Citrus Sinensis ID: 004480
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 750 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GYL7 | 852 | Pentatricopeptide repeat- | yes | no | 0.98 | 0.862 | 0.564 | 0.0 | |
| Q3ECK2 | 548 | Pentatricopeptide repeat- | no | no | 0.437 | 0.598 | 0.272 | 2e-28 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.513 | 0.446 | 0.234 | 3e-27 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.569 | 0.571 | 0.231 | 3e-27 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.568 | 0.520 | 0.220 | 4e-26 | |
| Q0WMY5 | 952 | Pentatricopeptide repeat- | no | no | 0.501 | 0.394 | 0.241 | 5e-26 | |
| Q9M9X9 | 987 | Pentatricopeptide repeat- | no | no | 0.528 | 0.401 | 0.239 | 5e-26 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.489 | 0.330 | 0.223 | 2e-25 | |
| Q8L844 | 709 | Pentatricopeptide repeat- | no | no | 0.505 | 0.534 | 0.224 | 2e-25 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.589 | 0.596 | 0.224 | 1e-24 |
| >sp|Q8GYL7|PP361_ARATH Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/753 (56%), Positives = 544/753 (72%), Gaps = 18/753 (2%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNSS-FTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 600
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
IK+C +K LK AFSLFEEM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM
Sbjct: 601 IKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRN 660
Query: 650 AGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAA 709
AGYK ND +LKELIEEWCEGVIQ+ Q+Q +++ N+ RP SLL+EKVA H+Q+ A
Sbjct: 661 AGYKPNDHFLKELIEEWCEGVIQENGQSQDKISDQEGDNAGRPVSLLIEKVATHMQERTA 720
Query: 710 ENLAIDLRGLTKVEARIIVLAVLRMMKENYSLG 742
NLAIDL+GLTK+EAR++VLAVLRM+KE+Y G
Sbjct: 721 GNLAIDLQGLTKIEARLVVLAVLRMIKEDYMRG 753
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 170/349 (48%), Gaps = 21/349 (6%)
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
M ++G D+ +YN ++ + C T + + K +E KG+ + +V TY+ +V
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLC---KTKRVNDAFDFFKEIERKGI-RPNVVTYTALVNGLC 236
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
++ W A ++ DM+ +TPN IT+S+L++A G V +A LFEEM++ +P+
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296
Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
+ L+ C DR + + L ++ L + NT + N K K+
Sbjct: 297 TYSSLING---LCLHDRIDEANQMFDLMVSKGCLADVVSYNT--LINGFCKAKRVEDGMK 351
Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWT 552
F S T TYN L++ D + + ++M G+SP+ ++
Sbjct: 352 LFREMSQRG-------LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404
Query: 553 ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612
IL+ +G +E AL I + M++ M D+V YTT I+ ++ ++++A+SLF +
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 464
Query: 613 QIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKE 661
++P++VTY T++ G LHEV+ A+Y M + G ND L +
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVE---ALYTKMKQEGLMKNDCTLSD 510
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/444 (23%), Positives = 193/444 (43%), Gaps = 59/444 (13%)
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
G++ L L +D S +++ +I+ G G Y S + + ++++ ++ +
Sbjct: 151 LGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPS 210
Query: 291 IYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
I +N+++N A D + L ++ M+ G+ D+ +YN LL AC + G L E
Sbjct: 211 ILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRG---LGDEAE 267
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
+ + G++ D+ TYS +V+ F + + + +M S G P+ +++ L+ A
Sbjct: 268 MVFRTMNDGGIVP-DLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEA 326
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
A +G +++AM +F +M AGC PN+ ++LL ++ ++D +LF S
Sbjct: 327 YAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSS----- 381
Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
NTD P TYNIL++
Sbjct: 382 -------NTD-----------------------------------PDAATYNILIEVFGE 399
Query: 528 DYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVA 585
Y V L ++M + P+ ++ +I ACG G E A +IL+ M + + P A
Sbjct: 400 GGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKA 459
Query: 586 YTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQ 645
YT I+ ++ ++A F M P++ T+ +LL + +R G + E + L+
Sbjct: 460 YTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLV 519
Query: 646 DMWKAGYKANDTYLKELIEEWCEG 669
D +G N IE + +G
Sbjct: 520 D---SGIPRNRDTFNAQIEAYKQG 540
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Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 111/480 (23%), Positives = 213/480 (44%), Gaps = 53/480 (11%)
Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
KR++ A + + SPN++ +I G+ + +++ + ++ N+
Sbjct: 183 KRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVT 242
Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
+N+L++ + ++ ++M G+ ++ SYN+++ C G +E+ +
Sbjct: 243 YNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRM---KEVSFVLT 299
Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
+ +G LD TY+T++K + + AL + +ML G+TP+ IT++SLI++ A
Sbjct: 300 EMNRRGY-SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358
Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVAL 468
G + +AM ++M G PN + L+ + + A+R+ R S + V
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418
Query: 469 GEDYDGN------TDRISNMEHKDKQSITNTPNFVPNSH-YSSFDKRF------------ 509
+G+ D I+ +E ++ + +P+ V S S F + +
Sbjct: 419 NALINGHCVTGKMEDAIAVLEDMKEKGL--SPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Query: 510 ---SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
KP T TY+ L++ C +A L EM VGL P+ ++T LI+A G++
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDL 536
Query: 565 EGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY--- 621
E ALQ+ M E G+ PDVV Y+ I + R ++A L ++ + + P+ VTY
Sbjct: 537 EKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTL 596
Query: 622 ------------ITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEG 669
++L++ G + E Q V++ M +K + T +I C
Sbjct: 597 IENCSNIEFKSVVSLIKGFCMKGMMTEADQ---VFESMLGKNHKPDGTAYNIMIHGHCRA 653
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/458 (22%), Positives = 213/458 (46%), Gaps = 32/458 (6%)
Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--L 309
+ P+++ T++ G + +I+E++R+ NI FN+ + + + KFT +
Sbjct: 380 TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMM 439
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
+++ + G+ D+ ++N LL + G + E+ G K ++ G + + T++T+
Sbjct: 440 KIFDEINVCGLSPDIVTWNTLL---AVFGQNGMDSEVSGVFKEMKRAGFVP-ERETFNTL 495
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+ ++ ++ A+ V ML AGVTP+ T+++++ A A G+ EQ+ + EM C
Sbjct: 496 ISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRC 555
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
+PN LL A + L E Y G + + + K
Sbjct: 556 KPNELTYCSLLHAYANGKEIGLMHSLAE------------EVYSGVIEPRAVL-LKTLVL 602
Query: 490 ITNTPNFVPNSH--YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
+ + + +P + +S +R F P TT N ++ KA +++ M+ G +
Sbjct: 603 VCSKCDLLPEAERAFSELKER-GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFT 661
Query: 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605
P+ ++ L+ S + + +IL+ + G+ PD+++Y T I R+ R++ A +
Sbjct: 662 PSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRI 721
Query: 606 FEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEE 665
F EM++ I P+++TY T + + Y + ++ + V + M K G + N +++
Sbjct: 722 FSEMRNSGIVPDVITYNTFIGS---YAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778
Query: 666 WCEGVIQDKNQNQGEVTLCRRTNSQRPQS---LLLEKV 700
+C+ + K++ + V R + P+ LLE++
Sbjct: 779 YCK--LNRKDEAKLFVEDLRNLDPHAPKGEDLRLLERI 814
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 182/405 (44%), Gaps = 29/405 (7%)
Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNM 315
I T++D + D K +++ L+ T + + L+N+ K + LEV + M
Sbjct: 451 IYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVM 510
Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
++ GV ++ +Y++++ + A ++ ++ K +K DV Y+ I+ F
Sbjct: 511 KEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM----VKEGMKPDVILYNNIISAFCG 566
Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
A++ ++M P T T+ +I+ A +G + +++ +F+ M + GC P
Sbjct: 567 MGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHT 626
Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH---KDKQSITN 492
N L+ VE Q ++A + TL+ +S EH K Q +
Sbjct: 627 FNGLINGLVEKRQMEKAVEILDEMTLAG---------------VSANEHTYTKIMQGYAS 671
Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHIS 550
+ Y + + TY L+KACC AL EM + N
Sbjct: 672 VGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFV 731
Query: 551 WTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610
+ ILID G+V A +++ M+++G+ PD+ YT+ I C ++ + +A EEM+
Sbjct: 732 YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME 791
Query: 611 HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN 655
++PN+ TY TL++ +R SL E + L+ Y++M G K +
Sbjct: 792 ALGVKPNIKTYTTLIKGWAR-ASLPE--KALSCYEEMKAMGIKPD 833
|
May play a role in the plastid ribosome biogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 116/484 (23%), Positives = 193/484 (39%), Gaps = 88/484 (18%)
Query: 243 AYDASKKHLSSPNM--YICRTIIDVCGICGDYMK--------SRAIYEDLRSQNVTLNIY 292
AY KK + +M Y+ I+ + ICGD + Y ++ + V LN
Sbjct: 391 AYKLLKKMVKCGHMPGYVVYNIL-IGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKI 449
Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
+S +A + V + M G + D ++Y+ +L C A LA ++ E+
Sbjct: 450 NVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM 509
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
K +G L DV+TY+ +V F A + A K +M G TPN +T+++LI+A
Sbjct: 510 K----RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 565
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
A V A LFE ML GC PN + L+ +A Q ++A ++F SK
Sbjct: 566 AKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK------- 618
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
+ P+ + ++ +D S +P TY L+ C +
Sbjct: 619 ---------------------DVPDV--DMYFKQYDDN-SERPNVVTYGALLDGFCKSHR 654
Query: 531 --RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM--------- 579
+ L++ M G PN I + LID G ++ A ++ M E G
Sbjct: 655 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 714
Query: 580 --------------------------SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613
+P+VV YT I + + +A+ L + M+
Sbjct: 715 LIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 774
Query: 614 IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQD 673
QPN+VTY ++ +G + +++ CL + + M G N + LI+ C+ D
Sbjct: 775 CQPNVVTYTAMIDG---FGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALD 831
Query: 674 KNQN 677
N
Sbjct: 832 VAHN 835
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 176/402 (43%), Gaps = 35/402 (8%)
Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
+ +++ + + N+Y F + V A + E+ K M G D+ +Y +L+ A
Sbjct: 244 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 303
Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
C A A+E++ ++K G K D TY T++ F+D + + +M G
Sbjct: 304 CTARKLDCAKEVFEKMK----TGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGH 359
Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
P+ +T++ L++A AG +A + M G PN N L+ + + D A
Sbjct: 360 VPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALE 419
Query: 455 LFRSW------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITN-TPNFVP-NSHYSSFD 506
LF + + T + + Y + D +S +E +K PN V N+ S
Sbjct: 420 LFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 479
Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
K + K + ++ +GL P+ +++ +++ G ++
Sbjct: 480 KAGRDR------------------EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDE 521
Query: 567 ALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626
A+++L M E+G PDV+ + I ++ R+ +A+ +F MK +++P +VTY TLL
Sbjct: 522 AIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLA 581
Query: 627 ARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668
+ G ++Q+ + +++ M + G N L + C+
Sbjct: 582 GLGKNG---KIQEAIELFEGMVQKGCPPNTITFNTLFDCLCK 620
|
Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 106/472 (22%), Positives = 196/472 (41%), Gaps = 93/472 (19%)
Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
L + + F K D AL+ ++ S +II G +++ A++E+L
Sbjct: 271 LVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEEL 330
Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
R + +N+L+ V LK + M+K GV D +Y++L+ A AG
Sbjct: 331 RQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRW 390
Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
A+ + +K +EA G ++ + F +S ++ F D WQ +V ++M S GV P+
Sbjct: 391 ESARIV---LKEMEA-GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQF 446
Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
++ +I+ ++ AM F+ ML G EP+ N L+ C+ R
Sbjct: 447 YNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDC---HCKHGR--------- 494
Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
+ V + + ++R P TTYNI
Sbjct: 495 ----------------------------------HIVAEEMFEAMERRGCL-PCATTYNI 519
Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQIL------- 571
++ + + +K L+ +M++ G+ PN ++ T L+D G SG A++ L
Sbjct: 520 MINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVG 579
Query: 572 ----------------------------KIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603
++M DG+ P ++A + I +R +AF
Sbjct: 580 LKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAF 639
Query: 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN 655
++ + MK ++P++VTY TL++A R + + Q+ VY++M +G K +
Sbjct: 640 AVLQYMKENGVKPDVVTYTTLMKALIR---VDKFQKVPVVYEEMIMSGCKPD 688
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 109/485 (22%), Positives = 205/485 (42%), Gaps = 43/485 (8%)
Query: 194 EFRIVQLCVNKPDVNLAIRYACIVPR-----------------ADIL-FCNFVREFGKKR 235
EF V +C N N+ I + C + R D++ + V + +
Sbjct: 236 EFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFG 295
Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDV-CGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
+L + + K+ PN YI +II + C IC A E +R Q + + V+
Sbjct: 296 ELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR-QGILPDTVVY 354
Query: 295 NSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
+L++ D++ + + M + D+ +Y ++ C G+ V A +++ E
Sbjct: 355 TTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE--- 411
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+ KG L+ D T++ ++ + A + A +V M+ AG +PN +T+++LI+ G
Sbjct: 412 MFCKG-LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEG 470
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
++ A L EM + G +PN N ++ ++ + A +L V E
Sbjct: 471 DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL----------VGEFEAA 520
Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YY 530
N D ++ D + + K +PT T+N+LM C
Sbjct: 521 GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK--GLQPTIVTFNVLMNGFCLHGMLE 578
Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAI 590
+ L+N M G++PN ++ L+ N++ A I K M G+ PD Y +
Sbjct: 579 DGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLV 638
Query: 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650
K +++ +K+A+ LF+EMK ++ TY L++ + E ++ V+ M +
Sbjct: 639 KGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEARE---VFDQMRRE 695
Query: 651 GYKAN 655
G A+
Sbjct: 696 GLAAD 700
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 750 | ||||||
| 225439759 | 842 | PREDICTED: pentatricopeptide repeat-cont | 0.932 | 0.830 | 0.641 | 0.0 | |
| 224068636 | 828 | predicted protein [Populus trichocarpa] | 0.92 | 0.833 | 0.640 | 0.0 | |
| 449448705 | 849 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.872 | 0.596 | 0.0 | |
| 30679784 | 852 | pentatricopeptide repeat-containing prot | 0.98 | 0.862 | 0.564 | 0.0 | |
| 449521499 | 855 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.990 | 0.869 | 0.587 | 0.0 | |
| 39104565 | 852 | unknown protein [Arabidopsis thaliana] | 0.98 | 0.862 | 0.563 | 0.0 | |
| 255568444 | 786 | pentatricopeptide repeat-containing prot | 0.846 | 0.807 | 0.622 | 0.0 | |
| 356572391 | 811 | PREDICTED: pentatricopeptide repeat-cont | 0.934 | 0.864 | 0.556 | 0.0 | |
| 357510555 | 829 | Pentatricopeptide repeat-containing prot | 0.873 | 0.790 | 0.570 | 0.0 | |
| 7413558 | 798 | putative protein [Arabidopsis thaliana] | 0.902 | 0.848 | 0.496 | 0.0 |
| >gi|225439759|ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Vitis vinifera] gi|297741486|emb|CBI32618.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/716 (64%), Positives = 557/716 (77%), Gaps = 17/716 (2%)
Query: 40 LASSSSLSSIPTVHS--SQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESV 97
L +S+S P + S S+ LLS VR DL++ Y+D+A+KL +DGR ++F+ + E++
Sbjct: 36 LLTSTSARLSPPISSLRSRHPLLSDVRWDLNN----YSDLATKLVQDGRFDDFSTMAETL 91
Query: 98 VVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157
++S +S+ +E+V++GI +REGR+ CVV VL+K+++LG+ PLELFDGS +L
Sbjct: 92 ILSGVELSQL-----VELVSAGISGLLREGRVYCVVEVLRKVDKLGICPLELFDGSTLEL 146
Query: 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217
L EC+R+L+ G+VE V L+E+L+ F PVK+L E +++CVNK + NLA+RYACI+
Sbjct: 147 LSKECRRILNCGQVEEVVELIEILDGFHFPVKKLLEPLDFIKICVNKRNPNLAVRYACIL 206
Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
P A ILFC + EFGKKRDL SAL A++ASK+ L PNMY RT+IDVCG+C Y KSR
Sbjct: 207 PHAQILFCTIIHEFGKKRDLGSALTAFEASKQKLIGPNMYCYRTMIDVCGLCSHYQKSRY 266
Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
IYE+L +Q +T NIYVFNSLMNVN HDL +T VYKNMQ LGV ADMASYNILLKACC+A
Sbjct: 267 IYEELLAQKITPNIYVFNSLMNVNVHDLSYTFNVYKNMQNLGVTADMASYNILLKACCVA 326
Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
G LAQEIY EV++LE+ G+LKLDVFTYSTI+KVFADAK WQMALK+KEDMLSAGV PN
Sbjct: 327 GRVDLAQEIYREVQNLESNGMLKLDVFTYSTIIKVFADAKLWQMALKIKEDMLSAGVIPN 386
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
T+TWS+LI++CANAG+ EQA+ LF+EML AGCEPNSQC NILL ACVEACQ+DRAFRLF+
Sbjct: 387 TVTWSALISSCANAGITEQAIQLFKEMLLAGCEPNSQCYNILLHACVEACQYDRAFRLFQ 446
Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
SW S+ Q +E K + IT+ PN + NSH+ SF K F F PTTTT
Sbjct: 447 SWKDSRFQEI---SGGTGNGNTVGVELKHQNCITSMPNCLSNSHHLSFSKSFPFTPTTTT 503
Query: 518 YNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577
YNILMKAC TDYYR KALM+EM+T GLSPNHISW+ILID CGG+GN+ GA++ILK MRE
Sbjct: 504 YNILMKACGTDYYRAKALMDEMKTAGLSPNHISWSILIDICGGTGNIVGAVRILKTMREA 563
Query: 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEV 637
G+ PDVVAYTTAIK CV SK LK AFSLF EMK YQIQPNLVTY TLLRARSRYGSLHEV
Sbjct: 564 GIKPDVVAYTTAIKYCVESKNLKIAFSLFAEMKRYQIQPNLVTYNTLLRARSRYGSLHEV 623
Query: 638 QQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLL 697
QQCLA+YQ M KAGYK+ND YLKELIEEWCEGVIQD N NQ + + R + RPQSLLL
Sbjct: 624 QQCLAIYQHMRKAGYKSNDYYLKELIEEWCEGVIQDNNLNQSKFSSVNRADWGRPQSLLL 683
Query: 698 EKVAVHLQKSAAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLG---TDEFHIML 750
EKVA HLQKS AE+LAIDL+GLT+VEARI+VLAVLRM+KENY LG D+ I+L
Sbjct: 684 EKVAAHLQKSVAESLAIDLQGLTQVEARIVVLAVLRMIKENYILGHPIKDDILIIL 739
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068636|ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|222833355|gb|EEE71832.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/699 (64%), Positives = 533/699 (76%), Gaps = 9/699 (1%)
Query: 49 IPTVHSSQTALLSTV----RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNV 104
IP VHS LLST+ + SS DY+A++ASKLA+DGRL++F MI ESV+ S
Sbjct: 45 IPAVHSRSPPLLSTIPFRQNHNSSSLLDYHANLASKLAEDGRLQDFVMIAESVIASGVEP 104
Query: 105 SKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR 164
S F + LS+ VA GI K++++G +DCVV LKK ELGV+ L+ DG LLK E R
Sbjct: 105 SSFVAALSVGPVAKGISKNLQQGNVDCVVRFLKKTEELGVSTLKFLDGVAIDLLKKEFIR 164
Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP-RADIL 223
+++ G+VE V +ME L F KEL + I+++CV+K + +A+RYA I P IL
Sbjct: 165 IVNCGDVEQVVYIMETLAGFCFSFKELVDPSYIIKICVDKLNPKMAVRYAAIFPGEGRIL 224
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
FCN + EFG+K L SAL AYD +K LS PNMY+ RTIIDVCG+CGDYMKSR IYEDL
Sbjct: 225 FCNIISEFGRKGHLDSALVAYDEAKHKLSVPNMYLHRTIIDVCGLCGDYMKSRYIYEDLI 284
Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
++ V N+YVFNSLMNVNAHDL +T V+KNMQ LGV AD+ASYNILLKACC+AG LA
Sbjct: 285 NRKVIPNVYVFNSLMNVNAHDLGYTFSVFKNMQNLGVTADVASYNILLKACCIAGRVDLA 344
Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
++IY EVK LE+ VLKLDVFTY IVK+FADAK WQMALK+KEDMLS+GVTPN WSS
Sbjct: 345 KDIYREVKQLESAEVLKLDVFTYCMIVKIFADAKMWQMALKIKEDMLSSGVTPNMHIWSS 404
Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
LI+ACANAGLVEQA+ LFEEML +GC+PNSQCCNILL ACV+ACQ+DRAFRLF+ W S+
Sbjct: 405 LISACANAGLVEQAIQLFEEMLLSGCKPNSQCCNILLHACVQACQYDRAFRLFQCWKGSE 464
Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
Q D+ GN D I EH K N VPNSH+ +F K+F F PT TY++LMK
Sbjct: 465 AQEVFHGDHSGNADEI---EHAQKHC-PNMTTIVPNSHHLNFIKKFPFTPTPATYHMLMK 520
Query: 524 ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583
AC +DY+R KALM+EM+TVG+SPNHISW+ILID CG SGNV GA+QILK MR G+ PDV
Sbjct: 521 ACGSDYHRAKALMDEMKTVGISPNHISWSILIDICGVSGNVSGAVQILKNMRMAGVEPDV 580
Query: 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAV 643
VAYTTAIKVCV +K LK AFSLF EMK QI PNLVTY TLLRAR+RYGSL EVQQCLA+
Sbjct: 581 VAYTTAIKVCVETKNLKLAFSLFAEMKRCQINPNLVTYNTLLRARTRYGSLREVQQCLAI 640
Query: 644 YQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVH 703
YQDM KAGYK+ND YLK+LIEEWCEGVIQD NQ QG C+RT+ RP+SLLLEKVA H
Sbjct: 641 YQDMRKAGYKSNDYYLKQLIEEWCEGVIQDNNQIQGGFASCKRTDLGRPRSLLLEKVAAH 700
Query: 704 LQKSAAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLG 742
LQ + +ENLAIDL+GLTKVEARI+VLAVLRM+KENY+LG
Sbjct: 701 LQNNISENLAIDLQGLTKVEARIVVLAVLRMIKENYTLG 739
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448705|ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/765 (59%), Positives = 564/765 (73%), Gaps = 24/765 (3%)
Query: 1 MRV--VFGSSSSSSSAIVATQTRLYNHRN-KPNKHPVTKLFPLASSSSLSSIPTVHSSQT 57
MRV + GSSS+S + R Y H + K K ++ L P + SS + S
Sbjct: 1 MRVFLILGSSSASIAG-----PRRYRHSHCKAPKSSLSNLSPTGTHLPFSSHTSTRHSPP 55
Query: 58 ALLSTVRRDLSSRND-------YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASM 110
ALLS+V D++ + +YA +ASKLA+ G+LE+FAM+VESVVV+ S+F +M
Sbjct: 56 ALLSSVELDIAGASSGGRIPIQHYAGVASKLAEGGKLEDFAMVVESVVVAGVEPSQFGAM 115
Query: 111 LSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE 170
L++E+VA GI + +REG++ VV VL+K+ ELG++ LEL D + L+ +C+R+ SGE
Sbjct: 116 LAVELVAKGISRCLREGKVWSVVQVLRKVEELGISVLELCDEPAVESLRRDCRRMAKSGE 175
Query: 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230
+E V LMEVL F V+E+ + +++LCV+ + +AIRYA I+P ADILFC + E
Sbjct: 176 LEELVELMEVLSGFGFSVREMMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINE 235
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
FGKKRDL SA AY SK +++ NMYI RTIIDVCG+CGDY KSR IY+DL +QNV N
Sbjct: 236 FGKKRDLKSAYIAYTESKANMNGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVIPN 295
Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
I+VFNSLMNVNAHDL +T ++YKNMQ LGV ADMASYNILLKACCLAG LAQ+IY EV
Sbjct: 296 IFVFNSLMNVNAHDLNYTFQLYKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYREV 355
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
KHLE GVLKLDVFTYSTIVKVFADAK W+MAL+VKEDM SAGV+PN +TWSSLI++CAN
Sbjct: 356 KHLETTGVLKLDVFTYSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCAN 415
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
+GLVE A+ LFEEM+ AGCEPN+QCCN LL ACVE QFDRAFRLFRSW + ++ G
Sbjct: 416 SGLVELAIQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSW--KEKELWDGI 473
Query: 471 DYDGNTDRISNMEHKDKQSITNT--PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
+ +TD +N++ + NT PN + H SF F+FKPT TTYNILMKAC TD
Sbjct: 474 ERKSSTD--NNLDADSTSQLCNTKMPNAPSHVHQISFVGNFAFKPTITTYNILMKACGTD 531
Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTT 588
YY KALM EM++VGL+PNHISW+IL+D CG S +VE A+QIL MR G+ PDVVAYTT
Sbjct: 532 YYHAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQILTTMRMAGVDPDVVAYTT 591
Query: 589 AIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648
AIKVCV K K AFSLFEEMK ++IQPNLVTY TLLRARS YGSLHEVQQCLA+YQDM
Sbjct: 592 AIKVCVEGKNWKLAFSLFEEMKRFEIQPNLVTYSTLLRARSTYGSLHEVQQCLAIYQDMR 651
Query: 649 KAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSA 708
K+G+K+ND YLKELI EWCEGVIQ NQ E+T C + + +P+ L+LEKVA HLQKS
Sbjct: 652 KSGFKSNDHYLKELIAEWCEGVIQKNNQQPVEITPCNKIDIGKPRCLILEKVADHLQKSF 711
Query: 709 AENLAIDLRGLTKVEARIIVLAVLRMMKENYSLG---TDEFHIML 750
AE+L IDL+ LTKVEARI+VLAVLRM+KENY+LG D+ I+L
Sbjct: 712 AESLTIDLQELTKVEARIVVLAVLRMIKENYALGESVKDDIFIIL 756
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30679784|ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02830, chloroplastic; Flags: Precursor gi|332003140|gb|AED90523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/753 (56%), Positives = 544/753 (72%), Gaps = 18/753 (2%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNSS-FTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 600
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
IK+C +K LK AFSLFEEM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM
Sbjct: 601 IKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRN 660
Query: 650 AGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAA 709
AGYK ND +LKELIEEWCEGVIQ+ Q+Q +++ N+ RP SLL+EKVA H+Q+ A
Sbjct: 661 AGYKPNDHFLKELIEEWCEGVIQENGQSQDKISDQEGDNAGRPVSLLIEKVATHMQERTA 720
Query: 710 ENLAIDLRGLTKVEARIIVLAVLRMMKENYSLG 742
NLAIDL+GLTK+EAR++VLAVLRM+KE+Y G
Sbjct: 721 GNLAIDLQGLTKIEARLVVLAVLRMIKEDYMRG 753
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521499|ref|XP_004167767.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/769 (58%), Positives = 560/769 (72%), Gaps = 26/769 (3%)
Query: 1 MRV--VFGSSSSSSSAIVATQTRLYNHRN-KPNKHPVTKLFPLASSSSLSSIPTVHSSQT 57
MRV + GSSS+S + R Y H + K K ++ L P + SS + S
Sbjct: 1 MRVFLILGSSSASIAG-----PRRYRHSHCKAPKSSLSNLSPTGTHLPFSSHTSTRHSPP 55
Query: 58 ALLSTVRRDLSSRND-------YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASM 110
ALLS+V D++ + +YA +ASKLA+ G+LE+FAM+VESVVV+ S+F +M
Sbjct: 56 ALLSSVELDIAGASSGGRIPIQHYAGVASKLAEGGKLEDFAMVVESVVVAGVEPSQFGAM 115
Query: 111 LSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE 170
L++E+VA GI + +REG++ VV VL+K+ ELG++ LEL D + L+ +C+R+ SGE
Sbjct: 116 LAVELVAKGISRCLREGKVWSVVQVLRKVEELGISVLELCDEPAVESLRRDCRRMAKSGE 175
Query: 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230
+E V LMEVL F V+E+ + +++LCV+ + +AIRYA I+P ADILFC + E
Sbjct: 176 LEELVELMEVLSGFGFSVREMMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINE 235
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
FGKKRDL SA AY SK +++ NMYI RTIIDVCG+CGDY KSR IY+DL +QNVT N
Sbjct: 236 FGKKRDLKSAYIAYTESKANMNGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVTPN 295
Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
I+VFNSLMNVNAHDL +T ++YKNMQ LGV ADMASYNILLKACCLAG LAQ+IY EV
Sbjct: 296 IFVFNSLMNVNAHDLNYTFQLYKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYREV 355
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
KHLE GVLKLDVFTYSTIVKVFADAK W+MAL+VKEDM SAGV+PN +TWSSLI++CAN
Sbjct: 356 KHLETTGVLKLDVFTYSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCAN 415
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
+GLVE A+ LFEEM+ AGCEPN+QCCN LL ACVE QFDRAFRLFRSW + ++ G
Sbjct: 416 SGLVELAIQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSW--KEKELWDGI 473
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
+ +TD + + + T PN + H SF +FKPT TTYNILMKAC TDYY
Sbjct: 474 ERKSSTDNNLDADSTSQLCTTKMPNAPSHVHQISFVGNLAFKPTITTYNILMKACGTDYY 533
Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAI 590
KALM EM++VGL+PNHISW+IL+D CG S +VE A+QIL MR G+ PDVVAYTTAI
Sbjct: 534 HAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQILTTMRMAGVDPDVVAYTTAI 593
Query: 591 KVCVRSKRL------KQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644
KV + L K AFSLFEEMK ++IQPNLVTY TLLRARS YGSLHEVQQCLA+Y
Sbjct: 594 KVSIPLAVLVLKXNWKLAFSLFEEMKGFEIQPNLVTYSTLLRARSTYGSLHEVQQCLAIY 653
Query: 645 QDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHL 704
QDM K+G+K+ND YLKELI EWCEGVIQ NQ E+T C + + +P+ L+LEKVA HL
Sbjct: 654 QDMRKSGFKSNDHYLKELIAEWCEGVIQKNNQQPVEITPCNKIDIGKPRCLILEKVADHL 713
Query: 705 QKSAAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLG---TDEFHIML 750
QKS AE+L IDL+ LTKVEARI+VLAVLRM+KENY+LG D+ I+L
Sbjct: 714 QKSFAESLTIDLQELTKVEARIVVLAVLRMIKENYALGESVKDDIFIIL 762
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|39104565|dbj|BAC42187.2| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/753 (56%), Positives = 544/753 (72%), Gaps = 18/753 (2%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNSS-FTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 600
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
IK+C +K LK AFSLFEEM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM
Sbjct: 601 IKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRN 660
Query: 650 AGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAA 709
AGYK ND +LKELIEEWCEGVIQ+ ++Q +++ N+ RP SLL+EKVA H+Q+ A
Sbjct: 661 AGYKPNDHFLKELIEEWCEGVIQENGRSQDKISDQEGDNAGRPVSLLIEKVATHMQERTA 720
Query: 710 ENLAIDLRGLTKVEARIIVLAVLRMMKENYSLG 742
NLAIDL+GLTK+EAR++VLAVLRM+KE+Y G
Sbjct: 721 GNLAIDLQGLTKIEARLVVLAVLRMIKEDYMRG 753
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568444|ref|XP_002525196.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535493|gb|EEF37162.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/635 (62%), Positives = 482/635 (75%)
Query: 108 ASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLD 167
+S L + +A GI K++RE +D VV L ++LG+ P +LFD + LLK EC R+++
Sbjct: 41 SSGLHMIALAKGISKNLRERNVDSVVDALNTADQLGLPPSQLFDAASMDLLKTECLRIVN 100
Query: 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227
G +E + LME L + +KEL E R+++LCV++ + +LA+RYA + P IL C+
Sbjct: 101 FGRLEDIILLMETLAGYSFSIKELVEPSRVIKLCVHQRNPHLAVRYARLFPHEGILMCSI 160
Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
V++FGKK DL SAL AY+A +H + P+MY+ R +IDVCG+CGDYM+SR I+ED+ SQ V
Sbjct: 161 VKQFGKKGDLDSALAAYEAYMQHSTVPDMYLYRALIDVCGLCGDYMQSRYIFEDIVSQKV 220
Query: 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
NI+VFNSLMNVNAHDL +TL VYK MQ LGV ADM SYNILLK+C LAG LAQ+IY
Sbjct: 221 IPNIFVFNSLMNVNAHDLGYTLHVYKKMQNLGVTADMTSYNILLKSCSLAGKVDLAQDIY 280
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
E K LE G+LKLD FTY TI+K+FADAK WQ+ALK+KEDMLS+GVTPNT TWSSLI+A
Sbjct: 281 REAKQLELAGLLKLDDFTYCTIIKIFADAKLWQLALKIKEDMLSSGVTPNTFTWSSLISA 340
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
ANAGLV+QA+ LFEEML AGC PNS CCNILL ACVEACQ+DRAFRLF +W S+ Q
Sbjct: 341 SANAGLVDQAIKLFEEMLLAGCVPNSHCCNILLHACVEACQYDRAFRLFNAWKGSEIQNT 400
Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
DY+ D IS+ H + I PN NS + SF K+F F P++ TYN LMKAC +
Sbjct: 401 FTTDYNCPVDDISSAMHACEDYIITVPNLASNSLHLSFLKKFPFTPSSATYNTLMKACGS 460
Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587
DY R KALM+EM+ VGLSPNHISW+ILID CG SGN+EGA+QILK MR G+ PDV+AYT
Sbjct: 461 DYNRAKALMDEMQAVGLSPNHISWSILIDICGSSGNMEGAIQILKNMRMAGIEPDVIAYT 520
Query: 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDM 647
TAIKV V SK LK AFSLF EMK YQ++PNLVTY TLLRAR+RYGSL EVQQCLA+YQDM
Sbjct: 521 TAIKVSVESKNLKMAFSLFAEMKRYQLKPNLVTYDTLLRARTRYGSLKEVQQCLAIYQDM 580
Query: 648 WKAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKS 707
KAGYK+ND YLK+LIEEWCEGVIQD +Q Q + C+R RP SLLLEKVA HL +
Sbjct: 581 RKAGYKSNDNYLKQLIEEWCEGVIQDNDQCQDDFKPCKRAEFGRPHSLLLEKVAAHLHHN 640
Query: 708 AAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLG 742
AE+L++DL+GLTKVEARI+VLAVLRM+KENY G
Sbjct: 641 VAESLSVDLQGLTKVEARIVVLAVLRMVKENYIQG 675
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572391|ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/742 (55%), Positives = 520/742 (70%), Gaps = 41/742 (5%)
Query: 3 VVFGSSSSSSSAIVATQTRLYNHRNKPNKHP-VTKLFPLASSSSLSSIPTVHSSQTALLS 61
V+ GSS + + +T + H KP P + KL P +S+ ++S AL
Sbjct: 5 VILGSSVVTPFSSSSTPHHQHRHPIKPPHKPSLPKLAPFSSNWNIS---------CAL-- 53
Query: 62 TVRRDLSSRNDYYADMASKLAKDGRL-EEFAMIVESVVVSEGNVSKFASMLSLEMVASGI 120
A +A D +L +EF ++ E + S ++ E++A +
Sbjct: 54 ------------QAPLALSHCADSKLVQEFEVVFEDFIDS--------GVVDAELLAKVV 93
Query: 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEV 180
+ IR ++ V+ L K+ ++ +GS ++ EC RL+ VE V LMEV
Sbjct: 94 LLGIRGKKVRSVIHALNKVQGRRISLSTHLNGS--DIIAKECCRLVTCSHVEEAVELMEV 151
Query: 181 LEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSA 240
L F++ ++EL + I++ CV + LA+RYAC++P A ILFCN + EFGK+RDLVSA
Sbjct: 152 LARFQISIRELVQPSDIIKRCVLSRNPILAVRYACLLPHAHILFCNIISEFGKRRDLVSA 211
Query: 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300
L+AY+ASKKHL++PNMYI R ID CG+C DYMKSR IYEDL +Q +T NIYVFNSLMNV
Sbjct: 212 LKAYEASKKHLNTPNMYIYRATIDTCGLCRDYMKSRYIYEDLLNQKITPNIYVFNSLMNV 271
Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
N+HDL +TL +Y+NMQ LG+ DM SYNILLKACC+AG LAQ+IY E+KHLE+ G LK
Sbjct: 272 NSHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRELKHLESVGQLK 331
Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
LDVFTYSTI+KVFAD K WQMALK+K+DMLSAGV+ N + WSSLINACA+AGLVEQA+ L
Sbjct: 332 LDVFTYSTIIKVFADVKLWQMALKIKQDMLSAGVSLNIVAWSSLINACAHAGLVEQAIQL 391
Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
FEEML AGCEPN+QC NI+L ACVEA Q+DRAFR F SW K + GE Y+ S
Sbjct: 392 FEEMLLAGCEPNTQCFNIILNACVEAYQYDRAFRFFHSWKGKKMLGSSGEGYN------S 445
Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMR 540
N+ +T+ PN + NSH +F +RF F PTTTTYNIL+KAC TDYY KAL+ EM
Sbjct: 446 NIGQGHMHDVTSIPNGISNSHILNFAERFPFTPTTTTYNILLKACGTDYYHAKALIKEME 505
Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK 600
TVGLSPN ISW+ILID CG S NVEGA++ILK M + G+ PDV+AYTTAIKVCV SK
Sbjct: 506 TVGLSPNQISWSILIDICGASSNVEGAIEILKTMGDAGIKPDVIAYTTAIKVCVESKNFM 565
Query: 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLK 660
QA +L+EEMK YQI+PN VTY TLL+ARS+YG LHEVQQCLA+YQDM KAGYK ND YL+
Sbjct: 566 QALTLYEEMKCYQIRPNWVTYNTLLKARSKYGFLHEVQQCLAIYQDMRKAGYKPNDYYLE 625
Query: 661 ELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENLAIDLRGLT 720
ELIEEWCEGVIQ+ + QGE + ++ S+RPQSLLLEK+A HL K A+ LAID++GLT
Sbjct: 626 ELIEEWCEGVIQNNREKQGEFSSSNKSESERPQSLLLEKIAAHLLKRVADILAIDVQGLT 685
Query: 721 KVEARIIVLAVLRMMKENYSLG 742
KVEAR++VLAVLRM+KENY LG
Sbjct: 686 KVEARLVVLAVLRMIKENYGLG 707
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510555|ref|XP_003625566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355500581|gb|AES81784.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/677 (57%), Positives = 497/677 (73%), Gaps = 22/677 (3%)
Query: 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR 125
+LS RN+ + + + L L+EF ++ + S+ +V E++A+ ++ I+
Sbjct: 40 NLSPRNNSTSLLQTPLI----LKEFETVLHGELDSDVDV---------ELLANAVLIGIQ 86
Query: 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185
+ + V+ L K+ G++ + L + NEC ++ G +E V LMEVL F+
Sbjct: 87 DRNVRTVIDSLNKVE--GLSEISLSTHLDASAIANECCHMVTCGHIEEAVELMEVLSRFQ 144
Query: 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245
L + +L + I++ C+ LA+RYA ++P+A +LFC+ + EF K+RDLVSAL+AYD
Sbjct: 145 LSIAKLVQPSDIIKRCILSRKPTLAVRYASLLPQAPVLFCSIISEFSKRRDLVSALKAYD 204
Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305
A KK+L PNMYI R IID CG+CGD+MKSR IYEDL +Q +T NIYVFNSLMNVNAHDL
Sbjct: 205 ALKKNLKGPNMYIYRAIIDACGLCGDFMKSRYIYEDLLNQKITPNIYVFNSLMNVNAHDL 264
Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
++L +Y+NMQKLG+ DMASYNILLKACC+AG +AQ++Y ++KHLE+ G LKLDVFT
Sbjct: 265 SYSLNLYQNMQKLGLKPDMASYNILLKACCVAGRVDVAQDMYRDLKHLESVGQLKLDVFT 324
Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
YSTI+KVFADAK WQMALK+K DMLSAGV+ NTI WSSLINACA+AGLVEQA+ LFEEML
Sbjct: 325 YSTIIKVFADAKLWQMALKIKRDMLSAGVSLNTIAWSSLINACAHAGLVEQAIQLFEEML 384
Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
AGCEPN+QC NI+L ACVE CQ+DRAFRLF SW SK V L E + SN E
Sbjct: 385 LAGCEPNTQCFNIILHACVEGCQYDRAFRLFHSWKGSKMLVPLDESCN------SNSEQG 438
Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLS 545
++T P + +SH SF +RF F PTTTTYNIL+KAC T+YY KAL+NEMRTVGLS
Sbjct: 439 GMHNVTTVPTGISSSHILSFTERFPFTPTTTTYNILLKACGTNYYHAKALINEMRTVGLS 498
Query: 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605
PN ISW+ILI+ CG S NV+G ++IL+ M + G+ PDV++YTTAIKVCV SK QA +L
