4567788899999999999999999998876 4544444444455545677778888877777776543 566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 004470 264 HCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGEL 307 (751)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 307 (751)
..+.+.|++++|...|++..+... .+...+..+...+.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 777777777777777777665432 3555666666666665553
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00015 Score=72.70 Aligned_cols=98 Identities=7% Similarity=0.006 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Q 004470 482 LETANELLHEMCRKGLQLNIYTYNSIVNGLCKAG--NILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGE-MVKAHEL 558 (751)
Q Consensus 482 ~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~ 558 (751)
+++++.+++.+....++ +..+|+.-.-.+.+.| .+++++.+++.+.+.. +-+..+|+--...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34555555555554333 4445544444444444 2555555555555544 3445555544444444554 3555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHH
Q 004470 559 LRDMLDKGLQPSVVTFNVLMNGFC 582 (751)
Q Consensus 559 ~~~~~~~~~~p~~~~~~~li~~~~ 582 (751)
++.+++.. +-|..+|+.....+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHH
Confidence 55555543 334455544444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00016 Score=72.42 Aligned_cols=137 Identities=9% Similarity=0.039 Sum_probs=73.3
Q ss_pred HhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 477 CKSGELE-TANELLHEMCRKGLQLNIYTYNSIVNGLCKAGN----------ILQAVKLMEDMEVAGFHPDTFTYTTIMDA 545 (751)
Q Consensus 477 ~~~g~~~-~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 545 (751)
.+.|.++ +|+++++.+...++. +...|+.--..+...+. +++++.+++.+.... +-+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455543 677777777766433 44455544333333322 455666666665543 4455555555555
Q ss_pred HHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 004470 546 YCKSG--EMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGM-IEDGEKLLKWMLEKGLKPNAATYNPLIKQHC 617 (751)
Q Consensus 546 ~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~ 617 (751)
+.+.+ .+++++.+++.+.+.. +-|..+|+.-...+...|. ++++++.++++++..+. |...|+.....+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~ 190 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 190 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 55555 3566666666666543 3355555555555555555 35666666666655322 4445544444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=8.2e-06 Score=68.34 Aligned_cols=109 Identities=9% Similarity=0.022 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345555566666677777777777666542 225666666677777777777777777777765433 566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 687 LKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
...|++++|.+.++++.+.+ +.+...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 77777777777777777643 33444444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=4.1e-06 Score=70.23 Aligned_cols=102 Identities=11% Similarity=-0.096 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVD 719 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (751)
....+..++..+...|++++|...++++.+..+. +...+..++..+...|++++|...++++.+.. +.+...+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3456778889999999999999999999987654 78899999999999999999999999999864 557888999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC
Q 004470 720 INFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
++...|++++|.+.++++++....
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC
Confidence 999999999999999999987543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=4.3e-06 Score=78.26 Aligned_cols=132 Identities=10% Similarity=-0.095 Sum_probs=87.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 609 YNPLIKQHCLRNDMRTTAKIYKGMCAQGIT-P--------------DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 609 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
+..+...+...|++++|.+.|++.++.... | ....+..+..+|.+.|++++|+..++++++..+.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 444444555555555555555555553111 0 0267778888888999999999999998887544
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHcCC
Q 004470 674 LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITL-ELCDAAIECYL 742 (751)
Q Consensus 674 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~ 742 (751)
+...+..++.+|...|++++|+..|+++++.. +.+...+..+..++...|+.+++. ..+..+...+.
T Consensus 121 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 121 -NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred -cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77888889999999999999999999988864 557788888888888888888877 66666666553
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-06 Score=79.10 Aligned_cols=121 Identities=4% Similarity=0.004 Sum_probs=76.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH-HHhcCCH--
Q 004470 196 VEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC-LCRFGKI-- 272 (751)
Q Consensus 196 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 272 (751)
...|++++|+..++++++. .|+.......++.++...|++++|...|+++.+..+. +...+..+... +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcch
Confidence 4567777777777777665 4544444445555555667777777777777666544 56666666666 6667776
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 273 KEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIK 320 (751)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 320 (751)
++|+..|++...... .+...+..+...+...|++++|...++++.+.
T Consensus 98 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777665432 34566666777777777777777777777665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.6e-06 Score=71.07 Aligned_cols=101 Identities=12% Similarity=0.115 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 004470 642 NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG--LVAD----REIYY 715 (751)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~ 715 (751)
..+..++..+.+.|++++|+..|+++++..+. +...|..++.+|.+.|++++|++.++++++.+ ..++ ...|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 44667777888888888888888888877554 67778888888888888888888888877632 1122 24566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 716 FFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
.++.++...|++++|++.++++++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7777888888888888888888775443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=4.2e-07 Score=85.31 Aligned_cols=146 Identities=8% Similarity=-0.123 Sum_probs=87.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 004470 128 ILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKL 207 (751)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 207 (751)
....+..++..+...|++++|...+.+++.....+...... ....... .....++..++.+|.+.|++++|+..
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~ 110 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-ILLDKKK-----NIEISCNLNLATCYNKNKDYPKAIDH 110 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-HHHHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-hHHHHHH-----HHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34567778888999999999999999998764211100000 0000000 00125677888888899999999998
Q ss_pred HHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHH-HHHHHH
Q 004470 208 FEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAH-LLLLQM 282 (751)
Q Consensus 208 ~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m 282 (751)
++++++. .|+.......++.++...|++++|.+.|+++.+..+. +..++..+...+.+.++.+++. ..|..|
T Consensus 111 ~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 111 ASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876 4554444444555544567777777777777666543 5566666666666665555554 333333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.9e-06 Score=71.84 Aligned_cols=94 Identities=6% Similarity=-0.126 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (751)
+..++..+.+.|++++|+..|+++++. .|+.......++.++...|++++|+..|+++.+..+. +..+|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 334444444444444444444444443 2333222223333333444444444444444444332 3444555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 004470 268 RFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 268 ~~g~~~~A~~~~~~m~~ 284 (751)
..|++++|+..|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.5e-05 Score=83.17 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=27.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 509 NGLCKAGNILQAVKLMEDMEVAGFHPD----------------TFTYTTIMDAYCKSGEMVKAHELLRDML 563 (751)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~ 563 (751)
..+.+.|++++|++.+..+.+...... ...+..++..|.+.|++++|.+.+..+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345556666666666666655431110 0124445555555555555555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.8e-05 Score=69.62 Aligned_cols=110 Identities=7% Similarity=-0.093 Sum_probs=70.0
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPD----GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYN 680 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 680 (751)
+...+..+...+...|++++|.+.|++.++. .|+ ...+..+...|...|++++|+..++++++..+. +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 3445555666666666666666666666653 344 455666667777777777777777777765433 566677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 681 ALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 681 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
.++.++...|++++|...++++++.. +.+...+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHH
Confidence 77777777777777777777777643 33444444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-05 Score=71.61 Aligned_cols=102 Identities=9% Similarity=-0.090 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 570 SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQ 649 (751)
Q Consensus 570 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 649 (751)
+...+..+...+...|++++|+..|++.++... .+...|..+..+|...|++++|++.+++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456677777888888888888888888887632 266777788888888888888888888888753 235777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 650 GHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 650 ~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
+|...|++++|+..|+++++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Confidence 888888888888888888876443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.29 E-value=8.9e-06 Score=70.62 Aligned_cols=100 Identities=10% Similarity=-0.032 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVD 719 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (751)
+...+..+...+...|++++|+..|+++++..+. +...|..++.++...|++++|+..++++++.+ +.+...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 4455555555556666666666666665555433 45555555666666666666666666655543 334555555555
Q ss_pred HHHhcCChhHHHHHHHHHHHcC
Q 004470 720 INFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
++...|++++|++.++++++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 6666666666666666555543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-05 Score=68.95 Aligned_cols=94 Identities=11% Similarity=0.020 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 004470 610 NPLIKQHCLRNDMRTTAKIYKGMCAQGITPDG---NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT---TSSYNALI 683 (751)
Q Consensus 610 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 683 (751)
..+...+...|++++|.+.|+++++... .+. ..+..+...+.+.|++++|+..++++++..+. + +..+..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 3455566677777777777777776431 122 45666677777777777777777777775443 3 55666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 004470 684 KGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
.++...|++++|...|+++++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-05 Score=69.91 Aligned_cols=103 Identities=9% Similarity=-0.097 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004470 639 PDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT---TSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYY 715 (751)
Q Consensus 639 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 715 (751)
.+...+..+...+...|++++|+..|+++++..+. + ...+..++..|...|++++|+..++++++.. +.+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 35778888999999999999999999999986433 2 6788999999999999999999999999864 55788899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 716 FFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
.++.++...|++++|.+.++++++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999987643
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.25 E-value=7.5e-06 Score=67.90 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=50.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC-cCHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC-WNTASYNIM 262 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 262 (751)
++.++..++.++.+.|++++|...|+++++. .|+.......++.++...|++++|.+.|+++.+..+. .+...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3444455555555555555555555555544 2332222233333333455555555555555554321 034555556
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhc
Q 004470 263 IHCLCRF-GKIKEAHLLLLQMELR 285 (751)
Q Consensus 263 i~~~~~~-g~~~~A~~~~~~m~~~ 285 (751)
...+.+. |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666666666665554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.25 E-value=9.2e-06 Score=69.57 Aligned_cols=112 Identities=11% Similarity=0.103 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN--LT----TSSYN 680 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~ 680 (751)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+..+. ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666677777777777777776643 335666777777777777888887777777765321 12 56777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 681 ALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDIN 721 (751)
Q Consensus 681 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (751)
.++..+...|++++|.+.++++.+. .|+......+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 7788888888888888888888774 34665555554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.25 E-value=8.4e-06 Score=69.80 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 004470 641 GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGL--VAD----REIY 714 (751)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~ 714 (751)
...+..+...+...|++++|+..++++++..+. +...+..++..+...|++++|...++++.+... .++ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456778889999999999999999999987644 788999999999999999999999999988531 222 7788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 715 YFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
..++..+...|++++|.+.++++++...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999998754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=5e-06 Score=74.33 Aligned_cols=134 Identities=12% Similarity=0.030 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HH
Q 004470 608 TYNPLIKQHCLRNDMRTTAKIYKGMCAQGI-TPD----GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN-LT----TS 677 (751)
Q Consensus 608 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~ 677 (751)
++..+...+...|++++|.+.+++.++... .++ ..++..+...+...|++++|...++++.+.... .+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344445555555555555555555543210 011 235666777777888888888888776653111 11 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 678 SYNALIKGFLKRKKYLEARELFEEMRRG----GLVA-DREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 678 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.+..++..+...|++++|...++++++. +.++ ....+..++..+...|++++|.+.++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 6777888888888888888888887752 1111 13556778888899999999999999888754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.24 E-value=1e-05 Score=71.02 Aligned_cols=98 Identities=10% Similarity=-0.025 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNL------T-----TSSYNALIKGFLKRKKYLEARELFEEMRRG------- 705 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 705 (751)
+......+.+.|++++|+..|+++++..+.. + ...|..+..++.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555566666666666666666643331 2 227777777788888888888888877774
Q ss_pred CCCCCHHHH----HHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 706 GLVADREIY----YFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 706 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
. +.+...| +..+.++...|++++|++.|+++++...
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 3 3345666 7777888888888888888888877643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.5e-05 Score=81.13 Aligned_cols=183 Identities=11% Similarity=0.039 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhh-HHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAF-THFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
.+...-++.+...|++++|...+..++........... ....... .+....++..|+.+|...|++++|.+.+
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~al~~l~~~y~~~~~~~~a~~~~ 78 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKR------RNEQETSILELGQLYVTMGAKDKLREFI 78 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHH------HHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHH------hhhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455677888899999999999999876422111000 0000000 0001135678999999999999999999
Q ss_pred HHHHhCC-CccC---HHhHHHHHHHHHhCCCCHHHHHHHHHhchhc----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004470 209 EKLLNYG-LVIS---VDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL----GICWN-TASYNIMIHCLCRFGKIKEAHLLL 279 (751)
Q Consensus 209 ~~~~~~g-~~p~---~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 279 (751)
.++.+.- ..++ .......++.+....|+++.|..++.+.... +..+. ..++..|+..|...|++++|..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 158 (434)
T 4b4t_Q 79 PHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALI 158 (434)
T ss_dssp HHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 9887531 1111 1233445666666667888888887776432 11111 345566677777777777777776
Q ss_pred HHHHhc--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 280 LQMELR--GC--SP-DVVSFSTIINGYCYLGELQRVLKLIEEMQ 318 (751)
Q Consensus 280 ~~m~~~--g~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 318 (751)
++.... +. .+ ....|..++..|...|++++|...+++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 159 NDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 665431 11 11 13345555666666666666666665554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=86.20 Aligned_cols=139 Identities=6% Similarity=-0.116 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 570 SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQ 649 (751)
Q Consensus 570 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 649 (751)
....+..+...+.+.|++++|...|++.++....... + .-+... +... -....|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~----~~~~----~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK----ASES----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----HHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----HHHH----HHHHHHHHHHH
Confidence 3445666666677777777777777776654211110 0 000000 0000 00234444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 004470 650 GHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEI 729 (751)
Q Consensus 650 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 729 (751)
+|.+.|++++|+..++++++..+. +...|..++.+|...|++++|+..|+++++.. +.+...+..+..++.+.|+.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554333 44455555555555555555555555555432 2233444445555555555444
Q ss_pred HH
Q 004470 730 TL 731 (751)
Q Consensus 730 A~ 731 (751)
|.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-05 Score=72.61 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=81.2
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 606 AATYNPLIKQHCLRNDMRTTAKIYKGMCAQ--------GI--------TP-DGNTYNILLQGHCKARNMKEAWFLHKEMV 668 (751)
Q Consensus 606 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--------g~--------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 668 (751)
...+......+.+.|++++|++.|.+.++. .. .| +...|..+..+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777888889999999999999988874 00 12 24568888888999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004470 669 QKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG 706 (751)
Q Consensus 669 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 706 (751)
+.++. +...|..++.+|...|++++|...|+++++..
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 87655 77888889999999999999999999988863
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=8.4e-06 Score=69.21 Aligned_cols=96 Identities=11% Similarity=-0.088 Sum_probs=79.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHH
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCL 266 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 266 (751)
.+..++..+.+.|++++|+..|+++++. .|+.......++.++...|++++|+..|+++++..+. +...+..+..+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4667888999999999999999999987 6776666667777777788999999999988888665 677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 004470 267 CRFGKIKEAHLLLLQMELR 285 (751)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~ 285 (751)
.+.|++++|+..|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888899998888887764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.9e-06 Score=70.82 Aligned_cols=86 Identities=13% Similarity=0.001 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 619 RNDMRTTAKIYKGMCAQGI--TPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR 696 (751)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 696 (751)
.|++++|+..|++.++.+. +.+...+..+...|...|++++|+..++++++..+. +...+..++.++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777776431 123556777777788888888888888888777555 6777777888888888888888
Q ss_pred HHHHHHHHC
Q 004470 697 ELFEEMRRG 705 (751)
Q Consensus 697 ~~~~~~~~~ 705 (751)
..++++++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887774
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=6.8e-05 Score=65.22 Aligned_cols=111 Identities=11% Similarity=0.090 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 004470 620 NDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK----RKKYLEA 695 (751)
Q Consensus 620 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 695 (751)
++.++|.++|++..+.| .|+.. |...|...+..++|++.|++..+.| ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666666666655 22322 5555555556666666666666654 55666666666665 5666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 004470 696 RELFEEMRRGGLVADREIYYFFVDINFE----EGNTEITLELCDAAIECY 741 (751)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 741 (751)
+++|+++.+.| ++..+..++..|.. .++.++|+++++++.+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666653 45556666666666 666667777776666655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.5e-06 Score=71.16 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=75.0
Q ss_pred hcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 004470 653 KARNMKEAWFLHKEMVQKGF--NLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEIT 730 (751)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 730 (751)
..|++++|+..|+++++.+. +.+...+..++.+|...|++++|+..++++++.. +.+...+..++.++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 46899999999999998741 2256789999999999999999999999999975 66789999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 004470 731 LELCDAAIECYLV 743 (751)
Q Consensus 731 ~~~~~~~~~~~~~ 743 (751)
++.++++++....
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999987544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=6.6e-06 Score=88.60 Aligned_cols=119 Identities=9% Similarity=0.011 Sum_probs=86.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 614 KQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYL 693 (751)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 693 (751)
..+...|++++|.+.+++.++.. +.+...|..+..+|.+.|++++|++.++++++..+. +...|..++.+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 34556788888888888887742 235777888888888888888888888888887554 6778888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 004470 694 EARELFEEMRRGGLVADREIYYFFVDI--NFEEGNTEITLELCD 735 (751)
Q Consensus 694 ~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 735 (751)
+|++.++++++.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888753 3344555555555 777888888888877
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.5e-05 Score=80.93 Aligned_cols=91 Identities=11% Similarity=-0.020 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVD 719 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (751)
+...|..+..+|.+.|++++|+..++++++..+. +...|..++.+|...|++++|++.|+++++.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567888889999999999999999999987654 78889999999999999999999999998864 557778888888
Q ss_pred HHHhcCChhHHHH
Q 004470 720 INFEEGNTEITLE 732 (751)
Q Consensus 720 ~~~~~g~~~~A~~ 732 (751)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.8e-05 Score=70.53 Aligned_cols=131 Identities=13% Similarity=0.025 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 004470 574 FNVLMNGFCMSGMIEDGEKLLKWMLEKGLK-PN----AATYNPLIKQHCLRNDMRTTAKIYKGMCAQ----GITP-DGNT 643 (751)
Q Consensus 574 ~~~li~~~~~~g~~~~A~~l~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~ 643 (751)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+. +..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444455555555555444432100 01 124455555566666666666666665541 1001 1345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQK----GFN-LTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
+..+...+...|++++|...+++.++. +.. .....+..+...+...|++++|.+.+++.++
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 667777778888888888888877653 111 1134677788888888999999888888775
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.8e-05 Score=65.01 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNY 214 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 214 (751)
++..++.++.+.|++++|...|+++++.