Sbjct: 499 PNQISWSILINICGASENVDGVIEILRTMVDAGIKPDVISYTTAIKVCVESKNFTQALTL 558
Query: 606 FEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEE 665
+ EMK Y PNLVTY TLLRARS+YGSL EVQQ LA+YQDM KAGYK+ND YL+ELIEE
Sbjct: 559 YREMKSYGTHPNLVTYNTLLRARSKYGSLREVQQGLAIYQDMRKAGYKSNDYYLEELIEE 618
Query: 666 WCEGVIQDKNQNQG-EVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENLAIDLRGLTKVEA 724
WCEGVIQD + +G E + +++ +RPQSLLLEK+A HL K A+ LAID++GLTKVEA
Sbjct: 619 WCEGVIQDNEEYEGEEFSSSKKSEIERPQSLLLEKIASHLLKRVADILAIDVQGLTKVEA 678
Query: 725 RIIVLAVLRMMKENYSL 741
R+++LAVLRM+KENY++
Sbjct: 679 RLVILAVLRMIKENYAI 695
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7413558|emb|CAB86037.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/757 (49%), Positives = 488/757 (64%), Gaps = 80/757 (10%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNSS-FTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIR + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIR--------------IIHGFG 229
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 230 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 289
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 290 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 349
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 350 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 409
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 410 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 469
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 470 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 526
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 527 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 586
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
IK EM+ YQI+PN DM
Sbjct: 587 IK----------------EMRRYQIKPNW---------------------------DMRN 603
Query: 650 AGYKAN----DTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQ 705
AGY+ T++ L + VIQ+ Q+Q +++ N+ RP SLL+EKVA H+Q
Sbjct: 604 AGYEQFLLLWSTFI-SLPDGSATRVIQENGQSQDKISDQEGDNAGRPVSLLIEKVATHMQ 662
Query: 706 KSAAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLG 742
+ A NLAIDL+GLTK+EAR++VLAVLRM+KE+Y G
Sbjct: 663 ERTAGNLAIDLQGLTKIEARLVVLAVLRMIKEDYMRG 699
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 750 | ||||||
| TAIR|locus:2151236 | 852 | AT5G02830 [Arabidopsis thalian | 0.890 | 0.784 | 0.595 | 2.8e-215 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.437 | 0.598 | 0.272 | 1.4e-26 | |
| TAIR|locus:2157607 | 709 | AT5G42310 [Arabidopsis thalian | 0.536 | 0.566 | 0.255 | 7.5e-24 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.404 | 0.506 | 0.245 | 2e-18 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.608 | 0.556 | 0.215 | 1.7e-23 | |
| TAIR|locus:2175443 | 952 | AT5G04810 [Arabidopsis thalian | 0.561 | 0.442 | 0.230 | 2.2e-23 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.477 | 0.569 | 0.244 | 6.9e-23 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.485 | 0.690 | 0.239 | 1.1e-22 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.486 | 0.632 | 0.244 | 2.5e-22 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.550 | 0.371 | 0.229 | 2.8e-22 |
| TAIR|locus:2151236 AT5G02830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2080 (737.3 bits), Expect = 2.8e-215, P = 2.8e-215
Identities = 402/675 (59%), Positives = 510/675 (75%)
Query: 72 DYYADMASKLAKDGRLEEFAMIXXXXXXXXG-NVSKFASMLSLEMVASGIVKSIREGRID 130
+YYAD ASKLA+DGR+E+ A+I G NV++FASM+ ++++ GI ++R+G+I+
Sbjct: 82 EYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVDYDLLSKGISSNLRQGKIE 141
Query: 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE 190
VV LK++ ++G+APL+L D S KL++ + + + +S +VE + LME+L +KE
Sbjct: 142 SVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVEKAIDLMEILAGLGFKIKE 201
Query: 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250
L + F +V+ CV + LAIRYAC++P ++L C + FGKK D+VS + AY+A K+
Sbjct: 202 LVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFGKKGDMVSVMTAYEACKQI 261
Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310
L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIYV NSLMNVN+HDL +TL+
Sbjct: 262 LDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIYVINSLMNVNSHDLGYTLK 321
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K +E+ G+LKLD FTY TI+
Sbjct: 322 VYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLDAFTYCTII 381
Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAGLVEQA HLFEEML +GCE
Sbjct: 382 KVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCE 441
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRISNMEHKDK 487
PNSQC NILL ACVEACQ+DRAFRLF+SW S +L D G T + +++
Sbjct: 442 PNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPNILKNNGP 501
Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPN 547
S+ N + NS Y KRF FKPTT TYNIL+KAC TDYYR K LM+EM+++GLSPN
Sbjct: 502 GSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDEMKSLGLSPN 558
Query: 548 HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607
I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTAIK+C +K LK AFSLFE
Sbjct: 559 QITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSLFE 618
Query: 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWC 667
EM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM AGYK ND +LKELIEEWC
Sbjct: 619 EMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELIEEWC 678
Query: 668 EGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENLAIDLRGLTKVEARII 727
EGVIQ+ Q+Q +++ N+ RP SLL+EKVA H+Q+ A NLAIDL+GLTK+EAR++
Sbjct: 679 EGVIQENGQSQDKISDQEGDNAGRPVSLLIEKVATHMQERTAGNLAIDLQGLTKIEARLV 738
Query: 728 VLAVLRMMKENYSLG 742
VLAVLRM+KE+Y G
Sbjct: 739 VLAVLRMIKEDYMRG 753
|
|
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 1.4e-26, P = 1.4e-26
Identities = 95/349 (27%), Positives = 171/349 (48%)
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
M ++G D+ +YN ++ + C T + + K +E KG+ + +V TY+ +V
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLC---KTKRVNDAFDFFKEIERKGI-RPNVVTYTALVNGLC 236
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
++ W A ++ DM+ +TPN IT+S+L++A G V +A LFEEM++ +P+
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296
Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
+ L+ C DR + + L ++ L + NT + N K K+
Sbjct: 297 TYSSLINGL---CLHDRIDEANQMFDLMVSKGCLADVVSYNT--LINGFCKAKRVEDGMK 351
Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWT 552
F +R T TYN L++ D + + ++M G+SP+ ++
Sbjct: 352 LF------REMSQR-GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404
Query: 553 ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612
IL+ +G +E AL I + M++ M D+V YTT I+ ++ ++++A+SLF +
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 464
Query: 613 QIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKE 661
++P++VTY T++ G LHEV+ A+Y M + G ND L +
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVE---ALYTKMKQEGLMKNDCTLSD 510
|
|
| TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 306 (112.8 bits), Expect = 7.5e-24, P = 7.5e-24
Identities = 115/450 (25%), Positives = 197/450 (43%)
Query: 221 DILFCN-FVREFGKKRDLVSALRAYD-ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
D+ N + F K D AL+ A LS+ + +II G +++ A+
Sbjct: 268 DVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLV-SIISALADSGRTLEAEAL 326
Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
+E+LR + +N+L+ V LK + M+K GV D +Y++L+ A
Sbjct: 327 FEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVN 386
Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
AG A+ + +K +EA G ++ + F +S ++ F D WQ +V ++M S GV P
Sbjct: 387 AGRWESARIV---LKEMEA-GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKP 442
Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
+ ++ +I+ ++ AM F+ ML G EP+ N L+ C C+ R
Sbjct: 443 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLID-C--HCKHGR----- 494
Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH--YSSFD--KRF--S 510
+ E ++ ME + T N + NS+ +D KR
Sbjct: 495 --------HIVAEEMFEA-------MERRGCLPCATTYNIMINSYGDQERWDDMKRLLGK 539
Query: 511 FKPTTTTYNILMKACCTDYYRVKALMN-------EMRTVGLSPNHISWTILIDACGGSGN 563
K N++ D Y N EM++VGL P+ + LI+A G
Sbjct: 540 MKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGL 599
Query: 564 VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYIT 623
E A+ ++M DG+ P ++A + I +R +AF++ + MK ++P++VTY T
Sbjct: 600 SEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTT 659
Query: 624 LLRARSRYGSLHEVQQCLAVYQDMWKAGYK 653
L++A R +V VY++M +G K
Sbjct: 660 LMKALIRVDKFQKVP---VVYEEMIMSGCK 686
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 80/326 (24%), Positives = 149/326 (45%)
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
++ + ++ G + D+ +YN+++ C AG EI + L+ V DV TY+TI
Sbjct: 158 KILEILEGSGAVPDVITYNVMISGYCKAG------EINNALSVLDRMSVSP-DVVTYNTI 210
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAG 428
++ D+ + A++V + ML P+ IT++ LI A C ++G V AM L +EM G
Sbjct: 211 LRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG-VGHAMKLLDEMRDRG 269
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
C P+ N+L+ + + D A + S Q + T I +
Sbjct: 270 CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNV------ITHNII------LR 317
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
S+ +T ++ + R F P+ T+NIL+ C +A+ + +M G P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377
Query: 547 NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLF 606
N +S+ L+ ++ A++ L+ M G PD+V Y T + + +++ A +
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 607 EEMKHYQIQPNLVTYITLLRARSRYG 632
++ P L+TY T++ ++ G
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAG 463
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 310 (114.2 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 105/488 (21%), Positives = 228/488 (46%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
+ + + + + + L A+ + + + P+++ T++ G + +I+E+
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEE 409
Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGN 339
+R+ NI FN+ + + + KFT ++++ + G+ D+ ++N LL + G
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLL---AVFGQ 466
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
+ E+ G K ++ G + + T++T++ ++ ++ A+ V ML AGVTP+
Sbjct: 467 NGMDSEVSGVFKEMKRAGFVP-ERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLS 525
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
T+++++ A A G+ EQ+ + EM C+PN LL A + L S
Sbjct: 526 TYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANG----KEIGLMHS- 580
Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH--YSSFDKRFSFKPTTTT 517
L++ E Y G + + + K + + + +P + +S +R F P TT
Sbjct: 581 -LAE------EVYSGVIEPRAVLL-KTLVLVCSKCDLLPEAERAFSELKER-GFSPDITT 631
Query: 518 YNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575
N ++ KA +++ M+ G +P+ ++ L+ S + + +IL+ +
Sbjct: 632 LNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREIL 691
Query: 576 EDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLH 635
G+ PD+++Y T I R+ R++ A +F EM++ I P+++TY T + + Y +
Sbjct: 692 AKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGS---YAADS 748
Query: 636 EVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQS- 694
++ + V + M K G + N +++ +C+ + K++ + V R + P+
Sbjct: 749 MFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK--LNRKDEAKLFVEDLRNLDPHAPKGE 806
Query: 695 --LLLEKV 700
LLE++
Sbjct: 807 DLRLLERI 814
|
|
| TAIR|locus:2175443 AT5G04810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 2.2e-23, P = 2.2e-23
Identities = 103/446 (23%), Positives = 201/446 (45%)
Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD 304
+ ++ + +P + I T++D + D K +++ L+ T + + L+N+
Sbjct: 439 EMEEEGIDAP-IAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKV 497
Query: 305 LKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
K + LEV + M++ GV ++ +Y++++ + A ++ ++ K +K D
Sbjct: 498 GKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM----VKEGMKPD 553
Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
V Y+ I+ F A++ ++M P T T+ +I+ A +G + +++ +F+
Sbjct: 554 VILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFD 613
Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
M + GC P N L+ VE Q ++A + TL+ V+ E +I
Sbjct: 614 MMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAG--VSANEH---TYTKIM-- 666
Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMR 540
+ S+ +T +++ TY L+KACC AL EM
Sbjct: 667 --QGYASVGDTGKAF--EYFTRLQNE-GLDVDIFTYEALLKACCKSGRMQSALAVTKEMS 721
Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK 600
+ N + ILID G+V A +++ M+++G+ PD+ YT+ I C ++ +
Sbjct: 722 ARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMN 781
Query: 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLK 660
+A EEM+ ++PN+ TY TL++ +R SL E + L+ Y++M G K +
Sbjct: 782 RATQTIEEMEALGVKPNIKTYTTLIKGWAR-ASLPE--KALSCYEEMKAMGIKPDKAVYH 838
Query: 661 ELIEEWCEGV-IQDKNQNQGEVTLCR 685
L+ I + G +T+C+
Sbjct: 839 CLLTSLLSRASIAEAYIYSGVMTICK 864
|
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| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 6.9e-23, P = 6.9e-23
Identities = 95/388 (24%), Positives = 183/388 (47%)
Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
P+++ T+++ G+C GD + ++ + + + ++ ++ ++++ N ++ L
Sbjct: 218 PDLFTYGTVVN--GLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDAL 275
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
++ M G+ ++ +YN L++ C G A + ++ +E K + +V T+S +
Sbjct: 276 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM--IERK--INPNVVTFSAL 331
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+ F A K+ ++M+ + P+ T+SSLIN +++A H+FE M+ C
Sbjct: 332 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 391
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
PN N L++ +A + + LFR +S+ + GNT + + Q
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFRE--MSQRGLV------GNTVTYNTLI----QG 439
Query: 490 ITNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCTDYYRV-KALM--NEMRTVGL 544
+ + + F K S P TY+IL+ C Y ++ KAL+ ++ +
Sbjct: 440 LFQAGDC--DMAQKIFKKMVSDGVPPDIITYSILLDGLCK-YGKLEKALVVFEYLQKSKM 496
Query: 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFS 604
P+ ++ I+I+ +G VE + + G+ P+V+ YTT I R ++A +
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 605 LFEEMKHYQIQPNLVTYITLLRARSRYG 632
LF EMK PN TY TL+RAR R G
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRDG 584
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|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 94/393 (23%), Positives = 184/393 (46%)
Query: 254 PNMYICRTIIDVCGIC-GDYMK-SRAIYEDLRSQNVTLNIYVFNSLMNV---NAHDLKFT 308
P++ ++I+ G C G+ M+ + ++ + + ++ ++ ++++ N H + +
Sbjct: 140 PDIVTFTSLIN--GFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGH-VNYA 196
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
L ++ M+ G+ D+ Y L+ C +G A + + K +K DV T++
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGM----TKRKIKPDVITFNA 252
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
++ F + A ++ +M+ + PN T++SLIN G V++A +F M G
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
C P+ L+ + + D A ++F + +S+ + GNT + + Q
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIF--YEMSQKGLT------GNTITYTTLIQGFGQ 364
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEM--RTV-G 543
PN V +S R P TYN+L+ C + KALM +M R + G
Sbjct: 365 --VGKPN-VAQEVFSHMVSR-GVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDG 420
Query: 544 LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603
++PN ++ +L+ +G +E AL + + MR+ M ++ YT I+ ++ ++K A
Sbjct: 421 VAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAV 480
Query: 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636
+LF + ++PN+VTY T++ R G HE
Sbjct: 481 NLFCSLPSKGVKPNVVTYTTMISGLFREGLKHE 513
|
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| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 2.5e-22, P = 2.5e-22
Identities = 98/401 (24%), Positives = 183/401 (45%)
Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVM 321
D G+ G +KSR + +I+ FN L++ A KF L + + MQ+LG+
Sbjct: 68 DAIGLFGGMVKSRPLP----------SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGIS 117
Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
++ +YNIL+ C LA + G++ L G + + T S+++ + K
Sbjct: 118 HNLYTYNILINCFCRRSQISLALALLGKMMKL---GY-EPSIVTLSSLLNGYCHGKRISD 173
Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
A+ + + M+ G P+TIT+++LI+ +A+ L + M+Q GC+PN +++
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 233
Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
+ D AF L +K + + Y D + H+D + N
Sbjct: 234 GLCKRGDIDLAFNLLNKMEAAKIEANV-VIYSTVIDSLCKYRHED-----DALNL----- 282
Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLSPNHISWTILIDAC 558
++ + + +P TY+ L+ C +Y R L+++M ++PN +++ LIDA
Sbjct: 283 FTEMENK-GVRPNVITYSSLISCLC-NYERWSDASRLLSDMIERKINPNVVTFNALIDAF 340
Query: 559 GGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618
G + A ++ M + + PD+ Y++ I RL +A +FE M PN+
Sbjct: 341 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV 400
Query: 619 VTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAND-TY 658
VTY TL+ + + + + ++++M + G N TY
Sbjct: 401 VTYNTLING---FCKAKRIDEGVELFREMSQRGLVGNTVTY 438
|
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| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 2.8e-22, P = 2.8e-22
Identities = 102/444 (22%), Positives = 193/444 (43%)
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
K R A+ Y P++ +++ G D + +++ + + N+Y
Sbjct: 200 KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVY 259
Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
F + V A + E+ K M G D+ +Y +L+ A C A A+E++ ++
Sbjct: 260 TFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKM 319
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
K G K D TY T++ F+D + + +M G P+ +T++ L++A
Sbjct: 320 K----TGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCK 375
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-TLSKTQVALG 469
AG +A + M G PN N L+ + + D A LF + +L A
Sbjct: 376 AGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYT 435
Query: 470 E----DYDGNT-DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
DY G + D +S +E +K T PN + + Y+ L KA
Sbjct: 436 YIVFIDYYGKSGDSVSALETFEKMK---TKGIAPNIVACN----------ASLYS-LAKA 481
Query: 525 CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584
D K + ++ +GL P+ +++ +++ G ++ A+++L M E+G PDV+
Sbjct: 482 G-RDR-EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVI 539
Query: 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644
+ I ++ R+ +A+ +F MK +++P +VTY TLL + G ++Q+ + ++
Sbjct: 540 VVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNG---KIQEAIELF 596
Query: 645 QDMWKAGYKANDTYLKELIEEWCE 668
+ M + G N L + C+
Sbjct: 597 EGMVQKGCPPNTITFNTLFDCLCK 620
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GYL7 | PP361_ARATH | No assigned EC number | 0.5644 | 0.98 | 0.8626 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00023063001 | SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (818 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 750 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-27 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-25 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 1e-27
Identities = 88/362 (24%), Positives = 156/362 (43%), Gaps = 63/362 (17%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTL 309
N++ +ID C G K+ Y +RS+NV + VFN+L++ A D F
Sbjct: 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF-- 562
Query: 310 EVYKNM--QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
+V M + + D + L+KAC AG A+E+Y + KG ++ Y+
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV----YT 618
Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
V + W AL + +DM GV P+ + +S+L++ +AG +++A + ++ +
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
G + + + L+ AC A + +A L+ K
Sbjct: 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK------------------------ 714
Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLS 545
+PT +T N L+ A C KAL ++EM+ +GL
Sbjct: 715 -----------------------LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751
Query: 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605
PN I+++IL+ A + + L +L +EDG+ P++V +C+R R ++A +L
Sbjct: 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACAL 809
Query: 606 FE 607
E
Sbjct: 810 GE 811
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 9e-25
Identities = 81/350 (23%), Positives = 146/350 (41%), Gaps = 58/350 (16%)
Query: 324 MASYNILLKACCLAGNTVLAQEIYG--EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
++++N+L+ C + Q+I G V L + LK D Y+T++ A +
Sbjct: 437 LSTFNMLMSVCASS------QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490
Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
+V +M++AGV N T+ +LI+ CA AG V +A + M +P+ N L+
Sbjct: 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
AC ++ DRAF D ++ M+ + P
Sbjct: 551 ACGQSGAVDRAF-----------------------DVLAEMKAE------THP------- 574
Query: 502 YSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
P T LMKAC R K + + + +TI +++C
Sbjct: 575 ---------IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625
Query: 560 GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619
G+ + AL I M++ G+ PD V ++ + V + L +AF + ++ + I+ V
Sbjct: 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685
Query: 620 TYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEG 669
+Y +L+ A S + ++ L +Y+D+ + + + LI CEG
Sbjct: 686 SYSSLMGACS---NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 2e-15
Identities = 103/430 (23%), Positives = 169/430 (39%), Gaps = 83/430 (19%)
Query: 269 CGDYMKSRAIYE-----DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD 323
CGD + +R +++ D S N ++ Y N LE++ M++L V D
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG-------LELFFTMRELSVDPD 287
Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
+ + ++ AC L G+ L +E++G V K +DV +++++++ W A
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYV----VKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
KV M T + ++W+++I+ GL ++A+ + M Q P+ +L AC
Sbjct: 344 KVFSRM----ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 444 VEACQFDRAFRLF----RSWTLSKTQVA--LGEDY------DGNTDRISNMEHKDKQSIT 491
D +L R +S VA L E Y D + N+ KD S T
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459
Query: 492 NTPN-FVPNSHYSSFDKRFSF-------KPTTTTYNILMKACCTDYYRVKALM------- 536
+ N F+ F KP + T + AC R+ ALM
Sbjct: 460 SIIAGLRLN--NRCFEALIFFRQMLLTLKPNSVTLIAALSACA----RIGALMCGKEIHA 513
Query: 537 NEMRT-VGLS---PNHI-------------------------SWTILIDACGGSGNVEGA 567
+ +RT +G PN + SW IL+ G A
Sbjct: 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMA 573
Query: 568 LQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLR 626
+++ M E G++PD V + + + C RS + Q F M+ Y I PNL Y ++
Sbjct: 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633
Query: 627 ARSRYGSLHE 636
R G L E
Sbjct: 634 LLGRAGKLTE 643
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Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 1e-12
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
P+ +T+++LI+ G VE+A+ LF EM + G +PN +IL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 2e-12
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 581 PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRA 627
PDVV Y T I + ++++A LF EMK I+PN+ TY L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-11
Identities = 54/223 (24%), Positives = 83/223 (37%), Gaps = 71/223 (31%)
Query: 513 PTTTTYNILMKACCTDY-----YRVKALM------------------------------- 536
PT +T+N+LM C + RV L+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 537 -NEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595
+EM G+ N ++ LID C +G V A IMR + PD V + I C +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 596 SKRLKQAFSLFEEMKH--YQIQPNLVTYITLL----------RARSRYGSLHE------- 636
S + +AF + EMK + I P+ +T L+ RA+ Y +HE
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 637 ------VQQC---------LAVYQDMWKAGYKANDTYLKELIE 664
V C L++Y DM K G K ++ + L++
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-10
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Query: 523 KAC-----CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577
KAC + +R L+ P ++ +L+ C S +++GAL++L++++E
Sbjct: 414 KACKKQRAVKEAFRFAKLIRN-------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466
Query: 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSL 634
G+ D YTT I C +S ++ F +F EM + ++ N+ T+ L+ +R G +
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 1e-09
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
DV TY+T++ + + ALK+ +M G+ PN T+S LI+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 9e-09
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595
P+ +++ LID G VE AL++ M++ G+ P+V Y+ I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 48/213 (22%), Positives = 99/213 (46%), Gaps = 24/213 (11%)
Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDL-KFTLEVY 312
+ ++ +ID+ CGD +R +++ + + +NS++ A H + L +Y
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLY 313
Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY-GEVKHLEAKGVLKLDVFTYSTIVK 371
M+ GV D +++I+++ A++ + G ++ LD+ + +V
Sbjct: 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----GFPLDIVANTALVD 368
Query: 372 VFADAKWWQM--ALKVKEDMLSAGVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQA 427
+++ KW +M A V + M P N I+W++LI N G +A+ +FE M+
Sbjct: 369 LYS--KWGRMEDARNVFDRM------PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
G PN +L AC + ++ + +F+S +
Sbjct: 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 73/328 (22%), Positives = 138/328 (42%), Gaps = 44/328 (13%)
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
LE Y M++ V D + +L AC G+ + +++ + E KG++ V +
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH---ELAERKGLISYVVVANAL 430
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQA 427
I ++++ K AL+V ++ + I+W+S+I N E A+ F +ML
Sbjct: 431 I-EMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFE-ALIFFRQML-L 483
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG-EDYDGNTDRISNMEHKD 486
+PNS + L A + AC A + + +G + + N + ++ +
Sbjct: 484 TLKPNS----VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA--LLDLYVRC 537
Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR------VKALMNEMR 540
+ F NSH + ++NIL+ T Y L N M
Sbjct: 538 GRMNYAWNQF--NSH----------EKDVVSWNILL----TGYVAHGKGSMAVELFNRMV 581
Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED-GMSPDVVAYTTAIKVCVRSKRL 599
G++P+ +++ L+ AC SG V L+ M E ++P++ Y + + R+ +L
Sbjct: 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641
Query: 600 KQAFSLFEEMKHYQIQPNLVTYITLLRA 627
+A++ +M I P+ + LL A
Sbjct: 642 TEAYNFINKMP---ITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 4e-07
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
P TYN L+ C L NEM+ G+ PN +++ILID
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 68/372 (18%), Positives = 154/372 (41%), Gaps = 36/372 (9%)
Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMAS 326
CG + +R +++++ +N + + +++ V+A + + +++ M + G A+ +
Sbjct: 171 CGMLIDARRLFDEMPERN----LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226
Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
+ ++L+A G+ Q+++ V G D F ++ +++ + A V
Sbjct: 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVG----DTFVSCALIDMYSKCGDIEDARCVF 282
Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
+ M T+ W+S++ A G E+A+ L+ EM +G + +I+++
Sbjct: 283 DGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338
Query: 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
+ A + + D NT + + K V FD
Sbjct: 339 ALLEHA----KQAHAGLIRTGFPLDIVANTALV---DLYSKWGRMEDARNV-------FD 384
Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
+ + ++N L+ KA + M G++PNH+++ ++ AC SG
Sbjct: 385 RMP--RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442
Query: 565 EGALQILKIMRED-GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYIT 623
E +I + M E+ + P + Y I++ R L +A+++ ++ +P + +
Sbjct: 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM---IRRAPFKPTVNMWAA 499
Query: 624 LLRARSRYGSLH 635
LL A + +L
Sbjct: 500 LLTACRIHKNLE 511
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 6e-07
Identities = 10/48 (20%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
++ +N+L++ ++ L+++ M+K G+ ++ +Y+IL+ C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 8e-07
Identities = 100/494 (20%), Positives = 195/494 (39%), Gaps = 73/494 (14%)
Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---- 220
L G++E + L+E ++E R+PV E D + +LC K V R +
Sbjct: 61 LCSHGQLEQALKLLESMQELRVPVDE-DAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 221 -----DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
+ + FVR FG +LV A + + +++ ++ G + ++
Sbjct: 120 GVRLGNAMLSMFVR-FG---ELVHAWYVF----GKMPERDLFSWNVLVGGYAKAGYFDEA 171
Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
+Y + V ++Y F ++ DL EV+ ++ + G D+ N L+
Sbjct: 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231
Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
G+ V A+ ++ + + D +++ ++ + + L++ M
Sbjct: 232 YVKCGDVVSARLVF--------DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
V P+ +T +S+I+AC G + +++ G + CN L+Q + + A
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT-----PNFVPNSH---YSSF 505
++F S ME KD S T N +P+ Y+
Sbjct: 344 KVF-----------------------SRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 506 DKRFSFKPTTTTYNILMKAC-CTDYYRVKALMNEMRTVGLSPNHISWTI----LIDACGG 560
++ + P T ++ AC C V ++E+ IS+ + LI+
Sbjct: 381 EQD-NVSPDEITIASVLSACACLGDLDVGVKLHEL---AERKGLISYVVVANALIEMYSK 436
Query: 561 SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVT 620
++ AL++ + E DV+++T+ I + R +A F +M ++PN VT
Sbjct: 437 CKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVT 491
Query: 621 YITLLRARSRYGSL 634
I L A +R G+L
Sbjct: 492 LIAALSACARIGAL 505
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 8e-07
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
+T+++LI+ AG VE+A+ LF+EM + G EP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 8e-07
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
G+ P+ +T+++LI+ AG V++A+ L +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 8e-06
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+T++SLI+ AG +E+A+ LF+EM + G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-05
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
T+++L+ A A AG + A+ + EEM +G +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583
+++ LID +G VE AL++ K M+E G+ PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 75/357 (21%), Positives = 124/357 (34%), Gaps = 79/357 (22%)
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
LEA L TY +V+ K + V + S+G P+ + ++ G
Sbjct: 113 LEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS-W------------ 459
++ A LF+EM E N ++ V+A + AF LFR W
Sbjct: 173 MLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228
Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH--------YSSF----DK 507
+ + LG G + V ++ YS D
Sbjct: 229 VMLRASAGLGSARAG----------QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278
Query: 508 RFSF----KPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGS 561
R F + TT +N ++ Y +AL EMR G+S + +++I+I
Sbjct: 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338
Query: 562 GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK--------------------- 600
+E A Q + G D+VA T + + + R++
Sbjct: 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398
Query: 601 ----------QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDM 647
+A +FE M + PN VT++ +L A RY L +Q ++Q M
Sbjct: 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-CRYSGL--SEQGWEIFQSM 452
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 577 DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610
G+ PDVV Y T I R+ R+ +A L +EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 583 VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616
+ Y + ++ A ++ EEMK ++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN 617
V Y T I ++ R+++A LF+EMK I+P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 549 ISWTILIDACGGSGNVEGALQILKIMREDGM 579
+++ LI +G +E AL++ K M+E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 550 SWTILIDACGGSGNVEGALQILKIMREDGMSP 581
++ L+ A +G+ + AL +L+ M+ G+ P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.002
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 47/96 (48%)
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
P+ N L+ + + + A +LF + M
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLF-----------------------NEM-------- 29
Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
K+ KP TY+IL+ C
Sbjct: 30 ----------------KKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
TY+T++ A + AL++ ++M G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 750 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.53 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.52 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.48 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.47 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.46 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.42 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.42 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.41 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.41 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.39 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.39 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.39 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.38 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.38 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.38 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.37 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.36 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.33 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.31 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.31 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.29 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.29 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.24 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.22 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.16 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.15 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.15 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.15 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.15 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.14 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.12 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.11 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.07 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.06 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.06 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.05 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.04 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.99 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.94 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.91 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.9 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.87 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.86 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.85 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.85 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.85 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.84 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.82 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.8 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.8 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.79 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.77 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.73 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.71 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.7 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.69 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.65 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.63 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.62 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.61 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.6 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.59 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.58 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.49 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.48 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.47 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.46 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.44 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.43 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.38 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.38 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.36 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.35 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.31 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.31 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.26 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.25 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.24 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.23 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.23 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.23 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.21 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.14 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.14 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.12 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.11 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.11 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.1 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.08 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.08 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.0 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.98 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.97 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.93 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.88 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.78 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.78 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.77 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.74 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.73 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.72 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.68 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.64 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.6 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.59 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.57 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.55 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.55 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.55 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.53 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.51 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.49 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.39 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.3 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.27 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.24 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.17 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.11 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.08 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.07 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.07 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.06 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.04 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.03 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.02 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.02 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.99 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.98 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.93 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.92 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.92 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.9 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.9 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.89 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.88 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.87 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.83 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.83 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.8 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.8 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.76 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.76 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.73 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.71 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.67 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.64 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.63 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.6 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.57 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.55 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.51 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.47 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.47 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.42 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.38 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.38 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.37 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.35 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.31 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.3 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.22 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.22 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.16 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.14 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.98 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.87 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.87 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.86 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.75 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.74 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.71 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.68 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.68 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.63 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.62 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.6 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.45 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.3 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.22 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.08 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.06 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.05 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.05 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.04 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.03 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.02 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.01 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.94 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.37 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.32 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.28 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.25 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.2 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.88 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.86 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.6 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.58 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.52 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.48 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.23 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.1 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.02 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.0 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.97 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.76 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.62 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.48 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.39 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.12 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.0 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.81 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.77 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.73 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.71 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.5 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.36 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.82 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.76 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.71 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.69 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.57 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.42 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.4 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.36 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.34 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.31 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 89.7 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.66 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.52 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.14 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.04 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 88.76 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.75 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 88.69 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.63 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.38 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.14 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.05 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 87.77 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 87.76 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 87.75 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.61 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.59 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 87.35 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.11 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 87.02 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.0 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.1 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.88 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.84 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.42 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 84.14 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.32 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 82.78 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 82.52 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.39 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 81.33 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 81.14 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.25 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-67 Score=583.99 Aligned_cols=548 Identities=21% Similarity=0.354 Sum_probs=470.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC-hhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
...|..++..+++.|++++|+++|+.|...+.. ++.. ....++..+.+.|..++|..+++.|.. |+..
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v-------~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI-------YHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHH-------HHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 556666667777777777777777777766542 2211 113344555667777777777766653 4443
Q ss_pred ccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004480 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (750)
+|+.++.+|.. .|++++|.++|++|.+.|+.| +..+|+.+|.
T Consensus 439 ----Tyn~LL~a~~k---~g~~e~A~~lf~~M~~~Gl~p-------------------------------D~~tynsLI~ 480 (1060)
T PLN03218 439 ----TFNMLMSVCAS---SQDIDGALRVLRLVQEAGLKA-------------------------------DCKLYTTLIS 480 (1060)
T ss_pred ----HHHHHHHHHHh---CcCHHHHHHHHHHHHHcCCCC-------------------------------CHHHHHHHHH
Confidence 55666665544 677777777777777766544 3478999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc--CChHH
Q 004480 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (750)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~ 307 (750)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+++ |++++
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~de 560 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 79999
Q ss_pred HHHHHHHHHH--cCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHH
Q 004480 308 TLEVYKNMQK--LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (750)
Q Consensus 308 a~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~ 385 (750)
|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.+ .| +.|+..+|+.+|.+|++.|++++|.++
T Consensus 561 A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e---~g-i~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE---YN-IKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---cC-CCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999986 67899999999999999999999999999999987 45 789999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccc
Q 004480 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465 (750)
Q Consensus 386 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 465 (750)
|++|.+.|+.||..+|+.+|++|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|...+
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-- 714 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-- 714 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987554
Q ss_pred cccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHh--cHHHHHHHHHHHHHcC
Q 004480 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVG 543 (750)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~~~ 543 (750)
+.||..+||++|.+|++ +.++|.++|++|...|
T Consensus 715 ---------------------------------------------~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 715 ---------------------------------------------LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred ---------------------------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 58999999999999986 6899999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCHH
Q 004480 544 LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----S-------------------KRLK 600 (750)
Q Consensus 544 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~-------------------g~~~ 600 (750)
+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+ . +..+
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 9999999999999999999999999999999999999999999999976432 1 2346
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhhhhccccc
Q 004480 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGE 680 (750)
Q Consensus 601 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~ 680 (750)
+|..+|++|.+.|+.||..||+.++.++++.+..+. +..++++|...+..|+..+|++||+++++-
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~---~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~----------- 895 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATL---RNRLIENLGISADSQKQSNLSTLVDGFGEY----------- 895 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHH---HHHHHHHhccCCCCcchhhhHHHHHhhccC-----------
Confidence 899999999999999999999999988777777555 566888888889999999999999987531
Q ss_pred chhhhcccCCCchhHHHHHHHHHHhhhh---hhhhhhhhccccchhhHHHHHHHHhhhhcccc
Q 004480 681 VTLCRRTNSQRPQSLLLEKVAVHLQKSA---AENLAIDLRGLTKVEARIIVLAVLRMMKENYS 740 (750)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~ 740 (750)
..++..++.++...++.++. ...|.+|++.|+.+.+...++-|++-++++..
T Consensus 896 --------~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~ 950 (1060)
T PLN03218 896 --------DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLA 950 (1060)
T ss_pred --------hHHHHHHHHHHHHcCCCCCcccccCceEEEcccCcchhHHHHHHHHHHHHHHHHh
Confidence 13577888888888887777 34799999999988777777778888876643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-67 Score=601.34 Aligned_cols=624 Identities=17% Similarity=0.175 Sum_probs=519.2
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhh----------------------------HHHHHHHHH
Q 004480 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS----------------------------LEMVASGIV 121 (750)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~----------------------------~~~~~~~~~ 121 (750)
+...++.++..+++.|++++|+.+|+.|...|..|+..+.... ....+.++.
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 4677888888999999999999999988887765554432111 123366788
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHH
Q 004480 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (750)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (750)
.|++.|+.+.|.++|++|.+ ||.. +++.++.++.. .|++++|+++|++|...|+.|+ ..++..++++|
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~----~d~~----~~n~li~~~~~---~g~~~~A~~~f~~M~~~g~~Pd-~~t~~~ll~~~ 197 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPE----RDLF----SWNVLVGGYAK---AGYFDEALCLYHRMLWAGVRPD-VYTFPCVLRTC 197 (857)
T ss_pred HHHhCCChHHHHHHHhcCCC----CCee----EHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHh
Confidence 88999999999999999874 4444 67777775544 8999999999999999888774 46688899999
Q ss_pred HcCCChHHHHHHhhhC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004480 202 VNKPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (750)
Q Consensus 202 ~~~~~~~~A~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 276 (750)
...+++..+.+++..+ .++..++++|+.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 198 GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred CCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHH
Confidence 9999999998887664 55778999999999999999999999999965 89999999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHhhc--CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 004480 277 AIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (750)
Q Consensus 277 ~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 354 (750)
++|++|.+.|+.||..||++++.+++ ++.+.+.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|.
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 350 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--- 350 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---
Confidence 99999999999999999999999866 7999999999999999999999999999999999999999999999985
Q ss_pred hcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004480 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (750)
Q Consensus 355 ~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 434 (750)
.||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..
T Consensus 351 -----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 351 -----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred -----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCcc
Q 004480 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (750)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 514 (750)
+|++|+++|++.|++++|.++|++|...+.. .++..+..+...... .....++..|. .+++||
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v-----s~~~mi~~~~~~g~~-----------~eA~~lf~~m~-~~~~pd 488 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVI-----SWTSIIAGLRLNNRC-----------FEALIFFRQML-LTLKPN 488 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCee-----eHHHHHHHHHHCCCH-----------HHHHHHHHHHH-hCCCCC
Confidence 9999999999999999999999998764321 111111111000000 00011112232 247999
Q ss_pred HHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004480 515 TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592 (750)
Q Consensus 515 ~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 592 (750)
..||+++|.+|++ +.+.+.+++..|.+.|+.+|..++|+||++|+++|++++|.++|++| .||..+||++|.+
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~ 563 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG 563 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH
Confidence 9999999999986 68999999999999999999999999999999999999999999987 6899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHh-hh
Q 004480 593 CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW-KAGYKANDTYLKELIEEWCE-GV 670 (750)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~-~~ 670 (750)
|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|.+++ |+++|++|. +.|+.|+..+|+.+++.|++ |.
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e---a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ---GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH---HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999776 788999999 68999999999999999999 88
Q ss_pred hhhhhcccccchhhhcccCCCchhHHHHHH------------HH---HHhhhhhhhhhhhhccccchhhHHHHHHHHhhh
Q 004480 671 IQDKNQNQGEVTLCRRTNSQRPQSLLLEKV------------AV---HLQKSAAENLAIDLRGLTKVEARIIVLAVLRMM 735 (750)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~~~~~~~~~~~i~l~~l~~~~~~~~~~~~~~~~ 735 (750)
++++.+..+++.. ......|..++... ++ .+.+.....+.....-++..|....+..+.+.|
T Consensus 641 ~~eA~~~~~~m~~---~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 641 LTEAYNFINKMPI---TPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred HHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 8888877665421 11112233332221 11 223333333333334456778888999999999
Q ss_pred hcccccCccc
Q 004480 736 KENYSLGTDE 745 (750)
Q Consensus 736 ~~~~~~~~~~ 745 (750)
+++...+...
T Consensus 718 ~~~g~~k~~g 727 (857)
T PLN03077 718 RENGLTVDPG 727 (857)
T ss_pred HHcCCCCCCC
Confidence 9997776554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-65 Score=569.68 Aligned_cols=515 Identities=20% Similarity=0.294 Sum_probs=457.4
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCC-CcchHHHHHHHHHhcCCHH
Q 004480 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-ADILFCNFVREFGKKRDLV 238 (750)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 238 (750)
..+..+.+.|++++|+++|++|...++.+.+...+..++..|.+.|.+++|..+|..++. +..+|+.++.+|++.|+++
T Consensus 375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHH
Confidence 333445558999999999999999998777777888899999999999999999998864 4588999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc--CChHHHHHHHHHHH
Q 004480 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQ 316 (750)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~ 316 (750)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+++ |++++|.++|++|.
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999876 79999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCC
Q 004480 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (750)
Q Consensus 317 ~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 396 (750)
+.|+.||..+|+.||.+|++.|++++|.++|++|... ..| +.||..+|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 535 ~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~g-i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THP-IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCC-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999752 123 78999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCch
Q 004480 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476 (750)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 476 (750)
+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++++|++.|++++|.++|+.|.+.+
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G------------- 679 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG------------- 679 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred hhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004480 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTIL 554 (750)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~l 554 (750)
+.||..+|+++|.+|++ +.++|.++|++|.+.|+.||..+||+|
T Consensus 680 ----------------------------------~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~L 725 (1060)
T PLN03218 680 ----------------------------------IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725 (1060)
T ss_pred ----------------------------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 58999999999999986 689999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 004480 555 IDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR---- 630 (750)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---- 630 (750)
|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~k 805 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEK 805 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999976542
Q ss_pred cCCHH----------------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccchhhhcccCCCch
Q 004480 631 YGSLH----------------EVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVTLCRRTNSQRPQ 693 (750)
Q Consensus 631 ~g~~~----------------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (750)
++... -...|+.+|++|.+.|+.||..||+.+|.++++ +....+.
T Consensus 806 a~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~------------------ 867 (1060)
T PLN03218 806 ACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRN------------------ 867 (1060)
T ss_pred HhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHH------------------
Confidence 11110 124589999999999999999999999977654 2221111
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhccccchhhHHHHHHHHhhhhcccccCcc
Q 004480 694 SLLLEKVAVHLQKSAAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGTD 744 (750)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (750)
.+ .+.+......+....+...|+|+++. ...++.+++.|.+.+..|.-
T Consensus 868 ~m-~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 868 RL-IENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HH-HHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 11 12122222333345566777787653 35689999999999887754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=570.46 Aligned_cols=549 Identities=16% Similarity=0.204 Sum_probs=479.4
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
...++.++..|.+.|++++|..+|++|... + ...++.++..|++.|++++|+++|++|.+.|+.||..
T Consensus 121 ~~~~n~li~~~~~~g~~~~A~~~f~~m~~~----d-------~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~- 188 (857)
T PLN03077 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPER----D-------LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY- 188 (857)
T ss_pred chHHHHHHHHHHhCCChHHHHHHHhcCCCC----C-------eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-
Confidence 345566677777777777777777777532 2 2234678888999999999999999999999999887
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCC-CcchHHHHHH
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-ADILFCNFVR 229 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~l~~ 229 (750)
+++.++++|.. .+++..+.+++..+...|+.| +...++.++..|++.|++++|.++|+.++. +..+|+++|.
T Consensus 189 ---t~~~ll~~~~~---~~~~~~~~~~~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~ 261 (857)
T PLN03077 189 ---TFPCVLRTCGG---IPDLARGREVHAHVVRFGFEL-DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261 (857)
T ss_pred ---HHHHHHHHhCC---ccchhhHHHHHHHHHHcCCCc-ccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHH
Confidence 67778887765 788999999999999999876 556789999999999999999999999865 5689999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc--CChHH
Q 004480 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (750)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~ 307 (750)
+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|++++.+++ |++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 79999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHH
Q 004480 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (750)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 387 (750)
|.++|++|. .||..+||.+|.+|++.|++++|.++|++|.+ .| +.||..+|+.++.+|++.|++++|.++++
T Consensus 342 A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~---~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 342 AEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ---DN-VSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred HHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH---hC-CCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 999999996 58999999999999999999999999999986 55 89999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccc
Q 004480 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (750)
Q Consensus 388 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 467 (750)
.|.+.|+.|+..+|+.||++|++.|++++|.++|++|. .+|..+|++++.+|++.|+.++|..+|++|... ..++
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd 488 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPN 488 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCC
Confidence 99999999999999999999999999999999999996 578899999999999999999999999999753 2221
Q ss_pred cCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCC
Q 004480 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLS 545 (750)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~ 545 (750)
. .++......+.. ....-....+...+.+.|+.+|..++|++|.+|++ +.++|.++|+.| .
T Consensus 489 ~-~t~~~lL~a~~~-----------~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~ 551 (857)
T PLN03077 489 S-VTLIAALSACAR-----------IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----E 551 (857)
T ss_pred H-hHHHHHHHHHhh-----------hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----C
Confidence 1 111111110000 00001112334456778899999999999999985 789999999987 5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHH
Q 004480 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-HYQIQPNLVTYITL 624 (750)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~l 624 (750)
||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|. +.|+.|+..+|+++
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999 78999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhh
Q 004480 625 LRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDK 674 (750)
Q Consensus 625 i~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~ 674 (750)
+++|++.|++++ |.+++++| .++||..+|++|+.+|.. +..+.+
T Consensus 632 v~~l~r~G~~~e---A~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 632 VDLLGRAGKLTE---AYNFINKM---PITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHHHHhCCCHHH---HHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHH
Confidence 999999999887 56688888 589999999999999865 444433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-60 Score=526.60 Aligned_cols=454 Identities=17% Similarity=0.231 Sum_probs=401.8
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhcC-CCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHH
Q 004480 117 ASGIVKSIREGRIDCVVGVLKKLNELG-VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (750)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~l~~~~~~~-~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (750)
+.++..+.+.|++++|+++|++|...+ ..||.. +++.++.+|.. .++.+.|.+++..|...|+.|+
T Consensus 91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~----t~~~ll~a~~~---~~~~~~a~~l~~~m~~~g~~~~------ 157 (697)
T PLN03081 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPAS----TYDALVEACIA---LKSIRCVKAVYWHVESSGFEPD------ 157 (697)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHh---CCCHHHHHHHHHHHHHhCCCcc------
Confidence 566777889999999999999998754 566654 67777877666 7899999999999998886653
Q ss_pred HHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004480 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (750)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 275 (750)
..+|+.++.+|++.|++++|.++|++|.+ ||..+||+++.+|++.|++++|
T Consensus 158 -------------------------~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 158 -------------------------QYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred -------------------------hHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHH
Confidence 36788999999999999999999999865 8999999999999999999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHhhc--CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004480 276 RAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353 (750)
Q Consensus 276 ~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 353 (750)
+++|++|.+.|+.||..+|+.++.+++ +..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|+.|.
T Consensus 209 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-- 286 (697)
T PLN03081 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-- 286 (697)
T ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 999999999999999999999999876 5888899999999999999999999999999999999999999999885
Q ss_pred hhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004480 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (750)
Q Consensus 354 ~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 433 (750)
.+|..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||.
T Consensus 287 ------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 287 ------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred ------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCc
Q 004480 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (750)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 513 (750)
.+|++|+++|++.|++++|.++|++|. .|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~---------------------------------------------------~~ 389 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMP---------------------------------------------------RK 389 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCC---------------------------------------------------CC
Confidence 999999999999999999999999875 67
Q ss_pred cHHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHH
Q 004480 514 TTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE-DGMSPDVVAYTTAI 590 (750)
Q Consensus 514 ~~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li 590 (750)
|..+||++|.+|++ +.++|.++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 88999999999986 6789999999999999999999999999999999999999999999976 59999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-
Q 004480 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN-DTYLKELIEEWCE- 668 (750)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~- 668 (750)
++|++.|++++|.+++++| ++.||..+|++|+.+|+..|+++.+++ ++++|. ++.|+ ..+|..|+..|++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~---~~~~l~--~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL---AAEKLY--GMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH---HHHHHh--CCCCCCCcchHHHHHHHHhC
Confidence 9999999999999998876 588999999999999999999887554 555664 44554 5689999999987
Q ss_pred hhhhhhhcccc
Q 004480 669 GVIQDKNQNQG 679 (750)
Q Consensus 669 ~~~~~~~~~~~ 679 (750)
|.++++.+..+
T Consensus 542 G~~~~A~~v~~ 552 (697)
T PLN03081 542 GRQAEAAKVVE 552 (697)
T ss_pred CCHHHHHHHHH
Confidence 77777665433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=507.27 Aligned_cols=468 Identities=16% Similarity=0.226 Sum_probs=426.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhc-CChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
...+..++..+.+.|++++|+.+|+.|...+ ..|+ ..+++.++.++.+.++++.|.+++..|.+.|+.||..