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4445555555555555555555555544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.5e-05 Score=70.24 Aligned_cols=102 Identities=10% Similarity=0.010 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHc--------CC---------CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 571 VVTFNVLMNGFCMSGMIEDGEKLLKWMLEK--------GL---------KPNAATYNPLIKQHCLRNDMRTTAKIYKGMC 633 (751)
Q Consensus 571 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~--------g~---------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 633 (751)
...+......+.+.|++++|+..|.+.+.. .. +.+...|..+..+|...|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777888888899999999999888764 00 1123567788888889999999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 634 AQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 634 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
+.+ +.+...|..+..+|...|++++|+..|+++++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 853 336778888889999999999999999998887543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.06 E-value=7.3e-06 Score=83.97 Aligned_cols=152 Identities=11% Similarity=-0.033 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 571 VVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQG 650 (751)
Q Consensus 571 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 650 (751)
...+..+...+.+.|++++|...|++.+.. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455666777777788888888888887764 333321 112233333332221 1367888999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhH
Q 004470 651 HCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDI-NFEEGNTEI 729 (751)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 729 (751)
|.+.|++++|+..++++++..+. +...|..++.+|...|++++|+..|+++++.. +.+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987654 78899999999999999999999999998753 3455666666665 345577888
Q ss_pred HHHHHHHHHHcCCC
Q 004470 730 TLELCDAAIECYLV 743 (751)
Q Consensus 730 A~~~~~~~~~~~~~ 743 (751)
+.+.|+++++....
T Consensus 318 a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 318 QKEMYKGIFKGKDE 331 (338)
T ss_dssp --------------
T ss_pred HHHHHHHhhCCCCC
Confidence 99999999877644
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00013 Score=79.83 Aligned_cols=173 Identities=10% Similarity=0.032 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC-
Q 004470 552 MVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGM----------IEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRN- 620 (751)
Q Consensus 552 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g- 620 (751)
.++|.+.+++++..+ +.+..+|+.--..+...|+ ++++++.++.+.+...+ +..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 456777777777654 4456667666666666666 78888888888876433 6677777777777778
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 004470 621 -DMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKAR-NMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKR--------- 689 (751)
Q Consensus 621 -~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 689 (751)
+++++++.++++++.+ +-|...|+.-...+.+.| .++++++.++++++.++. +...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 6788888888888864 336777888777788888 888999999998888766 888888887777663
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 004470 690 -----KKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEI 729 (751)
Q Consensus 690 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 729 (751)
+.+++|++.+++++... |.|...|..+...+.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999999865 6678888888888888777554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.04 E-value=3.5e-06 Score=90.29 Aligned_cols=155 Identities=8% Similarity=-0.069 Sum_probs=96.2
Q ss_pred HHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHH
Q 004470 113 LVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFF 192 (751)
Q Consensus 113 ~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 192 (751)
.|+..|+.+....+....++..++..+...|++++|...+.+++........... .....+ . +....+|..++
T Consensus 252 ~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~-~-----~~~~~~~~nla 324 (457)
T 1kt0_A 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE-KESKAS-E-----SFLLAAFLNLA 324 (457)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-HHHHHH-H-----HHHHHHHHHHH
T ss_pred cCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh-HHHHHH-H-----HHHHHHHHHHH
Confidence 3444444444334455667888999999999999999999999875311100000 000000 0 01145778888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCH
Q 004470 193 QVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKI 272 (751)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 272 (751)
.+|.+.|++++|+..|+++++. .|+.......++.++...|++++|+..|+++.+..+. +..++..+..++.+.|+.
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888876 4554444444444444667777777777777776544 555666666667666666
Q ss_pred HHHHH
Q 004470 273 KEAHL 277 (751)
Q Consensus 273 ~~A~~ 277 (751)
++|..
T Consensus 402 ~~a~~ 406 (457)
T 1kt0_A 402 NERDR 406 (457)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.02 E-value=3e-05 Score=83.46 Aligned_cols=115 Identities=8% Similarity=-0.083 Sum_probs=83.9
Q ss_pred hcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChh
Q 004470 107 IRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPH 186 (751)
Q Consensus 107 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (751)
.+++++.|+..|+.+....|.+..++..++..+...|++++|...++++++.. |.++.
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----------------------p~~~~ 75 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----------------------KKYIK 75 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------------TTCHH
T ss_pred HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------CCCHH
Confidence 35788888888888888888888888888888888888888888888888765 56677
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH--HhCCCCHHHHHHHHH
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRL--SNTCDGLRMVVKSFT 245 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l--~~~~~~~~~a~~~~~ 245 (751)
++..++.+|.+.|++++|++.|+++++. .|+.......++.+ ....|++++|++.++
T Consensus 76 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 76 GYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888888888888888876 34443333333333 334577888888887
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.98 E-value=7.7e-05 Score=65.38 Aligned_cols=96 Identities=10% Similarity=-0.017 Sum_probs=72.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------
Q 004470 609 YNPLIKQHCLRNDMRTTAKIYKGMCAQGITP------D-----GNTYNILLQGHCKARNMKEAWFLHKEMVQK------- 670 (751)
Q Consensus 609 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p------~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 670 (751)
+......+...|++++|++.|++.++..... + ...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344445566666666666666666532110 2 237888899999999999999999999986
Q ss_pred CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 671 GFNLTTSSY----NALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 671 ~~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
++. +...| ...+.++...|++++|+..|+++++.
T Consensus 94 ~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 544 56688 89999999999999999999999873
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.3e-05 Score=82.57 Aligned_cols=97 Identities=9% Similarity=-0.051 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCC
Q 004470 643 TYNILLQGHCKARNMKEAWFLHKEMVQ-----KGFN-L-TTSSYNALIKGFLKRKKYLEARELFEEMRR-----GGLVAD 710 (751)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 710 (751)
+++.|...|...|++++|..+++++++ .|.. | ...+++.|+..|...|++++|+.+++++++ .| +..
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG-~~H 431 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG-PSH 431 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CCC
Confidence 345555555555555555555555443 1211 1 123455555555555555555555555543 12 111
Q ss_pred ---HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004470 711 ---REIYYFFVDINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 711 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
..+...+..++.+.|.+++|..+|.++.+.
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122334444555555555555555555543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=9.9e-06 Score=67.25 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHH
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVAD------REI 713 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~ 713 (751)
+...+..+...+...|++++|++.|+++++..+. +...+..++.++.+.|++++|++.++++++.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 4566777888888999999999999999887654 78888899999999999999999999998753 333 566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 004470 714 YYFFVDINFEEGNTEITLELCDA 736 (751)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~ 736 (751)
+..++.++...|+.++|++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHH
Confidence 77777778887877777655443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00013 Score=75.55 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 186 HVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 186 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
..+..++..+.+.|++++|+..|+++++. .+... . . .. .++..... +.+..+|+.+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~-------~---~-~~-------~~~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR-------A---A-AE-------DADGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH-------H---H-SC-------HHHHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc-------c---c-cC-------hHHHHHHH-HHHHHHHHHHHHH
Confidence 45778999999999999999999999873 11110 0 0 00 11111110 1145566777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 004470 266 LCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEA 345 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 345 (751)
|.+.|++++|+..+++..+... .+...|..+..+|...|++++|++.|++..+.. +.+...+..+...+...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766432 356677777777777777777777777776653 22455666666666666666665
Q ss_pred HH
Q 004470 346 ET 347 (751)
Q Consensus 346 ~~ 347 (751)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.88 E-value=6.4e-05 Score=62.89 Aligned_cols=80 Identities=15% Similarity=0.039 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004470 624 TTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMR 703 (751)
Q Consensus 624 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 703 (751)
+|++.|++.++.. +.+...+..+...|...|++++|+..++++++..+. +...|..++.+|...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677788887753 336777888888888889999999998888887554 67788888888888899999998888887
Q ss_pred HC
Q 004470 704 RG 705 (751)
Q Consensus 704 ~~ 705 (751)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 63
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00045 Score=75.67 Aligned_cols=156 Identities=8% Similarity=-0.076 Sum_probs=129.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004470 585 GMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRND----------MRTTAKIYKGMCAQGITPDGNTYNILLQGHCKA 654 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 654 (751)
...++|++.++++++.... +..+|+.-...+...|+ ++++++.++++++.. +-+..+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3456789999999987432 55667777777777777 999999999999864 33788898888889999
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------
Q 004470 655 R--NMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRK-KYLEARELFEEMRRGGLVADREIYYFFVDINFEE------- 724 (751)
Q Consensus 655 g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 724 (751)
| +++++++.++++++.++. +..+|+.-..++.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 9 779999999999999877 8999999999999999 9999999999999875 66888898888877763
Q ss_pred -------CChhHHHHHHHHHHHcCCCC
Q 004470 725 -------GNTEITLELCDAAIECYLVG 744 (751)
Q Consensus 725 -------g~~~~A~~~~~~~~~~~~~~ 744 (751)
+.+++|++.++++++..+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCC
Confidence 56799999999999876543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0004 Score=60.27 Aligned_cols=111 Identities=13% Similarity=0.008 Sum_probs=79.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 004470 585 GMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK----ARNMKEA 660 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A 660 (751)
++.++|.+.|++..+.| .|+.. +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777765 22332 5555656666777888888777754 56667777777776 6788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 004470 661 WFLHKEMVQKGFNLTTSSYNALIKGFLK----RKKYLEARELFEEMRRGG 706 (751)
Q Consensus 661 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 706 (751)
++.|++..+.| ++..+..|...|.. .+++++|.++|+++.+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888888765 56777778888877 778888888888888766
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00026 Score=55.86 Aligned_cols=83 Identities=16% Similarity=0.148 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 641 GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDI 720 (751)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (751)
...+..+...+...|++++|+..++++++..+. +...+..++..+.+.|++++|...++++.+.. +.+...+..++.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455667777778888888888888888776543 66777788888888888888888888887754 4566677777766
Q ss_pred HHhcC
Q 004470 721 NFEEG 725 (751)
Q Consensus 721 ~~~~g 725 (751)
+.+.|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 65543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.69 E-value=8.3e-05 Score=76.01 Aligned_cols=148 Identities=7% Similarity=-0.078 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 129 LEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
...+..++..+...|++++|...+.+++.....+.......-.......+ ...+|..++.+|.+.|++++|+..|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l-----~~~~~~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV-----KNPCHLNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHH-----HTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHH-----HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45577788888999999999999999887541100000000000000000 0125666777777777777777777
Q ss_pred HHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHh
Q 004470 209 EKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHC-LCRFGKIKEAHLLLLQMEL 284 (751)
Q Consensus 209 ~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~ 284 (751)
+++++. .|+.......++..+...|++++|+..|+++.+..+. +..++..|... ....+..+++..+|..|..
T Consensus 254 ~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 254 NIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 777765 4544433344444444566677777777666665443 34444444443 2233455555555555543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00023 Score=76.07 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=78.7
Q ss_pred HhcCChhHHHHHHHHHHHc---CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEK---GLKPN----AATYNPLIKQHCLRNDMRTTAKIYKGMCA-----QGI-TPD-GNTYNIL 647 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~-~~~~~~l 647 (751)
...|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|..++++.++ .|. .|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456666666666655532 11111 24566666667777777777766666554 221 122 4557888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-----CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 648 LQGHCKARNMKEAWFLHKEMVQ-----KGFNL--TTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~~~~-----~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
...|...|++++|..+++++++ .|... ...+...+..++...|++++|..+|.++.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888765 34331 123455677777788888888888888876
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=8.5e-05 Score=64.94 Aligned_cols=87 Identities=7% Similarity=-0.056 Sum_probs=59.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 617 CLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNM----------KEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
.+.+.+++|.+.++..++.. +.+...|..+..++...+++ ++|+..|+++++.++. +..+|..++.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34556777777777777743 23566777777777776654 4777777777776555 666777777777
Q ss_pred HhcC-----------CHHHHHHHHHHHHHC
Q 004470 687 LKRK-----------KYLEARELFEEMRRG 705 (751)
Q Consensus 687 ~~~g-----------~~~~A~~~~~~~~~~ 705 (751)
...| ++++|++.|+++++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 7653 677777777777764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00015 Score=63.33 Aligned_cols=96 Identities=4% Similarity=-0.110 Sum_probs=79.3
Q ss_pred ChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCCh----------HHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhh
Q 004470 110 DYRLVLDFFDWACLRREPILEARCIVVQISVAAKDL----------KTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYK 179 (751)
Q Consensus 110 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (751)
.++.|+..|+.+....|.+.++++.++.++...+++ ++|+..++++++.+
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------------------- 76 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------------------- 76 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--------------------
Confidence 457889999999989999999999999999988765 48888888888766
Q ss_pred cCCCChhhHHHHHHHHHhcC-----------ChhHHHHHHHHHHhCCCccCHHhHHHHHHH
Q 004470 180 DWGSDPHVFDIFFQVLVEAR-----------KLNEARKLFEKLLNYGLVISVDSCNLFLSR 229 (751)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 229 (751)
|..+.+|..|+.+|...| ++++|++.|+++++. .|+...|...+..
T Consensus 77 --P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 77 --PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred --cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 778889999999999875 899999999999887 6776655544443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00039 Score=57.95 Aligned_cols=80 Identities=9% Similarity=-0.009 Sum_probs=71.1
Q ss_pred HHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHH
Q 004470 113 LVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFF 192 (751)
Q Consensus 113 ~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 192 (751)
.|+..|+.+....|.+..++..++.++...|++++|...+++++... |.++.++..++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~~~~~la 60 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD----------------------PTYSVAWKWLG 60 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC----------------------CCcHHHHHHHH
Confidence 46778888888888889999999999999999999999999988765 66677899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 004470 193 QVLVEARKLNEARKLFEKLLNY 214 (751)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~~ 214 (751)
.+|...|++++|...|+++++.
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 61 KTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999875
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.55 E-value=5.4e-05 Score=62.62 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 129 LEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
..++..++..+...|++++|...++++++.. |.++.++..++.+|.+.|++++|++.|
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~ 61 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ----------------------PQNPVGYSNKAMALIKLGEYTQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------CCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3455666666667777777777777666543 455666667777777777777777777
Q ss_pred HHHHhC
Q 004470 209 EKLLNY 214 (751)
Q Consensus 209 ~~~~~~ 214 (751)
+++++.
T Consensus 62 ~~al~~ 67 (111)
T 2l6j_A 62 QQGLRY 67 (111)
T ss_dssp HHHHTS
T ss_pred HHHHHh
Confidence 777665
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00047 Score=55.83 Aligned_cols=66 Identities=23% Similarity=0.172 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 639 PDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 639 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
.+...+..+...|...|++++|+..|+++++.++. +...|..++.+|...|++++|++.++++++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35777888888888999999999999998887655 6778888899999999999999999888763
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00059 Score=53.71 Aligned_cols=82 Identities=10% Similarity=0.030 Sum_probs=51.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHH
Q 004470 184 DPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMI 263 (751)
Q Consensus 184 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 263 (751)
++.++..++..+...|++++|+..|+++++. .|+.......++.++...|++++|...|+++.+..+. +..++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 3456778888888888888888888888775 3444333334444444556666666666666665433 445555555
Q ss_pred HHHHh
Q 004470 264 HCLCR 268 (751)
Q Consensus 264 ~~~~~ 268 (751)
..+.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00072 Score=54.71 Aligned_cols=64 Identities=11% Similarity=0.075 Sum_probs=37.0
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 605 NAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 605 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
+...+..+...|...|++++|++.|+++++.+ +.+...|..+..+|...|++++|++.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555666666666666666666666542 12344555666666666666666666666554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00057 Score=55.00 Aligned_cols=84 Identities=8% Similarity=0.026 Sum_probs=52.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 647 LLQGHCKARNMKEAWFLHKEMVQKGFNLTTS-SYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG 725 (751)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (751)
....+.+.|++++|+..++++++..+. +.. .+..++.+|...|++++|++.|+++++.. +.+...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence 345566777777777777777776443 556 77777777777777777777777777653 223333311 4
Q ss_pred ChhHHHHHHHHHHHc
Q 004470 726 NTEITLELCDAAIEC 740 (751)
Q Consensus 726 ~~~~A~~~~~~~~~~ 740 (751)
.+.+|...++++...
T Consensus 76 ~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 76 MVMDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHHHHHCCTTHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 455555555554443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00099 Score=69.87 Aligned_cols=87 Identities=6% Similarity=-0.052 Sum_probs=59.5
Q ss_pred HcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-C-CHHHHHHHH
Q 004470 618 LRNDMRTTAKIYKGMCA---QGITPD----GNTYNILLQGHCKARNMKEAWFLHKEMVQ-----KGFN-L-TTSSYNALI 683 (751)
Q Consensus 618 ~~g~~~~A~~~~~~m~~---~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~~~~~~l~ 683 (751)
..|++++|..++++.++ .-+.|+ ..+++.|...|...|++++|+.+++++++ .|.. | ...+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 56778888888877765 112222 45577777888888888888888877765 2322 1 134677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004470 684 KGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~ 704 (751)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 778888888888888887777
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0049 Score=48.80 Aligned_cols=67 Identities=7% Similarity=-0.039 Sum_probs=40.4
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChh
Q 004470 126 EPILEARCIVVQISVAAKD---LKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLN 202 (751)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~---~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 202 (751)
|.+...+...+..+...++ .++|..+++++++.+ |.++.+...|+..+.+.|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d----------------------p~~~rA~~~lg~~~~~~g~y~ 60 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE----------------------PYNEAALSLIANDHFISFRFQ 60 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC----------------------cCCHHHHHHHHHHHHHcCCHH
Confidence 3445555555555544333 466666666666554 556666666666666666666
Q ss_pred HHHHHHHHHHhC
Q 004470 203 EARKLFEKLLNY 214 (751)
Q Consensus 203 ~A~~~~~~~~~~ 214 (751)
+|+..++++++.