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~-------~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLP-------ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 4578999999999999999999999998764 3455 3345677888899999999999999999999999876
Q ss_pred ccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004480 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (750)
+++.++..+ .+.|++++|.++|++|.. | +..+|++++.
T Consensus 160 ----~~n~Li~~y---~k~g~~~~A~~lf~~m~~----~-------------------------------~~~t~n~li~ 197 (697)
T PLN03081 160 ----MMNRVLLMH---VKCGMLIDARRLFDEMPE----R-------------------------------NLASWGTIIG 197 (697)
T ss_pred ----HHHHHHHHH---hcCCCHHHHHHHHhcCCC----C-------------------------------CeeeHHHHHH
Confidence 556666543 348999999999988753 1 2478999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc--CChHH
Q 004480 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (750)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~ 307 (750)
+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++++.+++ |++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 79999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHH
Q 004480 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (750)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 387 (750)
|.++|++|. .+|..+||.+|.+|++.|++++|.++|++|.+ .| +.||..||+.++.+|++.|++++|.+++.
T Consensus 278 A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~---~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 278 ARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD---SG-VSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred HHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH---cC-CCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999996 47999999999999999999999999999986 55 89999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccc
Q 004480 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (750)
Q Consensus 388 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 467 (750)
.|.+.|+.||..+|++||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|...+
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g---- 421 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG---- 421 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 99999999999999999999999999999999999995 5899999999999999999999999999988654
Q ss_pred cCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHh--cHHHHHHHHHHHHH-cCC
Q 004480 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRT-VGL 544 (750)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~-~~~ 544 (750)
+.||..||+++|.+|++ ..++|.++|+.|.+ .|+
T Consensus 422 -------------------------------------------~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 422 -------------------------------------------VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred -------------------------------------------CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 58999999999999985 68999999999986 699
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 004480 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYIT 623 (750)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 623 (750)
.|+..+|+.++++|++.|++++|.+++++| ++.||..+|++|+.+|+..|+++.|..+++++.+ +.|+ ..+|..
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~ 533 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVV 533 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHH
Confidence 999999999999999999999999998876 5799999999999999999999999999999974 5674 789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHcCCCC
Q 004480 624 LLRARSRYGSLHEVQQCLAVYQDMWKAGYKA 654 (750)
Q Consensus 624 li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p 654 (750)
|+..|++.|++++ |.+++++|.+.|++.
T Consensus 534 L~~~y~~~G~~~~---A~~v~~~m~~~g~~k 561 (697)
T PLN03081 534 LLNLYNSSGRQAE---AAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHhCCCHHH---HHHHHHHHHHcCCcc
Confidence 9999999999887 567999999999853
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-27 Score=280.88 Aligned_cols=554 Identities=13% Similarity=0.065 Sum_probs=321.6
Q ss_pred cccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc
Q 004480 63 VRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (750)
Q Consensus 63 l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (750)
+...|.. ...+..++..+.+.|++++|+..++.+.... |... ..+..++..+.+.|++++|.++|+++.+.
T Consensus 322 ~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 392 (899)
T TIGR02917 322 LKYAPNS-HQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDP------AALSLLGEAYLALGDFEKAAEYLAKATEL 392 (899)
T ss_pred HHhCCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5556666 6666777777788888888888888777663 3221 22234445567778888888888777763
Q ss_pred CCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----C
Q 004480 143 GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----P 218 (750)
Q Consensus 143 ~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~ 218 (750)
.|+.. ..+..+ ...+...|++++|++.++++.... |........++..+.+.|++++|...+..+ |
T Consensus 393 --~~~~~---~~~~~l---~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 462 (899)
T TIGR02917 393 --DPENA---AARTQL---GISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462 (899)
T ss_pred --CCCCH---HHHHHH---HHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 34322 111112 222333677777777777776644 444555566666777777777777766553 4
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 004480 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (750)
Q Consensus 219 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 298 (750)
.+..++..++..|...|++++|...|+++.+... .+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4556677777777777777777777777765332 345566666677777777777777777776553 23444555544
Q ss_pred Hhh--cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhc
Q 004480 299 NVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (750)
Q Consensus 299 ~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~ 376 (750)
..+ .|+.++|...++++.+.+ +.+...+..+...+.+.|++++|..+++.+... .+.+...|..+..+|...
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-----APDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHc
Confidence 443 366777777777776553 345556666777777777777777777776542 234556677777777777
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHH
Q 004480 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (750)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 456 (750)
|++++|...|+++.+.. +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|.+++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777776553 2345566677777777777777777777776543 334666777777777777777777777
Q ss_pred HHHhhcccccccCCC-------CCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH--h
Q 004480 457 RSWTLSKTQVALGED-------YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--T 527 (750)
Q Consensus 457 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~ 527 (750)
+.+............ ..+........ +.......|+..++..+...+. +
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~----------------------~~~~~~~~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQA----------------------YRKALKRAPSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHH----------------------HHHHHhhCCCchHHHHHHHHHHHCC
Confidence 766544311000000 00000000000 0000001233333333444443 2
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004480 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (750)
Q Consensus 528 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (750)
+.++|.+.++.+.+.. +.+...+..+...|...|+.++|..+|+++.+.. +.+...++.+...+...|+ .+|.++++
T Consensus 751 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 4556666666655542 2345555566666666666666666666665542 2345556666666666666 55666666
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhc
Q 004480 608 EMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQ 676 (750)
Q Consensus 608 ~m~~~g~~p-~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~~~ 676 (750)
++.+. .| +..++..+...+...|++++ |+.+|+++.+.+.. +..++..+...+++ |...++.+
T Consensus 828 ~~~~~--~~~~~~~~~~~~~~~~~~g~~~~---A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 828 KALKL--APNIPAILDTLGWLLVEKGEADR---ALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred HHHhh--CCCCcHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHH
Confidence 66543 22 34455555555666666544 45566666655543 55555555555554 44444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-27 Score=275.81 Aligned_cols=433 Identities=13% Similarity=0.085 Sum_probs=255.8
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 243 (750)
.|++++|.++|+++.... |.+...+..++..+...|++++|.+.+... |........++..+.+.|++++|+.+
T Consensus 376 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred CCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 555555555555555432 444445555555555555555555555442 22334444455555566666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCC
Q 004480 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVM 321 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~ 321 (750)
++.+.... +.+..+|..+...+...|++++|...|+++.+... .+...+..+... ..|++++|.+.|+++...+ +
T Consensus 454 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 530 (899)
T TIGR02917 454 AKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-P 530 (899)
T ss_pred HHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence 66555432 23445566666666666666666666666554321 122222222222 2356666666666665543 3
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHH
Q 004480 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (750)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 401 (750)
.+..++..+...+.+.|+.++|...++++... .+.+...+..++..|.+.|++++|..+++.+.... +.+...|
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 604 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAEL-----NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAW 604 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 34555556666666666666666666665442 12344455556666666666666666666665442 3345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhh
Q 004480 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481 (750)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (750)
..+..++.+.|++++|...|+++.+.. +.+...+..+..++.+.|++++|...|+++....
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------ 665 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK------------------ 665 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------
Confidence 666666666666666666666665542 3344555566666666666666666666554321
Q ss_pred hhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004480 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACG 559 (750)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 559 (750)
+.+..++..+...+. ++.++|..+++.+.+.+ +.+...+..+...+.
T Consensus 666 ------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 666 ------------------------------PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred ------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 234555666665554 46777778887777664 345666777777777
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004480 560 GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQ 639 (750)
Q Consensus 560 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~ 639 (750)
+.|++++|...|+++... .|+..++..+...+.+.|++++|.+.++++.+.. ..+...+..+...|...|+.++
T Consensus 715 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~--- 788 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDK--- 788 (899)
T ss_pred HCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH---
Confidence 888888888888877765 3555666777777778888888888887777642 3456777777777777777665
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004480 640 CLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (750)
Q Consensus 640 a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 668 (750)
|..+|+++.+.. +.+...++.+...+.+
T Consensus 789 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 789 AIKHYRTVVKKA-PDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 566777777654 2456666666666655
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-19 Score=213.28 Aligned_cols=541 Identities=12% Similarity=0.014 Sum_probs=363.3
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHH----------HHHHHHHhhhhcCc
Q 004480 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLE----------MVASGIVKSIREGR 128 (750)
Q Consensus 59 ~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~----------~~~~~~~~~~~~g~ 128 (750)
+.+.+..+|++ +..+..++..+...|+.++|...++++.+.. |.......... ........+...|+
T Consensus 51 l~kl~~~~p~~-p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~ 127 (1157)
T PRK11447 51 LYRLELIDPNN-PDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGR 127 (1157)
T ss_pred HHHHHccCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 33447788998 8889999999999999999999999999994 44322211110 11233445788999
Q ss_pred hhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChH
Q 004480 129 IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN 208 (750)
Q Consensus 129 ~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (750)
+++|++.|+++.+.+ |.... .... +..... ...|+.++|++.|+++.+.. |.+...+..++..+...|+.+
T Consensus 128 ~~eA~~~~~~~l~~~--p~~~~--la~~-y~~~~~--~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 128 TEEALASYDKLFNGA--PPELD--LAVE-YWRLVA--KLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHHHHHHHHHccCC--CCChH--HHHH-HHHHHh--hCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHH
Confidence 999999999999742 32210 0111 111111 12599999999999999865 888888999999999999999
Q ss_pred HHHHHhhhCCCC--------------------------------------cch---H-----------------HHHHHH
Q 004480 209 LAIRYACIVPRA--------------------------------------DIL---F-----------------CNFVRE 230 (750)
Q Consensus 209 ~A~~~~~~~~~~--------------------------------------~~~---~-----------------~~l~~~ 230 (750)
+|+..++.+... ... . ......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 999987664110 000 0 012345
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-cHHHHHHHH---------H-
Q 004480 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLM---------N- 299 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll---------~- 299 (750)
+...|++++|+..|++..+..+ .+..++..+..++.+.|++++|+..|++..+..... +...|..++ .
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 6678999999999999988532 367889999999999999999999999998764332 222222221 1
Q ss_pred ----hhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHh
Q 004480 300 ----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (750)
Q Consensus 300 ----~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~ 375 (750)
...|++++|...|++..+.. +.+...+..+...+...|++++|.+.|+++.+. -+.+...+..+...|.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-----~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM-----DPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH-
Confidence 23479999999999998864 445677788899999999999999999999873 1233455666666553
Q ss_pred ccCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 004480 376 AKWWQMALKVKEDMLSAGVT--------PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (750)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 447 (750)
.++.++|+.+++.+...... .....+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 45677777777654322100 012235566777777888888888888877653 234566677777788888
Q ss_pred ChHHHHHHHHHHhhcccccccCCC-------CCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHH---
Q 004480 448 QFDRAFRLFRSWTLSKTQVALGED-------YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT--- 517 (750)
Q Consensus 448 ~~~~A~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--- 517 (750)
++++|...++++............ ..+........... +......++...
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~--------------------l~~~~~~~~~~~l~~ 569 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT--------------------LPRAQWNSNIQELAQ 569 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh--------------------CCchhcChhHHHHHH
Confidence 888888888877653321100000 00000000000000 000000111111
Q ss_pred ------HHHHHHHHH--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004480 518 ------YNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589 (750)
Q Consensus 518 ------~~~li~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 589 (750)
+......+. ++.++|..+++. .+.+...+..+...+.+.|+.++|+..|++..+.. +.+...+..+
T Consensus 570 ~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~l 643 (1157)
T PRK11447 570 RLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGL 643 (1157)
T ss_pred HHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 111222232 467888888772 24456677788899999999999999999998853 2257889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC
Q 004480 590 IKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651 (750)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g 651 (750)
+..|...|+.++|.+.++...+. .| +..++..+..++...|+.++ |.++|+++....
T Consensus 644 a~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~e---A~~~~~~al~~~ 701 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAA---AQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHH---HHHHHHHHhhhC
Confidence 99999999999999999988753 45 45667778888888998777 566888877643
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-18 Score=205.58 Aligned_cols=497 Identities=13% Similarity=0.045 Sum_probs=277.2
Q ss_pred hcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccc------------c
Q 004480 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL------------F 150 (750)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~------------~ 150 (750)
..|++++|+..++++++. .|...... ..+...+...|++++|+..|+++.+........ .
T Consensus 159 ~~g~~~~A~~~L~~ll~~--~P~~~~~~------~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~ 230 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNAD--YPGNTGLR------NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPV 230 (1157)
T ss_pred CCccHHHHHHHHHHHHHh--CCCCHHHH------HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCC
Confidence 458888888888888888 45433322 234444778899999999988876532100000 0
Q ss_pred cchhhhhhHHH----------------------------------HHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHH
Q 004480 151 DGSGFKLLKNE----------------------------------CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (750)
Q Consensus 151 ~~~~~~~l~~~----------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (750)
.......+... ...+...|++++|+..|++.+... |++...+..
T Consensus 231 ~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~ 308 (1157)
T PRK11447 231 SDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGA 308 (1157)
T ss_pred ChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 00000000000 112233566666666666665533 555555666
Q ss_pred HHHHHHcCCChHHHHHHhhhC----CCCcc--hH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004480 197 IVQLCVNKPDVNLAIRYACIV----PRADI--LF------------CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYI 258 (750)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~--~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 258 (750)
++..+.+.|++++|+..|++. |.+.. .+ ......+.+.|++++|+..|+++.+..+ .+...
T Consensus 309 Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a 387 (1157)
T PRK11447 309 LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYA 387 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHH
Confidence 666666666666666655442 22111 01 1123344556666666666666655322 23445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhh-cCChHHHHHHHHHHHHcCC--------CCCHhhHHH
Q 004480 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN-AHDLKFTLEVYKNMQKLGV--------MADMASYNI 329 (750)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~-~~~~~~a~~~~~~m~~~g~--------~~~~~~~~~ 329 (750)
+..+...+...|++++|++.|++..+... .+...+..+...+ .++.++|...++.+..... ......+..
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 466 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ 466 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence 55555666666666666666666654421 1222333333322 2345555555544322100 000112334
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004480 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (750)
Q Consensus 330 ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 409 (750)
+...+...|++++|.+.|++..+. -+-+...+..+...|.+.|++++|...++++.+... .+...+..+...+.
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~-----~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~ 540 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLAL-----DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 445555666666666666665542 122344455555566666666666666666654321 13333333444445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhh
Q 004480 410 NAGLVEQAMHLFEEMLQAGCEPNSQ---------CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480 (750)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~~~p~~~---------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (750)
+.++.++|...++.+......++.. .+..+...+...|+.++|.++++.
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---------------------- 598 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---------------------- 598 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----------------------
Confidence 5566666666665543222111111 112233445556666666665541
Q ss_pred hhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004480 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558 (750)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 558 (750)
.+.+...+..+-..+. ++.++|...|++..+.. +.+...+..+...|
T Consensus 599 ------------------------------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~ 647 (1157)
T PRK11447 599 ------------------------------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVD 647 (1157)
T ss_pred ------------------------------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1223333434444443 57899999999999863 23567889999999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcC
Q 004480 559 GGSGNVEGALQILKIMREDGMSP-DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI--QP---NLVTYITLLRARSRYG 632 (750)
Q Consensus 559 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~t~~~li~~~~~~g 632 (750)
...|+.++|++.++...+. .| +...+..+..++...|++++|.++++++....- .| +...+..+...+...|
T Consensus 648 ~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 9999999999999988764 44 456677788889999999999999999986421 12 2356666778888899
Q ss_pred CHHHHHHHHHHHHHHH-HcCCCCC
Q 004480 633 SLHEVQQCLAVYQDMW-KAGYKAN 655 (750)
Q Consensus 633 ~~~~~~~a~~~~~~m~-~~g~~p~ 655 (750)
+.++ |+..|++.. ..|+.|+
T Consensus 726 ~~~~---A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 726 QPQQ---ALETYKDAMVASGITPT 746 (1157)
T ss_pred CHHH---HHHHHHHHHhhcCCCCC
Confidence 9877 555666664 3556543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-20 Score=183.22 Aligned_cols=451 Identities=16% Similarity=0.166 Sum_probs=290.7
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHH
Q 004480 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (750)
Q Consensus 59 ~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (750)
++++....|.. ......|+..+-+.|++++|++.....-.. +|..-..++..... +.+..+++.-...-..
T Consensus 37 v~qq~~~t~~~-~~~~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai------~~q~~r~d~s~a~~~~ 107 (966)
T KOG4626|consen 37 VLQQFNKTHEG-SDDRLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAI------FFQGSRLDKSSAGSLL 107 (966)
T ss_pred HHHHhccCCcc-chhHHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhh------hhcccchhhhhhhhhh
Confidence 44555555665 444667777888899999999988877666 55544443333333 5666677765554444
Q ss_pred HHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC-
Q 004480 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (750)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (750)
.++. .|- ....++.+.+.+.. .|++.+|+.+++.+++.. |+....|..++.++...|+.+.|.+.|...
T Consensus 108 a~r~--~~q---~ae~ysn~aN~~ke---rg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~al 177 (966)
T KOG4626|consen 108 AIRK--NPQ---GAEAYSNLANILKE---RGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEAL 177 (966)
T ss_pred hhhc--cch---HHHHHHHHHHHHHH---hchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHH
Confidence 4442 231 22355555555444 899999999999999854 888888999999999999998888876553
Q ss_pred ---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHH
Q 004480 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293 (750)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 293 (750)
|...-+.+.+...+-..|++.+|...|.+.++. .|. .++|+.|...+-.+|+...|+.-|++.++.. |+
T Consensus 178 qlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~--- 250 (966)
T KOG4626|consen 178 QLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PN--- 250 (966)
T ss_pred hcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--Cc---
Confidence 333344445666677778888888888888773 344 4578888888888888888888888877542 21
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccC-HHHHHHHHHH
Q 004480 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKV 372 (750)
Q Consensus 294 ~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~li~~ 372 (750)
-...|-.|.+.|...+.+++|...|..... ..|+ ...+..|...
T Consensus 251 -----------------------------f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~------lrpn~A~a~gNla~i 295 (966)
T KOG4626|consen 251 -----------------------------FLDAYINLGNVYKEARIFDRAVSCYLRALN------LRPNHAVAHGNLACI 295 (966)
T ss_pred -----------------------------chHHHhhHHHHHHHHhcchHHHHHHHHHHh------cCCcchhhccceEEE
Confidence 133455555555555555555555555544 2232 3345555555
Q ss_pred HHhccCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHH
Q 004480 373 FADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (750)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 451 (750)
|-..|.++-|++.|++.++. .|+ ...|+.|..++...|++.+|++.+.+.+... .-.....+.|...|...|.+++
T Consensus 296 YyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred EeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchH
Confidence 55555555565555555553 222 3455555555555566666665555555432 2234455555555555555666
Q ss_pred HHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccH-HHHHHHHHHHH--hc
Q 004480 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT-TTYNILMKACC--TD 528 (750)
Q Consensus 452 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~--~~ 528 (750)
|.++|.....- .|.. ...|.+-..|. ++
T Consensus 373 A~~ly~~al~v-------------------------------------------------~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 373 ATRLYLKALEV-------------------------------------------------FPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred HHHHHHHHHhh-------------------------------------------------ChhhhhhhhhHHHHHHhccc
Confidence 55555543321 1211 12222323332 24
Q ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 004480 529 YYRVKALMNEMRTVGLSPNHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLF 606 (750)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 606 (750)
+++|..-+++... +.|+.. .|+.+...|-..|+++.|.+.+.+.+. +.|. ...++.|...|-..|++.+|++-|
T Consensus 404 l~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 404 LDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 5555555555555 567654 788999999999999999999999987 4666 567899999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHH
Q 004480 607 EEMKHYQIQPN-LVTYITLLRAR 628 (750)
Q Consensus 607 ~~m~~~g~~p~-~~t~~~li~~~ 628 (750)
++..+ ++|| +..|-.++.++
T Consensus 480 ~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 480 RTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHc--cCCCCchhhhHHHHHH
Confidence 99986 6787 44555555544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-20 Score=183.53 Aligned_cols=368 Identities=14% Similarity=0.116 Sum_probs=315.7
Q ss_pred hccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHH
Q 004480 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (750)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (750)
..++..|-. .+.|..++..+-..|++.+|+.+++.+++. +|.. .+.+.++..++...|+.+.|.+.|.+++
T Consensus 107 ~a~r~~~q~-ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~f------ida~inla~al~~~~~~~~a~~~~~~al 177 (966)
T KOG4626|consen 107 LAIRKNPQG-AEAYSNLANILKERGQLQDALALYRAAIEL--KPKF------IDAYINLAAALVTQGDLELAVQCFFEAL 177 (966)
T ss_pred hhhhccchH-HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--Cchh------hHHHhhHHHHHHhcCCCcccHHHHHHHH
Confidence 346667777 889999999999999999999999999999 6664 4555667777999999999999999999
Q ss_pred hcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC---
Q 004480 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--- 217 (750)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--- 217 (750)
+ +.|+.....+..+.|+++ .|+.++|...|-+.+... |.....|..|+-.+..+|+.-.|++.|++.
T Consensus 178 q--lnP~l~ca~s~lgnLlka------~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 178 Q--LNPDLYCARSDLGNLLKA------EGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred h--cCcchhhhhcchhHHHHh------hcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 7 788777666666666653 799999999999988744 888999999999999999999999999885
Q ss_pred -CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc-HHHH
Q 004480 218 -PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVF 294 (750)
Q Consensus 218 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~ 294 (750)
|.-..+|.+|...|...+.+++|+..|.+... ..|+ ..+|..+...|-.+|.++-|+..|++..+. .|+ ...|
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay 323 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAY 323 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHH
Confidence 45558999999999999999999999999887 3454 678888888899999999999999999876 455 4578
Q ss_pred HHHHHhhc--CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccC-HHHHHHHHH
Q 004480 295 NSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVK 371 (750)
Q Consensus 295 ~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~li~ 371 (750)
+.+-.+.. |++.+|++.|+...... +......+.|.+.|...|.+++|..+|....+ +.|. ...++.|..
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~------v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE------VFPEFAAAHNNLAS 396 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh------hChhhhhhhhhHHH
Confidence 88877754 89999999999998764 34577889999999999999999999999887 4555 456999999
Q ss_pred HHHhccCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCh
Q 004480 372 VFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQF 449 (750)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~ 449 (750)
.|-+.|++++|+..|++.++- .|+ ...|+.+...|...|+++.|.+.+.+..+. .|. ...++.|...|-.+|++
T Consensus 397 i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCc
Confidence 999999999999999999874 666 578999999999999999999999999876 453 56789999999999999
Q ss_pred HHHHHHHHHHhhc
Q 004480 450 DRAFRLFRSWTLS 462 (750)
Q Consensus 450 ~~A~~~~~~~~~~ 462 (750)
.+|..-|++..+.
T Consensus 473 ~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 473 PEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHHHHcc
Confidence 9999999987653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-16 Score=178.48 Aligned_cols=500 Identities=9% Similarity=-0.049 Sum_probs=285.7
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHH
Q 004480 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (750)
Q Consensus 59 ~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (750)
+.+.+..+|++ ...+..+++.+.+.|++++|+..++++++. +|+........ ...+++++|..++++
T Consensus 67 l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~L----------a~i~~~~kA~~~ye~ 133 (987)
T PRK09782 67 FEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSL----------AAIPVEVKSVTTVEE 133 (987)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH----------HHhccChhHHHHHHH
Confidence 33448899999 899999999999999999999999999999 66543332221 122999999999999
Q ss_pred HHhcCCCccccccchhhhhhHHH-----HHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHH
Q 004480 139 LNELGVAPLELFDGSGFKLLKNE-----CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (750)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~-----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (750)
+.+. .|+.... +..+... ...|. +.++|.+.++ .......|........+.+.|.+.+++++|+..
T Consensus 134 l~~~--~P~n~~~---~~~la~~~~~~~~l~y~---q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 134 LLAQ--QKACDAV---PTLRCRSEVGQNALRLA---QLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHh--CCCChhH---HHHHHHHhhccchhhhh---hHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9984 5543311 1111111 00111 2233333333 222121122222333335555555555555555
Q ss_pred hhhC----CCCcchHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004480 214 ACIV----PRADILFCNFVREFGK-KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (750)
Q Consensus 214 ~~~~----~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (750)
+..+ |.+......|...|.. .++ +++..++.. .++-+...+..+...|.+.|+.++|.++++++...-..
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 5443 2222333344444444 244 444444332 12234455555555555555555555555544322110
Q ss_pred -ccHHHH-------------------------------------------------------------------------
Q 004480 289 -LNIYVF------------------------------------------------------------------------- 294 (750)
Q Consensus 289 -~~~~~~------------------------------------------------------------------------- 294 (750)
|+..+|
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 111111
Q ss_pred ----------------------HHHHHhhcCChHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHHcCC---hHHHHHH-
Q 004480 295 ----------------------NSLMNVNAHDLKFTLEVYKNMQKL--GVMADMASYNILLKACCLAGN---TVLAQEI- 346 (750)
Q Consensus 295 ----------------------~~ll~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~---~~~A~~~- 346 (750)
.+.+....|+.++|.++|...... ....+....+-++..|.+.+. ..++..+
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 011111123334444444444331 011223333345555555544 2222111
Q ss_pred ---------------------HHHHHHhhhcCCCcc--CHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004480 347 ---------------------YGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (750)
Q Consensus 347 ---------------------~~~~~~~~~~g~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (750)
++..... -+..++ +...|..+..++.. ++.++|...+.+.... .|+......
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a--l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~ 514 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRL--LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRA 514 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHh--cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHH
Confidence 1111111 000122 45556666666655 6777777766666654 345444333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhh
Q 004480 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483 (750)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (750)
+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...+++....
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------------------- 571 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--------------------- 571 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------
Confidence 444445777777777777776543 344445555566677777777777777766542
Q ss_pred hhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH---hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004480 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (750)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~---~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 560 (750)
.|+.......+.... ++.++|...+++..+. .|+...|..+...+.+
T Consensus 572 ----------------------------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 572 ----------------------------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQ 621 (987)
T ss_pred ----------------------------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 232222222222222 6889999999998874 5677888889999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 004480 561 SGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQ 638 (750)
Q Consensus 561 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~~~ 638 (750)
.|+.++|+..+++..+. .|+ ...++.+...+...|+.++|.+.|++..+. .| +...+..+..++...|+.+++
T Consensus 622 lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA- 696 (987)
T PRK09782 622 RHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAAT- 696 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH-
Confidence 99999999999999885 454 667788888899999999999999998873 56 577888999999999998874
Q ss_pred HHHHHHHHHHHc
Q 004480 639 QCLAVYQDMWKA 650 (750)
Q Consensus 639 ~a~~~~~~m~~~ 650 (750)
...|++..+.
T Consensus 697 --~~~l~~Al~l 706 (987)
T PRK09782 697 --QHYARLVIDD 706 (987)
T ss_pred --HHHHHHHHhc
Confidence 5566666653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-18 Score=183.77 Aligned_cols=311 Identities=14% Similarity=0.116 Sum_probs=188.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCCh
Q 004480 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305 (750)
Q Consensus 226 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 305 (750)
.....+...|++++|+..|.++.+.++ .+..++..+...+...|++++|..+++.+...+..++.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-------------- 104 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE-------------- 104 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH--------------
Confidence 334456677889999999999987542 35668888888889999999999998888764211110
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHH
Q 004480 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (750)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~ 385 (750)
.+...+..+...|.+.|++++|..+|+++.+. .+.+..+++.++..+.+.|++++|.+.
T Consensus 105 ----------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (389)
T PRK11788 105 ----------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDE-----GDFAEGALQQLLEIYQQEKDWQKAIDV 163 (389)
T ss_pred ----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-----CcchHHHHHHHHHHHHHhchHHHHHHH
Confidence 01234556666777777777777777776642 234556677777777777777777777
Q ss_pred HHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 386 KEDMLSAGVTPNT----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 386 ~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
++.+.+.+..+.. ..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 164 AERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777665543321 234556666777777777777777776643 23445666667777777777777777777653
Q ss_pred cccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 004480 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRT 541 (750)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~ 541 (750)
.. |+
T Consensus 243 ~~-------------------------------------------------p~--------------------------- 246 (389)
T PRK11788 243 QD-------------------------------------------------PE--------------------------- 246 (389)
T ss_pred HC-------------------------------------------------hh---------------------------
Confidence 21 10
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004480 542 VGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY 621 (750)
Q Consensus 542 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 621 (750)
....+++.++.+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|.++++++.+. .|+..++
T Consensus 247 ----~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~ 318 (389)
T PRK11788 247 ----YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGF 318 (389)
T ss_pred ----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHH
Confidence 01223445555555666666666666655553 344444455555566666666666666655542 4555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHH
Q 004480 622 ITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDT 657 (750)
Q Consensus 622 ~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~ 657 (750)
+.++..+...+..++..+++.++++|.+++++|++.
T Consensus 319 ~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 319 HRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 555555543211111222455556666555555544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-18 Score=177.25 Aligned_cols=286 Identities=10% Similarity=0.059 Sum_probs=183.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCcc--CHHHHHHHHHHHHhccC
Q 004480 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKW 378 (750)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~--~~~~~~~li~~~~~~g~ 378 (750)
..++++.|...|.++.+.+ +.+..++..+...+...|++++|..+++.+.. .+...+ ....+..+...|...|+
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLS---RPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3344555555555555432 23444566666666666666666666666553 110000 12345555666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHhCChHHHHH
Q 004480 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS----QCCNILLQACVEACQFDRAFR 454 (750)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~A~~ 454 (750)
+++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666665542 234555666666666666666666666666554322111 123334444455555555555
Q ss_pred HHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHH
Q 004480 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA 534 (750)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~ 534 (750)
.|++
T Consensus 202 ~~~~---------------------------------------------------------------------------- 205 (389)
T PRK11788 202 LLKK---------------------------------------------------------------------------- 205 (389)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 5544
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004480 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI 614 (750)
Q Consensus 535 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 614 (750)
+.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|.+.++++.+.
T Consensus 206 ----al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 206 ----ALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred ----HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 44321 12345677788999999999999999999987532222567899999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----hhhhhhhcccc
Q 004480 615 QPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE----GVIQDKNQNQG 679 (750)
Q Consensus 615 ~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~~~~~~ 679 (750)
.|+...+..+...+.+.|++++ |..+++++.+. .|+..+++.++..++. |...++....+
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~---A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEA---AQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHH---HHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 6887788999999999999777 66788888765 6899999999988773 35555554433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-16 Score=172.98 Aligned_cols=433 Identities=11% Similarity=-0.012 Sum_probs=268.1
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccccc
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (750)
..+...+..+.+.|++++|+..|++++...++|. .+.++...|.+.|++++|++.++++++ +.|+..
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~---------~~~n~a~~~~~l~~~~~Ai~~~~~al~--l~p~~~-- 194 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV---------YYSNRAACHNALGDWEKVVEDTTAALE--LDPDYS-- 194 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHhCCHHHHHHHHHHHHH--cCCCCH--
Confidence 4566788899999999999999999998844432 234566668899999999999999997 456432
Q ss_pred chhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHH
Q 004480 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (750)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~ 231 (750)
..+......+...|++++|+..|..+...+ +........++..+........+...+...|.+...+..+...+
T Consensus 195 ----~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 195 ----KALNRRANAYDGLGKYADALLDLTASCIID--GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 334444445556899999999887766533 21111111222222221222344444455455444444443332
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCcc-HHHHHHHHHh--hcC
Q 004480 232 GKKRDLVSALRAYDASKKHLSSPNM-YICRTIIDV---CGICGDYMKSRAIYEDLRSQN-VTLN-IYVFNSLMNV--NAH 303 (750)
Q Consensus 232 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~~~-~~~~~~ll~~--~~~ 303 (750)
...+......-++...+ ..+.. ..+..+... ....+++++|.+.|+...+.+ ..|+ ...|+.+-.. ..|
T Consensus 269 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 269 -QSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred -HHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 21111122221221111 11110 111111111 123478899999999988764 2233 2333333332 347
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHH
Q 004480 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (750)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~ 383 (750)
++++|+..|++..+.. +.+...|..+...+...|++++|...|+++.+. -+.+...|..+...+...|++++|.
T Consensus 346 ~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~ 419 (615)
T TIGR00990 346 KHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDPDIYYHRAQLHFIKGEFAQAG 419 (615)
T ss_pred CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7888888888777653 223557777778888888888888888887763 1345667888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcc
Q 004480 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (750)
Q Consensus 384 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 463 (750)
..|++.+... +.+...+..+...+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|.+.|++.....
T Consensus 420 ~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 420 KDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 8888888764 2356677778888888888888888888887652 3356778888888888888888888887755421
Q ss_pred cccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHHcC
Q 004480 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVG 543 (750)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~ 543 (750)
.. +..++
T Consensus 498 p~------------------------------------------------~~~~~------------------------- 504 (615)
T TIGR00990 498 KE------------------------------------------------TKPMY------------------------- 504 (615)
T ss_pred Cc------------------------------------------------ccccc-------------------------
Confidence 10 00000
Q ss_pred CCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 544 LSPNH-ISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 544 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
.+. ..++..+..+...|++++|..++++.... .|+ ...+..+...+.+.|++++|.++|++..+
T Consensus 505 --~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 505 --MNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred --ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 000 01111222233457788888888877664 333 44677777888888888888888887765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.7e-15 Score=164.45 Aligned_cols=516 Identities=11% Similarity=-0.008 Sum_probs=323.1
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
+..+...+..+...|++++|+..|+++++. +|+.... ...+...|.+.|++++|+..++++.+ ..|+...
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~--dP~n~~~------~~~LA~~yl~~g~~~~A~~~~~kAv~--ldP~n~~ 113 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQ--VPDNIPL------TLYLAEAYRHFGHDDRARLLLEDQLK--RHPGDAR 113 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHH
Confidence 445555556666679999999999999999 6765322 24567779999999999999999998 4664432
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHH--------HHcCCChHHHHHHhhhCCCC--
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL--------CVNKPDVNLAIRYACIVPRA-- 220 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~-- 220 (750)
....+. . .+++++|..+++++.... |.+...+..+... |.+.+...+++. ....+++
T Consensus 114 ---~~~~La----~---i~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~ 180 (987)
T PRK09782 114 ---LERSLA----A---IPVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPE 180 (987)
T ss_pred ---HHHHHH----H---hccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCC
Confidence 222221 1 388899999999999966 8888888888777 777777778887 5555444
Q ss_pred cc-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 004480 221 DI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (750)
Q Consensus 221 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 298 (750)
.. ....+...|.+.|++++|+.++.++.+.++ .+......+..+|.+ .++ +++..+++. .++-|...+..+.
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala 254 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYA 254 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHH
Confidence 33 344458999999999999999999999764 345557777778887 466 888777553 2335666666766
Q ss_pred Hhh--cCChHHHHHHHHHHHHcCCC-CCHhhH------------------------------HHHHHHHHHcCChHHHHH
Q 004480 299 NVN--AHDLKFTLEVYKNMQKLGVM-ADMASY------------------------------NILLKACCLAGNTVLAQE 345 (750)
Q Consensus 299 ~~~--~~~~~~a~~~~~~m~~~g~~-~~~~~~------------------------------~~ll~~~~~~g~~~~A~~ 345 (750)
..+ .|+.+.|.+++.++...-.. |...++ -.++..+.+.++++-+++
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 654 36777777777666432111 111111 111333444444444433
Q ss_pred HHH-----------------------------HHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHH-CC-C
Q 004480 346 IYG-----------------------------EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS-AG-V 394 (750)
Q Consensus 346 ~~~-----------------------------~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g-~ 394 (750)
+.. .+.+ . .+-+......+.....+.|+.++|.++|+.... .+ -
T Consensus 335 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~---~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (987)
T PRK09782 335 LLATLPANEMLEERYAVSVATRNKAEALRLARLLYQ---Q--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA 409 (987)
T ss_pred HhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHh---c--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc
Confidence 321 1111 0 011333333333334455555555555555443 11 1
Q ss_pred CC----------------------------------------------------------------CHHHHHHHHHHHHh
Q 004480 395 TP----------------------------------------------------------------NTITWSSLINACAN 410 (750)
Q Consensus 395 ~p----------------------------------------------------------------~~~~~~~li~~~~~ 410 (750)
.+ +...|..+..++..
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 12 23344444444443
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccc
Q 004480 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490 (750)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (750)
++.++|...+.+.... .|+......+..++.+.|++++|...|+++...
T Consensus 490 -~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---------------------------- 538 (987)
T PRK09782 490 -TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH---------------------------- 538 (987)
T ss_pred -CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc----------------------------
Confidence 4445555544444433 233332222223334555555555555543221
Q ss_pred cCCCCccCCCccccccccCCCCccHHHHHHHHHHHH--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 004480 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568 (750)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 568 (750)
.|+...+..+...+. ++.++|...++...+.. +++...+..+.......|++++|.
T Consensus 539 ---------------------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 539 ---------------------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred ---------------------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 233333333333333 47889999999998864 223333434444555679999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004480 569 QILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDM 647 (750)
Q Consensus 569 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m 647 (750)
..+++..+. .|+...|..+...+.+.|+.++|.+.|++..+. .| +...++.+..++...|+.++ |+..|++.
T Consensus 597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee---Ai~~l~~A 669 (987)
T PRK09782 597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQ---SREMLERA 669 (987)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHH
Confidence 999999874 678889999999999999999999999999874 56 56777888888999999776 56678877
Q ss_pred HHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccc
Q 004480 648 WKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEV 681 (750)
Q Consensus 648 ~~~g~~p~~~~~~~li~~~~~-~~~~~~~~~~~~~ 681 (750)
.+... -+...+..+-..+.. |.+.++....+..
T Consensus 670 L~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 670 HKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 76542 234445555555554 7777777654433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-15 Score=168.28 Aligned_cols=329 Identities=13% Similarity=0.032 Sum_probs=180.1
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccccc
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (750)
.-....+..+.+.|++++|+.+++..+.. .|.....+. .++......|++++|++.|+++.+ ..|+..
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~------~l~~~~l~~g~~~~A~~~l~~~l~--~~P~~~-- 110 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLR------RWVISPLASSQPDAVLQVVNKLLA--VNVCQP-- 110 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHH------HHhhhHhhcCCHHHHHHHHHHHHH--hCCCCh--
Confidence 33445667777788888888888888888 444333222 233335678888888888888887 455443
Q ss_pred chhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHH
Q 004480 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNF 227 (750)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l 227 (750)
.. +......+...|++++|+..+++++... |++...+..++..+...|++++|...+..+ |.+...+..+
T Consensus 111 -~a---~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~ 184 (656)
T PRK15174 111 -ED---VLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC 184 (656)
T ss_pred -HH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 12 2222233444788888888888877743 666666666666666667766666655432 3333333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHH
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 307 (750)
. .+.+.|++++|...++.+.+....++...+..+...+.+.|++++|+..|++..+..
T Consensus 185 ~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--------------------- 242 (656)
T PRK15174 185 L-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--------------------- 242 (656)
T ss_pred H-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------------
Confidence 2 355666666666666666554332333334444555666666666666666665442
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHH----HHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHH
Q 004480 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL----AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (750)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~----A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~ 383 (750)
+.+...+..+...+...|++++ |...|+++... -+.+...+..+...+...|++++|.
T Consensus 243 -------------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 243 -------------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred -------------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 2234444445555555555543 45555554441 1223344555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-CCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 384 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
..+++....... +...+..+...+.+.|++++|...|+++... .|+.. .+..+..++...|+.++|...|++...
T Consensus 305 ~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 305 PLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555543211 2334444555555555555555555555443 22221 222233444555555555555555443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-15 Score=167.78 Aligned_cols=286 Identities=10% Similarity=-0.012 Sum_probs=219.6
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHH
Q 004480 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (750)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 241 (750)
.+.|++++|+.+++..+... |.....+..++......|++++|+..++.+ |.+..++..+...+.+.|++++|+
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 33899999999999988855 777778888888888899999999888774 777788888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC
Q 004480 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVM 321 (750)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~ 321 (750)
..|+++.+..+ .+...+..+...+...|++++|...++.+......+....+........|++++|...++.+.+....
T Consensus 131 ~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 131 DLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999987422 35678888889999999999999999988765433322222222223447888888888888765433
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHH----HHHHHHHHHHCCCCCC
Q 004480 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM----ALKVKEDMLSAGVTPN 397 (750)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~ 397 (750)
++...+..+...+...|++++|...++..... .+.+...+..+...+...|++++ |...|++...... .+
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~ 283 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALAR-----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DN 283 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CC
Confidence 44445555667788889999999988888763 23456677788888888888885 7888888887642 35
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.|+.+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6788888888888999999999998888763 33456677777888888898888888877654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-15 Score=166.00 Aligned_cols=418 Identities=11% Similarity=-0.015 Sum_probs=248.7
Q ss_pred HHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHH
Q 004480 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (750)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (750)
+..+.+.|++++|+..|+++++ +.|+.. . +.+.+..+...|++++|++.+++.++.. |+....+..++.
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~--~~p~~~----~---~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~ 202 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIE--CKPDPV----Y---YSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRAN 202 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--cCCchH----H---HHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHH
Confidence 3447799999999999999997 456432 2 3344444555899999999999998855 888888888888
Q ss_pred HHHcCCChHHHHHHhhhC---CCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004480 200 LCVNKPDVNLAIRYACIV---PRAD-ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (750)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~---~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 275 (750)
++...|++++|+..+... ++.. .....++..+.. ..+........+... ++...+..+.. +.........
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcc
Confidence 899999998888766543 1111 111111111111 122222222222211 11122222222 1111111111
Q ss_pred HHHHHHHHhCCCCcc-----HHHHHHHHHh-hcCChHHHHHHHHHHHHcC-C-CCCHhhHHHHHHHHHHcCChHHHHHHH
Q 004480 276 RAIYEDLRSQNVTLN-----IYVFNSLMNV-NAHDLKFTLEVYKNMQKLG-V-MADMASYNILLKACCLAGNTVLAQEIY 347 (750)
Q Consensus 276 ~~~~~~m~~~g~~~~-----~~~~~~ll~~-~~~~~~~a~~~~~~m~~~g-~-~~~~~~~~~ll~~~~~~g~~~~A~~~~ 347 (750)
..-+....+. .++ ...+...+.. ..+++++|.+.|+...+.+ . +.+...++.+...+...|++++|...|
T Consensus 277 ~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 277 PAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1111111110 111 0001111111 1246677777777776653 1 223445666666666777777777777
Q ss_pred HHHHHhhhcCCCccC-HHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004480 348 GEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (750)
Q Consensus 348 ~~~~~~~~~g~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (750)
+.... ..|+ ...|..+...+...|++++|...|++.++.. +.+...|..+...+...|++++|...|++..+
T Consensus 355 ~kal~------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 355 SKSIE------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHHH------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77665 2333 4456666666777777777777777776653 22456666677777777777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCcccccc
Q 004480 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506 (750)
Q Consensus 427 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (750)
.. +.+...+..+..++.+.|++++|...|++..
T Consensus 428 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al---------------------------------------------- 460 (615)
T TIGR00990 428 LD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCK---------------------------------------------- 460 (615)
T ss_pred cC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------------------------------------
Confidence 53 2344555556666666677776666665543
Q ss_pred ccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH---
Q 004480 507 KRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV--- 583 (750)
Q Consensus 507 ~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--- 583 (750)
+. .+.+...|+.+...+...|++++|+..|++..+..-..+.
T Consensus 461 ----------------------------------~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~ 505 (615)
T TIGR00990 461 ----------------------------------KN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505 (615)
T ss_pred ----------------------------------Hh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc
Confidence 21 1224567888888999999999999999998874211111
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Q 004480 584 ---VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (750)
Q Consensus 584 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~ 650 (750)
..++..+..+...|++++|.+++++..+. .|+ ...+..+...+.+.|+.++ |+..|++..+.
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~e---Ai~~~e~A~~l 571 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDE---ALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHH---HHHHHHHHHHH
Confidence 12222233344579999999999998874 454 5578899999999999877 56677776554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-14 Score=148.77 Aligned_cols=565 Identities=13% Similarity=0.048 Sum_probs=343.7
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhH-HhhhhHHHHHHHHHhhhhcCchhHHHHHHH
Q 004480 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKF-ASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (750)
Q Consensus 59 ~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~ 137 (750)
|...++..|++ ...+.--+...-..|+|-.|+.+|..++...+ ... +..+..+.+ +++.|+.+.|+..|+
T Consensus 153 F~~Vl~~sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~inp--~~~aD~rIgig~C------f~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 153 FHFVLKQSPDN-ILALLGKARIAYNKKDYRGALKYYKKALRINP--ACKADVRIGIGHC------FWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHhhCCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcCc--ccCCCccchhhhH------HHhccchhhHHHHHH
Confidence 44447777888 55554555555667899999999999887732 221 111223333 678999999999999
Q ss_pred HHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC
Q 004480 138 KLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (750)
Q Consensus 138 ~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (750)
++++ +.|... ..+-.|.-.-...-+...+..++..+.+.-.. .+.++...+.|..-+...+++..+..+...+
T Consensus 224 ralq--Ldp~~v---~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 224 RALQ--LDPTCV---SALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEHA 296 (1018)
T ss_pred HHHh--cChhhH---HHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 9987 566332 11111111111222245566677777665553 3777888888888888888888888876553
Q ss_pred CC-------CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc
Q 004480 218 PR-------ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290 (750)
Q Consensus 218 ~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 290 (750)
-. -...|..+..+|-..|++++|...|.+..+....--+..+--+.+.+.+.|+++.+...|+...+. .||
T Consensus 297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~ 374 (1018)
T KOG2002|consen 297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPN 374 (1018)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--Ccc
Confidence 21 124577788888888999999888887776432111345556778888888898888888888766 344
Q ss_pred HH-HHHHHHHhhcC------ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHH-hhhcCCCccC
Q 004480 291 IY-VFNSLMNVNAH------DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH-LEAKGVLKLD 362 (750)
Q Consensus 291 ~~-~~~~ll~~~~~------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~g~~~~~ 362 (750)
.. |...+-..+++ ..+.|..++....+.- +.|...|-.+...+... +...++..|..+.. +...+ -.+.
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~-~~ip 451 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKG-KQIP 451 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcC-CCCC
Confidence 43 33333333433 2355666666655543 44566666665555444 44444666666552 33344 3467
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004480 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSA---GVTPNT------ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (750)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 433 (750)
....|.+.......|+++.|...|+..... ...+|. .+--.+...+-..++++.|.+.|..+.+. .|.-
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~Y 529 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGY 529 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--Cchh
Confidence 778888888888888888888888877654 112222 22333555666677888888888888775 3443
Q ss_pred HH-HHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCC
Q 004480 434 QC-CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512 (750)
Q Consensus 434 ~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (750)
+. |--+....-..+...+|...++.........+....+.|... +.... ... ....+.....+-...
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~----l~k~~-~~~-------a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH----LKKSE-WKP-------AKKKFETILKKTSTK 597 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH----Hhhhh-hcc-------cccHHHHHHhhhccC
Confidence 32 322322222346667777777766543221110000000000 00000 000 000000011111123
Q ss_pred ccHHHHHHHHHHHHh--------------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004480 513 PTTTTYNILMKACCT--------------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG 578 (750)
Q Consensus 513 p~~~~~~~li~~~~~--------------~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 578 (750)
+|.++.-+|-+.|.. ..++|.++|.+..+.. +-|.+.-|-+.-.++..|++.+|..+|.+..+..
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 566655555443321 3568889999888863 2367777888888999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHH
Q 004480 579 MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDT 657 (750)
Q Consensus 579 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~ 657 (750)
. -+..+|-.+..+|..+|++..|+++|+...+ ..-.-+..+.+.|-+++.+.|.+.++.++ ........+.-...
T Consensus 677 ~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~---ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 677 S-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA---LLKARHLAPSNTSV 752 (1018)
T ss_pred h-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHhCCccchH
Confidence 3 2456788888999999999999999998664 33345788899999999999987775443 33333333322344
Q ss_pred HHHHHH
Q 004480 658 YLKELI 663 (750)
Q Consensus 658 ~~~~li 663 (750)
.||..+
T Consensus 753 ~FN~a~ 758 (1018)
T KOG2002|consen 753 KFNLAL 758 (1018)
T ss_pred HhHHHH
Confidence 455443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.6e-14 Score=146.07 Aligned_cols=537 Identities=13% Similarity=0.087 Sum_probs=356.0
Q ss_pred cccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc
Q 004480 63 VRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (750)
Q Consensus 63 l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (750)
+...|...+...-.+.-.+.+.|+.+.|+..|+.+++. +|.....++.++.+ --.+.....+..+...+..+...
T Consensus 191 l~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~---~l~~~d~~s~~~~~~ll~~ay~~ 265 (1018)
T KOG2002|consen 191 LRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEV---DLNFNDSDSYKKGVQLLQRAYKE 265 (1018)
T ss_pred HhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHH---HHHccchHHHHHHHHHHHHHHhh
Confidence 56666554555556667888999999999999999999 77766665554433 22233456677888888888764
Q ss_pred CCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCC-CcccccHHHHHHHHHcCCChHHHHHHhhhC----
Q 004480 143 GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-VKELDEEFRIVQLCVNKPDVNLAIRYACIV---- 217 (750)
Q Consensus 143 ~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---- 217 (750)
.|+.. ..++.|.+ .+...|++..++.+...+...... +.-...+..+++.+-.+|++++|..+|...
T Consensus 266 --n~~nP---~~l~~LAn---~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 266 --NNENP---VALNHLAN---HFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred --cCCCc---HHHHHHHH---HHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 23221 34444444 344489999999999888765421 233445788999999999999999998663
Q ss_pred CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCccHH
Q 004480 218 PRA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----DYMKSRAIYEDLRSQNVTLNIY 292 (750)
Q Consensus 218 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~ 292 (750)
+++ ...+.-|...|.+.|+++.+...|+.+.+.. +.+..+...+...|...+ ..+.|..++....+.- +.|..
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~ 415 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSE 415 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHH
Confidence 333 2445568999999999999999999998842 235667778888787775 4566777776666543 44566
Q ss_pred HHHHHHHhhc-CChHHHHHHHHH----HHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCH----
Q 004480 293 VFNSLMNVNA-HDLKFTLEVYKN----MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV---- 363 (750)
Q Consensus 293 ~~~~ll~~~~-~~~~~a~~~~~~----m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~---- 363 (750)
.|-.+-..+. ++...++..|.. |...+-.+-+...|.+...+...|+++.|...|+........ ...+|.
T Consensus 416 a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~-~~n~de~~~~ 494 (1018)
T KOG2002|consen 416 AWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE-VANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh-hcCccccccc
Confidence 6766666543 455555555543 445566688899999999999999999999999988763110 012222
Q ss_pred --HHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004480 364 --FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (750)
Q Consensus 364 --~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 440 (750)
.+--.+...+-..++.+.|.+.|..+... .|. +..|--++-.....+...+|...+.+..+.. ..++..++.+-
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G 571 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLG 571 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHH
Confidence 23334555666778999999999999986 333 3334444433334577889999999988764 55667777777
Q ss_pred HHHHHhCChHHHHHHHHHHhhcccccccCCC--CCCchhhhhhhhhhhcccccCCCCccCCCccccccccCC----C-Cc
Q 004480 441 QACVEACQFDRAFRLFRSWTLSKTQVALGED--YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS----F-KP 513 (750)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~p 513 (750)
..+.+...+..|.+-|......-...+.... ..|. ..+..+..... .+ .....++..++...+ . +.
T Consensus 572 ~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN-~~~~~l~~~~r-----n~-ek~kk~~~KAlq~y~kvL~~dpk 644 (1018)
T KOG2002|consen 572 NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN-VYIQALHNPSR-----NP-EKEKKHQEKALQLYGKVLRNDPK 644 (1018)
T ss_pred HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH-HHHHHhccccc-----Ch-HHHHHHHHHHHHHHHHHHhcCcc
Confidence 7888888888888866665543222111000 0011 00000000000 00 001112222222222 1 22
Q ss_pred cHHHHHH--HHHHHHhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH
Q 004480 514 TTTTYNI--LMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED-GMSPDVVAYTTAI 590 (750)
Q Consensus 514 ~~~~~~~--li~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li 590 (750)
|...-|. ++-+.++++..|..+|....+... -+..+|-.+.++|..+|++..|+++|+...+. .-.-+....+.|.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 3333332 344556789999999999998643 24567888999999999999999999886654 4455788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004480 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (750)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 626 (750)
.++.+.|++.+|.+.+.........-..+.||..+-
T Consensus 724 ra~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 999999999999999988876433333455555443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-14 Score=133.38 Aligned_cols=320 Identities=14% Similarity=0.197 Sum_probs=234.9
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHH-HHHHHHHHhCCCCCcccccHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMF-VGLMEVLEEFRLPVKELDEEFRIVQLC 201 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (750)
....|...++.-+|++|.+.|+.-+...... +.+..+.+ ...++.-| .+.|-.|...| .+....|
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~----L~~LV~~~-Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW------- 190 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLE----LFRLVTYY-NSSNVPFAEWEEFVGMRNFG--EDSTSSW------- 190 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHH----HHHHHHhh-cCCCCcchhHHHHhhccccc--ccccccc-------
Confidence 3468899999999999998876655442222 23322222 22222211 12233333333 2222223
Q ss_pred HcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004480 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (750)
Q Consensus 202 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (750)
+.|. .|.-+|+..|..+.++..+|.++|+--..+.|..++++......+.+..+||.+|.+-.-..+ .+++.+
T Consensus 191 -K~G~--vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~E 263 (625)
T KOG4422|consen 191 -KSGA--VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAE 263 (625)
T ss_pred -cccc--HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHH
Confidence 2333 455788999999999999999999999999999999999887788899999999986544433 689999
Q ss_pred HHhCCCCccHHHHHHHHHhhc--CChH----HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHH-HHHHHHHHH-Hh
Q 004480 282 LRSQNVTLNIYVFNSLMNVNA--HDLK----FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL-AQEIYGEVK-HL 353 (750)
Q Consensus 282 m~~~g~~~~~~~~~~ll~~~~--~~~~----~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~-A~~~~~~~~-~~ 353 (750)
|.+..+.||..|||+++.+.+ |+++ .|.+++.+|++-|+.|...+|..+|..+++.++..+ |..+..++. .+
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 999999999999999999754 5554 468899999999999999999999999999988755 333433333 22
Q ss_pred hhcC---CCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004480 354 EAKG---VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG----VTPN---TITWSSLINACANAGLVEQAMHLFEE 423 (750)
Q Consensus 354 ~~~g---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~ 423 (750)
.++. .-+.|..-|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.....|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 112345567778888889999999999887665321 2333 23467788888999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcc
Q 004480 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (750)
Q Consensus 424 m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 463 (750)
|.-+-+-|+..+...++++..-.|.++-.-+++..+...|
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 9988888999999999999999999998888888776554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-14 Score=160.98 Aligned_cols=416 Identities=13% Similarity=0.032 Sum_probs=227.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
+......+....-.|+.++|+.++.+..... |.. ...+..+...+...|++++|.+.|+++++ ..|+..
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~------a~~~~~lA~~~~~~g~~~~A~~~~~~al~--~~P~~~- 83 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLP------ARGYAAVAVAYRNLKQWQNSLTLWQKALS--LEPQND- 83 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-
Confidence 5555566777777888888888888877642 221 12223444557788888888888888887 344332
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHH
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 226 (750)
.. .......+...|++++|+..+++++... |++.. +..++.++...|++++|+..++.+ |.+..++..
T Consensus 84 --~a---~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 84 --DY---QRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred --HH---HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 11 1222233445788888888888887754 66655 666666666666666666555442 444445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHh
Q 004480 227 FVREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (750)
Q Consensus 227 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (750)
+...+...+..+.|+..++.... .|+. .....++......+. .
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~----------------------------~ 204 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR----------------------------S 204 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc----------------------------C
Confidence 55555555566666655554432 1220 000111111100000 0
Q ss_pred hcCCh---HHHHHHHHHHHHc-CCCCCHh-hH----HHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHH
Q 004480 301 NAHDL---KFTLEVYKNMQKL-GVMADMA-SY----NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (750)
Q Consensus 301 ~~~~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~ 371 (750)
..+++ +.|++.++.+.+. ...|+.. .+ ...+..+...|++++|...|+.+.+. +...|+. ....+..
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~---~~~~P~~-a~~~la~ 280 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE---GQIIPPW-AQRWVAS 280 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---CCCCCHH-HHHHHHH
Confidence 00112 4455555555543 1122211 11 11123445567777777777776651 1101221 1122355
Q ss_pred HHHhccCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCC---HH
Q 004480 372 VFADAKWWQMALKVKEDMLSAGVTP---NTITWSSLINACANAGLVEQAMHLFEEMLQAG-----------CEPN---SQ 434 (750)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----------~~p~---~~ 434 (750)
.|...|++++|+.+|+++....... .......+..++.+.|++++|...++.+.+.. -.|+ ..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 6777777777777777766543211 12345555666677777777777777776542 1123 22
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCcc
Q 004480 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (750)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 514 (750)
.+..+...+...|+.++|.++++++....
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~--------------------------------------------------- 389 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNA--------------------------------------------------- 389 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------------------------
Confidence 44556667778888888888888875431
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 004480 515 TTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVC 593 (750)
Q Consensus 515 ~~~~~~li~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~ 593 (750)
+-+...+..+...+...|+.++|++.+++..+. .|+ ...+-.....+
T Consensus 390 ------------------------------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 390 ------------------------------PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTA 437 (765)
T ss_pred ------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHH
Confidence 123344555566666666677777777666653 344 44555555566
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004480 594 VRSKRLKQAFSLFEEMKHYQIQPNLVTYITLL 625 (750)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 625 (750)
.+.|++++|.++++++.+ ..|+......+=
T Consensus 438 l~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~ 467 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVA--REPQDPGVQRLA 467 (765)
T ss_pred HHhCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 666677777777776665 245444333333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-13 Score=152.15 Aligned_cols=469 Identities=10% Similarity=0.018 Sum_probs=307.6
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCc
Q 004480 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (750)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p 146 (750)
|.. +.....-+-...+.|+++.|+..|+++++. +|.....+. .++..+...|+.++|+..+++... |
T Consensus 31 p~~-~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~------dll~l~~~~G~~~~A~~~~eka~~----p 97 (822)
T PRK14574 31 PAM-ADTQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD------DWLQIAGWAGRDQEVIDVYERYQS----S 97 (822)
T ss_pred ccc-hhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH------HHHHHHHHcCCcHHHHHHHHHhcc----C
Confidence 443 334445556677899999999999999998 555321111 223336677999999999999983 2
Q ss_pred cccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCC-Cc--ch
Q 004480 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-AD--IL 223 (750)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~--~~ 223 (750)
++. .+..+...+..+...|++++|+++|+++++.. |++...+..++..+...++.++|++.++.+.+ ++ ..