T Consensus 61 ~Ai~~w~~~l~~ 72 (93)
T 3bee_A 61 EAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhh
Confidence 666666666655
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0032 Score=66.10 Aligned_cols=94 Identities=7% Similarity=-0.035 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-C-CH
Q 004470 611 PLIKQHCLRNDMRTTAKIYKGMCAQG---ITPD----GNTYNILLQGHCKARNMKEAWFLHKEMVQ-----KGFN-L-TT 676 (751)
Q Consensus 611 ~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~ 676 (751)
..+..+..+|++++|.+++++.++.. +.|+ ..+++.|+..|...|++++|+.+++++++ .|.. | ..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34455667788888888888877521 2222 45677788888888888888888887765 2322 1 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 677 SSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 677 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.+++.|+..|...|++++|+.+++++++
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4677888888888888888888888887
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.002 Score=51.72 Aligned_cols=85 Identities=5% Similarity=0.027 Sum_probs=60.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 134 IVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPH-VFDIFFQVLVEARKLNEARKLFEKLL 212 (751)
Q Consensus 134 ~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 212 (751)
..+..+...|++++|...++++++.. |.++. ++..++.+|...|++++|++.|++++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~----------------------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE----------------------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC----------------------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC----------------------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777888888888888887654 56677 88888888999999999999999888
Q ss_pred hCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhc
Q 004470 213 NYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPEL 250 (751)
Q Consensus 213 ~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~ 250 (751)
+. .|+...... .+.+.++...|++....
T Consensus 63 ~~--~p~~~~~~~--------~~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 63 EL--NPDSPALQA--------RKMVMDILNFYNKDMYN 90 (99)
T ss_dssp HH--CTTSTHHHH--------HHHHHHHHHHHCCTTHH
T ss_pred hc--CCCcHHHHH--------HHHHHHHHHHHHHHhcc
Confidence 77 344332110 03455666666666544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0052 Score=52.98 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 622 MRTTAKIYKGMCAQGITPDGNTYNILLQGHCKAR---NMKEAWFLHKEMVQKG-FNLTTSSYNALIKGFLKRKKYLEARE 697 (751)
Q Consensus 622 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~ 697 (751)
...+.+.|.+..+.|. ++..+...+..++++.+ +.++++.++++..+.+ +.-+...+-.+.-++.+.|++++|++
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4555666666655553 56666666677777766 5557777777777654 11134455566666777777777777
Q ss_pred HHHHHHHC
Q 004470 698 LFEEMRRG 705 (751)
Q Consensus 698 ~~~~~~~~ 705 (751)
+++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0026 Score=66.65 Aligned_cols=87 Identities=8% Similarity=-0.081 Sum_probs=65.5
Q ss_pred hcCChhHHHHHHHHHHHc---CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHH
Q 004470 583 MSGMIEDGEKLLKWMLEK---GLKPN----AATYNPLIKQHCLRNDMRTTAKIYKGMCA-----QGI-TPD-GNTYNILL 648 (751)
Q Consensus 583 ~~g~~~~A~~l~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~-~~~~~~li 648 (751)
..|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|..+++++++ .|. .|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 567889999988887753 12232 35678888888889999999999888775 231 233 45588888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004470 649 QGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~ 669 (751)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 889999999999998888877
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.029 Score=56.35 Aligned_cols=72 Identities=13% Similarity=-0.034 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 004470 255 NTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYN 330 (751)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 330 (751)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...||.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 67777777777777788888888888877765 67777777777777788888888888887776 34544543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0046 Score=48.96 Aligned_cols=70 Identities=9% Similarity=-0.008 Sum_probs=57.4
Q ss_pred CCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCC
Q 004470 182 GSDPHVFDIFFQVLVEARK---LNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGIC 253 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~ 253 (751)
|.++.++..++.++...+. .++|..+++++++. .|+......+++......|++++|+..|+++.+..+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6778888889999875554 78999999999987 7888888888888877888888888888888877554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0094 Score=62.51 Aligned_cols=92 Identities=5% Similarity=-0.141 Sum_probs=74.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc---CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCC-HHH
Q 004470 578 MNGFCMSGMIEDGEKLLKWMLEK---GLKPN----AATYNPLIKQHCLRNDMRTTAKIYKGMCA-----QG-ITPD-GNT 643 (751)
Q Consensus 578 i~~~~~~g~~~~A~~l~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~~ 643 (751)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.+...|...|++++|+.+++++++ .| -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 56677889999999999999864 12333 35788899999999999999999998876 22 1232 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQ 669 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~ 669 (751)
++.|...|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 89999999999999999999999987
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.036 Score=55.62 Aligned_cols=142 Identities=11% Similarity=0.074 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHH--hcC---ChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHH---cC--CHHHHH---HHHHHHH
Q 004470 568 QPSVVTFNVLMNGFC--MSG---MIEDGEKLLKWMLEKGLKPN-AATYNPLIKQHCL---RN--DMRTTA---KIYKGMC 633 (751)
Q Consensus 568 ~p~~~~~~~li~~~~--~~g---~~~~A~~l~~~~~~~g~~p~-~~~~~~l~~~~~~---~g--~~~~A~---~~~~~m~ 633 (751)
+.+...|...+.+.. ..+ ...+|..+|++.++. .|+ ...|..+..+|.. .+ ...... +.++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 556666666665543 222 346777788877775 444 3444444444431 11 111111 1122111
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004470 634 AQ-GITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADRE 712 (751)
Q Consensus 634 ~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 712 (751)
.. ..+.+..+|..+...+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.++++... .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 11 113356666666666666677777777777777664 46666666677777777777777777777664 45555
Q ss_pred HHH
Q 004470 713 IYY 715 (751)
Q Consensus 713 ~~~ 715 (751)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.22 Score=57.22 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 505 NSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS 584 (751)
Q Consensus 505 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 584 (751)
..++..+.+.|..++|.++.++.. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 455555666666666665442110 0122234567777776664322 3556677777777777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 585 GMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 585 g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
|+++.|++.|.++.. |..+...|...|+.+...++-+....
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777765532 23334444445555544444443333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.027 Score=45.57 Aligned_cols=73 Identities=7% Similarity=-0.084 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKG------FNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREI 713 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 713 (751)
+..-+..++..+.+.|+++.|...++++++.- -.+...++..++.++.+.|++++|+.+++++++.. |.+...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHH
Confidence 45556678888999999999999999988741 12356788899999999999999999999998853 334443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.34 Score=46.58 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc-CCH
Q 004470 272 IKEAHLLLLQMELRGCSPD---VVSFSTIINGYCYL-----GELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKT-SKV 342 (751)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~ 342 (751)
..+|..++++..+.. |+ -..|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 456666777766543 44 45677777777774 78888888888887764322467777777777774 778
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHH
Q 004470 343 VEAETILREMMNQGIV--PDNVIYT 365 (751)
Q Consensus 343 ~~A~~~~~~m~~~g~~--p~~~~~~ 365 (751)
+++.+.+++.+..... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888887776544 4444333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.45 Score=39.37 Aligned_cols=139 Identities=15% Similarity=0.062 Sum_probs=89.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004470 583 MSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWF 662 (751)
Q Consensus 583 ~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 662 (751)
-.|..++..++..+.... .+..-||.++--....-+-+-..++++..=+ --| ...+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHH
Confidence 356667777766666653 2444555555444444444444444444322 111 123455555544
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 663 LHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 663 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
.+-.+ + .+....+..++.+..+|+-+.-.+++..++.. -+|+++....++.+|.+.|+..+|.+++.++.++|+
T Consensus 83 C~~~~---n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh---c--chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 44333 1 14456667778888899999988888886553 478899999999999999999999999999999986
Q ss_pred C
Q 004470 743 V 743 (751)
Q Consensus 743 ~ 743 (751)
.
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.55 Score=53.81 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=25.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 512 CKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDML 563 (751)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 563 (751)
...|++++|.++.+. ..+...|..+...+.+.++++.|.+.|..+.
T Consensus 663 l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345566666555432 2345566666666666666666666666543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.036 Score=47.74 Aligned_cols=94 Identities=11% Similarity=-0.012 Sum_probs=70.7
Q ss_pred HHHHHhhhhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHH
Q 004470 115 LDFFDWACLRREPILEARCIVVQISVAAK---DLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIF 191 (751)
Q Consensus 115 l~~f~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 191 (751)
.+.|.-.....+.+.++.+..+..|.+++ +.+++..+|+.+++.+. |. .+...+..|
T Consensus 18 ~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~-----p~---------------~~rd~lY~L 77 (152)
T 1pc2_A 18 EKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS-----KE---------------EQRDYVFYL 77 (152)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-----HH---------------HHHHHHHHH
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-----cc---------------chHHHHHHH
Confidence 34455555556788999999999999999 66699999999876430 00 123466789
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH
Q 004470 192 FQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRL 230 (751)
Q Consensus 192 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l 230 (751)
+-+|.+.|++++|.+.++.+++. .|+..-...+...+
T Consensus 78 Av~~~kl~~Y~~A~~y~~~lL~i--eP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 78 AVGNYRLKEYEKALKYVRGLLQT--EPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 99999999999999999999997 78876555554433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.065 Score=51.52 Aligned_cols=106 Identities=9% Similarity=0.037 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 004470 622 MRTTAKIYKGMCAQGITPD---GNTYNILLQGHCKA-----RNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKR-KKY 692 (751)
Q Consensus 622 ~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~ 692 (751)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|+++++.++.-+..++..+++.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777773 455 55677788878774 88888888888888876543467777788888774 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 693 LEARELFEEMRRGGLV--ADREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 693 ~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
++|.+.+++.+..... |+....+ .+..++|..+++++
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan--------~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV--------ILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH--------HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH--------HHHHHHHHHHHHHh
Confidence 8888888888886544 4433332 23445666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.036 Score=45.87 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHH
Q 004470 658 KEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLE---ARELFEEMRRGGLVA--DREIYYFFVDINFEEGNTEITLE 732 (751)
Q Consensus 658 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 732 (751)
..+.+-|.+....|. ++..+-..+++++.++.+..+ ++.+++...+.+ .| .....+.++-++++.|++++|++
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444333 455555566666666555444 555666555543 12 23444455556666666666666
Q ss_pred HHHHHHHcCC
Q 004470 733 LCDAAIECYL 742 (751)
Q Consensus 733 ~~~~~~~~~~ 742 (751)
+++.+++..+
T Consensus 96 ~~~~lL~~eP 105 (126)
T 1nzn_A 96 YVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCC
Confidence 6666665543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.95 E-value=3.1 Score=47.20 Aligned_cols=512 Identities=11% Similarity=0.021 Sum_probs=251.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCccCHHhHHHHHHHHHhCCCCHHHHH-HHHHhch----hcCCCcC-HH
Q 004470 185 PHVFDIFFQVLVEARKLNEARKLFEKLLN-YGLVISVDSCNLFLSRLSNTCDGLRMVV-KSFTEFP----ELGICWN-TA 257 (751)
Q Consensus 185 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~ll~~l~~~~~~~~~a~-~~~~~~~----~~~~~~~-~~ 257 (751)
..+-.+..++|...|.+++|+.+--.+-. ..+.-+..-...+++.+.. .+-+.. +-++.-. ...+.|. ..
T Consensus 70 ~laalvaSkvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid---~y~~~~~~~~~~~~~~~~~~~id~rL~~ 146 (963)
T 4ady_A 70 EMAALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIE---MYVQEASKQYTKDEQFYTKDIIDPKLTS 146 (963)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHH---HHHHHHHHHHHHCTTGGGSSCSCHHHHH
T ss_pred HHHHHHHHHHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHH---HHHHHHhhccccccccccccccCHHHHH
Confidence 34556677889999999999987655432 1222232233444444431 110000 0111000 0012222 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCC-CHHHHHHHH----HHHHhcCCH----HHHHHHHHHHHH
Q 004470 258 SYNIMIHCLCRFGKIKEAHLLLLQMELRG---------CSP-DVVSFSTII----NGYCYLGEL----QRVLKLIEEMQI 319 (751)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p-~~~~~~~li----~~~~~~g~~----~~A~~~~~~m~~ 319 (751)
....++.-+.+.|...+|..+.-+..+.. +.. +...|..++ ...-..-.. .+.+++.-++..
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~ 226 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLM 226 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Confidence 34556777788888888887765543211 000 112333332 222222222 233333333322
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------
Q 004470 320 KGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEM------------ 387 (751)
Q Consensus 320 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------------ 387 (751)
. . +..-|..++++..+.++.+.+.++|..+.+. .|...--.+.--+.+.++-.--.++.+.+
T Consensus 227 k-~--~~~dy~~a~~~ai~LnD~~li~~if~~l~~~---~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~I 300 (963)
T 4ady_A 227 N-M--PNCDYLTLNKVVVNLNDAGLALQLFKKLKEE---NDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPALLNI 300 (963)
T ss_dssp H-S--SSCCHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred h-C--CchhHHHHHHHHHHcCCHHHHHHHHHHHHhc---ccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHHHHHH
Confidence 2 1 1235788888999999999999999998752 24333222333333333211111111111
Q ss_pred -------------HhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHH----------------HHHH
Q 004470 388 -------------RGLNIIPDLLTYTAIICGFCL--TGKMVEAEKLFHEMLGRGLEPDEI----------------VYTA 436 (751)
Q Consensus 388 -------------~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~----------------~~~~ 436 (751)
....-..|..+.+.+ ..... ......|..+..-....|...|.. .-..
T Consensus 301 Lsg~~~~~Lyl~FL~~~n~~d~~~l~~~-K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~ 379 (963)
T 4ady_A 301 LSGLPTCDYYNTFLLNNKNIDIGLLNKS-KSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTAT 379 (963)
T ss_dssp TTSHHHHHHHHHHHHHHCCCCHHHHHHH-HHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHH
T ss_pred hCCCChHHHHHHHHHhccccchhhHHHH-HhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHH
Confidence 111001121111111 00000 011222333333333344333321 1112
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHH
Q 004470 437 LIDGYCKAGGMKKAFSLHNNMVHMR--LTPNVVTYTALADGLCKSGELETANELLHEMCRKGL-------QLNIYTYNSI 507 (751)
Q Consensus 437 li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------~~~~~~~~~l 507 (751)
..-+....|+.++++.++......+ -.+.+..-..+.-+....|..+++..++.......- .+....-.++
T Consensus 380 aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 380 ASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred HHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 2234456777788887777665421 112233334445556666766678887777665421 0111222333
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HH
Q 004470 508 VNGLCKAGN-ILQAVKLMEDMEVAGFHPDTFTYT--TIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNG--FC 582 (751)
Q Consensus 508 i~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~ 582 (751)
.-++.-.|. -+++.+.+..+.... .+...... ++...+.-.|+.+....++..+.+.. +......++-+ +.
T Consensus 460 GLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 460 GIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 333333342 245666666665532 11111122 23334556788888888888777642 33344444444 44
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHh-hHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004470 583 MSGMIEDGEKLLKWMLEKGLKPNAA-TYN---PLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMK 658 (751)
Q Consensus 583 ~~g~~~~A~~l~~~~~~~g~~p~~~-~~~---~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 658 (751)
..|+.+.+..+.+.+... .+.. -|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCS
T ss_pred hCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHH
Confidence 678999999888888763 2332 222 34556788999888888999888742 223333334444555567777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 659 EAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKY-LEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 659 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
.+.++++.+.+.+ .|....-..+.-+....|.. .+|+..+..+.. .+|..+....+
T Consensus 612 ~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai 668 (963)
T 4ady_A 612 TVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAM 668 (963)
T ss_dssp SHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHH
Confidence 7777776665543 33333333444444445543 678888888875 45655554333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.061 Score=43.43 Aligned_cols=79 Identities=13% Similarity=0.041 Sum_probs=60.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 004470 128 ILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKL 207 (751)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 207 (751)
+...++.++..+...+++..|...++.+++....+.. .-...+.++..|+.+|.+.|++++|+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~---------------~~~~~~~i~~~L~~~~~~~g~~~~A~~~ 68 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI---------------STIDKVSVLDYLSYAVYQQGDLDKALLL 68 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------------CSSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC---------------CcccHHHHHHHHHHHHHHccCHHHHHHH
Confidence 4567889999999999999999999998764200000 0023456889999999999999999999
Q ss_pred HHHHHhCCCccCHHhH
Q 004470 208 FEKLLNYGLVISVDSC 223 (751)
Q Consensus 208 ~~~~~~~g~~p~~~~~ 223 (751)
++++++. .|+....