T Consensus 98 ~n~----~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~ 171 (822)
T PRK14574 98 MNI----SSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN 171 (822)
T ss_pred CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence 222 12222222334444899999999999999866 88888888888888999999999998877522 22 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcC
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 303 (750)
+..++..+...++..+|+..++++.+..+ -+...+..+..++.+.|-...|+++..+-+ +.++=......
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l--- 241 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL--- 241 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH---
Confidence 33344444445666669999999988542 356777888888888888888887766533 21111111100
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCh---HHHHHHHHHHHHhhhcCCCccCHHHH----HHHHHHHHhc
Q 004480 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT---VLAQEIYGEVKHLEAKGVLKLDVFTY----STIVKVFADA 376 (750)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~g~~~~~~~~~----~~li~~~~~~ 376 (750)
..+.+ -++++.+..++.. ...++ +.|+.-++.+.... +..++....| .-.+-++...
T Consensus 242 ~~~~~----a~~vr~a~~~~~~----------~~~r~~~~d~ala~~~~l~~~~--~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 242 ERDAA----AEQVRMAVLPTRS----------ETERFDIADKALADYQNLLTRW--GKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HHHHH----HHHHhhccccccc----------chhhHHHHHHHHHHHHHHHhhc--cCCCccchHHHHHHHHHHHHHHHh
Confidence 00111 1112111111110 11122 33444444443321 1122222222 2345678899
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHhCChHH
Q 004480 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-----CEPNSQCCNILLQACVEACQFDR 451 (750)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~ 451 (750)
|++.++++.|+.|...|.+....+-.++.++|...+++++|..+++.+.... ..++......|.-+|...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 9999999999999998876567788899999999999999999999997753 12344446788999999999999
Q ss_pred HHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHH---HHHHHHHhc
Q 004480 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN---ILMKACCTD 528 (750)
Q Consensus 452 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~li~~~~~~ 528 (750)
|..+++++..... . ....+.+ + ...-.||-..+- +...++.++
T Consensus 386 A~~~l~~~~~~~p-~-~~~~~~~-------------------~-------------~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 386 AYQFAVNYSEQTP-Y-QVGVYGL-------------------P-------------GKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHHHHHHHHhcCC-c-EEeccCC-------------------C-------------CCCCCccHHHHHHHHHHHHHHcCC
Confidence 9999999986321 0 0000000 0 000134444443 333456678
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004480 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFE 607 (750)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 607 (750)
+.+|++.++++.... +-|......+.+.+...|++.+|++.++..... .|+ ..+......++...|++.+|..+.+
T Consensus 432 l~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 432 LPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999997753 347778888999999999999999999777654 454 5667777788888899999999998
Q ss_pred HHHHCCCCCCHH
Q 004480 608 EMKHYQIQPNLV 619 (750)
Q Consensus 608 ~m~~~g~~p~~~ 619 (750)
...+. .|+..
T Consensus 509 ~l~~~--~Pe~~ 518 (822)
T PRK14574 509 DVISR--SPEDI 518 (822)
T ss_pred HHHhh--CCCch
Confidence 88763 56554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-14 Score=157.69 Aligned_cols=376 Identities=11% Similarity=-0.041 Sum_probs=275.3
Q ss_pred cCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCC
Q 004480 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (750)
Q Consensus 65 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 144 (750)
.+|.+ ...+..++..+...|++++|+.+++++++. +|...... ..++..+...|++++|+..++++.+.
T Consensus 44 ~~~~~-a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~------~~la~~l~~~g~~~eA~~~l~~~l~~-- 112 (765)
T PRK10049 44 HMQLP-ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQ------RGLILTLADAGQYDEALVKAKQLVSG-- 112 (765)
T ss_pred hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH------HHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 35666 667899999999999999999999999998 55543332 23444578999999999999999984
Q ss_pred CccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcc--
Q 004480 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI-- 222 (750)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 222 (750)
.|+... +..+.. .+...|+.++|+..++++++.. |++...+..++..+...+..++|++.++.++..+.
T Consensus 113 ~P~~~~----~~~la~---~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~ 183 (765)
T PRK10049 113 APDKAN----LLALAY---VYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEK 183 (765)
T ss_pred CCCCHH----HHHHHH---HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHH
Confidence 565432 222322 3344899999999999999965 88888888889999999999999999887765321
Q ss_pred ------hHHHHHHHHH-----hcCCH---HHHHHHHHHHHhCC-CCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHH
Q 004480 223 ------LFCNFVREFG-----KKRDL---VSALRAYDASKKHL-SSPNMY-IC----RTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 223 ------~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~~-~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m 282 (750)
....++.... ..+++ ++|+..++.+.+.- ..|+.. .+ ...+.++...|++++|+..|+.+
T Consensus 184 ~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l 263 (765)
T PRK10049 184 RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRL 263 (765)
T ss_pred HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 1222232222 22334 77888999888541 223221 11 11133456779999999999999
Q ss_pred HhCCCC-cc-HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhc-
Q 004480 283 RSQNVT-LN-IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK- 356 (750)
Q Consensus 283 ~~~g~~-~~-~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~- 356 (750)
.+.+.. |+ ...+...+....+++++|+..|+++.+..... .......+..++...|++++|..+++.+......
T Consensus 264 l~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~ 343 (765)
T PRK10049 264 KAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPF 343 (765)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCce
Confidence 987632 33 44444555556789999999999987643111 1345666777889999999999999998863100
Q ss_pred ----C--CCccC---HHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004480 357 ----G--VLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 357 ----g--~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (750)
+ .-.|+ ...+..+...+...|++++|+++++++.... +.+...+..+...+...|++++|++.+++..+.
T Consensus 344 ~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 344 LRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred EeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0 00122 2345667778899999999999999998764 446788999999999999999999999999886
Q ss_pred CCCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHhhcc
Q 004480 428 GCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (750)
Q Consensus 428 ~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 463 (750)
.|+ ...+......+.+.|++++|..+++++....
T Consensus 423 --~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 423 --EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 454 5666677778899999999999999988754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-12 Score=142.63 Aligned_cols=420 Identities=11% Similarity=0.043 Sum_probs=304.7
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCC--CcchHHH--HHHHHHhcCCHHHHH
Q 004480 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR--ADILFCN--FVREFGKKRDLVSAL 241 (750)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--l~~~~~~~g~~~~A~ 241 (750)
.+.|++++|++.|++.++.. |.+......++..+...|+.++|+.++++.-. +...+.. ++..|...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44899999999999999855 76643333788888899999999999988632 2333333 466888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhh--cCChHHHHHHHHHHHHcC
Q 004480 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLG 319 (750)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~g 319 (750)
++|+++.+..+ -+...+..++..+...++.++|++.++.+... .|+...+..+...+ .++..+|++.++++.+..
T Consensus 123 ely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 99999998654 34667778888899999999999999999876 45666664444433 245556999999999875
Q ss_pred CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHH------HHHHHHH-----HhccC---HHHHHHH
Q 004480 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY------STIVKVF-----ADAKW---WQMALKV 385 (750)
Q Consensus 320 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~------~~li~~~-----~~~g~---~~~a~~~ 385 (750)
+-+...+..+..++.+.|-...|.++..+-+.+ +.+....+ ..+++.- ....+ .+.|+.-
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-----f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-----VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-----cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 456778888999999999999999887765432 22221111 1111110 01223 3445555
Q ss_pred HHHHHHC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 004480 386 KEDMLSA-GVTPNT-----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (750)
Q Consensus 386 ~~~m~~~-g~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (750)
++.+... +..|.. ....-.+-++.+.|+..++++.|+.+...+.+....+-..+.++|...+++++|..+|+.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 6665542 222322 2233456678899999999999999999887666778899999999999999999999998
Q ss_pred hhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH--hcHHHHHHHHH
Q 004480 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMN 537 (750)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~a~~l~~ 537 (750)
....... ....++......|..++. .++++|..+++
T Consensus 354 ~~~~~~~------------------------------------------~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~ 391 (822)
T PRK14574 354 YYSDGKT------------------------------------------FRNSDDLLDADDLYYSLNESEQLDKAYQFAV 391 (822)
T ss_pred hhccccc------------------------------------------cCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence 6542110 011344544567777776 47899999999
Q ss_pred HHHHcCC-----------CC--CHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004480 538 EMRTVGL-----------SP--NHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603 (750)
Q Consensus 538 ~m~~~~~-----------~p--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 603 (750)
.+.+... .| |-. .+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|.
T Consensus 392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 9987411 12 222 24456777889999999999999998753 337888999999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004480 604 SLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCL 641 (750)
Q Consensus 604 ~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~~~~a~ 641 (750)
+.++.... +.| +..+......++...|++.++++.+
T Consensus 471 ~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 471 QELKAVES--LAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99977765 366 4677778888888888887765533
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-13 Score=131.24 Aligned_cols=455 Identities=14% Similarity=0.103 Sum_probs=268.2
Q ss_pred hhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCc-----ch
Q 004480 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRAD-----IL 223 (750)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~-----~~ 223 (750)
.+|+++.+.+..|.......+|+..|+-+++....|+....-..++..+.+.+.+.+|+++|+.. |.-. .+
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 47888888888888788999999999999998888888777788899999999999999998774 3321 46
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------CccH
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV------------TLNI 291 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------~~~~ 291 (750)
.+++...+.+.|++++|+..|+...+. .|+..+--.|+-++..-|+.++..+.|..|..-.. .|+.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 777778899999999999999988773 48877655555556677999999999999976432 2344
Q ss_pred HHHHHHHHh-----hc-C---ChHHHHHHHHHHHHcCCCCCHhh-------------H--------HHHHHHHHHcCChH
Q 004480 292 YVFNSLMNV-----NA-H---DLKFTLEVYKNMQKLGVMADMAS-------------Y--------NILLKACCLAGNTV 341 (750)
Q Consensus 292 ~~~~~ll~~-----~~-~---~~~~a~~~~~~m~~~g~~~~~~~-------------~--------~~ll~~~~~~g~~~ 341 (750)
...+-.|.. .. . +.+.+.-.--.++..-+.|+-.. + -.-...|.+.|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 444433332 11 1 11222111111111112222100 0 01123578999999
Q ss_pred HHHHHHHHHHHhhhcCCCccCHH-HHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004480 342 LAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420 (750)
Q Consensus 342 ~A~~~~~~~~~~~~~g~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 420 (750)
.|.+++.-+.+. +.. ..+.. +-..++..+.-..++..|.++-+..+..+ .-+....+.-.+.-...|++++|.+.
T Consensus 437 ~aieilkv~~~k--dnk-~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 437 GAIEILKVFEKK--DNK-TASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred HHHHHHHHHHhc--cch-hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHH
Confidence 999999887752 110 11111 11222222223446777777777666442 22344444444444567888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCC
Q 004480 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500 (750)
Q Consensus 421 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (750)
+++.+...-.-....||+=+ .+...|++++|++.|-++..--.. ............+.++.. ..
T Consensus 513 ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~n--n~evl~qianiye~led~-------------aq 576 (840)
T KOG2003|consen 513 YKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLN--NAEVLVQIANIYELLEDP-------------AQ 576 (840)
T ss_pred HHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhhCH-------------HH
Confidence 88877654333334444433 345678888888877665421000 000000000000000000 00
Q ss_pred ccccccccCCC-CccHHHHHHHHHHHHhcHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004480 501 HYSSFDKRFSF-KPTTTTYNILMKACCTDYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577 (750)
Q Consensus 501 ~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~--~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 577 (750)
.+...|....+ +-|....+.+-.-|-+.++ +|.+.+-+--+ -++-+..|...|...|....-+++|+.+|++..-
T Consensus 577 aie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal- 654 (840)
T KOG2003|consen 577 AIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL- 654 (840)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence 01111222222 3344555555555554443 33333222111 1334566666677777777777777777777654
Q ss_pred CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004480 578 GMSPDVVAYTTAIKVCVR-SKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (750)
Q Consensus 578 g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 633 (750)
++|+..-|..||..|.+ .|++.+|+++|+...+. +.-|......|++.|...|-
T Consensus 655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 57788788777765544 67788888888777653 55577777777777666664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-11 Score=126.50 Aligned_cols=513 Identities=14% Similarity=0.097 Sum_probs=331.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccc
Q 004480 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (750)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~ 152 (750)
.....+..+..+|++++|+.++.+.++. +|..+.....++.+ |-.+|+.+++...+-.+- .+.|+..
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~I------yEqrGd~eK~l~~~llAA--HL~p~d~--- 207 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEI------YEQRGDIEKALNFWLLAA--HLNPKDY--- 207 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHH------HHHcccHHHHHHHHHHHH--hcCCCCh---
Confidence 3344455566679999999999999999 66665554444444 899999999887764443 4666543
Q ss_pred hhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCc-----ch
Q 004480 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRAD-----IL 223 (750)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~-----~~ 223 (750)
..+..+.. ...+.|.+.+|.-+|.+.++.. |.+......-...|.+.|+...|...|..+ |+.. ..
T Consensus 208 e~W~~lad---ls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 208 ELWKRLAD---LSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred HHHHHHHH---HHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 33333333 3344899999999999999866 888888888888999999999998776553 5333 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHH--------
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF-------- 294 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-------- 294 (750)
-...+..+...++-+.|.+.++.....+ -..+...++.++..+.+...++.|......+..+...+|..-|
T Consensus 283 i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 3335677778888899999998877632 2245667888899999999999999998888763322332222
Q ss_pred -------------------HHHHHh-hcCChHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004480 295 -------------------NSLMNV-NAHDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (750)
Q Consensus 295 -------------------~~ll~~-~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 352 (750)
...+.. ..+..+....+...+.+.+ ..-++..|..+..+|...|++.+|..+|..+..
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 222221 1134444555555566655 444567888999999999999999999999986
Q ss_pred hhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------
Q 004480 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML------- 425 (750)
Q Consensus 353 ~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~------- 425 (750)
.. .--+...|-.+..+|...|.+++|.+.|+..+... +-+...-..|-..+.+.|+.++|.+.+..+.
T Consensus 443 ~~----~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 443 RE----GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred Cc----cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 21 22357789999999999999999999999999863 2245556677778889999999999999854
Q ss_pred -HcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCcccc
Q 004480 426 -QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504 (750)
Q Consensus 426 -~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (750)
..+..|+........+.+.+.|+.++-...-..|.......-.. +. ..+........
T Consensus 518 e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~---------f~--~~~k~r~~~~~----------- 575 (895)
T KOG2076|consen 518 EACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYI---------FP--RNKKKRRRAIA----------- 575 (895)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---------cc--hHHHHHHHhhc-----------
Confidence 33456666777777788889999888766666665432211000 00 00000000000
Q ss_pred ccccCCCCccHHHHHHHHHHHHh--c---HHHH---HHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHH
Q 004480 505 FDKRFSFKPTTTTYNILMKACCT--D---YYRV---KALMNEMRTVGLSPNHI--SWTILIDACGGSGNVEGALQILKIM 574 (750)
Q Consensus 505 ~~~~~~~~p~~~~~~~li~~~~~--~---~~~a---~~l~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m 574 (750)
..+..-.......++.+-.+ + .+.+ ...+..-...|+.-+.. .+.-++..+++.+++.+|+.+...+
T Consensus 576 ---~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a 652 (895)
T KOG2076|consen 576 ---GTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTA 652 (895)
T ss_pred ---cccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 00001111111222222211 0 0000 01122222233333332 4566778889999999999999888
Q ss_pred HHCCC--CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC--CCC-HHHHHHHHHHHHhcCC
Q 004480 575 REDGM--SPDV---VAYTTAIKVCVRSKRLKQAFSLFEEMKHY-QI--QPN-LVTYITLLRARSRYGS 633 (750)
Q Consensus 575 ~~~g~--~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--~p~-~~t~~~li~~~~~~g~ 633 (750)
.+... .++. ..=...+.+.+..+++..|.+.++.|... +. .|. ...||..++.+.+.|+
T Consensus 653 ~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q 720 (895)
T KOG2076|consen 653 LEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQ 720 (895)
T ss_pred HhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 76421 1222 23355667778889999999999998853 21 232 3455656666666654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.3e-13 Score=126.63 Aligned_cols=344 Identities=17% Similarity=0.225 Sum_probs=253.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHh--hc--CChHHH-HHHHHHHHHcCCCCCHhhHHH
Q 004480 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NA--HDLKFT-LEVYKNMQKLGVMADMASYNI 329 (750)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~--~~~~~a-~~~~~~m~~~g~~~~~~~~~~ 329 (750)
.+.+=|.|+. ....|.+.++.-+|+.|.+.|+......-..|++. +- .+..-+ ++.|-.|.+.| ..+..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 3456777777 45678899999999999999988777666666663 22 233333 34555665555 2333444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004480 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (750)
Q Consensus 330 ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 409 (750)
+.|++.+ -+|+. .+.+..+|..||.++|+--..+.|.+++++-.....+.+..+||.+|.+-.
T Consensus 191 ------K~G~vAd--L~~E~---------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S 253 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFET---------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS 253 (625)
T ss_pred ------ccccHHH--HHHhh---------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH
Confidence 3454433 33433 345778999999999999999999999999988777889999999998754
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhccc
Q 004480 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489 (750)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (750)
-.. ..+++.+|....+.||..|+|+++.+..+.|+++.|..-+-++..
T Consensus 254 ~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~---------------------------- 301 (625)
T KOG4422|consen 254 YSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILG---------------------------- 301 (625)
T ss_pred hhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHH----------------------------
Confidence 332 378899999999999999999999999999998887665544332
Q ss_pred ccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHH---HHHHHHHHHH----HcCCCC----CHHHHHHHHHHH
Q 004480 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY---RVKALMNEMR----TVGLSP----NHISWTILIDAC 558 (750)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---~a~~l~~~m~----~~~~~p----~~~~~~~li~~~ 558 (750)
.|+..|+.|...+|..+|.-+++..+ .+..++.++. ...++| |...|...+..|
T Consensus 302 ---------------EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic 366 (625)
T KOG4422|consen 302 ---------------EMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSIC 366 (625)
T ss_pred ---------------HHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHH
Confidence 35666789999999999999987433 3555444444 233333 556788888999
Q ss_pred HcCCCHHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004480 559 GGSGNVEGALQILKIMRED----GMSPD---VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (750)
Q Consensus 559 ~~~g~~~~A~~~~~~m~~~----g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 631 (750)
.+..+.+-|.++-.-.... -+.|+ ..-|..+....|+....+.-...|+.|+-.-+-|+..+...++++..-.
T Consensus 367 ~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~ 446 (625)
T KOG4422|consen 367 SSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVA 446 (625)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhc
Confidence 9999999999987776542 13333 2346778888999999999999999999877889999999999999888
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhh
Q 004480 632 GSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEG 669 (750)
Q Consensus 632 g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 669 (750)
|+++-. -+++.+|...|-.-+......++.-+|+.
T Consensus 447 ~~~e~i---pRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 447 NRLEVI---PRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred CcchhH---HHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 887764 34777888887666655555666666653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.6e-10 Score=116.53 Aligned_cols=297 Identities=12% Similarity=0.132 Sum_probs=203.5
Q ss_pred HHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCH
Q 004480 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDL 237 (750)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~ 237 (750)
+..+.-.|+.++|..++.+++... |.....|..|+..|-+.|+..++...+-. -|.+...|..+.....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 333333699999999999999866 88999999999999999999999887544 377779999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc------CChHHHHHH
Q 004480 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------HDLKFTLEV 311 (750)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~------~~~~~a~~~ 311 (750)
+.|.-.|.+.++..+ ++...+-.-...|-+.|+...|..-|.++.....+.|..-+..++...+ ++.+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999998654 4444555556678899999999999999998755444444444444321 344777777
Q ss_pred HHHHHHc-CCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhh----------------------hcC-CCccCHHHHH
Q 004480 312 YKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE----------------------AKG-VLKLDVFTYS 367 (750)
Q Consensus 312 ~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----------------------~~g-~~~~~~~~~~ 367 (750)
++..... +-..+...++.++..+.+...++.|........... ..| .+.++... -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 7766552 234556678888999999999999888776665410 000 01122222 1
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004480 368 TIVKVFADAKWWQMALKVKEDMLSAG--VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (750)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 445 (750)
.++-++......+....+...+.... +.-+...|..+..+|.+.|++.+|+.+|..+......-+...|--+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 22223333333333333333344433 3334455666777777777777777777777765444455667777777777
Q ss_pred hCChHHHHHHHHHHhhc
Q 004480 446 ACQFDRAFRLFRSWTLS 462 (750)
Q Consensus 446 ~g~~~~A~~~~~~~~~~ 462 (750)
.|..+.|.+.|+.....
T Consensus 462 l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLIL 478 (895)
T ss_pred HhhHHHHHHHHHHHHhc
Confidence 77777777777766543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-08 Score=102.63 Aligned_cols=316 Identities=16% Similarity=0.101 Sum_probs=197.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 004480 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (750)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 335 (750)
+|+.-.+.|.+.+.++-|..+|...++.- +-+...|...... .-|..+....+|.+.... ++-....|-...+.+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHH
Confidence 44444444555555555555555544331 2223333333222 225566667777777664 2334455555566677
Q ss_pred HcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004480 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (750)
Q Consensus 336 ~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 415 (750)
..|++..|..++..+-+. .+.+...|.+-+........++.|..+|.+.... .|+...|.--+....-.++.+
T Consensus 596 ~agdv~~ar~il~~af~~-----~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEA-----NPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred hcCCcHHHHHHHHHHHHh-----CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHH
Confidence 778888888888887762 2335667888888888888888888888887764 567777777777777788888
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCC
Q 004480 416 QAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494 (750)
Q Consensus 416 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (750)
+|.+++++.++. -|+ ...|-.+-+.+.+.++++.|.+.|..-.+
T Consensus 669 eA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--------------------------------- 713 (913)
T KOG0495|consen 669 EALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--------------------------------- 713 (913)
T ss_pred HHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc---------------------------------
Confidence 888888888775 344 34666677778888888888877754322
Q ss_pred CccCCCccccccccCCCCccHHHHHHHHHHHH---hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 004480 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACC---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQIL 571 (750)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~---~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 571 (750)
..|+..-.-.++.-+- +..-+|..+++.....+. -+...|-..|.+=.+.|+.+.|..++
T Consensus 714 ----------------~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 714 ----------------KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred ----------------cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 2444444444433332 245677777777776542 35667777788888888888887777
Q ss_pred HHHHHC----C-------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 004480 572 KIMRED----G-------------------------MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTY 621 (750)
Q Consensus 572 ~~m~~~----g-------------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~ 621 (750)
.+..+. | +.-|....-.+...|....++++|.+.|.+.++. .| +-.+|
T Consensus 777 akALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~w 854 (913)
T KOG0495|consen 777 AKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAW 854 (913)
T ss_pred HHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHH
Confidence 766542 0 1124444445555556666666666666666653 33 34556
Q ss_pred HHHHHHHHhcCCHHH
Q 004480 622 ITLLRARSRYGSLHE 636 (750)
Q Consensus 622 ~~li~~~~~~g~~~~ 636 (750)
.-+...+.++|.-++
T Consensus 855 a~fykfel~hG~eed 869 (913)
T KOG0495|consen 855 AWFYKFELRHGTEED 869 (913)
T ss_pred HHHHHHHHHhCCHHH
Confidence 666666666665433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-10 Score=120.68 Aligned_cols=283 Identities=10% Similarity=-0.060 Sum_probs=210.4
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcc-hHHHHHHHHHhcCCHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADI-LFCNFVREFGKKRDLVSALR 242 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~-~~~~l~~~~~~~g~~~~A~~ 242 (750)
.|+++.|.+.+.+..+.. |.....+...+.+..+.|+++.|.+++... |.+.. +.......+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 799999999999877644 555555666678888999999999998773 44432 44446888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcC-----ChHHHHHHHHHHHH
Q 004480 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----DLKFTLEVYKNMQK 317 (750)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-----~~~~a~~~~~~m~~ 317 (750)
.++.+.+..+ -+..++..+...+.+.|++++|.+.+..+.+.++.+.......-..+..+ ..+.+.+.+..+.+
T Consensus 175 ~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999998653 35678889999999999999999999999998765333221111122211 11222334444444
Q ss_pred cC---CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHH---HHHHHHHHHhccCHHHHHHHHHHHHH
Q 004480 318 LG---VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQMALKVKEDMLS 391 (750)
Q Consensus 318 ~g---~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (750)
.. .+.++..+..+...+...|+.++|.+++++..+ ..||... ...........++.+.+.+.++...+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~------~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK------KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh------hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 32 123788888999999999999999999999887 2345442 12222233456788899999988876
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 004480 392 AGVTPNT--ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (750)
Q Consensus 392 ~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (750)
.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 52 2234 56678899999999999999999964444458999999999999999999999999999754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-10 Score=108.13 Aligned_cols=272 Identities=13% Similarity=0.059 Sum_probs=171.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCccHH--HHHHHHHhhc--CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCh
Q 004480 265 VCGICGDYMKSRAIYEDLRSQNVTLNIY--VFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340 (750)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 340 (750)
.|.+.|+++.|++++.-+.+..-+.-.. +--+.+.... +++.+|.+.-+...... .-|+.....-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 3677888888888887776543222111 1122333332 36666766666554332 22333333333444567888
Q ss_pred HHHHHHHHHHHHhhhcCCCccCHHHHHHH---HHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004480 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTI---VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417 (750)
Q Consensus 341 ~~A~~~~~~~~~~~~~g~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 417 (750)
++|.+.|++... .|...-.+| .-.+-..|++++|++.|-++..- +.-+..+...+.+.|.-..+..+|
T Consensus 507 dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 507 DKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred HHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHH
Confidence 888888887753 233332222 22456778888888888776543 233566677777788888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCcc
Q 004480 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFV 497 (750)
Q Consensus 418 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (750)
++++.+.... ++-|+.+.+-|.+.|-+.|+-..|++.+-.--..
T Consensus 578 ie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry----------------------------------- 621 (840)
T KOG2003|consen 578 IELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY----------------------------------- 621 (840)
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-----------------------------------
Confidence 8888776543 4557788888888888888888888776431110
Q ss_pred CCCccccccccCCCCccHHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHHHH
Q 004480 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC-GGSGNVEGALQILKIM 574 (750)
Q Consensus 498 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m 574 (750)
++.|..+..-+-.-|.. =.+++...|++..- +.|+..-|-.+|..| .+.|++.+|..+++..
T Consensus 622 -------------fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 622 -------------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred -------------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 23344444444444443 35778888877665 578888888877555 4678888898888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCC
Q 004480 575 REDGMSPDVVAYTTAIKVCVRSKR 598 (750)
Q Consensus 575 ~~~g~~p~~~~~~~li~~~~~~g~ 598 (750)
.++ ++-|.....-|+..+...|.
T Consensus 687 hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 687 HRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHh-CccchHHHHHHHHHhccccc
Confidence 764 45577777777777776664
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-10 Score=118.05 Aligned_cols=220 Identities=14% Similarity=0.036 Sum_probs=163.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccH-------HHHHHHHHh
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-------YVFNSLMNV 300 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~ll~~ 300 (750)
...+...|+++.|...++++.+..+ -+...+..+...|.+.|++++|.+++..+.+.+..++. ..|..++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 5567777888888888888877542 35667777788888888888888888888877654322 122233332
Q ss_pred h--cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccC
Q 004480 301 N--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (750)
Q Consensus 301 ~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~ 378 (750)
. ..+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+ .++|... .++.+.+..++
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~------~~~~~~l--~~l~~~l~~~~ 309 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK------RQYDERL--VLLIPRLKTNN 309 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCHHH--HHHHhhccCCC
Confidence 1 12444555566655432 245788888899999999999999999988775 2445422 23444556699
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
.+++.+..+...+.. +-|...+..+...+.+.+++++|.+.|+...+. .|+..+|..+..++.+.|+.++|.+++++
T Consensus 310 ~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 310 PEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999988774 336777889999999999999999999999986 79999999999999999999999999987
Q ss_pred Hh
Q 004480 459 WT 460 (750)
Q Consensus 459 ~~ 460 (750)
-.
T Consensus 387 ~l 388 (398)
T PRK10747 387 GL 388 (398)
T ss_pred HH
Confidence 54
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-08 Score=98.85 Aligned_cols=470 Identities=14% Similarity=0.134 Sum_probs=273.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
+..|...++.+.++|++..-...|+.++..= |-.- + ..++.-.+.-.-..|-++.++.+|++-++ +.|...