T Consensus 69 ~~~al~l--~P~~~~~ 82 (104)
T 2v5f_A 69 TKKLLEL--DPEHQRA 82 (104)
T ss_dssp HHHHHHH--CTTCHHH
T ss_pred HHHHHhc--CCCCHHH
Confidence 9999987 6766443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.05 E-value=6.2 Score=44.83 Aligned_cols=261 Identities=13% Similarity=0.059 Sum_probs=117.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-------CCCHHHHHHHHH
Q 004470 404 CGFCLTGKMVEAEKLFHEMLGRGLEPDE--IVYTALIDGYCKAGGMKKAFSLHNNMVHMRL-------TPNVVTYTALAD 474 (751)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~li~ 474 (751)
-+....|+.++++.+++..+..+-..+. ..-..+.-+....|..+++..++...+...- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3455566777776666665542111122 2223333444555555566666655543211 011222223333
Q ss_pred HHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004470 475 GLCKSGE-LETANELLHEMCRKGLQLNIYTYN--SIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGE 551 (751)
Q Consensus 475 ~~~~~g~-~~~A~~l~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 551 (751)
++.-.|. -+++.+.+..+....-. ...... ++...++-.|+.+....++..+.+.. ..+..-...+.-++.-.|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 3333332 23445555555443211 111112 22233445566666666666655431 1122222223333445667
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 004470 552 MVKAHELLRDMLDKGLQPSVVTFN--VLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIY 629 (751)
Q Consensus 552 ~~~A~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 629 (751)
.+.+..+.+.+.... .|....-. .+.-+|+..|+.....+++..+.+. ...+..-...+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 777766666666531 22222111 2233455666766555577666653 1222222233333444456655566666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 004470 630 KGMCAQGITPDGNTYNILLQGHCKARNM-KEAWFLHKEMVQ 669 (751)
Q Consensus 630 ~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~ 669 (751)
+.+.+.+ .|....-..+.-+....|+. .+|+.++..+..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 5555433 33333333444444444443 566667776653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.87 E-value=1.4 Score=36.51 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 004470 400 TAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMR 461 (751)
Q Consensus 400 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 461 (751)
+..++.+...|+-++-.+++.+++.. .+|++...-.+..+|.+.|+..+|.+++.++.+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33344444444544444444443321 23444444444455555555555555554444444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.78 E-value=1.5 Score=38.65 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=21.6
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 547 CKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWM 597 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 597 (751)
...|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555544433 24444555555555555555555555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.67 E-value=1.1 Score=39.55 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=20.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004470 513 KAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRD 561 (751)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 561 (751)
..|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344444444444332 2344444454444445555444444444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.4 Score=40.66 Aligned_cols=106 Identities=12% Similarity=0.016 Sum_probs=66.3
Q ss_pred CCChhhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCccCHH----hHHHHH--HHHHhCCCCHHHHHHHHHhchh
Q 004470 182 GSDPHVFDIFFQVLVEARKL------NEARKLFEKLLNYGLVISVD----SCNLFL--SRLSNTCDGLRMVVKSFTEFPE 249 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~p~~~----~~~~ll--~~l~~~~~~~~~a~~~~~~~~~ 249 (751)
|.++.+|-..+..+-+.|++ ++-.++|+++... +.|+.. .|-.+. -+.+...++.++|+++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 67888888888888888998 8888999999875 344421 111111 1111233566777777776655
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 004470 250 LGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSP 289 (751)
Q Consensus 250 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (751)
..-.. ...|..-...-.++|++.+|.+++......+..|
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 43222 5556666666666777777777776666655443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.39 Score=39.66 Aligned_cols=94 Identities=9% Similarity=-0.080 Sum_probs=69.2
Q ss_pred HHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHH---HHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHH
Q 004470 114 VLDFFDWACLRREPILEARCIVVQISVAAKDLKT---AHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDI 190 (751)
Q Consensus 114 al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 190 (751)
+.+.|.-.....+.+..+.+..+..|.+++...+ +..+|+.+++.+. |. ..-.....
T Consensus 20 ~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-----p~---------------~~Rd~lY~ 79 (126)
T 1nzn_A 20 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-----KE---------------EQRDYVFY 79 (126)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-----HH---------------HHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-----cc---------------hHHHHHHH
Confidence 3444555555566889999999999999998876 8888888776530 10 11134677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHH
Q 004470 191 FFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSR 229 (751)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 229 (751)
|+-++.+.|++++|...++.+++. .|+..-...+...
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~~--eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQT--EPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 999999999999999999999987 7877655544433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.29 E-value=1.8e-05 Score=80.51 Aligned_cols=206 Identities=12% Similarity=0.097 Sum_probs=133.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNI 261 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (751)
...|.+|..|+++..+.|++.+|++-|-++. .|+. |.-++.... +.|.+++-.+++..+.+..- ++..=+.
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~----Dps~--y~eVi~~A~-~~~~~edLv~yL~MaRk~~k--e~~IDte 121 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSS--YMEVVQAAN-TSGNWEELVKYLQMARKKAR--ESYVETE 121 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCCS----CCCS--SSHHHHHTT-TSSCCTTHHHHHHTTSTTCC--STTTTHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhCC----ChHH--HHHHHHHHH-hCCCHHHHHHHHHHHHHHhc--ccccHHH
Confidence 4578899999999999999999998776442 3443 344555443 67999999998887766533 4455578
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------------
Q 004470 262 MIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKG-------------------- 321 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------------- 321 (751)
|+-+|+|.|+..+-.+++ . .||+.-...+.+-|...|.++.|.-+|..+....
T Consensus 122 Li~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 122 LIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT
T ss_pred HHHHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999976654443 1 2676667788888999999988887776543211
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004470 322 LKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTA 401 (751)
Q Consensus 322 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 401 (751)
-..++.||..+-.+|...+++.-|...=-.++-. +|. ...++..|-..|.+++-+.+++.-.... ......|+-
T Consensus 195 KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTE 268 (624)
T 3lvg_A 195 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---ADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 268 (624)
T ss_dssp TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHH
T ss_pred hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHH
Confidence 0124556666666666666665554433333321 111 1234555666677777777776655322 235566666
Q ss_pred HHHHHHhc
Q 004470 402 IICGFCLT 409 (751)
Q Consensus 402 li~~~~~~ 409 (751)
|.-.|++-
T Consensus 269 LaILYsKY 276 (624)
T 3lvg_A 269 LAILYSKF 276 (624)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHhc
Confidence 66666654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.28 Score=40.68 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 672 FNLTTSSYNALIKGFLKRKKY---LEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 672 ~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
..|++.+--.+++++.++.+. .+++.+++...+.+..-..+.++.++-++++.|++++|+++++.+++..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 344555555555666555433 3455555555554311123444555555666666666666666655554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.89 Score=38.26 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 638 TPDGNTYNILLQGHCKARN---MKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 638 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
.|+..+--.+..++.+..+ ..+++.++++....++.-.....-.|+-++.+.|++++|+++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555555566665553 3345666666665433223334445555666666666666666666664
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.39 E-value=0.0004 Score=70.83 Aligned_cols=420 Identities=11% Similarity=0.049 Sum_probs=230.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 129 LEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
...|..++.+..+.|.+++-...|..+.+. ...|.+=+.|+-+|++.+++.+-.+++
T Consensus 83 ps~y~eVi~~A~~~~~~edLv~yL~MaRk~-----------------------~ke~~IDteLi~ayAk~~rL~elEefl 139 (624)
T 3lvg_A 83 PSSYMEVVQAANTSGNWEELVKYLQMARKK-----------------------ARESYVETELIFALAKTNRLAELEEFI 139 (624)
T ss_dssp CCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-----------------------CCSTTTTHHHHHHHHTSCSSSTTTSTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------------------hcccccHHHHHHHHHhhCcHHHHHHHH
Confidence 344556677777788888877777665443 244555578889999999877655443
Q ss_pred HHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004470 209 EKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCS 288 (751)
Q Consensus 209 ~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (751)
. .|++.-...+...++ ..|.++.|.-+|..+.. |..|...+.+.|++..|.+.-++.
T Consensus 140 ~-------~~N~A~iq~VGDrcf-~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaArKA------ 196 (624)
T 3lvg_A 140 N-------GPNNAHIQQVGDRCY-DEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------ 196 (624)
T ss_dssp S-------CCSSSCTHHHHHHHH-HSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTTC------
T ss_pred c-------CCCcccHHHHHHHHH-HccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 3 466666667777777 56888877777765543 345566677888888877644322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 289 PDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLI 368 (751)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 368 (751)
-++.||..+-.+|...+++.-|.-.--.+.- .+.-...++..|-..|.+++-+.+++.-+... ......|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 3567888888899998888876544444332 22233456677888899998888888876431 34667788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCCC
Q 004470 369 DGFCKMGNVAAAYRLFDEMRGL-NIIP------DLLTYTAIICGFCLTGKMVEAEKLF-------------HEMLGRGLE 428 (751)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m~~~-~~~p------~~~~~~~li~~~~~~g~~~~A~~~~-------------~~m~~~~~~ 428 (751)
-.|+|- ++++..+.++..-.+ +++. ....|.-++-.|++-.+++.|.... .+.+.+ .
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--V 347 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--V 347 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--C
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--c
Confidence 888776 455555544432221 1111 2234666777777777777654321 111111 2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004470 429 PDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIV 508 (751)
Q Consensus 429 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li 508 (751)
.+...|-..|..|.... ...--+++.-+. ..+.++ ..++.+.+.|++.-+...+......+ +...-.++-
T Consensus 348 aN~EiyYKAi~FYL~e~-P~lL~DLL~vL~-prlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~N---~~aVNeAln 417 (624)
T 3lvg_A 348 ANVELYYRAIQFYLEFK-PLLLNDLLMVLS-PRLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLN 417 (624)
T ss_dssp SCSHHHHHHHHHHTTSC-CTTSHHHHHHHC-TTCCST-----TTHHHHHTTTCGGGGTGGGTSCCCSC---CHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-hHHHHHHHHhcc-ccCChH-----HHHHHHHhcCCchhhHHHHHHHHHhh---HHHHHHHHH
Confidence 34555555555554332 111111111111 011111 22333444444444443333332221 223333444
Q ss_pred HHHHHcCCHHHHHH------------HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004470 509 NGLCKAGNILQAVK------------LMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNV 576 (751)
Q Consensus 509 ~~~~~~g~~~~A~~------------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 576 (751)
+.|....+++.-.. +-.++.+ .+-...-..-...|.+.++|+++..+.++ .+ .|.-
T Consensus 418 ~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEk---HeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykD 485 (624)
T 3lvg_A 418 NLFITEEDYQALRTSIDAYDNFDNISLAQRLEK---HELIEFRRIAAYLFKGNNRWKQSVELCKK---DS------LYKD 485 (624)
T ss_dssp HHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHT---CSSHHHHHHHHHHHHTTCHHHHHSSCSST---TC------CTTG
T ss_pred HHHhhhhhHHHHHHHHHHhccccHHHHHHHHhh---CchHHHHHHHHHHHHhcccHHHHHHHHHh---cc------cHHH
Confidence 45555555443322 2223332 12233333444556677778777655432 11 1222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 004470 577 LMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKI 628 (751)
Q Consensus 577 li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 628 (751)
.|...+..|+.+-|.++++-..+.| +...|...+-.|...=+++-+.++
T Consensus 486 AietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 486 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp GGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 3444456777777888887777765 334444444444444445554443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.16 E-value=0.38 Score=40.80 Aligned_cols=112 Identities=9% Similarity=0.038 Sum_probs=70.3
Q ss_pred CCHhhHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCCCCHH----HHHHHHHH---HHhcCCHHHHHHHHHHHHHC
Q 004470 604 PNAATYNPLIKQHCLRNDM------RTTAKIYKGMCAQGITPDGN----TYNILLQG---HCKARNMKEAWFLHKEMVQK 670 (751)
Q Consensus 604 p~~~~~~~l~~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----~~~~li~~---~~~~g~~~~A~~~~~~~~~~ 670 (751)
-|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|-.+.-- +...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3666777777777777887 7777888887774 455421 12222111 12446778888888888765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 671 GFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFV 718 (751)
Q Consensus 671 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (751)
+-.- ...|...+.--.++|+.+.|.+++.+++..+ +.+.......+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~ 135 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIAL 135 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHH
Confidence 3332 6666666666677888888888888888765 33344444333
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.14 Score=44.42 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 709 ADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
.+.+..+.++.+|.+.|++++|+..++.+-.+.
T Consensus 120 ~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 120 SEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred chHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 345677778899999999999999888764443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.53 E-value=6 Score=47.06 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=88.3
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHH
Q 004470 181 WGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYN 260 (751)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (751)
|+.++..-.+++.+|...|++++|.+.|.++.. |+..+... .........+...... ...-..-|.
T Consensus 838 ~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l-----------~~~~~~~~~~~~~~~~--~~~l~~YY~ 903 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQ-----------FAVLREFQEIAEKYHH--QNLLSCYYL 903 (1139)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCS-----------CSSHHHHHHHHHTTTS--CCSSHHHHH
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchh-----------hhhhcccccccccccc--cccHHHHHH
Confidence 466777677888888889999999888887632 22221110 0011110011100000 011234577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004470 261 IMIHCLCRFGKIKEAHLLLLQMELRGCSPD----VVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLL 336 (751)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 336 (751)
.++..+-+.|.++.+.++-....+....-+ ...|..+...+...|++++|...+-.+.....+ ......|+..+
T Consensus 904 hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~l 981 (1139)
T 4fhn_B 904 HLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQL 981 (1139)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHH
Confidence 788888888888888887776554322112 125778888888889999888888877655332 34556666667
Q ss_pred HhcCCHHH
Q 004470 337 CKTSKVVE 344 (751)
Q Consensus 337 ~~~g~~~~ 344 (751)
|..|..++
T Consensus 982 ce~~~~~~ 989 (1139)
T 4fhn_B 982 TKQGKINQ 989 (1139)
T ss_dssp HHHCCHHH
T ss_pred HhCCChhh
Confidence 76665443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.30 E-value=1.1 Score=38.87 Aligned_cols=129 Identities=10% Similarity=-0.018 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchh-hhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004470 130 EARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASI-AFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLF 208 (751)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 208 (751)
-++..-+..+...+.|+.|+.+..-++.....+... +.. ....++..++.++...|.+..|...|
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~--------------~~~~~l~~ladalf~~~eyrrA~~~y 86 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPP--------------QKYQLLVYHADSLFHDKEYRNAVSKY 86 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHH--------------HHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 345555667778899999988887766542111000 000 01236788999999999999999999
Q ss_pred HHHHhCCC-ccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004470 209 EKLLNYGL-VISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELR 285 (751)
Q Consensus 209 ~~~~~~g~-~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (751)
++++...- -+...+....++. ...... ......++...-.+..+|.+.|++++|+.+++.+..+
T Consensus 87 ~qALq~~k~l~k~~s~~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 87 TMALQQKKALSKTSKVRPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHhcCCCccccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 99864311 1111110000000 000000 0011224555556888999999999999999886543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.17 E-value=24 Score=38.38 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=36.1
Q ss_pred cCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 004470 108 RSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKP 159 (751)
Q Consensus 108 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~ 159 (751)
+.++...+.||.- .|.+....|..+..+...|+-.+|......+...+
T Consensus 85 ~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 85 REDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp TTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred CCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 5667666665442 46678888888888888999888888888877665
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.11 E-value=2.7 Score=46.76 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=23.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 687 LKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
...|+++-|+++.+++.... |.+..+|..|+.+|...|+++.|+=.++.+
T Consensus 348 l~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34445555555555544431 334444555555555555555554444433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.10 E-value=4.6 Score=44.88 Aligned_cols=126 Identities=10% Similarity=0.011 Sum_probs=72.4
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHC------CCCCCcc------
Q 004470 262 MIHCLCRFGK-IKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGE-LQRVLKLIEEMQIK------GLKPNPY------ 327 (751)
Q Consensus 262 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~------g~~p~~~------ 327 (751)
|+..+...|+ ++.|..+|+++......-+......+|..+.+.++ --+|.+++.+..+. ..++...
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 3443344555 57788888888775422122222233333333332 22455555444321 1121111
Q ss_pred -----cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 328 -----TYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMR 388 (751)
Q Consensus 328 -----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 388 (751)
....-.+.+...|+++-|+++-++..... +-+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222455667888888888888877762 4456788888888888888888888877764
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.55 E-value=16 Score=35.59 Aligned_cols=21 Identities=19% Similarity=-0.010 Sum_probs=16.9
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 004470 720 INFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~ 740 (751)
.|.-.|+...|..+++...++
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 566789999999999887654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.47 E-value=6 Score=33.26 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 673 NLTTSSYNALIKGFLKRKKY---LEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 673 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
.|+..+--.+++++.++.+. .+++.+++...+.+..-..+..+.++-++++.|++++|+++++.+++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 45555555666666655533 34555666655533112334444555566666666666666666665543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.21 E-value=2.4 Score=43.43 Aligned_cols=78 Identities=6% Similarity=0.006 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR-----GGLVADREIYYFFV 718 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~ 718 (751)
...++..+...|+.++|+..+..+....+- +...|..++.+|.+.|+..+|++.|+++.+ .|+.|.+.+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 345667778889999999888888877544 788888999999999999999998888754 58888887765544
Q ss_pred HHHH
Q 004470 719 DINF 722 (751)
Q Consensus 719 ~~~~ 722 (751)
..+.
T Consensus 253 ~il~ 256 (388)
T 2ff4_A 253 RILR 256 (388)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 4443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.89 E-value=24 Score=36.65 Aligned_cols=50 Identities=14% Similarity=0.068 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 480 GELETANELLHEMCRK-----GLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEV 529 (751)
Q Consensus 480 g~~~~A~~l~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 529 (751)
|++++|++.+..+.+. +..........++..|...|+++...+.+.-+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677777766655542 2333455666777777777777777666665544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.73 E-value=19 Score=35.36 Aligned_cols=191 Identities=13% Similarity=0.071 Sum_probs=105.6
Q ss_pred cCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 004470 514 AGNILQAVKLMEDMEVAGFH----PDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIED 589 (751)
Q Consensus 514 ~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 589 (751)
.+++++.+.-++.-.+.|-. --...|.++..-|.+.+++++|.+++..-. ..+.+.|+...
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~s 73 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGS 73 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcch
Confidence 34556666666666665511 112456666677777777777777654432 23556677777
Q ss_pred HHHHH----HHHHHcCCCCCHhhHHHHHHHHHHcCCHH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcCCHH
Q 004470 590 GEKLL----KWMLEKGLKPNAATYNPLIKQHCLRNDMR-TTAKIYKGMCA----QG--ITPDGNTYNILLQGHCKARNMK 658 (751)
Q Consensus 590 A~~l~----~~~~~~g~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~m~~----~g--~~p~~~~~~~li~~~~~~g~~~ 658 (751)
|.++. +-..+.++++|......++..+.....-+ .=..+.+++++ .| ..-|+.....+...|.+.+++.
T Consensus 74 g~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 74 GGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 66655 34445577777777777777665444311 11223333332 12 2235666667777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHH
Q 004470 659 EAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYY-FFVDINFEEGNTEITLELCDAA 737 (751)
Q Consensus 659 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~ 737 (751)
+|...|= .|-.+++..+..++.-+...+. +.+...|. ..+-.|.-.|+...|..+++..
T Consensus 154 ~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~----------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f 213 (336)
T 3lpz_A 154 AAEKHLV----LGTKESPEVLARMEYEWYKQDE----------------SHTAPLYCARAVLPYLLVANVRAANTAYRIF 213 (336)
T ss_dssp HHHHHHT----TSCTTHHHHHHHHHHHHHHTSC----------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCchHHHHHHHHHHHHHhcC----------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7766552 2333233455444443333322 12222222 2334577788999999988777
Q ss_pred HH
Q 004470 738 IE 739 (751)
Q Consensus 738 ~~ 739 (751)
.+
T Consensus 214 ~~ 215 (336)
T 3lpz_A 214 TS 215 (336)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.59 E-value=19 Score=35.11 Aligned_cols=87 Identities=13% Similarity=0.097 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH--
Q 004470 482 LETANELLHEMCRKGLQL-NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHEL-- 558 (751)
Q Consensus 482 ~~~A~~l~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-- 558 (751)
+++.+.-++.-++.|--- -...|.++..-|.+++++++|++++..-. ..+.+.|+...|-++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHH
Confidence 444444444444444111 12356666666666666666666654322 234556666555543
Q ss_pred --HHHHHhCCCCCCHHHHHHHHHHHHh
Q 004470 559 --LRDMLDKGLQPSVVTFNVLMNGFCM 583 (751)
Q Consensus 559 --~~~~~~~~~~p~~~~~~~li~~~~~ 583 (751)
++-..+.+.+++......++..+..
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3333445666666666666655544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.41 E-value=3.3 Score=34.34 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 638 TPDGNTYNILLQGHCKARN---MKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 638 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
.|+..+--.+..++.+..+ ..+++.++++....++.-....+-.|+-++.+.|++++|++..+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4666666666777776664 3467778887776653323456667777888888888888888888874
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.87 E-value=28 Score=36.16 Aligned_cols=189 Identities=13% Similarity=0.135 Sum_probs=95.3
Q ss_pred cCChhHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----Hc
Q 004470 444 AGGMKKAFSLHNNMVHM-----RLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLC----KA 514 (751)
Q Consensus 444 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~----~~ 514 (751)
.|++++|++.+-.+.+. ...........++..+...|+++...+.+..+.+..-. -......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 36788888877665532 23445677888999999999999998888776554222 1222333333222 22
Q ss_pred CCHHHHHH--HHHHHHH--CC-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCC---HHHHHHHHHHH
Q 004470 515 GNILQAVK--LMEDMEV--AG-FHP---DTFTYTTIMDAYCKSGEMVKAHELLRDMLD--KGLQPS---VVTFNVLMNGF 581 (751)
Q Consensus 515 g~~~~A~~--~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~li~~~ 581 (751)
...+.... +.+.+.. .| +.. .......|...|...|++.+|.+++..+.. .|..+. ...+..-+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221111 1111100 01 001 112234455666666677777666666642 121111 22344455556
Q ss_pred HhcCChhHHHHHHHHHHHc----CCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEK----GLKPN--AATYNPLIKQHCLRNDMRTTAKIYKGMC 633 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 633 (751)
...+++..|..+++++... ...|+ ...+...+..+...+++.+|.+.|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6666666666666554321 11111 1234444555555666666655555544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.36 E-value=24 Score=34.75 Aligned_cols=189 Identities=13% Similarity=0.098 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHcCCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004470 482 LETANELLHEMCRKGLQ---L-NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHE 557 (751)
Q Consensus 482 ~~~A~~l~~~m~~~g~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 557 (751)
+++.++=++.-++.|-- - -..+|.++..-|.+++++++|++++..-. ..+.+.|+...|-+
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~D 76 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGD 76 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHH
Confidence 44445555555555421 1 12478888888999999999998875432 34677888877766
Q ss_pred HH----HHHHhCCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHH----HcC--CCCCHhhHHHHHHHHHHcCCHHHHH
Q 004470 558 LL----RDMLDKGLQPSVVTFNVLMNGFCMSGMIE-DGEKLLKWML----EKG--LKPNAATYNPLIKQHCLRNDMRTTA 626 (751)
Q Consensus 558 ~~----~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~l~~~~~----~~g--~~p~~~~~~~l~~~~~~~g~~~~A~ 626 (751)
+- +-+.+.++++|......++..+.....-+ +=.++.++++ +.| ..-|......+...|.+.+++.+|.
T Consensus 77 L~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae 156 (336)
T 3lpz_A 77 LAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAE 156 (336)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 55 44556788999999999998887655422 1233333333 223 3346677788888999999999988
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 627 KIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 627 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
..|- .|-.+....|..++.-+...+...++ +..+-..++ -|.-.++...|..+++...+
T Consensus 157 ~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 157 KHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 8772 23333345664444444433322211 222222333 45557899999888877664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.31 E-value=16 Score=43.37 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 329 YNSVVRLLCKTSKVVEAETILREMMNQGIVPDN----VIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIIC 404 (751)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 404 (751)
|..++..+-+.+.++.+.++-...++...+.+. ..|..+...+...|++++|...+-.+..... -......++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 444455555555555555554444332111111 1355566666666777776666666654332 2344555666
Q ss_pred HHHhcCCHH
Q 004470 405 GFCLTGKMV 413 (751)
Q Consensus 405 ~~~~~g~~~ 413 (751)
.+|..|..+
T Consensus 980 ~lce~~~~~ 988 (1139)
T 4fhn_B 980 QLTKQGKIN 988 (1139)
T ss_dssp HHHHHCCHH
T ss_pred HHHhCCChh
Confidence 666555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.99 E-value=4.8 Score=41.14 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHhh
Q 004470 540 TTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLE-----KGLKPNAAT 608 (751)
Q Consensus 540 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-----~g~~p~~~~ 608 (751)
..++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+.+.. .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345556666777777777777666543 44666777777777777777777777766543 266665543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=80.40 E-value=10 Score=35.83 Aligned_cols=117 Identities=13% Similarity=0.091 Sum_probs=79.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCC
Q 004470 614 KQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL--TTSSYNALIKGFLKRKK 691 (751)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 691 (751)
....+.|++++|++....-++.. +-|...-..|+..+|-.|+++.|.+-++...+..+.. ....|..+|.+-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~---- 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ---- 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHH----
Confidence 34568899999999999988864 4477777889999999999999999999988864331 1224444444321
Q ss_pred HHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHcC
Q 004470 692 YLEARELFEEMRRGGLV-----ADREIYYFFVDIN--FEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 692 ~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~ 741 (751)
.=.+...-+-. ........++.++ ...|+.++|.++-+++.+.-
T Consensus 80 ------~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 80 ------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp ------HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 11122221111 1233444555544 45699999999999998864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 751 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.003
Identities = 39/351 (11%), Positives = 106/351 (30%), Gaps = 25/351 (7%)
Query: 184 DPHVFDIFF---QVLVEARKLNEARKLFEKLLNYGLVISVDSCNL-FLSRLSNTCDGLRM 239
+P + + + R+L+ + I + S L N
Sbjct: 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTL------AIKQNPLLAEAYSNLGNVYKERGQ 82
Query: 240 VVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIIN 299
+ ++ + + + + +PD+ + +
Sbjct: 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142
Query: 300 GYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVP 359
K I+ ++++ + ++ A + + + P
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT--LDP 200
Query: 360 DNV-IYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKL 418
+ + Y L + + A + L+ + + + C + G + A
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA-VVHGNLACVYYEQGLIDLAIDT 259
Query: 419 FHEMLGRGLEPD-EIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLC 477
+ + L+P Y L + + G + +A +N + + T LA+
Sbjct: 260 YRRAI--ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN-LANIKR 316
Query: 478 KSGELETANELLHEMCRKGLQLN---IYTYNSIVNGLCKAGNILQAVKLME 525
+ G +E A + RK L++ ++++ + L + G + +A+ +
Sbjct: 317 EQGNIEEA----VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 751 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.22 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.18 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.16 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.13 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.11 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.06 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.01 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.0 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.74 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.63 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.63 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.58 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.56 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.56 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.51 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.48 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.46 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.46 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.45 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.34 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.32 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.31 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.22 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.2 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.11 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.09 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.06 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.05 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.0 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.0 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.97 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.96 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.81 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.72 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.66 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.65 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.63 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.62 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.59 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.5 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.43 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.21 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.15 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.93 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.91 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.66 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.43 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.87 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.38 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.44 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.41 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.99 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.7e-22 Score=206.20 Aligned_cols=384 Identities=13% Similarity=0.045 Sum_probs=278.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004470 332 VVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGK 411 (751)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 411 (751)
+...+.+.|++++|.+.++++++.. +-+..++..+...|.+.|++++|...|++..+.++. +..+|..+...+...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcc
Confidence 3445566677777777777766652 234566666777777777777777777777665433 56667777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 412 MVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHE 491 (751)
Q Consensus 412 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 491 (751)
+++|++.+....... +.+..............+....+............. ...............+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHH
Confidence 777777777776653 334444444455555555555555555554443322 444445555566677777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 004470 492 MCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSV 571 (751)
Q Consensus 492 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 571 (751)
...... -+...+..+...+...|+.++|...+++..+.. +.+...+..+...+...|++++|...+++....+ +.+.
T Consensus 161 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred hhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 766543 256677777778888888888888888877654 4567778888888888888888888888887654 4567
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 572 VTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGH 651 (751)
Q Consensus 572 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 651 (751)
..+..+...+.+.|++++|...++++.+... -+..++..+...+...|++++|.+.++...... +.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 7778888888888888888888888887532 246678888888888899999999988887753 45677888888889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004470 652 CKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGN 726 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (751)
.+.|++++|++.++++++..+. +..++..++.+|.+.|++++|++.|+++++.. |.+...|..++.+|.+.||
T Consensus 316 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 9999999999999998887554 67788889999999999999999999998854 4467888889998888875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.2e-21 Score=202.71 Aligned_cols=383 Identities=14% Similarity=0.069 Sum_probs=223.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcC
Q 004470 191 FFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFG 270 (751)
Q Consensus 191 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 270 (751)
++..+.+.|++++|.+.|+++++. .|+.......++.++...|++++|...|+++++..|. +..+|..+...|.+.|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhc
Confidence 677788889999999999988876 5766666666666666778888888888888877654 6777888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 004470 271 KIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILR 350 (751)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (751)
++++|+..+........ .+...+..........+....+........... .................+....+...+.
T Consensus 82 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ccccccccccccccccc-ccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHH
Confidence 88888888888776543 344444455555555555555555555554442 2244444455555566666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004470 351 EMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPD 430 (751)
Q Consensus 351 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 430 (751)
...... +.+...+..+...+...|++++|...+++..+..+. +...|..+...+...|++++|+..+++....+ +.+
T Consensus 160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 236 (388)
T d1w3ba_ 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhH
Confidence 655542 234455666666666666666666666666554322 44555556666666666666666666555542 224
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004470 431 EIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNG 510 (751)
Q Consensus 431 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~ 510 (751)
...+..+...+.+.|++++|...++++.+..+. +..++..+...+...|++++|.+.++...... +.+...+..+...
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence 445555555555555555555555555554322 34455555555555555555555555554432 2244444455555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004470 511 LCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSG 585 (751)
Q Consensus 511 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 585 (751)
+...|++++|+..+++..+.. +.+..++..+...|.+.|++++|...|++.++.. |.+..+|..+...|.+.|
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 555555555555555544432 2334444444555555555555555555544432 223444444444444433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.8e-13 Score=136.87 Aligned_cols=271 Identities=11% Similarity=-0.018 Sum_probs=164.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 004470 438 IDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNI 517 (751)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 517 (751)
...+.+.|++++|...|+++++..+. +..+|..+..++...|++++|...+++..+..+. +...+..+...+...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccccc
Confidence 34445555555555555555554322 4455555555555555555555555555544322 444555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004470 518 LQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWM 597 (751)
Q Consensus 518 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 597 (751)
++|.+.++++.... |+............ ...+.......+..+...+...+|.+.+.+.
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 55555555554432 21100000000000 0000011111222334456677888888887
Q ss_pred HHcCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004470 598 LEKGL-KPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTT 676 (751)
Q Consensus 598 ~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 676 (751)
.+... ..+..++..+...+...|++++|...+++.+... +-+...|..+...|.+.|++++|++.|+++++..+. +.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~ 240 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YI 240 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cH
Confidence 76532 2356677788888889999999999999988753 235778888999999999999999999999887544 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 004470 677 SSYNALIKGFLKRKKYLEARELFEEMRRGG----------LVADREIYYFFVDINFEEGNTEITLEL 733 (751)
Q Consensus 677 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 733 (751)
.+|..++.+|.+.|++++|++.|+++++.. .......|..+..++...|+.+.+...
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 889999999999999999999999988721 111224556667777777877766544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.3e-13 Score=139.36 Aligned_cols=247 Identities=10% Similarity=-0.009 Sum_probs=172.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004470 471 ALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSG 550 (751)
Q Consensus 471 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 550 (751)
.....+.+.|++++|...|+++++..+. +..+|..+..++...|++++|...+.+..+.. +.+...+..++..|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 3455566777777777777777766433 56666677777777777777777777766654 445666666667777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 004470 551 EMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYK 630 (751)
Q Consensus 551 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 630 (751)
++++|.+.++++.... |+............. ..+.......+..+...+...+|.+.+.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 7777777777666542 221100000000000 0000011112223345567788999998
Q ss_pred HHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004470 631 GMCAQGI-TPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVA 709 (751)
Q Consensus 631 ~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 709 (751)
+.++... .++...+..+...+...|++++|+..+++++...+. +..+|..++..|.+.|++++|++.++++++.. +.
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 8877432 235778888999999999999999999999987655 78899999999999999999999999999864 55
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 710 DREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
+...+..++.+|.+.|++++|++.|+++++...
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 271 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQR 271 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 788899999999999999999999999998644
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.1e-09 Score=108.86 Aligned_cols=145 Identities=9% Similarity=0.034 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 468 TYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAG-NILQAVKLMEDMEVAGFHPDTFTYTTIMDAY 546 (751)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 546 (751)
.++.+...+.+.+..++|+++++++++.++. +...|+....++...| ++++|+..++...+.. +-+..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 4444555555555566666666666555332 4445555555555544 3555555555555543 34455555555555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 004470 547 CKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQH 616 (751)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~ 616 (751)
.+.|++++|++.++++++.. +.+...|..+...+...|++++|++.++++++.... +...|+.+...+
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l 190 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVI 190 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHH
Confidence 55555555555555555542 334555555555555555555555555555554221 333444444333
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.9e-08 Score=101.65 Aligned_cols=293 Identities=10% Similarity=0.039 Sum_probs=161.3
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CC-CHHHHHHHHHHH
Q 004470 441 YCKAGGMKKAFSLHNNMVHMRLTPN----VVTYTALADGLCKSGELETANELLHEMCRKGL----QL-NIYTYNSIVNGL 511 (751)
Q Consensus 441 ~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~~-~~~~~~~li~~~ 511 (751)
+...|++++|..++++.++..+..+ ..++..+...+...|++++|...+++..+... .+ ....+..+...+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3444455555555444444321111 12344444555555555555555554433210 00 112334444555
Q ss_pred HHcCCHHHHHHHHHHHHH----CCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 004470 512 CKAGNILQAVKLMEDMEV----AGFHP---DTFTYTTIMDAYCKSGEMVKAHELLRDMLDK----GLQPSVVTFNVLMNG 580 (751)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~----~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li~~ 580 (751)
...|++..+...+..... .+... ....+..+...+...|+++.+...+...... +......++..+...
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 566666666666655432 11111 1233445556666777777777777666542 112233445555556
Q ss_pred HHhcCChhHHHHHHHHHHHcC--CCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 004470 581 FCMSGMIEDGEKLLKWMLEKG--LKPN----AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP---DGNTYNILLQGH 651 (751)
Q Consensus 581 ~~~~g~~~~A~~l~~~~~~~g--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~ 651 (751)
+...++..++...+.+..... .... ...+..+...+...|+.++|...+++..+..... ....+..+...+
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 666777777777666555321 1111 1234455556677788888888877766532221 234556677788
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC----CCHHHHHHHH
Q 004470 652 CKARNMKEAWFLHKEMVQ----KGFNLT-TSSYNALIKGFLKRKKYLEARELFEEMRRG----GLV----ADREIYYFFV 718 (751)
Q Consensus 652 ~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~----~~~~~~~~l~ 718 (751)
...|++++|...+++++. .+..|+ ..++..++..|...|++++|.+.++++++. |.. .....+..++
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~ 341 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQL 341 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHH
Confidence 888888888888887764 232222 346777888888888888888888887652 221 1223444556
Q ss_pred HHHHhcCChhHHHHH
Q 004470 719 DINFEEGNTEITLEL 733 (751)
Q Consensus 719 ~~~~~~g~~~~A~~~ 733 (751)
..+...|+.+++.+.
T Consensus 342 ~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 342 RQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHTTCSCHHHHH
T ss_pred HHHHhcCCChHHHHH
Confidence 677778888877654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=2.7e-09 Score=108.05 Aligned_cols=273 Identities=11% Similarity=0.060 Sum_probs=202.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHH
Q 004470 469 YTALADGLCKSGELETANELLHEMCRKGLQLN----IYTYNSIVNGLCKAGNILQAVKLMEDMEVAGF-HPD----TFTY 539 (751)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~ 539 (751)
.......+...|++++|.+++++..+.....+ ...+..+...+...|++++|...+++..+... .++ ...+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 34456667899999999999999988643322 24677788899999999999999998765310 112 3456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh----CCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC----CCHhh
Q 004470 540 TTIMDAYCKSGEMVKAHELLRDMLD----KGLQP---SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLK----PNAAT 608 (751)
Q Consensus 540 ~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~----p~~~~ 608 (751)
..+...+...|++..+...+..... .+... ....+..+...+...|+++.|...+......... .....
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 6677888999999999999987753 22121 1235666778888999999999999988865322 22345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 004470 609 YNPLIKQHCLRNDMRTTAKIYKGMCAQ--GITPD----GNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL---TTSSY 679 (751)
Q Consensus 609 ~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~ 679 (751)
+......+...++...+...+.+.... ..... ...+..+...+...|++++|...+++........ ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 566677788999999999988876651 11111 2345666778889999999999999887653332 23466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 680 NALIKGFLKRKKYLEARELFEEMRR----GGLVA-DREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 680 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
..++..+...|++++|...+++++. .+..| ....+..++.+|.+.|++++|++.++++++..