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraL--pvtq-H---~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~~- 172 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRAL--PVTQ-H---DRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEAR- 172 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--chHh-h---ccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHHH-
Confidence 5567778889999999999999999998773 2110 0 01111112223467778899999999997 566431
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCC-----CcccccHHHHHHHHHcCCChH------HHHHH-hhhCC
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-----VKELDEEFRIVQLCVNKPDVN------LAIRY-ACIVP 218 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~------~A~~~-~~~~~ 218 (750)
...+..|. ..+++++|.+.+...+..... +.+...|..+-....+.-+.- .-.+- ..+++
T Consensus 173 -eeyie~L~-------~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft 244 (835)
T KOG2047|consen 173 -EEYIEYLA-------KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT 244 (835)
T ss_pred -HHHHHHHH-------hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc
Confidence 22333333 389999999999887643211 445556666655555433322 22211 12223
Q ss_pred CC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------------CHHHH
Q 004480 219 RA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----------------------DYMKS 275 (750)
Q Consensus 219 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A 275 (750)
+. ...|++|.+.|.+.|.++.|..+|++....- ..+.-|+.+.++|.+.. +++-.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 22 3789999999999999999999999987632 34444555555554321 12223
Q ss_pred HHHHHHHHhCCC-----------CccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCC------HhhHHHHHHHHHHcC
Q 004480 276 RAIYEDLRSQNV-----------TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD------MASYNILLKACCLAG 338 (750)
Q Consensus 276 ~~~~~~m~~~g~-----------~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~ll~~~~~~g 338 (750)
..-|+.+...+. +-++..|..-+..+.++..+-...|.+..+. +.|. ...|..+.+.|-..|
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcC
Confidence 334444433321 2244556666666666777777778777664 2222 235677888888999
Q ss_pred ChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCC-----------------CHHHH
Q 004480 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-----------------NTITW 401 (750)
Q Consensus 339 ~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------------~~~~~ 401 (750)
+++.|..+|++..+..-.+ +..=..+|......=.+..+++.|+++.+......-.| +...|
T Consensus 402 ~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred cHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999999999876511000 00002334444444456677888888777665321111 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhh
Q 004480 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481 (750)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (750)
...++.--..|-++....+++++.+..+--...+.|-.+ -+....-++++.+.|++-...
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm-fLEeh~yfeesFk~YErgI~L------------------- 540 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM-FLEEHKYFEESFKAYERGISL------------------- 540 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhhHHHHHHHHHHHcCCcc-------------------
Confidence 555666666777888888888888765432222222111 223455677788877652211
Q ss_pred hhhhhcccccCCCCccCCCccccccccCCCCccHH-HHHHHHHHH----Hh-cHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004480 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT-TYNILMKAC----CT-DYYRVKALMNEMRTVGLSPNHISWTILI 555 (750)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~----~~-~~~~a~~l~~~m~~~~~~p~~~~~~~li 555 (750)
+. -|++. .|+.-+.-+ ++ .+++|..+|++..+ |++|...-+-.|+
T Consensus 541 ---------------------------Fk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 541 ---------------------------FK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLL 591 (835)
T ss_pred ---------------------------CC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 11 23333 455555444 33 68999999999999 7776554332222
Q ss_pred HH--HHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 556 DA--CGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 556 ~~--~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
.+ =-+.|-...|+.++++.... +++. ...||..|.--...=-+.....+|++.++
T Consensus 592 YA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 592 YAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 22 23458888899999887543 3333 33566666533322223334444444443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-09 Score=112.64 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004480 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEE 608 (750)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (750)
.+++.+..+...+.. +-|...+..+...|.+.|++++|.+.|+...+. .|+...|..+...+.+.|+.++|.+++++
T Consensus 310 ~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 310 PEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444443331 123344555666666666666666666666653 56666666666666666666666666665
Q ss_pred HH
Q 004480 609 MK 610 (750)
Q Consensus 609 m~ 610 (750)
-.
T Consensus 387 ~l 388 (398)
T PRK10747 387 GL 388 (398)
T ss_pred HH
Confidence 43
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-07 Score=92.35 Aligned_cols=398 Identities=11% Similarity=0.059 Sum_probs=269.2
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004480 175 VGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254 (750)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 254 (750)
..++++.++.- |+++..|.. .....+++.|.-++.+...--....-|.-+|++..-|+.|.++++...+. ++-
T Consensus 366 ~RVlRKALe~i--P~sv~LWKa----AVelE~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~-ipt 438 (913)
T KOG0495|consen 366 KRVLRKALEHI--PRSVRLWKA----AVELEEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREI-IPT 438 (913)
T ss_pred HHHHHHHHHhC--CchHHHHHH----HHhccChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhh-CCC
Confidence 34455555433 555444432 23334455555554443211112223444566777888899999888774 444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCccHHHHHHHHHhh--cCChHHHHHHHHHHHHcCCCC--CHhh
Q 004480 255 NMYICRTIIDVCGICGDYMKSRAIYEDL----RSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMA--DMAS 326 (750)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~g~~~--~~~~ 326 (750)
+..+|-+-...=-.+|+.+....++++- ...|+..+..-|-.--..+ +|..-.+..+....+.-|+.- --.|
T Consensus 439 d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~t 518 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKST 518 (913)
T ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhH
Confidence 6667766666667788888888887654 3557777766665444432 366666777777777766543 2457
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004480 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (750)
Q Consensus 327 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (750)
|+.-...|.+.+.++-|..+|....+. ++-+...|......=-..|..++...+|++.... ++-....|-....
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqv-----fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ak 592 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQV-----FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAK 592 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhh-----ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHH
Confidence 888888888999999999999888763 4456667888777777788899999999998876 3335566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhh
Q 004480 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486 (750)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (750)
.+...|++..|..++....+.. +-+...|-.-+..-..+.++++|..+|.+....
T Consensus 593 e~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~------------------------ 647 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI------------------------ 647 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc------------------------
Confidence 7888899999999999888764 336778888888888899999999999876543
Q ss_pred cccccCCCCccCCCccccccccCCCCccHHHHH--HHHHHHHhcHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCC
Q 004480 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLSPNH-ISWTILIDACGGSGN 563 (750)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~li~~~~~~~~~a~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~ 563 (750)
.|+...|. .-+.-|..+.++|.+++++..+. -|+. ..|-.+...+-+.++
T Consensus 648 -------------------------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 648 -------------------------SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred -------------------------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHH
Confidence 34444443 33334556778888888877774 3443 466677777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004480 564 VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQ 639 (750)
Q Consensus 564 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~ 639 (750)
++.|...|..=.+. ++-.+..|-.|.+.=-+.|.+-+|..++++..-.+ .-|...|-..|+.=.|.|+.+.|+.
T Consensus 701 ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 701 IEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 77777777655442 22235566666666677778888888888876542 2367778888888888888776554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.2e-11 Score=120.23 Aligned_cols=200 Identities=13% Similarity=0.147 Sum_probs=131.1
Q ss_pred hhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHH
Q 004480 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293 (750)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 293 (750)
...|..+.+|+.+...|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+ ..|...
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rh 488 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRH 488 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchh
Confidence 33455567777777777777777777777777766 334 45677777776777777777777777654 334455
Q ss_pred HHHHHH---h--hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHH
Q 004480 294 FNSLMN---V--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (750)
Q Consensus 294 ~~~ll~---~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (750)
||+.-- . ..++++.|+--|....+-+ +-+.+....+...+.+.|+.|+|++++++...+. +.|+..--.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn~l~~~~ 562 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKNPLCKYH 562 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCCchhHHH
Confidence 554433 1 2245666666666665543 3455566667777778888888888888877642 234444444
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004480 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (750)
.+..+...+++++|+..++++.+. ++-+...|..+...|.+.|+.+.|+.-|..+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 555677778888888888888775 2224566777777888888888888777777654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=128.07 Aligned_cols=156 Identities=15% Similarity=0.092 Sum_probs=26.2
Q ss_pred HhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHH
Q 004480 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (750)
Q Consensus 121 ~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (750)
..+.+.|++++|++++.+.......|+... .+..+...+.. .+++++|++.++++...+ +.....+..++..
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~---~~~~~a~La~~---~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l 87 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPE---YWRLLADLAWS---LGDYDEAIEAYEKLLASD--KANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc---ccccccccccc---cccccccccccccccccc--ccccccccccccc
Confidence 336688899999998866554322344442 22233322222 688888888888887755 3344444444444
Q ss_pred HHcCCChHHHHHHhhhC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 004480 201 CVNKPDVNLAIRYACIV---PRADILFCNFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSR 276 (750)
Q Consensus 201 ~~~~~~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~ 276 (750)
...+++++|.+++... .++...+...+..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|+
T Consensus 88 -~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 88 -LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred -cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4555555555544332 1223334444455555555555555555544322 1234444555555555555555555
Q ss_pred HHHHHHHhC
Q 004480 277 AIYEDLRSQ 285 (750)
Q Consensus 277 ~~~~~m~~~ 285 (750)
+.|++..+.
T Consensus 167 ~~~~~al~~ 175 (280)
T PF13429_consen 167 RDYRKALEL 175 (280)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-12 Score=127.23 Aligned_cols=250 Identities=16% Similarity=0.129 Sum_probs=99.0
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCC----CCcchHHHHHHHHHhcCCHHHHHH
Q 004480 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP----RADILFCNFVREFGKKRDLVSALR 242 (750)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~ 242 (750)
..|++++|++++++.......|++...|..++..+...++.+.|+..++.+. .+...+..++.. ...+++++|.+
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 3678888888775544332235555555545555545555555555544431 112233333333 34455555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHc-CCC
Q 004480 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL-GVM 321 (750)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~-g~~ 321 (750)
++....+.. ++...+...+..+.+.++++++.++++ .+... ..+
T Consensus 99 ~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~---------------------------------~~~~~~~~~ 143 (280)
T PF13429_consen 99 LAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLE---------------------------------KLEELPAAP 143 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHH---------------------------------HHHH-T---
T ss_pred ccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHH---------------------------------HHHhccCCC
Confidence 444433221 233334444444444555555544444 44322 134
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCcc-CHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHH
Q 004480 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (750)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 400 (750)
.+...|..+...+.+.|+.++|.+.+++..+. .| |....+.++..+...|+.+++..++....... +.|...
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~ 216 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDL 216 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHH
Confidence 57777888888888999999999999998873 45 46778888888999999998888888877653 345566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 004480 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (750)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (750)
+..+..+|...|+.++|+..|++..+.. +.|..+...+.+++.+.|+.++|.++.++..
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 7888889999999999999999988763 5577888888889999999999998887654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-09 Score=113.69 Aligned_cols=284 Identities=10% Similarity=0.007 Sum_probs=145.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHH
Q 004480 233 KKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV 311 (750)
Q Consensus 233 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~ 311 (750)
..|+++.|.+.+.+..+.. |+ ...+-....+..+.|+++.|.+.|.+..+..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~------------------------- 148 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA------------------------- 148 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------
Confidence 4566666666666655432 22 2223333445555666666666666654431
Q ss_pred HHHHHHcCCCCCH--hhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 004480 312 YKNMQKLGVMADM--ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (750)
Q Consensus 312 ~~~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 389 (750)
|+. ...-.....+...|+++.|...++.+.+. -+-+...+..+...+...|++++|.+.+..+
T Consensus 149 ----------p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 149 ----------GNDNILVEIARTRILLAQNELHAARHGVDKLLEM-----APRHKEVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred ----------CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222 12222344455555666666655555541 1223444555555556666666666666665
Q ss_pred HHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q 004480 390 LSAGVTPNTITWS-SLINAC---ANAGLVEQAMHLFEEMLQAG---CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (750)
Q Consensus 390 ~~~g~~p~~~~~~-~li~~~---~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 462 (750)
.+.++. +...+. .-..++ ...+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.
T Consensus 214 ~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 214 AKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 555432 222221 111111 11122222222333333321 0125555666666666666666666666665543
Q ss_pred ccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHH-HHHHHHH----HhcHHHHHHHHH
Q 004480 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY-NILMKAC----CTDYYRVKALMN 537 (750)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~li~~~----~~~~~~a~~l~~ 537 (750)
. ||.... ..++..+ .++.+.+.+.++
T Consensus 293 ~-------------------------------------------------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 293 L-------------------------------------------------GDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred C-------------------------------------------------CCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 2 111100 0011111 123345555555
Q ss_pred HHHHcCCCCC-H--HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004480 538 EMRTVGLSPN-H--ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (750)
Q Consensus 538 ~m~~~~~~p~-~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (750)
...+. .|+ . ....++.+.|.+.|++++|.+.|+........||...+..+...+.+.|+.++|.++|++..
T Consensus 324 ~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 324 KQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55543 233 3 45567788888888888888888854333347888778888888888888888888888753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8e-09 Score=101.34 Aligned_cols=361 Identities=11% Similarity=0.010 Sum_probs=212.4
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC-hhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
...+...+..+-++|.|++|+..+.+++...++ |..| ++....|...|+|+++.+.-.++++ +.|+
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFY---------sNraAcY~~lgd~~~Vied~TkALE--l~P~-- 181 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFY---------SNRAACYESLGDWEKVIEDCTKALE--LNPD-- 181 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhh---------hhHHHHHHHHhhHHHHHHHHHHHhh--cCcH--
Confidence 445666778888999999999999999999665 4433 3444458899999999999999887 6663
Q ss_pred ccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004480 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (750)
..-+|.+-+.+.-..|++++|+.=+.-..-.+...+. .....+-+.+-..+. ..+.+-+..-.+......+.|.
T Consensus 182 ----Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~-s~~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~ 255 (606)
T KOG0547|consen 182 ----YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNA-SIEPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIA 255 (606)
T ss_pred ----HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccc-hhHHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHH
Confidence 3456666556655678888776433322211111111 101111111111111 1122222210011111222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCC-CCcc-------------HHHH
Q 004480 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQN-VTLN-------------IYVF 294 (750)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g-~~~~-------------~~~~ 294 (750)
.|...=..+-- ..+...+.+.|...-..+-..+... ..+..|...+.+-.... ..++ ...+
T Consensus 256 syf~sF~~~~~----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 256 SYFGSFHADPK----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred HHHhhcccccc----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 22211000000 0000000001111111111111110 12333333332211100 0011 1122
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHH
Q 004480 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (750)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~ 374 (750)
...+....|+...+.+-|+..++.... +...|--+..+|....+.++-...|.....+. +-|..+|..-...+.
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-----p~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-----PENPDVYYHRGQMRF 405 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-----CCCCchhHhHHHHHH
Confidence 233334568888899999998876432 22237778888999999999999999988742 345667877777788
Q ss_pred hccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHH
Q 004480 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (750)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 454 (750)
-.+++++|..=|++.+..... ++..|..+.-+.-+.+++++++..|++..++ ++-.+..|+.....+...++++.|.+
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 889999999999999987533 6777777777778899999999999999886 45577889999999999999999999
Q ss_pred HHHHHhhc
Q 004480 455 LFRSWTLS 462 (750)
Q Consensus 455 ~~~~~~~~ 462 (750)
.|+.....
T Consensus 484 ~YD~ai~L 491 (606)
T KOG0547|consen 484 QYDKAIEL 491 (606)
T ss_pred HHHHHHhh
Confidence 99886643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-09 Score=102.15 Aligned_cols=333 Identities=12% Similarity=0.041 Sum_probs=200.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHH-----------------------HHHhhhhcCchh
Q 004480 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVAS-----------------------GIVKSIREGRID 130 (750)
Q Consensus 74 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----------------------~~~~~~~~g~~~ 130 (750)
+...+-.+-+.|....|+..|...+.. -|-.|..++.+.-+.. +..++....+.+
T Consensus 167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~ 244 (559)
T KOG1155|consen 167 LYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHE 244 (559)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHH
Confidence 334455666778888888888777765 5666665544332211 112223333445
Q ss_pred HHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCC-CCcccccHHHHHHHHHcCCChH-
Q 004480 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL-PVKELDEEFRIVQLCVNKPDVN- 208 (750)
Q Consensus 131 ~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~- 208 (750)
++.+-++.....|...+. .+-+.+.+ ..-.+.++++|+.+|+++++... ..++..+++.++.+-....++.
T Consensus 245 e~~~k~e~l~~~gf~~~~-----~i~~~~A~--~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPNSM-----YIKTQIAA--ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHhccCCccH-----HHHHHHHH--HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 555555555554433222 11122211 12235677777777777766531 1234444444443332222221
Q ss_pred HHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004480 209 LAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (750)
Q Consensus 209 ~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (750)
.|..++..-.=.+.+.+.+.+.|+-+++.++|+..|++..+.++ ....+|+.+..-|....+...|++-|+..++-.
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-- 394 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-- 394 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--
Confidence 23333333233345666666677777777777777777766332 234466666666666666666666666655432
Q ss_pred ccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHH
Q 004480 289 LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (750)
Q Consensus 289 ~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (750)
+.|-..|-.|..+|.-.+...=|+-.|++.... -+-|...|.+
T Consensus 395 --------------------------------p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-----kPnDsRlw~a 437 (559)
T KOG1155|consen 395 --------------------------------PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-----KPNDSRLWVA 437 (559)
T ss_pred --------------------------------chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-----CCCchHHHHH
Confidence 456777778888888888888888888888763 2456788889
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCC-CHHHHHHHHHH
Q 004480 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA----G-CEP-NSQCCNILLQA 442 (750)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~p-~~~~~~~ll~~ 442 (750)
|..+|.+.++.++|++.|......|-. +...+..|.+.|-+.++.++|...|.+-.+. | +.| .....--|..-
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY 516 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 999999999999999998888876633 5577888888888888888888888776652 3 222 12222224445
Q ss_pred HHHhCChHHHHHHH
Q 004480 443 CVEACQFDRAFRLF 456 (750)
Q Consensus 443 ~~~~g~~~~A~~~~ 456 (750)
+.+.+++++|...-
T Consensus 517 f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 517 FKKMKDFDEASYYA 530 (559)
T ss_pred HHhhcchHHHHHHH
Confidence 66677777775544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-10 Score=116.35 Aligned_cols=282 Identities=13% Similarity=0.114 Sum_probs=189.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CccHHHHHHHHHhhcCChHHHHHHH-
Q 004480 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--TLNIYVFNSLMNVNAHDLKFTLEVY- 312 (750)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~a~~~~- 312 (750)
+..+|...|..+.+. +.-..++...+..+|...+++++|.++|+.+.+... .-+..+|.+.|.-....++ +..+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~--Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA--LSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH--HHHHH
Confidence 567899999885553 323457788888999999999999999999886532 2356677777764443222 2112
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCcc-CHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 004480 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (750)
Q Consensus 313 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (750)
+++.+.. +-.+.+|.++.+.|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+.
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ------LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc------cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 2222221 44678888888888888888888888888877 445 677888888888888888888888888775
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCC
Q 004480 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471 (750)
Q Consensus 392 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 471 (750)
.... +-..|.-+.-.|.+.++++.|+-.|++..+-+ +-+.+....+...+.+.|+.|+|++++++......
T Consensus 484 ~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~------- 554 (638)
T KOG1126|consen 484 VDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP------- 554 (638)
T ss_pred CCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-------
Confidence 4211 23344456677888888888888888887653 34666677777788888888888888887553321
Q ss_pred CCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCCH-HH
Q 004480 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNH-IS 550 (750)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~~~p~~-~~ 550 (750)
..|-.....+.+.....+.++|+..++++++ +.|+. ..
T Consensus 555 ---------------------------------------kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v 593 (638)
T KOG1126|consen 555 ---------------------------------------KNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSV 593 (638)
T ss_pred ---------------------------------------CCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHH
Confidence 1222333333333344566666666666666 34443 34
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004480 551 WTILIDACGGSGNVEGALQILKIMRED 577 (750)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 577 (750)
|-.+...|-+.|+.+.|+.-|..|.+.
T Consensus 594 ~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 594 FALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 555566666666666666666666654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-07 Score=92.96 Aligned_cols=416 Identities=12% Similarity=0.105 Sum_probs=298.9
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRA 243 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~ 243 (750)
++++..|.++|++.+... ..+...|..-+..-.+...+..|.-++.. +|.....|...+.+=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 678889999999988754 56677777777777788888888887766 577778888888888888999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHh--hcCChHHHHHHHHHHHHc-CC
Q 004480 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL-GV 320 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~-g~ 320 (750)
|++-.+ ..|+..+|++.|+.=.+...++.|..+|+..+-. .|++.+|--..+. ..|....+..+|....+. |-
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 998876 6799999999999988999999999999998754 5888888766664 457888888998887664 21
Q ss_pred -CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccC--HHHHHHHHHHHHhccC---HHHHHH-----HHHHH
Q 004480 321 -MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKW---WQMALK-----VKEDM 389 (750)
Q Consensus 321 -~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~--~~~~~~li~~~~~~g~---~~~a~~-----~~~~m 389 (750)
..+...+.+....=.++..++.|.-+|+-.... ++.+ ...|..+...=-+.|+ .++++- -++.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-----~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH-----IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 112223333333334567788888888877653 2223 3344444443334444 344432 23344
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHH-----HH---HHhCChHHHHHHHHHH
Q 004480 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS--QCCNILLQ-----AC---VEACQFDRAFRLFRSW 459 (750)
Q Consensus 390 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~-----~~---~~~g~~~~A~~~~~~~ 459 (750)
.+.+ +-|-.+|-..++.-...|+.+...++|++.... ++|-. ..|.-.|- +| ....+.+.+.++|+..
T Consensus 315 v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 315 VSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4443 447778888888888889999999999999875 45522 12222221 11 2457888888888876
Q ss_pred hhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH------hcHHHHH
Q 004480 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC------TDYYRVK 533 (750)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~------~~~~~a~ 533 (750)
.+. ++....|+.-+--.|+ .++..|.
T Consensus 393 l~l------------------------------------------------IPHkkFtFaKiWlmyA~feIRq~~l~~AR 424 (677)
T KOG1915|consen 393 LDL------------------------------------------------IPHKKFTFAKIWLMYAQFEIRQLNLTGAR 424 (677)
T ss_pred Hhh------------------------------------------------cCcccchHHHHHHHHHHHHHHHcccHHHH
Confidence 652 2445566666555554 2677888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004480 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (750)
Q Consensus 534 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (750)
+++...+ |..|-..+|...|..=.+.+.+|.+..++++.++.+. -|..+|.-....=-..|+.+.|..+|.-.++..
T Consensus 425 kiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 425 KILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 8887765 4689999999999999999999999999999998642 267788888877778899999999999998643
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Q 004480 614 -IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (750)
Q Consensus 614 -~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~ 650 (750)
+......|.+.|+.=...|..+. +..+|+++++.
T Consensus 502 ~ldmpellwkaYIdFEi~~~E~ek---aR~LYerlL~r 536 (677)
T KOG1915|consen 502 ALDMPELLWKAYIDFEIEEGEFEK---ARALYERLLDR 536 (677)
T ss_pred ccccHHHHHHHhhhhhhhcchHHH---HHHHHHHHHHh
Confidence 22345667777777667776554 66788888864
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-08 Score=96.79 Aligned_cols=282 Identities=11% Similarity=0.098 Sum_probs=203.5
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHH--HHHHHHHhcCCHHHHHHHH
Q 004480 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC--NFVREFGKKRDLVSALRAY 244 (750)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~ 244 (750)
+.|....|++.|...+... |-....|..|...+. +.+.+..+....|.+..... -+..+|....+.++++.-.
T Consensus 176 ~~~~~s~A~~sfv~~v~~~--P~~W~AWleL~~lit---~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~ 250 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRY--PWFWSAWLELSELIT---DIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKK 250 (559)
T ss_pred hhchHHHHHHHHHHHHhcC--CcchHHHHHHHHhhc---hHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888877644 767667766665553 34444444444454322222 2456677777888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--ccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC
Q 004480 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA 322 (750)
Q Consensus 245 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~ 322 (750)
+.....|..-+...-+....+.-...|+++|+.+|+++.+..+- -|..+|..++.+....-. +..+.+-...=-+-
T Consensus 251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk--Ls~LA~~v~~idKy 328 (559)
T KOG1155|consen 251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK--LSYLAQNVSNIDKY 328 (559)
T ss_pred HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH--HHHHHHHHHHhccC
Confidence 88888887555554444445556778999999999999887322 467788888776543221 22222211111134
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004480 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (750)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (750)
.+.|+..+.+-|.-.++.++|...|+...++. +.....|+.|..-|....+...|.+-++..++-. +.|-..|-
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-----p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWY 402 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-----PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWY 402 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-----cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHh
Confidence 56678788888888899999999999988731 2345678889999999999999999999998875 44888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q 004480 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (750)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 462 (750)
.|.++|.-.+...-|+-.|++..+.. +-|...|.+|.++|.+.++.++|.+.|......
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999999999999999988753 448889999999999999999999999876543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-12 Score=89.38 Aligned_cols=49 Identities=37% Similarity=0.613 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004480 581 PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS 629 (750)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 629 (750)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-08 Score=99.22 Aligned_cols=396 Identities=12% Similarity=0.037 Sum_probs=235.6
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (750)
+.+.|.|++|+++|.++++ +.|+.. ..|+-.. +.|...|++++.++--.+.++.. |+-+-.+..-.+++.
T Consensus 125 ~f~~kkY~eAIkyY~~AI~--l~p~ep---iFYsNra---AcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIE--LCPDEP---IFYSNRA---ACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred hhhcccHHHHHHHHHHHHh--cCCCCc---hhhhhHH---HHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 6699999999999999998 567632 2333222 23444799999999888888744 777666777777788
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHH--------H-HHhCCC--CCCHHHHHHHHHHHHhc--
Q 004480 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD--------A-SKKHLS--SPNMYICRTIIDVCGIC-- 269 (750)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~-~~~~~~--~~~~~~~~~li~~~~~~-- 269 (750)
..|++++|+-- .+..++...+....-.-.+.+++. + +.+.+. -|+....++....+...
T Consensus 195 ~lg~~~eal~D--------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 195 QLGKFDEALFD--------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hhccHHHHHHh--------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 88888887542 122222222222222222222222 1 111221 14433333333332111
Q ss_pred ------C-----CHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHH---cCCCCC---------Hhh
Q 004480 270 ------G-----DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK---LGVMAD---------MAS 326 (750)
Q Consensus 270 ------g-----~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~---~g~~~~---------~~~ 326 (750)
+ ...++.+.+..-... .+..+...+.+-.. .....+ ..+
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e------------------~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~a 328 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEE------------------GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEA 328 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCch------------------hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHH
Confidence 0 011111111111111 12222222211110 000111 112
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004480 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (750)
Q Consensus 327 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (750)
.......+.-.|+.-.|...|+....+. +.+...|--+...|....+-++..+.|++..+.+.. |..+|..-..
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~-----~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQ 402 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLD-----PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQ 402 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcC-----cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHH
Confidence 2222233445688888999999888742 223333777777899999999999999998887643 6677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhh
Q 004480 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486 (750)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (750)
.+.-.+++++|..-|++..... +-+...|-.+--+..+.+++++++..|++...+
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk------------------------ 457 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK------------------------ 457 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------
Confidence 7777888999999999887653 235556666666777888999999999886643
Q ss_pred cccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCC---------HHHHHHHHHH
Q 004480 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPN---------HISWTILIDA 557 (750)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~~~p~---------~~~~~~li~~ 557 (750)
++-.|.+.+|-.-|-.=-++++.|.+.|+..++. .|+ +.+--.++..
T Consensus 458 ----------------------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 458 ----------------------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred ----------------------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhhh
Confidence 2335555555554444456788888888887763 232 1122222222
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 558 CGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 558 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
-- .+++..|.+++++.++...+ ....|.+|...-.++|++++|+++|++-..
T Consensus 514 qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 514 QW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12 27888899988888874322 355788888888889999999999987653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-09 Score=97.35 Aligned_cols=223 Identities=12% Similarity=0.039 Sum_probs=130.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHH-----hhcCChHHHH
Q 004480 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-----VNAHDLKFTL 309 (750)
Q Consensus 235 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~-----~~~~~~~~a~ 309 (750)
.+.++|..+|-+|.+.. +.+..+.-+|.+.|.+.|..++|+++.+.+.++.-.+...-..++.. ..+|-++.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45666666666666521 12334555666666666666666666666654311111111111111 0124455555
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccC-HHHHHHHHHHHHhccCHHHHHHHHHH
Q 004480 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKED 388 (750)
Q Consensus 310 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (750)
.+|..+.+.+ ..-......|+..|....+|++|.++-+++.++.... .... ...|.-+...+....+.+.|..++.+
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~-~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT-YRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc-chhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 5555555433 2334456677788888888888888877776632111 0001 12355555566666777888888887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 389 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
..+.+.+ .+..--.+.+.....|+++.|++.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7766422 33444456667777888888888888887775444556677777788888888877777766554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-12 Score=87.86 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004480 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (750)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 595 (750)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+++|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-08 Score=106.33 Aligned_cols=530 Identities=12% Similarity=0.100 Sum_probs=272.7
Q ss_pred hccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHH
Q 004480 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (750)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (750)
+.....|+- ..|.+++..|+..|+.+.|- +|.-|........ -++++.++......++.+.+.
T Consensus 17 e~~gi~PnR--vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~-------e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 17 EISGILPNR--VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVR-------EGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred HHhcCCCch--hhHHHHHHHHcccCCCcccc-chhhhhccccccc-------chhHHHHHhcccccccccCCC-------
Confidence 334444544 88999999999999999998 7776654432111 222233333344444444333
Q ss_pred hcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHH----HH----hC-------------CCCCcccccHHHHHH
Q 004480 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEV----LE----EF-------------RLPVKELDEEFRIVQ 199 (750)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~----~~----~~-------------~~~~~~~~~~~~l~~ 199 (750)
.| ...++..+..++ ...|+..- ++..++ +. .. ...|........++.