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 321 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 7789999999999999999999874 23333 34567788999999999999999999997753
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=4.8e-09 Score=104.19 Aligned_cols=198 Identities=9% Similarity=0.025 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004470 431 EIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSG-ELETANELLHEMCRKGLQLNIYTYNSIVN 509 (751)
Q Consensus 431 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~~~~~~~~~li~ 509 (751)
...++.+...+.+.+..++|+.+++++++..+. +...|+....++...| ++++|++.++...+.... +..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 456677777888899999999999999998655 7788899988888876 589999999999888655 7889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---
Q 004470 510 GLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGM--- 586 (751)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--- 586 (751)
.+.+.|++++|+..++++.+.. +.+...|..+...+.+.|++++|++.++.+++.+ +.+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 9999999999999999999876 6778999999999999999999999999999875 4477788887777766554
Q ss_pred ---hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004470 587 ---IEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCA 634 (751)
Q Consensus 587 ---~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 634 (751)
+++|++.+.++++... .+...|+.+...+ .....+++.+.++...+
T Consensus 199 ~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll-~~~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGIL-QDRGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHH-TTTCGGGCHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHH-HhcChHHHHHHHHHHHH
Confidence 4566666666665422 2444454444433 23334555555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.16 E-value=8.2e-09 Score=102.34 Aligned_cols=190 Identities=13% Similarity=0.077 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 004470 551 EMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYK 630 (751)
Q Consensus 551 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 630 (751)
..++|..+|++.++...+.+...|...+..+.+.|+.+.|..+++++++........+|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 44667777777776544555666666777777777777777777777765333234456777777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CC
Q 004470 631 GMCAQGITPDGNTYNILLQG-HCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG-LV 708 (751)
Q Consensus 631 ~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 708 (751)
++++.+. .+...|...+.. +...|+.+.|..+|+.+++..+. ++..|...++.+.+.|+++.|+.+|+++++.. ..
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 7776532 233334333332 23456777788888877776433 66777777777777788888888888877643 23
Q ss_pred CC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 709 AD--REIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 709 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
|+ ...|...+..-...|+.+.+.++++++.+...
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 32 34566666655666888888887777777654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=2.7e-10 Score=114.94 Aligned_cols=264 Identities=7% Similarity=-0.052 Sum_probs=191.5
Q ss_pred ChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhc----------CChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhh
Q 004470 110 DYRLVLDFFDWACLRREPILEARCIVVQISVAA----------KDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYK 179 (751)
Q Consensus 110 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (751)
.++.|++.|+.+....|.+..++.....++... +++++|...++.+++.+
T Consensus 44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-------------------- 103 (334)
T d1dcea1 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------------------- 103 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence 358899999999988888887776655554432 22456666666655443
Q ss_pred cCCCChhhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCccC-HHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCH
Q 004470 180 DWGSDPHVFDIFFQVLVEARK--LNEARKLFEKLLNYGLVIS-VDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNT 256 (751)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~ 256 (751)
|.++.+|..++.++...++ .++|+..+.++++. .|+ ...+...++......+..++|+..++++++.++. +.
T Consensus 104 --pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~ 178 (334)
T d1dcea1 104 --PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NY 178 (334)
T ss_dssp --TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CH
T ss_pred --CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh--CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CH
Confidence 7788888888888888775 78999999999887 444 4444556666666789999999999999999876 88
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004470 257 ASYNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLL 336 (751)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 336 (751)
.+|+.+...+.+.|++++|...++...... |+ ...+...+...+..+++...+....... +++..++..++..+
T Consensus 179 ~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~ 252 (334)
T d1dcea1 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKS 252 (334)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHH
Confidence 899999999999999998877665544321 11 1223344566677788888888877664 34666777778888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 004470 337 CKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPD-LLTYTAIICGFC 407 (751)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~ 407 (751)
...|+.++|...+.+..... +.+..++..+...|.+.|+.++|.+.+++..+.. |+ ..-|..+...+.
T Consensus 253 ~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 253 TVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHHh
Confidence 88888888888888877663 2345677778888888889999999998888754 43 445555544443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=3.2e-10 Score=114.46 Aligned_cols=264 Identities=7% Similarity=-0.049 Sum_probs=176.7
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHH----------HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 004470 447 MKKAFSLHNNMVHMRLTPNVVTYTALADG----------LCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAG- 515 (751)
Q Consensus 447 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~----------~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g- 515 (751)
.++|+.+++++++..+. +...|+..... +...|.+++|+..++...+..++ +...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhcc
Confidence 35566666665554322 23333322222 23345577888888888776543 6667777766666655
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 004470 516 -NILQAVKLMEDMEVAGFHPDTFTYT-TIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKL 593 (751)
Q Consensus 516 -~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 593 (751)
+.++|...+..+.+.. +++...+. .....+...+.+++|+..++.+++.+ +-+...|+.+...+.+.|++++|...
T Consensus 123 ~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4788888888887765 45566554 34456667888889998888888775 45788888888888888888877665
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004470 594 LKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFN 673 (751)
Q Consensus 594 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (751)
+....+. .|+ .......+...+..+++...+....... +++...+..++..+...|+.++|+..+.+.....+.
T Consensus 201 ~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 274 (334)
T d1dcea1 201 GRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW 274 (334)
T ss_dssp CSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence 5544432 111 1223334456677777888888777753 334555666777778888999999998888776543
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 674 LTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINF 722 (751)
Q Consensus 674 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (751)
+..++..++.++...|++++|++.++++++.+ |.+...|..+...+.
T Consensus 275 -~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 275 -CLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKFL 321 (334)
T ss_dssp -HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHHHHHHHh
Confidence 56788888999999999999999999998853 334555665655544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=4.1e-08 Score=97.13 Aligned_cols=189 Identities=10% Similarity=-0.018 Sum_probs=148.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 004470 515 GNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLL 594 (751)
Q Consensus 515 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 594 (751)
+..++|..++++..+...+.+...+...+..+.+.|+++.|..+|+++++.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578888998888765456677788888888899999999999999987643334567888888888999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-
Q 004470 595 KWMLEKGLKPNAATYNPLIKQ-HCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGF- 672 (751)
Q Consensus 595 ~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 672 (751)
+.+++.+.. +...|...... +...|+.+.|..+|+.+++. .+.+...+...++.+.+.|+.+.|..+|+++++..+
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 999876433 33344333332 34568999999999999985 244678888999999999999999999999988643
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 673 NL--TTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 673 ~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
.| ....|...+..-...|+.+.+.++++++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 2457888888878889999999999998773
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=5.2e-09 Score=100.90 Aligned_cols=218 Identities=8% Similarity=-0.095 Sum_probs=132.1
Q ss_pred CHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004470 481 ELETANELLHEMCRKGLQL---NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHE 557 (751)
Q Consensus 481 ~~~~A~~l~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 557 (751)
+.+.++.-+++........ ...+|..+..+|.+.|++++|+..|++..+.. +.++.+|..+..+|.+.|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 3556666666666542211 12356667778888888888888888887765 5667788888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004470 558 LLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGI 637 (751)
Q Consensus 558 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 637 (751)
.|+++++.. +.+..++..+...|...|++++|.+.++...+... .+......+..++...+..+.+..+........
T Consensus 93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (259)
T d1xnfa_ 93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 169 (259)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-
T ss_pred hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-
Confidence 888887754 34566777778888888888888888888877632 234444444444555555555555555555432
Q ss_pred CCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 638 TPDGNTYNILLQGHCKAR----NMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 638 ~p~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
++...++ ++..+.... ..+.+...+......... ...+|..++..|...|++++|++.|++++..
T Consensus 170 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 170 -KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEH-LSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp -CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2222221 122221111 122222222222211111 2345666777788888888888888887764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=9.8e-09 Score=98.88 Aligned_cols=219 Identities=11% Similarity=-0.053 Sum_probs=128.5
Q ss_pred ChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004470 446 GMKKAFSLHNNMVHMRLTP---NVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQAVK 522 (751)
Q Consensus 446 ~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 522 (751)
+.+.|+.-+++........ ...+|..+...|.+.|++++|.+.|++.++..+. ++.+|+.+..++.+.|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhh
Confidence 3455666666666542211 2235666677777888888888888887776433 66777777788888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 523 LMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGL 602 (751)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~ 602 (751)
.|+++.+.. +.+..++..+..+|...|++++|...|+..++.. +.+......+..++.+.+..+.+..+........
T Consensus 93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (259)
T d1xnfa_ 93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 169 (259)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-
T ss_pred hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-
Confidence 888877764 4456677777777778888888888888777653 3345444444445555555555555555444432
Q ss_pred CCCHhhHHHHHHHHHHcCC----HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 603 KPNAATYNPLIKQHCLRND----MRTTAKIYKGMCAQGITPD-GNTYNILLQGHCKARNMKEAWFLHKEMVQKGF 672 (751)
Q Consensus 603 ~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 672 (751)
++...++ ++..+..... .+.+...+..... ..|+ ..+|..+...|...|++++|++.|+++++..+
T Consensus 170 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 170 -KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp -CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred -hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 1221221 2222211111 2222222221111 1121 34556677777778888888888888776544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.74 E-value=2.7e-05 Score=74.24 Aligned_cols=221 Identities=12% Similarity=0.056 Sum_probs=115.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 504 YNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCK----SGEMVKAHELLRDMLDKGLQPSVVTFNVLMN 579 (751)
Q Consensus 504 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 579 (751)
+..|...+...+++++|++.|++..+.| +...+..|...|.. ..+...|...+....+.+ +......+..
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 3333344444444444444444444432 22333333333333 334455555555544433 2222333332
Q ss_pred HHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 580 GFCM----SGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHC----LRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGH 651 (751)
Q Consensus 580 ~~~~----~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 651 (751)
.+.. ..+.+.|...++...+.|.. .....+...+. .......+...+...... .+...+..|...+
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~ 152 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLY 152 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhh
Confidence 2222 23445555555555544321 11111222221 233455566666655553 3455555666666
Q ss_pred Hh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004470 652 CK----ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK----RKKYLEARELFEEMRRGGLVADREIYYFFVDINFE 723 (751)
Q Consensus 652 ~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (751)
.. ..+...+...++...+.| ++.....+...|.. ..++++|+.+|++..+.| ++..+..|+..|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~ 226 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYN 226 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred ccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHc
Confidence 54 345666777777776654 55666666666654 457888888888887765 45566667776664
Q ss_pred ----cCChhHHHHHHHHHHHcCC
Q 004470 724 ----EGNTEITLELCDAAIECYL 742 (751)
Q Consensus 724 ----~g~~~~A~~~~~~~~~~~~ 742 (751)
..+.++|.++|+++.+.|.
T Consensus 227 G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 227 GEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCCccCHHHHHHHHHHHHHCcC
Confidence 3477888888888877764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=2.4e-07 Score=76.23 Aligned_cols=90 Identities=11% Similarity=0.057 Sum_probs=45.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKY 692 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 692 (751)
...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..++++++.++. ++..|..++.++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCH
Confidence 334445555555555555555432 223444555555555555555555555555554433 444555555555555555
Q ss_pred HHHHHHHHHHHH
Q 004470 693 LEARELFEEMRR 704 (751)
Q Consensus 693 ~~A~~~~~~~~~ 704 (751)
++|+..|++.++
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=5.1e-07 Score=81.74 Aligned_cols=123 Identities=8% Similarity=-0.093 Sum_probs=75.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004470 578 MNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNM 657 (751)
Q Consensus 578 i~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 657 (751)
...+...|++++|++.|.++ .+|+..+|..+...|...|++++|++.|++.++.+ +.+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 33445667777777666543 24455666666666777777777777777766643 22456666666667777777
Q ss_pred HHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 658 KEAWFLHKEMVQKGFNLT---------------TSSYNALIKGFLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 658 ~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 705 (751)
++|++.|++.+....... ..++..++.++.+.|++++|.+.++.+++.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 777777776665321100 234455666666677777777766666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.58 E-value=3.3e-07 Score=83.89 Aligned_cols=99 Identities=12% Similarity=0.001 Sum_probs=79.7
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 604 PNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALI 683 (751)
Q Consensus 604 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 683 (751)
|+...+...+..|.+.|++++|++.|+++++.. +.+...|..++.+|.+.|++++|+..|+++++..+. +..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 666777777888888888888888888888753 336777888888888888888888888888876544 677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004470 684 KGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~ 704 (751)
.+|.+.|++++|+..|+++++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888888876
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.56 E-value=0.00012 Score=69.53 Aligned_cols=221 Identities=12% Similarity=0.020 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004470 468 TYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCK----AGNILQAVKLMEDMEVAGFHPDTFTYTTIM 543 (751)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 543 (751)
.+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +......+.
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 33444444444455555555555544443 33333334433333 334555555555544433 222222222
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004470 544 DAYCK----SGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCM----SGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQ 615 (751)
Q Consensus 544 ~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~ 615 (751)
..+.. ..+.+.|...++...+.|. ......+...+.. ......|...+...... .+...+..|...
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~ 151 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSL 151 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhh
Confidence 22221 3345555555555555441 2222222222221 23444555555554442 244445555555
Q ss_pred HHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 616 HCL----RNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFL 687 (751)
Q Consensus 616 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 687 (751)
|.. ..+...+..+++...+.| +......+...|.. ..+.++|+..|++..+.| ++..+..|+..|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 225 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence 543 345666667777666644 45555555555554 457888888888887776 5566667777776
Q ss_pred h----cCCHHHHHHHHHHHHHCC
Q 004470 688 K----RKKYLEARELFEEMRRGG 706 (751)
Q Consensus 688 ~----~g~~~~A~~~~~~~~~~~ 706 (751)
+ ..++++|.++|+++.+.|
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCccCHHHHHHHHHHHHHCc
Confidence 5 336778888888887766
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.56 E-value=1.5e-06 Score=84.73 Aligned_cols=196 Identities=12% Similarity=-0.014 Sum_probs=119.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----CHhhHHH
Q 004470 542 IMDAYCKSGEMVKAHELLRDMLDK----GLQP-SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKP-----NAATYNP 611 (751)
Q Consensus 542 li~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p-----~~~~~~~ 611 (751)
....|...|++++|.+.|.++.+. +-++ -..+|..+..+|.+.|++++|.+.+++..+..... ...++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 345677778888888888776542 1111 23467777788888888888888887766431111 1234555
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHH
Q 004470 612 LIKQHCL-RNDMRTTAKIYKGMCA----QGITP-DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLT------TSSY 679 (751)
Q Consensus 612 l~~~~~~-~g~~~~A~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~ 679 (751)
+...|.. .|++++|++.+++..+ .+..+ -..++..++..+...|++++|+..|+++........ ...+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 5555544 5888888888887764 12111 134567778888888888888888888877533211 1233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH---HHHHHHHHHHHh--cCChhHHHHHHHHH
Q 004470 680 NALIKGFLKRKKYLEARELFEEMRRGGL-VADR---EIYYFFVDINFE--EGNTEITLELCDAA 737 (751)
Q Consensus 680 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~---~~~~~l~~~~~~--~g~~~~A~~~~~~~ 737 (751)
...+..+...|+++.|.+.++++.+... .++. .....++.++.. .+.+++|++.|+++
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555566778888888888888876431 1121 233344444443 23467777766543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.5e-06 Score=71.22 Aligned_cols=95 Identities=11% Similarity=-0.101 Sum_probs=77.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004470 647 LLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGN 726 (751)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (751)
-+..+.+.|++++|+..|+++++..+. ++..|..++.+|.+.|++++|+..++++++.+ +.++..|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 456677888888888888888887655 77788888888888888888888888888865 6677888888888888888
Q ss_pred hhHHHHHHHHHHHcCCC
Q 004470 727 TEITLELCDAAIECYLV 743 (751)
Q Consensus 727 ~~~A~~~~~~~~~~~~~ 743 (751)
+++|+..++++++..+.
T Consensus 87 ~~~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEAN 103 (117)
T ss_dssp HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 88888888888876544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.7e-06 Score=75.57 Aligned_cols=119 Identities=9% Similarity=0.006 Sum_probs=94.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004470 612 LIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKK 691 (751)
Q Consensus 612 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 691 (751)
....|.+.|++++|...|++.++.. +.+...|..+..+|...|++++|+..|+++++..+. +..+|..++.++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCC
Confidence 3456779999999999999999864 336888999999999999999999999999987655 77889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHH
Q 004470 692 YLEARELFEEMRRGGLVADREIYYFFVDI--NFEEGNTEITLEL 733 (751)
Q Consensus 692 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~ 733 (751)
+++|...++++.+.. +.+...+..+..+ ..+.+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999864 4456666555544 3444556666543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=3.7e-06 Score=75.89 Aligned_cols=82 Identities=13% Similarity=0.059 Sum_probs=38.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 617 CLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR 696 (751)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 696 (751)
...|+++.|++.|+++ .+|+..+|..+..+|...|++++|++.|+++++.++. ++..|..++.++.+.|++++|+
T Consensus 16 ~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHH
Confidence 3444444444444432 1234444444444444555555555555554444333 3444444444444455555555
Q ss_pred HHHHHHH
Q 004470 697 ELFEEMR 703 (751)
Q Consensus 697 ~~~~~~~ 703 (751)
+.|++++
T Consensus 91 ~~~~kAl 97 (192)
T d1hh8a_ 91 KDLKEAL 97 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.46 E-value=6.9e-07 Score=72.71 Aligned_cols=91 Identities=16% Similarity=-0.009 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 646 ILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEG 725 (751)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (751)
.+...+.+.|++++|+..|+++++..+. ++.+|..++.++.+.|++++|+..++++++.. |.+...+..++.+|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 3456677888888888888888887655 77888888888888888888888888888764 557788888888888888
Q ss_pred ChhHHHHHHHHHH
Q 004470 726 NTEITLELCDAAI 738 (751)
Q Consensus 726 ~~~~A~~~~~~~~ 738 (751)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8888888888764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=4.1e-06 Score=81.44 Aligned_cols=202 Identities=14% Similarity=0.026 Sum_probs=91.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHH
Q 004470 187 VFDIFFQVLVEARKLNEARKLFEKLLNY----GLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIM 262 (751)
Q Consensus 187 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 262 (751)
.|.-.+.+|...|++++|.+.|.++.+. +-.++.. .+|+.+
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a-----------------------------------~~~~~~ 83 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAG-----------------------------------NTYVEA 83 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHH-----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHH-----------------------------------HHHHHH
Confidence 4555666677777777777777776542 1112222 233444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC----CCCC-CcccHHH
Q 004470 263 IHCLCRFGKIKEAHLLLLQMELR----GC-SPDVVSFSTIINGYCY-LGELQRVLKLIEEMQIK----GLKP-NPYTYNS 331 (751)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ 331 (751)
..+|.+.|++++|++.+++..+. |. .....++..+...|.. .|++++|++.+.+..+. +.++ ...++..
T Consensus 84 g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~ 163 (290)
T d1qqea_ 84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Confidence 44444555555555444443221 00 0012233333434422 35555555555554321 1111 1233555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC---HHHHHH
Q 004470 332 VVRLLCKTSKVVEAETILREMMNQGIVPD-----N-VIYTTLIDGFCKMGNVAAAYRLFDEMRGLNII-PD---LLTYTA 401 (751)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~---~~~~~~ 401 (751)
+...+...|++++|.+.++++........ . ..+...+..+...|+++.|.+.+++..+..+. ++ ......
T Consensus 164 la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~ 243 (290)
T d1qqea_ 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKS 243 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHH
Confidence 55666666666666666666554321110 0 12233334455566666666666666554211 11 122334
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHH
Q 004470 402 IICGFCL--TGKMVEAEKLFHEML 423 (751)
Q Consensus 402 li~~~~~--~g~~~~A~~~~~~m~ 423 (751)
++.++-. .+.+++|+..|+++.
T Consensus 244 l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 244 LIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHh
Confidence 4444433 234666666665443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.6e-06 Score=75.75 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=87.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004470 645 NILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEE 724 (751)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (751)
......|.+.|++++|+..|+++++.++. +...|..++.+|...|++++|+..|+++++.. +.+...|..++.++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence 34466788999999999999999998766 89999999999999999999999999999975 66788999999999999
Q ss_pred CChhHHHHHHHHHHHcCCC
Q 004470 725 GNTEITLELCDAAIECYLV 743 (751)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~ 743 (751)
|++++|.+.++++++....
T Consensus 92 g~~~eA~~~~~~a~~~~p~ 110 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPH 110 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 9999999999999987654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.34 E-value=2.9e-06 Score=77.38 Aligned_cols=99 Identities=9% Similarity=-0.064 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 004470 569 PSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITP-DGNTYNIL 647 (751)
Q Consensus 569 p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 647 (751)
|+...+......|.+.|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..|+++++. .| +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence 678888888999999999999999999999874 336788999999999999999999999999974 45 57889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 004470 648 LQGHCKARNMKEAWFLHKEMVQK 670 (751)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~~~~~ 670 (751)
+.+|.+.|++++|+..|+++++.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998875
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=7.9e-06 Score=71.98 Aligned_cols=86 Identities=10% Similarity=-0.042 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 642 NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDIN 721 (751)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (751)
.+|+.+..+|.+.|++++|+..++++++.++. ++..|..++.+|...|++++|+..|+++++.+ |.|......+..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45677888899999999999999999998765 88899999999999999999999999999865 45777777777666
Q ss_pred HhcCChhH
Q 004470 722 FEEGNTEI 729 (751)
Q Consensus 722 ~~~g~~~~ 729 (751)
.+.+...+
T Consensus 141 ~~~~~~~~ 148 (170)
T d1p5qa1 141 QRIRRQLA 148 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.2e-06 Score=72.13 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 004470 610 NPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKAR---NMKEAWFLHKEMVQKGFNLT-TSSYNALIKG 685 (751)
Q Consensus 610 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 685 (751)
..++..+...+++++|.+.|++.+..+ +.+..++..+..++.+.+ ++++|+.+++++++.++.|+ ..+|..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666677777777777777777754 345677777777776544 34457777777776554433 2366677777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 004470 686 FLKRKKYLEARELFEEMRRG 705 (751)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~ 705 (751)
|.+.|++++|++.|+++++.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 77777777777777777774
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=5.2e-06 Score=68.22 Aligned_cols=96 Identities=11% Similarity=0.098 Sum_probs=61.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 004470 646 ILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKK---YLEARELFEEMRRGGLVAD-REIYYFFVDIN 721 (751)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 721 (751)
.+++.+...+++++|.+.|++.+..++. ++.++..+++++.+.++ +++|+.+++++++.+..|+ ...+..++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4555666667777777777777776544 66677777777765443 3457777777666432222 23566677777
Q ss_pred HhcCChhHHHHHHHHHHHcCC
Q 004470 722 FEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~ 742 (751)
.+.|++++|++.|+++++..+
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P 103 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEP 103 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhhHHHHHHHHHHHHhCc
Confidence 777777777777777776544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.20 E-value=3e-06 Score=68.80 Aligned_cols=89 Identities=12% Similarity=-0.050 Sum_probs=81.2
Q ss_pred HHHHhhcCChHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcC
Q 004470 102 WVLMDIRSDYRLVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDW 181 (751)
Q Consensus 102 ~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (751)
.....-+++++.|+.+|+.+....|.+..++..++.++...+++++|...++++++.+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~---------------------- 80 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---------------------- 80 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc----------------------
Confidence 3445568999999999999999999999999999999999999999999999998776
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004470 182 GSDPHVFDIFFQVLVEARKLNEARKLFEKLL 212 (751)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 212 (751)
|.++.++..|+.+|...|++++|++.+++.+
T Consensus 81 p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 81 PKDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7888999999999999999999999999864
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.8e-05 Score=69.57 Aligned_cols=66 Identities=12% Similarity=-0.000 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 677 SSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 677 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
.+|+.++.+|.+.|++++|+..++++++.+ |.+...+..++.+|...|++++|+..|+++++..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~ 128 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 128 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 467788999999999999999999999975 668999999999999999999999999999997654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=6.8e-07 Score=94.38 Aligned_cols=230 Identities=6% Similarity=-0.060 Sum_probs=132.6
Q ss_pred HHHHHHHhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHH
Q 004470 113 LVLDFFDWACLRREPILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFF 192 (751)
Q Consensus 113 ~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 192 (751)
.|..+|+.|....|....++..++.++...+++.+| +++++..+ +..+..+ + +-..|
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d---p~~a~~~--------------~--~e~~L- 60 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD---LEYALDK--------------K--VEQDL- 60 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC---HHHHHHH--------------T--HHHHH-
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC---hhhHHHH--------------h--HHHHH-
Confidence 577888888777777777777788888888888776 55655433 1000000 0 00000
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCHHhHH-HHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCC
Q 004470 193 QVLVEARKLNEARKLFEKLLNYGLVISVDSCN-LFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGK 271 (751)
Q Consensus 193 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 271 (751)
. ...+..+.+.+++..+....++..... .+++.+....+.++.|+..+.+.....+. +...+..+...+.+.|+
T Consensus 61 ---w-~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~-~~~~~~~lg~~~~~~~~ 135 (497)
T d1ya0a1 61 ---W-NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLP-CRVKSSQLGIISNKQTH 135 (497)
T ss_dssp ---H-HHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------
T ss_pred ---H-HHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChh-hHHHHHHhHHHHHhCCC
Confidence 0 112456677777776654344433222 22333333346667777777766655433 66778888888999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 004470 272 IKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILRE 351 (751)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 351 (751)
.++|...+....... ...++..+...+...|++++|...|.+..+.. +-+..+|+.|...+...|+..+|...|.+
T Consensus 136 ~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~r 211 (497)
T d1ya0a1 136 TSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp -------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998887765531 13567778888999999999999999998874 33678899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC
Q 004470 352 MMNQGIVPDNVIYTTLIDGFCKMG 375 (751)
Q Consensus 352 m~~~g~~p~~~~~~~li~~~~~~g 375 (751)
.+... +|...++..|...+.+..
T Consensus 212 al~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 212 SIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHhCC-CCCHHHHHHHHHHHHHhh
Confidence 88864 567888888888776543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=9.4e-06 Score=67.55 Aligned_cols=101 Identities=12% Similarity=0.141 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C-----HHHHHHHH
Q 004470 610 NPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNL-T-----TSSYNALI 683 (751)
Q Consensus 610 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~-----~~~~~~l~ 683 (751)
..+...+...|++++|++.|++.++.+ +.+...+..+..+|.+.|++++|+..++++++..+.. . ..+|..++
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344445555555555555555555532 1234555555555555555555555555555432110 0 12344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004470 684 KGFLKRKKYLEARELFEEMRRGGLVADREI 713 (751)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 713 (751)
..+...+++++|++.|++.+. ..++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~--~~~~~~~ 114 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA--EHRTPDV 114 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh--cCCCHHH
Confidence 555555555555555555443 3444443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.06 E-value=0.00014 Score=63.57 Aligned_cols=98 Identities=9% Similarity=-0.022 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 642 NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDIN 721 (751)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (751)
.+|..+..+|.+.|++++|+..++++++.++. +...|..++.++...|++++|+..|+++++.. |.+......+..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 35667888899999999999999999998665 88899999999999999999999999999865 56777777777666
Q ss_pred HhcCCh-hHHHHHHHHHHHcC
Q 004470 722 FEEGNT-EITLELCDAAIECY 741 (751)
Q Consensus 722 ~~~g~~-~~A~~~~~~~~~~~ 741 (751)
.+.+.. +...+.+.+|.++.
T Consensus 143 ~~~~~~~e~~kk~~~~~f~~~ 163 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMFKKF 163 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhhh
Confidence 555543 44667777776653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.05 E-value=5.2e-05 Score=65.13 Aligned_cols=76 Identities=12% Similarity=-0.068 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 642 NTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVD 719 (751)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (751)
.+|..+..+|.+.|++++|++.++++++.++. +..+|..++.++...|++++|+..|++.++.+ |.|..+...+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~ 143 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677888888888888888888888887655 77888888888888888888888888888864 445555554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.00 E-value=6.7e-05 Score=64.42 Aligned_cols=67 Identities=18% Similarity=0.011 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004470 677 SSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLVG 744 (751)
Q Consensus 677 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 744 (751)
.+|..++.+|.+.|++++|++.++++++.+ |.+...|..++.++...|++++|+..|+++++..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 134 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 134 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 477889999999999999999999999975 6788999999999999999999999999999987543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.00 E-value=3.7e-05 Score=67.46 Aligned_cols=84 Identities=12% Similarity=-0.005 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 640 DGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVD 719 (751)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (751)
+...|..+..++.+.|++++|+..++++++..+. ++..|..++.+|...|++++|+..|+++++.. +.+...+..+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456777888899999999999999999988765 78899999999999999999999999999864 556676666665
Q ss_pred HHHhcC
Q 004470 720 INFEEG 725 (751)
Q Consensus 720 ~~~~~g 725 (751)
+..+..
T Consensus 154 ~~~~l~ 159 (169)
T d1ihga1 154 VKQKIK 159 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=0.0063 Score=58.63 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 004470 259 YNIMIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCK 338 (751)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 338 (751)
-..++.-+.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+...+..
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVD 81 (336)
T ss_dssp ------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHh
Confidence 33444445555666666666654432 4445555555666666555554331 34455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004470 339 TSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTG 410 (751)
Q Consensus 339 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 410 (751)
.....-| .+.......+......++..|-..|.+++...+++...... .++...++.++..|++.+
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 4443322 11122222344444556666666666666666666554321 234555566666665543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.96 E-value=0.0093 Score=57.40 Aligned_cols=134 Identities=15% Similarity=0.116 Sum_probs=57.9
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 325 NPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIIC 404 (751)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 404 (751)
|..--..++..|.+.|.++.|..++..+.. |..++..+.+.++++.|.+.+.+.. +..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHH
Confidence 444444445555566666666666553321 3445555555666666655554331 4445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004470 405 GFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKS 479 (751)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 479 (751)
.+.+.....-| .+.......+......++..|-..|.+++...+++...... ..+...++.++..|++.
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHh
Confidence 55554443322 11222223344444455555555566666555555544321 23444555555555553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=7e-05 Score=62.01 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHH
Q 004470 645 NILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGG--LVAD----REIYYFFV 718 (751)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~l~ 718 (751)
..+...+.+.|++++|+..|+++++.++. +...+..++.+|.+.|++++|+..++++++.. .... ..+|..++
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 34455555666666666666666655443 55555566666666666666666666655421 0000 13445555
Q ss_pred HHHHhcCChhHHHHHHHHHHHc
Q 004470 719 DINFEEGNTEITLELCDAAIEC 740 (751)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~ 740 (751)
..+...+++++|++.+++++..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 5566666666666666555543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=3.9e-06 Score=88.43 Aligned_cols=136 Identities=11% Similarity=-0.050 Sum_probs=71.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004470 304 LGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRL 383 (751)
Q Consensus 304 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 383 (751)
.+.++.|+..+....... +++...+..+...+.+.|+.++|...++...... ...++..+.+.+...|++++|...
T Consensus 99 ~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHH
Confidence 344555554444433321 2345566777777777888888777666655421 134566677788888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004470 384 FDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGRGLEPDEIVYTALIDGYCKAG 445 (751)
Q Consensus 384 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 445 (751)
|++..+..+. +...|+.+...+...|+..+|+..|.+.+... +|-..++..|...+.+..
T Consensus 175 y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 175 YRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 8888776543 56778888888888888888888888887653 556777777777765543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.81 E-value=2.5e-05 Score=73.80 Aligned_cols=124 Identities=12% Similarity=0.057 Sum_probs=88.0
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004470 138 ISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKLFEKLLNYGLV 217 (751)
Q Consensus 138 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 217 (751)
-....|++++|...+++.++.. |.++..+..|+..|+..|++++|...|+++.+. .
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~----------------------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~ 60 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKAS----------------------PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--F 60 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC----------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C
T ss_pred HHHHCCCHHHHHHHHHHHHHHC----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 3456899999999999998876 888899999999999999999999999999987 6
Q ss_pred cCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004470 218 ISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLCRFGKIKEAHLLLLQMELR 285 (751)
Q Consensus 218 p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (751)
|+.......++.+....+..+++...+......+.+++...+......+.+.|+.++|.++++++.+.
T Consensus 61 P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 61 PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 77665555555554333333333332222222333334445555666777888888888888877654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.72 E-value=8.5e-05 Score=62.98 Aligned_cols=115 Identities=10% Similarity=-0.016 Sum_probs=74.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004470 618 LRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK----------ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFL 687 (751)
Q Consensus 618 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 687 (751)
+.+.+++|++.|+..++.. +.+...+..+..++.. .+.+++|+..|+++++.++. +..+|..++.+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHH
Confidence 3444566666666666532 2245555555555543 24457788888888887655 7778888888887
Q ss_pred hcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004470 688 KRK-----------KYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYL 742 (751)
Q Consensus 688 ~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (751)
..| ++++|.+.|+++++. .|+...|...+ +...+|.+++.++.++|+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L------~~~~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL------EMTAKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH------HHHHTHHHHHHHHHHSSS
T ss_pred HcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHH------HHHHHHHHHHHHHHHHhc
Confidence 654 368899999999985 45554444322 234678888888888775
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.66 E-value=0.00092 Score=58.02 Aligned_cols=95 Identities=7% Similarity=-0.034 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004470 607 ATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGF 686 (751)
Q Consensus 607 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 686 (751)
.+|+.+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|+..|+++++..+. +..+...+....
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 356667788899999999999999998853 347888889999999999999999999999987654 666776666665
Q ss_pred HhcCCHH-HHHHHHHHHH
Q 004470 687 LKRKKYL-EARELFEEMR 703 (751)
Q Consensus 687 ~~~g~~~-~A~~~~~~~~ 703 (751)
.+.+... ...+.+..|.
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 5544433 3444444444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.65 E-value=0.00036 Score=60.84 Aligned_cols=82 Identities=10% Similarity=-0.077 Sum_probs=66.5
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004470 606 AATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKG 685 (751)
Q Consensus 606 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 685 (751)
...|..+..++.+.|++++|+..++++++.. +.+...|..++.+|...|++++|+..|+++++..+. +..+...+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4466778888999999999999999999854 336888999999999999999999999999997655 66677666655
Q ss_pred HHhc
Q 004470 686 FLKR 689 (751)
Q Consensus 686 ~~~~ 689 (751)
..+.
T Consensus 155 ~~~l 158 (169)
T d1ihga1 155 KQKI 158 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.63 E-value=3.9e-05 Score=72.39 Aligned_cols=125 Identities=7% Similarity=-0.064 Sum_probs=86.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 617 CLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEAR 696 (751)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 696 (751)
.+.|++++|++.+++.++.. +.|...+..++..|+..|++++|.+.++.+.+..+. +...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence 46788999999999988863 347788889999999999999999999999887544 4556666666665555444433
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004470 697 ELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECYLV 743 (751)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (751)
.-.......+-+++...+...+..+...|+.++|.+.++++.+....
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 32221111121223344445567788889999999999998887644
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=0.00066 Score=59.51 Aligned_cols=129 Identities=6% Similarity=-0.023 Sum_probs=88.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004470 576 VLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKAR 655 (751)
Q Consensus 576 ~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 655 (751)
.........|++++|.+.|.+.+..- +....- .+ ..+. .+...-..+.. .....+..++..+.+.|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l~-----~~-~~~~--w~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW--RGPVLD-----DL-RDFQ--FVEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTTG-----GG-TTST--THHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--cccccc-----cC-cchH--HHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 33456677899999999998888751 111100 00 0010 01111111111 02345677889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q 004470 656 NMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRR-----GGLVADREIYYFFVD 719 (751)
Q Consensus 656 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~ 719 (751)
++++|+..++++++..+. +...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+-...-.
T Consensus 82 ~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~ 149 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 149 (179)
T ss_dssp CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 999999999999998766 889999999999999999999999999854 689998876544333
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.59 E-value=0.00058 Score=58.51 Aligned_cols=94 Identities=13% Similarity=-0.020 Sum_probs=61.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-
Q 004470 648 LQGHCKARNMKEAWFLHKEMVQKGFN-L----------TTSSYNALIKGFLKRKKYLEARELFEEMRRG-----GLVAD- 710 (751)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~~~~~~~~-p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~- 710 (751)
...+...|++++|+..|++.++.... | ....|+.++.+|.+.|++++|.+.++++++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34455667777777777777653211 1 1356777788888888888888887777642 11121
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 711 ----REIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 711 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
...++.++.+|...|++++|++.|+++++..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 130 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1245667788888888888888888887754
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.50 E-value=0.00021 Score=60.45 Aligned_cols=110 Identities=5% Similarity=-0.102 Sum_probs=82.9
Q ss_pred hHHHHHHHHhhhhCCCCChhHHHHHHHHHHhcC----------ChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhc
Q 004470 111 YRLVLDFFDWACLRREPILEARCIVVQISVAAK----------DLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKD 180 (751)
Q Consensus 111 ~~~al~~f~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (751)
.+.|+..|+.+....|.+..++..++.++...+ .+++|...++++++.+
T Consensus 13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--------------------- 71 (145)
T d1zu2a1 13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--------------------- 71 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 588999999999999999999999998887543 3456777777776654
Q ss_pred CCCChhhHHHHHHHHHhcCC-----------hhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchh
Q 004470 181 WGSDPHVFDIFFQVLVEARK-----------LNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPE 249 (751)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~ 249 (751)
|.++.+|..++.+|...|+ +++|.+.|+++++. .|+...+...|+... .|.+.+.++.+
T Consensus 72 -P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~~-------ka~~~~~e~~k 141 (145)
T d1zu2a1 72 -PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTA-------KAPQLHAEAYK 141 (145)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH-------THHHHHHHHHH
T ss_pred -chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 7788899999999988764 57788888888876 677777666665553 35556655554
Q ss_pred cC
Q 004470 250 LG 251 (751)
Q Consensus 250 ~~ 251 (751)
.|
T Consensus 142 ~~ 143 (145)
T d1zu2a1 142 QG 143 (145)
T ss_dssp SS
T ss_pred Hh
Confidence 43
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.43 E-value=0.0015 Score=57.11 Aligned_cols=125 Identities=12% Similarity=0.029 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhCCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSNTCDGLRMVVKSFTEFPELGICWNTASYNIMIHCLC 267 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 267 (751)
....+......|++++|.+.|.+++.. .++... ..+ ..+.+ +...-..+... ....+..++..+.
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l-----~~~--~~~~w--~~~~r~~l~~~----~~~a~~~la~~~~ 78 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALRE--WRGPVL-----DDL--RDFQF--VEPFATALVED----KVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTT-----GGG--TTSTT--HHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--Cccccc-----ccC--cchHH--HHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 455677889999999999999999875 222210 000 01111 11111111111 3446777888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCccc
Q 004470 268 RFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQI-----KGLKPNPYT 328 (751)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 328 (751)
+.|++++|+..++++..... -+...|..++.+|.+.|+.++|++.|+++.. .|+.|...+
T Consensus 79 ~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 89999999999988877654 4778888889999999999999888888743 477776544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.21 E-value=0.0028 Score=53.96 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=65.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-
Q 004470 613 IKQHCLRNDMRTTAKIYKGMCAQGI-TP----------DGNTYNILLQGHCKARNMKEAWFLHKEMVQK-----GFNLT- 675 (751)
Q Consensus 613 ~~~~~~~g~~~~A~~~~~~m~~~g~-~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~p~- 675 (751)
...+...|++++|++.|++.++... .| ....|+.+..+|.+.|++++|+..+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3345566777777777777765210 01 1356788888899999999999988888752 11222
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004470 676 ----TSSYNALIKGFLKRKKYLEARELFEEMRR 704 (751)
Q Consensus 676 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 704 (751)
...+..++.+|...|++++|+..|+++++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23577889999999999999999999876
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.15 E-value=0.0054 Score=50.44 Aligned_cols=111 Identities=10% Similarity=0.076 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004470 621 DMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK----RKKYLEAR 696 (751)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 696 (751)
|+++|.++|++..+.|.. ..+..|. .....+.++|++.+++..+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 455666666666665421 1122222 123456677777777776665 45555566666554 34677777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCC
Q 004470 697 ELFEEMRRGGLVADREIYYFFVDINFE----EGNTEITLELCDAAIECYL 742 (751)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 742 (751)
++|++..+.| ++.....|+..|.. ..+.++|.++++++.+.|.
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 7777777755 34445556655554 3567777777777777653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.0013 Score=50.61 Aligned_cols=79 Identities=13% Similarity=0.048 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 004470 128 ILEARCIVVQISVAAKDLKTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDPHVFDIFFQVLVEARKLNEARKL 207 (751)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 207 (751)
+.+.++.++.++...|++++|...++++++...... ...+....++..|+.+|.+.|++++|+..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~---------------~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~ 68 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE---------------ISTIDKVSVLDYLSYAVYQQGDLDKALLL 68 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---------------CCSSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh---------------ccCccHHHHHHHHhhHHHhcCChHHHHHH
Confidence 456788999999999999999999999876421000 00122346788999999999999999999
Q ss_pred HHHHHhCCCccCHHhH
Q 004470 208 FEKLLNYGLVISVDSC 223 (751)
Q Consensus 208 ~~~~~~~g~~p~~~~~ 223 (751)
++++++. .|+....
T Consensus 69 y~~aL~l--~P~~~~a 82 (95)
T d1tjca_ 69 TKKLLEL--DPEHQRA 82 (95)
T ss_dssp HHHHHHH--CTTCHHH
T ss_pred HHHHHHh--CcCCHHH
Confidence 9999987 6776543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.003 Score=48.44 Aligned_cols=72 Identities=7% Similarity=-0.094 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004470 644 YNILLQGHCKARNMKEAWFLHKEMVQKG-----FNLT-TSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYF 716 (751)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 716 (751)
+-.++..+.+.|++++|+..|+++++.. ..++ ..++..++.++.+.|++++|+..++++++.. |.+...+..
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~N 85 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 3455666667777777777777666531 1112 3466677777777777777777777777653 334444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.66 E-value=0.026 Score=46.10 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 004470 619 RNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK----ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLK----RK 690 (751)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 690 (751)
..+.++|.+++++..+.| ++.....|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..
T Consensus 36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 456677777777777655 44555555555543 346788888888887776 45566667666665 35
Q ss_pred CHHHHHHHHHHHHHCC
Q 004470 691 KYLEARELFEEMRRGG 706 (751)
Q Consensus 691 ~~~~A~~~~~~~~~~~ 706 (751)
+.++|.++|+++.+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 7888888888887766
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.43 E-value=0.13 Score=39.78 Aligned_cols=140 Identities=15% Similarity=0.066 Sum_probs=88.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004470 582 CMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAW 661 (751)
Q Consensus 582 ~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 661 (751)
.-.|..++..++..+.... .+..-||.++--....-+-+...+.++..=+. -| ...++++....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHH
Confidence 3456666666666666553 24445555554444444444444444443221 01 11233333333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 662 FLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 662 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
..+-.+ + .+....+..++.+.++|+-+.-.++++.+.+.+ .++++....++.+|.+.|...+|-+++.++.++|
T Consensus 77 ~C~~~~---n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 333222 1 134556667788889999999999998887755 7888988899999999999999999999999988
Q ss_pred CC
Q 004470 742 LV 743 (751)
Q Consensus 742 ~~ 743 (751)
..
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 64
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.87 E-value=0.22 Score=38.55 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004470 610 NPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCKARNMKEAWFLHKEMVQKGF 672 (751)
Q Consensus 610 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 672 (751)
+..++.+..+|+-++-.++++.+.+.+ +|++...-.+..+|.+.|+..++-+++.++-++|.
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 334444555555555555555555432 45555555555666666666666666666655554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.38 E-value=0.059 Score=42.43 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004470 674 LTTSSYNALIKGFLKRK---KYLEARELFEEMRRGGLVAD-REIYYFFVDINFEEGNTEITLELCDAAIECY 741 (751)
Q Consensus 674 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (751)
++..+--..++++.++. +.++|+.+++++.+.+ +.+ ...++.++-+|++.|++++|+++++.+++..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 34444445555555443 2334555555555432 222 2344445555555555555555555555543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.44 E-value=0.1 Score=41.04 Aligned_cols=81 Identities=9% Similarity=0.088 Sum_probs=61.3
Q ss_pred CCCChhHHHHHHHHHHhcCCh---HHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhhhcCCCCh-hhHHHHHHHHHhcCC
Q 004470 125 REPILEARCIVVQISVAAKDL---KTAHGLIHDFWAKPNLDASIAFTHFVERLIYTYKDWGSDP-HVFDIFFQVLVEARK 200 (751)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~~---~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~g~ 200 (751)
...+..+.+..+..|.+++.. +.+..+|+.+++.+ |.+. ..+..|+.+|.+.|+
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~----------------------p~~~rd~lY~Lav~yyklgd 88 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA----------------------ESRRRECLYYLTIGCYKLGE 88 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC----------------------GGGHHHHHHHHHHHHHHHTC
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC----------------------chhHHHHHHHHHHHHHHHhh
Confidence 345678888999999887655 47888888876543 3333 467889999999999
Q ss_pred hhHHHHHHHHHHhCCCccCHHhHHHHHHH
Q 004470 201 LNEARKLFEKLLNYGLVISVDSCNLFLSR 229 (751)
Q Consensus 201 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 229 (751)
+++|...++.+++. .|+..-...+...
T Consensus 89 y~~A~~~~~~~L~i--eP~n~qA~~L~~~ 115 (124)
T d2pqrb1 89 YSMAKRYVDTLFEH--ERNNKQVGALKSM 115 (124)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--CCCcHHHHHHHHH
Confidence 99999999999997 7887655444433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.41 E-value=7.2 Score=38.25 Aligned_cols=410 Identities=10% Similarity=0.014 Sum_probs=215.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCccc----HHHHHHH
Q 004470 262 MIHCLCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYC--YLGELQRVLKLIEEMQIKGLKPNPYT----YNSVVRL 335 (751)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~li~~ 335 (751)
.+.-..+.|+.+++..+...+.+. | ...|-..-..-. .....++...++++ . |+... ....+..
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~---~---p~~P~~~~lr~~~l~~ 81 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRA---N---PTLPPARTLQSRFVNE 81 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHH---C---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHH---C---CCChhHHHHHHHHHHH
Confidence 344556778888777777776432 3 333332222221 23344444444433 1 23221 2233455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004470 336 LCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEA 415 (751)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 415 (751)
+.+.++.++....+. ..+.+...-..+..+..+.|+.++|...+..+-..|.. ..+.+
T Consensus 82 L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~~c 139 (450)
T d1qsaa1 82 LARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPNAC 139 (450)
T ss_dssp HHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCTHH
T ss_pred HHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------CchHH
Confidence 666666655333221 12344554556666677777777777766666544322 11222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004470 416 EKLFHEMLGRGLEPDEIVYTALIDGYCKAGGMKKAFSLHNNMVHMRLTPNVVTYTALADGLCKSGELETANELLHEMCRK 495 (751)
Q Consensus 416 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 495 (751)
..++..+...|. .+...+-.-+......|+...|..+...+.. .........+........+. ... ...
T Consensus 140 ~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~p~~~~---~~~---~~~ 208 (450)
T d1qsaa1 140 DKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANNPNTVL---TFA---RTT 208 (450)
T ss_dssp HHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHCGGGHH---HHH---HHS
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhChHhHH---HHH---hcC
Confidence 233444444332 3444444445556666777777776654321 12333344444333222221 111 111
Q ss_pred CCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHhCCCCC
Q 004470 496 GLQLNIYTYNSIVNGLCK--AGNILQAVKLMEDMEVAGFHPDTFTYTTIMD----AYCKSGEMVKAHELLRDMLDKGLQP 569 (751)
Q Consensus 496 g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~~~~~~~~p 569 (751)
..+......+..++.+ ..+.+.|..++....... ..+..-...+-. .....+..+.+...+......+ .
T Consensus 209 --~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~ 283 (450)
T d1qsaa1 209 --GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--Q 283 (450)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--C
T ss_pred --CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--c
Confidence 2233333333333333 357788888888776543 223332222222 2234566777877777776653 3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004470 570 SVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQ 649 (751)
Q Consensus 570 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 649 (751)
+.......+......+++..+...++.|... ......-.--+..++...|+.++|...|..+.. .++ .|..|..
T Consensus 284 ~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa 357 (450)
T d1qsaa1 284 STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAA 357 (450)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHH
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHH
Confidence 4444444555566778888888888776432 111233344567778888999999999888764 233 3443332
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004470 650 GHCKARNMKEAWFLHKEMVQKGF--NLTTS----SYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFE 723 (751)
Q Consensus 650 ~~~~~g~~~~A~~~~~~~~~~~~--~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (751)
. +.|..-. + ....+ .+... .-..-+..+...|+..+|...+..+.+. .+......++....+
T Consensus 358 ~--~Lg~~~~---~----~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~ 425 (450)
T d1qsaa1 358 Q--RIGEEYE---L----KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFN 425 (450)
T ss_dssp H--HTTCCCC---C----CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHH
T ss_pred H--HcCCCCC---C----CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 2 2221100 0 00000 00100 1113456778899999999999988763 345566678888999
Q ss_pred cCChhHHHHHHHHH
Q 004470 724 EGNTEITLELCDAA 737 (751)
Q Consensus 724 ~g~~~~A~~~~~~~ 737 (751)
.|.++.|+....++
T Consensus 426 ~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 426 NQWWDLSVQATIAG 439 (450)
T ss_dssp TTCHHHHHHHHHHT
T ss_pred CCChhHHHHHHHHH
Confidence 99999999766554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.99 E-value=13 Score=36.25 Aligned_cols=417 Identities=9% Similarity=0.020 Sum_probs=223.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHh--CCCCHHHHHHHHHhchhcCCCcCHHHHHHHHHH
Q 004470 188 FDIFFQVLVEARKLNEARKLFEKLLNYGLVISVDSCNLFLSRLSN--TCDGLRMVVKSFTEFPELGICWNTASYNIMIHC 265 (751)
Q Consensus 188 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~l~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 265 (751)
....+....+.|+..++..+...+... | ...|... ..+.. .....++...++++-... +.........+..
T Consensus 9 ~y~~a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~-~~l~~~~~~~~~~~i~~Fl~~~p~~--P~~~~lr~~~l~~ 81 (450)
T d1qsaa1 9 RYAQIKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEY-RQITDDLMNQPAVTVTNFVRANPTL--PPARTLQSRFVNE 81 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHH-HHHHHTGGGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHH-HHHHhccccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHH
Confidence 345667778889988888877776433 3 2222211 11111 123445555544443322 1112223344667
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 004470 266 LCRFGKIKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEA 345 (751)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 345 (751)
+.+.+++++.+..+. ..+.+...--....+....|+.++|.+.+..+-..|.. .+..+
T Consensus 82 L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c---------------- 139 (450)
T d1qsaa1 82 LARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNAC---------------- 139 (450)
T ss_dssp HHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHH----------------
T ss_pred HHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHH----------------
Confidence 778888877555442 22234544446667778889988888887777655422 22223
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004470 346 ETILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEAEKLFHEMLGR 425 (751)
Q Consensus 346 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 425 (751)
..++..+.+.| ..+...+-.-+......|+...|..+...+.. .........+........+.... ..
T Consensus 140 ~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~p~~~~~~~------~~- 207 (450)
T d1qsaa1 140 DKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANNPNTVLTFA------RT- 207 (450)
T ss_dssp HHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHCGGGHHHHH------HH-
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhChHhHHHHH------hc-
Confidence 33444444444 23444444555666667777777777654432 12233344443333222222211 11
Q ss_pred CCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004470 426 GLEPDEIVYTALIDGYCK--AGGMKKAFSLHNNMVHMRLTPNVVTYTALA----DGLCKSGELETANELLHEMCRKGLQL 499 (751)
Q Consensus 426 ~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~~ 499 (751)
..++......+..++.+ ..+.+.|..++......... +...+...- ..+...+..+.+...+......+.
T Consensus 208 -~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~-- 283 (450)
T d1qsaa1 208 -TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-- 283 (450)
T ss_dssp -SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--
T ss_pred -CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--
Confidence 12233333333333322 34667777777776543322 222222222 222334566777777776665533
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004470 500 NIYTYNSIVNGLCKAGNILQAVKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMN 579 (751)
Q Consensus 500 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 579 (751)
+.....-.+......+++..+...+..|.... .....-.--+..++...|+.++|...|..+... ++ -|..|..
T Consensus 284 ~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa 357 (450)
T d1qsaa1 284 STSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA 357 (450)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHH
Confidence 34433444555566788888888888775432 233444566778888899999999999887642 33 2333322
Q ss_pred HHHhcCChhHHHHHHHHHHHcCC--CCCH-h---hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004470 580 GFCMSGMIEDGEKLLKWMLEKGL--KPNA-A---TYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK 653 (751)
Q Consensus 580 ~~~~~g~~~~A~~l~~~~~~~g~--~p~~-~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 653 (751)
.+.|..-. +-...+ .++. . .-...+..+...|....|...+..+... .+......+.....+
T Consensus 358 --~~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~ 425 (450)
T d1qsaa1 358 --QRIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFN 425 (450)
T ss_dssp --HHTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHH
T ss_pred --HHcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 12221100 000000 0000 0 0112345567889999999999888753 245566677888889
Q ss_pred cCCHHHHHHHHHHH
Q 004470 654 ARNMKEAWFLHKEM 667 (751)
Q Consensus 654 ~g~~~~A~~~~~~~ 667 (751)
.|.++.|+....+.
T Consensus 426 ~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 426 NQWWDLSVQATIAG 439 (450)
T ss_dssp TTCHHHHHHHHHHT
T ss_pred CCChhHHHHHHHHH
Confidence 99999999877665
|