T Consensus 80 ----ep----~aDtyt~Ll~ay---r~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~il 147 (1088)
T KOG4318|consen 80 ----EP----LADTYTNLLKAY---RIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAIL 147 (1088)
T ss_pred ----CC----chhHHHHHHHHH---HhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHH
Confidence 11 112333333322 22444332 111111 11 01 111222222334455
Q ss_pred HHHcCCChHHHHHHhhhCCCCcchHHH--HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004480 200 LCVNKPDVNLAIRYACIVPRADILFCN--FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277 (750)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 277 (750)
.....|-.+.+++.....|.....-.. +++-+.. .+....++.+......-.|+..+|.+++..-...|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 555666777777777776654321111 2222222 222333444333322124899999999999999999999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC
Q 004480 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (750)
Q Consensus 278 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g 357 (750)
++.+|++.|++.+.+-|..++-+ .++...+..+++-|.+.|+.|+..|+...+-.+.+.|....+....+.-
T Consensus 226 ll~emke~gfpir~HyFwpLl~g-~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~------- 297 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG-INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA------- 297 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc-CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh-------
Confidence 99999999999999988888877 7788889999999999999999999999888888866533322211110
Q ss_pred CCccCHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC
Q 004480 358 VLKLDVFTYSTIVKVFADAKWWQ-----MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG--CE 430 (750)
Q Consensus 358 ~~~~~~~~~~~li~~~~~~g~~~-----~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~ 430 (750)
.-.....+..+.++.....+.+ -....+.+..-.|+......|...+. ...+|.-++..++...|..-- ..
T Consensus 298 -hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s 375 (1088)
T KOG4318|consen 298 -HGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDS 375 (1088)
T ss_pred -hhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccC
Confidence 0012233444444322222222 22223333333344433344443333 233677677777766664321 12
Q ss_pred C-CHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhh-hhhhhh-hhcccccC-CCCccCCCcccccc
Q 004480 431 P-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR-ISNMEH-KDKQSITN-TPNFVPNSHYSSFD 506 (750)
Q Consensus 431 p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~ 506 (750)
+ ++..|..++.-|.+.-+..-...++. ...++....+......... +..... ........ +.+.+...+...
T Consensus 376 ~~~V~a~~~~lrqyFrr~e~~~~~~i~~--~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~-- 451 (1088)
T KOG4318|consen 376 GQNVDAFGALLRQYFRRIERHICSRIYY--AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPW-- 451 (1088)
T ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccc--
Confidence 2 33445555554443322111111111 0000000000000000000 000000 00000000 000000000000
Q ss_pred ccCCCCccHHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCC
Q 004480 507 KRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED--GMSPD 582 (750)
Q Consensus 507 ~~~~~~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~ 582 (750)
. ....+-...-+.++..|++ +..+++..-+.....-+ | ..|..||+-++...+.+.|..+.++.... .+..|
T Consensus 452 ~-~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld 527 (1088)
T KOG4318|consen 452 P-LIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLD 527 (1088)
T ss_pred h-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcc
Confidence 0 0001112233455555654 23344433332222111 1 56888888888888889998888888643 34456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 004480 583 VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ-IQPN-LVTYITLLRARSRYGSLHEVQQ 639 (750)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~li~~~~~~g~~~~~~~ 639 (750)
..-+..+.+.+.+.+....+..++++|.+.- ..|+ ..++--++......|+.+..++
T Consensus 528 ~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkk 586 (1088)
T KOG4318|consen 528 LPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKK 586 (1088)
T ss_pred cHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHH
Confidence 6778888888888888889999988887532 2232 4555666666677777766554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.2e-09 Score=100.04 Aligned_cols=197 Identities=13% Similarity=0.077 Sum_probs=93.8
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc
Q 004480 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-------MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290 (750)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 290 (750)
|.+..+.......|.+.|++.....++..+.+.|.-.+ ..+|+.+++-....+..+.-...+++.... .+-+
T Consensus 184 pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~ 262 (400)
T COG3071 184 PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRND 262 (400)
T ss_pred cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcC
Confidence 33344445555555555555555555555555553322 234555554444444444433344443321 1111
Q ss_pred HHHHHHHHH--hhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHH
Q 004480 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (750)
Q Consensus 291 ~~~~~~ll~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (750)
...-.+++. ..+|+.++|.++..+..+.+..|+.. .+-.+.+-++.+.-++..+.-.+. .+-+...+.+
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~-----h~~~p~L~~t 333 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ-----HPEDPLLLST 333 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh-----CCCChhHHHH
Confidence 111122221 23355555555555555554444311 111233344444444444433321 2233455556
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004480 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (750)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (750)
|...|.+.+.|.+|...|+..++. .|+..+|+.+.++|.+.|+..+|.+..++..-
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 666666666666666666655543 45666666666666666666666666665543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-08 Score=94.46 Aligned_cols=151 Identities=12% Similarity=0.059 Sum_probs=95.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccC--HHHHHHHHHHHHhccCHHH
Q 004480 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQM 381 (750)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~--~~~~~~li~~~~~~g~~~~ 381 (750)
+.+.|..++....+.+ +..+..--.+.+.....|+++.|.+.++.+.+. .|+ ..+...|..+|...|+.++
T Consensus 195 ~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------n~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 195 DVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ------NPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh------ChHHHHHHHHHHHHHHHHhCCHHH
Confidence 4444555555444432 122333334667778888888888888888762 233 3456778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hCChHHHHHHHHH
Q 004480 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE---ACQFDRAFRLFRS 458 (750)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~ 458 (750)
....+..+.+.... ...-..+-.......-.+.|..++.+-..+ +|+...+..+|+.-.. -|...+.+.+++.
T Consensus 268 ~~~fL~~~~~~~~g--~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 268 GLNFLRRAMETNTG--ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred HHHHHHHHHHccCC--ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence 88888888775333 333333433334444466666666665554 7888888888886543 3456667777888
Q ss_pred Hhhcccc
Q 004480 459 WTLSKTQ 465 (750)
Q Consensus 459 ~~~~~~~ 465 (750)
|....+.
T Consensus 344 mvge~l~ 350 (389)
T COG2956 344 MVGEQLR 350 (389)
T ss_pred HHHHHHh
Confidence 8766543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-10 Score=119.78 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004480 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL 624 (750)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 624 (750)
.|+..+|.++++.-...|+++.|..++.+|.+.|+..+..-|..|+-+ .++..-+..+++-|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 589999999999999999999999999999999999998888888877 78888888999999999999999999888
Q ss_pred HHHHHhcCC
Q 004480 625 LRARSRYGS 633 (750)
Q Consensus 625 i~~~~~~g~ 633 (750)
+-.+...|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 888777544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-06 Score=82.95 Aligned_cols=472 Identities=10% Similarity=0.107 Sum_probs=320.0
Q ss_pred hhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHc
Q 004480 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (750)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (750)
..++++..|..+|++++...- ....+.++=+..-.++..+..|..++++.+. .-|.....|..-+..-..
T Consensus 84 esq~e~~RARSv~ERALdvd~--------r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDY--------RNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HhHHHHHHHHHHHHHHHhccc--------ccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHH
Confidence 367888899999999997431 1222223222222336788899999999887 346666667777777778
Q ss_pred CCChHHHHHHhhhC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004480 204 KPDVNLAIRYACIV---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (750)
Q Consensus 204 ~~~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (750)
.|++..|.++|+.- .++..+|.+.|+.=.+-+.++.|..+|++..- +.|++.+|-.....=.++|....|..+|.
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 89999999999873 66779999999999999999999999999886 56999999988888889999999999999
Q ss_pred HHHhC-CC-CccHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHHcCChHHHHHH--------
Q 004480 281 DLRSQ-NV-TLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEI-------- 346 (750)
Q Consensus 281 ~m~~~-g~-~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~-------- 346 (750)
...+. |- ..+...|+++-.. .++.++.|.-+|+-.... ++.+ ...|..+...=-+-|+.......
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 88754 21 1122333333332 235788888888887765 2223 34455555444455654433332
Q ss_pred HHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHH--HHHHHH-----HHH---HhcCCHHH
Q 004480 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI--TWSSLI-----NAC---ANAGLVEQ 416 (750)
Q Consensus 347 ~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li-----~~~---~~~g~~~~ 416 (750)
++.+.+ + -+.|-.+|--.++.-...|+.+...++|+..+.. ++|-.. .|.-.| -+| ....+++.
T Consensus 311 YE~~v~---~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 311 YEKEVS---K--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred HHHHHH---h--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 222222 2 2457778888888888889999999999999875 444221 122111 121 24678999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH----HhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccC
Q 004480 417 AMHLFEEMLQAGCEPNSQCCNILLQACV----EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492 (750)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (750)
+.++++..++. ++....||.-+--.|+ +..++..|.+++....
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-------------------------------- 431 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-------------------------------- 431 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--------------------------------
Confidence 99999999883 4556667766655554 5678888888887644
Q ss_pred CCCccCCCccccccccCCCCccHHHHHHHHHHH--HhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 004480 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQI 570 (750)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~--~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 570 (750)
|..|-.-++-..|..= .++++++..+++...+.+. -+..+|.-....=...|+.+.|..+
T Consensus 432 -----------------G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 432 -----------------GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred -----------------ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 3467777776665543 3589999999999999642 2667888877777889999999999
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHH-----------H
Q 004480 571 LKIMREDG-MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS--RYGSLH-----------E 636 (750)
Q Consensus 571 ~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~--~~g~~~-----------~ 636 (750)
|+-.++.. +.--...|-+.|+-=...|.+++|..+|+++.+. .+-..+|-++..-=. ..|+-+ .
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~ 571 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDEN 571 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhH
Confidence 99998742 1112456777777777899999999999999874 333345544443322 223222 3
Q ss_pred HHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHh
Q 004480 637 VQQCLAVYQDMWK--AGYKANDTYLKELIEEWCE 668 (750)
Q Consensus 637 ~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~ 668 (750)
...|..+|++... +...| ..---.|+.+|-.
T Consensus 572 ~~~AR~iferAn~~~k~~~~-KeeR~~LLEaw~~ 604 (677)
T KOG1915|consen 572 IKRARKIFERANTYLKESTP-KEERLMLLEAWKN 604 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHH
Confidence 4556667776543 12222 3334456666643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.4e-07 Score=85.68 Aligned_cols=288 Identities=13% Similarity=0.136 Sum_probs=208.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHH
Q 004480 292 YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (750)
Q Consensus 292 ~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~ 371 (750)
.+-..+++...|++..|+++..+-.+.+-. ....|..-..+-...|+.+.+-+++.++.+. .| .++...+.+...
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~--~~--~~~l~v~ltrar 161 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAEL--AG--DDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhcc--CC--CchHHHHHHHHH
Confidence 344556667778899999888887776532 2344555566777889999999999998872 11 345566778888
Q ss_pred HHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHH
Q 004480 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS-------QCCNILLQACV 444 (750)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~ 444 (750)
.....|+++.|..-++++.+.+.. +.........+|.+.|++.....++..|.+.|.--|. .+|+.+++-..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999988644 6778889999999999999999999999999865444 34555555444
Q ss_pred HhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHH
Q 004480 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (750)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 524 (750)
..+..+.-...++....+ .+-+...-.+++.-
T Consensus 241 ~~~~~~gL~~~W~~~pr~------------------------------------------------lr~~p~l~~~~a~~ 272 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRK------------------------------------------------LRNDPELVVAYAER 272 (400)
T ss_pred ccccchHHHHHHHhccHH------------------------------------------------hhcChhHHHHHHHH
Confidence 433333333333332211 11222222233333
Q ss_pred H--HhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004480 525 C--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQA 602 (750)
Q Consensus 525 ~--~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 602 (750)
+ |++.++|.++..+..+.+..|+... .-.+.+-++...-++..++-.+. ..-++-.+.+|...|.+.+.+.+|
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHH
Confidence 3 4678999999999999887777222 23456777877777777776554 122457888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004480 603 FSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQC 640 (750)
Q Consensus 603 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~a 640 (750)
.+.|+...+ ..|+..+|+.+-+++.+.|+..++++.
T Consensus 348 ~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 348 SEALEAALK--LRPSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred HHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHH
Confidence 999997776 689999999999999999998886653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-09 Score=110.66 Aligned_cols=252 Identities=13% Similarity=0.080 Sum_probs=150.7
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc---CCCcc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPL 147 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~---~~~p~ 147 (750)
......+...|...|+++.|+.+++.+++.=.+.....++.....+..+...|...+++++|+.+|++++.. ...++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 667777999999999999999999999876111111223334455556777899999999999999999875 22233
Q ss_pred ccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC------CCCcccccHHHHHHHHHcCCChHHHHHHhhhC----
Q 004480 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR------LPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---- 217 (750)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---- 217 (750)
.. ....++.+....|...|++++|...+++....- ..+.-...+..++..+...+++++|..++...
T Consensus 279 h~---~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 279 HP---AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CH---HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 33 344555665666777999999998888765421 11222233444455555555555555544331
Q ss_pred ---C-C-C---cchHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 218 ---P-R-A---DILFCNFVREFGKKRDLVSALRAYDASKKHL----S--SPN-MYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 218 ---~-~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
+ . + ..+++.|...|...|++++|+++|.+++... . .+. ...++.+...|.+.+++.+|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 1 1 1 1344555555555555555555555443211 0 111 223444444445555555555554433
Q ss_pred HhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 004480 283 RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (750)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 354 (750)
. . .|+..| .+-...+|..|...|...|+++.|.++.+.+....
T Consensus 436 ~--------------------------~---i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 436 K--------------------------D---IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred H--------------------------H---HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 2 1 122222 22335678899999999999999999988887544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-08 Score=110.57 Aligned_cols=186 Identities=10% Similarity=-0.044 Sum_probs=93.5
Q ss_pred CChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHH---hhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHH
Q 004480 85 GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIV---KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNE 161 (750)
Q Consensus 85 g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~ 161 (750)
+.+++|+.+|+++++. +|+..........+..... .+...+++++|...++++++ +.|+.. ..+..+..
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~--ldP~~~---~a~~~lg~- 346 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE--LDHNNP---QALGLLGL- 346 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh--cCCCCH---HHHHHHHH-
Confidence 4567999999999988 6654433222211100000 01234557788888888876 455443 12222222
Q ss_pred HHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCH
Q 004480 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDL 237 (750)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~ 237 (750)
.+...|++++|...|+++++.. |++...+..++..+...|++++|+..++.. |.+...+..++..+...|++
T Consensus 347 --~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 347 --INTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred --HHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH
Confidence 2233678888888888877754 666555555555555555555555554442 22222222223333344455
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
++|+..+++..+...+-+...+..+..++...|++++|...+.++
T Consensus 423 eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 423 DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 555555554443221112333444444444555555555555443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-06 Score=89.62 Aligned_cols=455 Identities=12% Similarity=0.081 Sum_probs=282.9
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccccc
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (750)
..+..++..| ..+++...+...+.++.. .|++-..+-.-+.. +...|+-++|.+..+..++..+. ...-
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~------L~~lg~~~ea~~~vr~glr~d~~--S~vC 77 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK--FPEHGESLAMKGLT------LNCLGKKEEAYELVRLGLRNDLK--SHVC 77 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh--CCccchhHHhccch------hhcccchHHHHHHHHHHhccCcc--cchh
Confidence 3444444444 458999999999999886 55544333333333 67899999999999988874332 2222
Q ss_pred chhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHH----HhhhCCCCcchHHHH
Q 004480 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR----YACIVPRADILFCNF 227 (750)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~~~~~~~~~~~l 227 (750)
...++.+-+ ...++++|++.|..++..+ +++...+..+.-.-.+.|+++.... +++..|.....|..+
T Consensus 78 wHv~gl~~R------~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~ 149 (700)
T KOG1156|consen 78 WHVLGLLQR------SDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGF 149 (700)
T ss_pred HHHHHHHHh------hhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence 223333322 2688999999999999855 9998888888777777777775544 455567777889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCccHHHHH---HH
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTII------DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN---SL 297 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~---~l 297 (750)
+.++.-.|++..|..+.++..+... .|+...+.-.. ....+.|.+++|++.+..-... ..|-..+. .-
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~ 227 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKAD 227 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHH
Confidence 9999999999999999998887542 35554444322 2345668888888777654322 12222221 12
Q ss_pred HHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHHHcCChHHHH-HHHHHHHHhhhcCCCccCHHHHHHH-HHHHH
Q 004480 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL-LKACCLAGNTVLAQ-EIYGEVKHLEAKGVLKLDVFTYSTI-VKVFA 374 (750)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~g~~~~A~-~~~~~~~~~~~~g~~~~~~~~~~~l-i~~~~ 374 (750)
+....+++++|..+|..+...+ ||..-|... ..++.+-.+.-++. .+|....+. .|-...-..+ ++.+.
T Consensus 228 l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~------y~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK------YPRHECPRRLPLSVLN 299 (700)
T ss_pred HHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc------CcccccchhccHHHhC
Confidence 2234578999999999999874 666555544 44444344444444 666665541 1211111111 11111
Q ss_pred hccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC----------CCCCHHHH--HH
Q 004480 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ----AG----------CEPNSQCC--NI 438 (750)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~----------~~p~~~~~--~~ 438 (750)
...-.+..-.++..+.+.|+++ +|..+...|-.....+-..++.-.+.. .| -+|+...| -.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 2223344556777778888764 445555544443333322222222221 11 14555544 45
Q ss_pred HHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHH
Q 004480 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518 (750)
Q Consensus 439 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 518 (750)
+...+-+.|+++.|...++..... .|+.+-.
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdH-------------------------------------------------TPTliEl 407 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDH-------------------------------------------------TPTLIEL 407 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhcc-------------------------------------------------CchHHHH
Confidence 677888999999999999876543 4444322
Q ss_pred ---HHHHHHHHhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH--------HH
Q 004480 519 ---NILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVA--------YT 587 (750)
Q Consensus 519 ---~~li~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--------~~ 587 (750)
-+-|.-+.+++++|..++++..+.. .||...-.--..-..+..+.++|.++.....+.|. +... |-
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf 484 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWF 484 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHH
Confidence 2334445578999999999998864 35665555566666788999999999999988765 3322 22
Q ss_pred HH--HHHHHHcCCHHHHHHHHHHHH
Q 004480 588 TA--IKVCVRSKRLKQAFSLFEEMK 610 (750)
Q Consensus 588 ~l--i~~~~~~g~~~~A~~~~~~m~ 610 (750)
.+ ..+|.+.|++..|++-|....
T Consensus 485 ~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 485 QLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 22 246778888888777666554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-08 Score=104.15 Aligned_cols=215 Identities=16% Similarity=0.147 Sum_probs=150.5
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc
Q 004480 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKH-----L-SSPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290 (750)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 290 (750)
|....+...+...|...|+++.|+.++.+..+. | ..|.+. ..+.+...|...+++.+|..+|+++..
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~------ 269 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT------ 269 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH------
Confidence 333466777999999999999999999887763 2 124443 344477788889999999999987643
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhc--CCCccCHHH-HH
Q 004480 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GVLKLDVFT-YS 367 (750)
Q Consensus 291 ~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--g~~~~~~~~-~~ 367 (750)
+++.......+.-..+++.|..+|++.|++++|...++....+... |...|.+.. ++
T Consensus 270 --------------------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 270 --------------------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred --------------------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 3333332222333567788888999999999999998887765443 222333333 56
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCC-CH
Q 004480 368 TIVKVFADAKWWQMALKVKEDMLSA---GVTPN----TITWSSLINACANAGLVEQAMHLFEEMLQAG------CEP-NS 433 (750)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p-~~ 433 (750)
.+...++..+++++|..+++...+. -+.++ ..+++.|...|.+.|++++|.+++++..... ..+ ..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 6777788889999998888876542 11222 4578888888889999999998888876531 122 24
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 434 QCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
..++.+-..|.+.+++.+|.++|.+
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHH
Confidence 5677777788888888888888865
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-06 Score=84.74 Aligned_cols=505 Identities=7% Similarity=-0.025 Sum_probs=277.2
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
..-+..+.+-+..+.++.-|+-+.++....+.+|...- .+...+.-.|+++.|..++..-.-.+.
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~---------~~aq~l~~~~~y~ra~~lit~~~le~~------ 80 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIY---------WLAQVLYLGRQYERAAHLITTYKLEKR------ 80 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHH---------HHHHHHHhhhHHHHHHHHHHHhhhhhh------
Confidence 56677778888889999999999999998888887543 233446678888888877754321111
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHH-HHHHHHcCCChHHHHHHhhhCCCC--cchHHHH
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR-IVQLCVNKPDVNLAIRYACIVPRA--DILFCNF 227 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~l 227 (750)
+......... .+....++++|..++....... .| ...+.. -+... ..+.+. +..+.+ ...+..-
T Consensus 81 d~~cryL~~~---~l~~lk~~~~al~vl~~~~~~~-~~--f~yy~~~~~~~l----~~n~~~---~~~~~~~essic~lR 147 (611)
T KOG1173|consen 81 DIACRYLAAK---CLVKLKEWDQALLVLGRGHVET-NP--FSYYEKDAANTL----ELNSAG---EDLMINLESSICYLR 147 (611)
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHhcccchhh-cc--hhhcchhhhcee----ccCccc---ccccccchhceeeee
Confidence 1112222222 2344678888888776321000 00 000000 00000 000000 000111 1122222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC-CCCccHHHHHHHHHhh-cCC
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMNVN-AHD 304 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~-~~~ 304 (750)
...|....+.++|...|.+... .|...+.++...-... =..++-..+|+.+.-. -.+.+......+.... ++.
T Consensus 148 gk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~ 223 (611)
T KOG1173|consen 148 GKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKN 223 (611)
T ss_pred eehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhh
Confidence 3456666777888888877765 4555554444322111 1112222333321100 1112222222322221 110
Q ss_pred hH-HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHH
Q 004480 305 LK-FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (750)
Q Consensus 305 ~~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~ 383 (750)
.+ .....-.+..-.+..-+........+-+...+++.+..++++.+.+. .++....+..-|.++...|+..+-.
T Consensus 224 ~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-----dpfh~~~~~~~ia~l~el~~~n~Lf 298 (611)
T KOG1173|consen 224 RNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-----DPFHLPCLPLHIACLYELGKSNKLF 298 (611)
T ss_pred ccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-----CCCCcchHHHHHHHHHHhcccchHH
Confidence 00 00000000111123345555555666666777788877777777653 3455566666667777777777776
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcc
Q 004480 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (750)
Q Consensus 384 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 463 (750)
.+=.+|.+.- +-...+|-++.-.|.-.|+..+|.+.|.+...-. +.=...|-.+...|+-.|.-|.|+..+....+.-
T Consensus 299 ~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~ 376 (611)
T KOG1173|consen 299 LLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM 376 (611)
T ss_pred HHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence 6666666652 3356777777777777788888888887765432 1123456677777777777777777776543211
Q ss_pred cccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHHcC
Q 004480 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVG 543 (750)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~ 543 (750)
. -.--...|..+=.+..++.+.|.++|.+....
T Consensus 377 ~----------------------------------------------G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai- 409 (611)
T KOG1173|consen 377 P----------------------------------------------GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI- 409 (611)
T ss_pred c----------------------------------------------CCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-
Confidence 0 01112234444444445677777777776653
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004480 544 LSPNHISWTILIDACGGSGNVEGALQILKIMRED------GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN 617 (750)
Q Consensus 544 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 617 (750)
.+-|+...+-+.-...+.+.+.+|..+|...... ...-...+++.|..+|.+.++.++|+..+++.... ..-|
T Consensus 410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~ 488 (611)
T KOG1173|consen 410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKD 488 (611)
T ss_pred CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCc
Confidence 2235566777766666777788888887776521 01114456777777788888888888888877763 2336
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004480 618 LVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWC 667 (750)
Q Consensus 618 ~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 667 (750)
..++.++.-.+...|+++. |++.|.+-+ .+.||..+...++.-..
T Consensus 489 ~~~~asig~iy~llgnld~---Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDK---AIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHhcChHH---HHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 7777777777777787666 455666543 56677666666665443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-08 Score=95.37 Aligned_cols=199 Identities=12% Similarity=0.017 Sum_probs=137.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhh
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (750)
..+..+...|...|++++|...+++..+..+ .+...+..+...+...|++++|.+.|++..+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------- 95 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN--------------- 95 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------
Confidence 4567778888888888888888888876432 346677778888888888888888888776542
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHH
Q 004480 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (750)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~ 381 (750)
+.+...+..+...+...|++++|.+.++..... .........+..+...+...|++++
T Consensus 96 -------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 96 -------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED---PLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred -------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---cccccchHHHHHHHHHHHHcCCHHH
Confidence 223445555666677777777777777776641 1112234456666677777788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 004480 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (750)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (750)
|...+++..... +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 154 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 154 AEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888887777653 224556777777777788888888888877765 24455666666777777788888877766654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-08 Score=99.31 Aligned_cols=196 Identities=12% Similarity=0.046 Sum_probs=126.1
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
...+..++..+...|++++|+..+++++.. .|.... .+..+...+...|++++|.+.+++..+. .|+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~- 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYL------AYLALALYYQQLGELEKAEDSFRRALTL--NPNNG- 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCH-
Confidence 677888999999999999999999999887 454332 2334555688999999999999999974 33221
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHH
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 226 (750)
..+ ......+...|++++|.+.+++.......+.....+..++..+...|++++|...+... |.+...+..
T Consensus 100 --~~~---~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (234)
T TIGR02521 100 --DVL---NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE 174 (234)
T ss_pred --HHH---HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHH
Confidence 122 22222344589999999999998864333333444555566666666666666655442 333445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004480 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (750)
Q Consensus 227 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (750)
+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666666666666665554 22334444455555556666666666555543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-08 Score=109.86 Aligned_cols=212 Identities=9% Similarity=-0.035 Sum_probs=105.9
Q ss_pred CcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHc---------CCChHHHHHHhhhC----CCCcchHHHHHHHHHhcC
Q 004480 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN---------KPDVNLAIRYACIV----PRADILFCNFVREFGKKR 235 (750)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g 235 (750)
+..++|+.+|++.++.. |+....+..++.++.. .+++++|...+++. |.+..++..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 45678888888888754 7766666555544331 12244444444332 444445555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHH
Q 004480 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNM 315 (750)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m 315 (750)
++++|...|++..+.++ .+...+..+...+...|++++|...+++..+....
T Consensus 353 ~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~--------------------------- 404 (553)
T PRK12370 353 EYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT--------------------------- 404 (553)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------------------------
Confidence 55555555555554321 12334445555555555555555555555443211
Q ss_pred HHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCcc-CHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCC
Q 004480 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (750)
Q Consensus 316 ~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 394 (750)
+...+..++..+...|++++|...++++... .+| +...+..+..++...|++++|...+.++...
T Consensus 405 -------~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-- 470 (553)
T PRK12370 405 -------RAAAGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-- 470 (553)
T ss_pred -------ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--
Confidence 1122222333344456666666666655431 112 2333445555556666666666666655433
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004480 395 TPN-TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (750)
Q Consensus 395 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (750)
.|+ ....+.+...|+..| +.|...++.+.+
T Consensus 471 ~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 222 223334444445555 355555555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.7e-06 Score=82.99 Aligned_cols=446 Identities=14% Similarity=0.094 Sum_probs=246.5
Q ss_pred hHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCC--CcchH-HHHHHHHHhc
Q 004480 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR--ADILF-CNFVREFGKK 234 (750)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~l~~~~~~~ 234 (750)
+..-.......|++++|++...+++..+ |++......-+-++.+.+++++|+.+.+.-+. ....+ .--+...-+.
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 3333445666899999999999999866 88888888888899999999999977665442 11112 2223334478
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHhhcCChHHHHHHHH
Q 004480 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEVYK 313 (750)
Q Consensus 235 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~a~~~~~ 313 (750)
++.++|+..++-... .+..+...-...+-+.|++++|+.+|+.+.+.+.. .|...-..++.+-+ +... .
T Consensus 93 nk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-----~l~~-~ 162 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-----ALQV-Q 162 (652)
T ss_pred ccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-----hhhH-H
Confidence 999999999983222 23446666667788999999999999999877543 22222333332211 1111 1
Q ss_pred HHHHcCCCCCHhhHHHHHH---HHHHcCChHHHHHHHHHHHHhhhc----CCCc-cCH-----HHHHHHHHHHHhccCHH
Q 004480 314 NMQKLGVMADMASYNILLK---ACCLAGNTVLAQEIYGEVKHLEAK----GVLK-LDV-----FTYSTIVKVFADAKWWQ 380 (750)
Q Consensus 314 ~m~~~g~~~~~~~~~~ll~---~~~~~g~~~~A~~~~~~~~~~~~~----g~~~-~~~-----~~~~~li~~~~~~g~~~ 380 (750)
.+......| ..+|..+.+ .+...|++.+|+++++...+.... +... -+. ..-..|.-.+-..|+-+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 222222233 335555554 445779999999999988443221 1001 111 12234455677899999
Q ss_pred HHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCH-H-HHHHHHHHHHHcC-------C---CCCHHHHHH-HHHHH
Q 004480 381 MALKVKEDMLSAGVTPNTIT----WSSLINACANAGLV-E-QAMHLFEEMLQAG-------C---EPNSQCCNI-LLQAC 443 (750)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g~~-~-~a~~~~~~m~~~~-------~---~p~~~~~~~-ll~~~ 443 (750)
+|..++...+...+ +|... -|.|+ ++....++ + .++..++...... + .-.....|. ++..|
T Consensus 242 ea~~iy~~~i~~~~-~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP-ADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998754 34322 22222 22222221 1 1222222211100 0 011111222 22222
Q ss_pred HHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHH
Q 004480 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523 (750)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 523 (750)
.+..+.+.++-..... ..|... +.+++.
T Consensus 320 --tnk~~q~r~~~a~lp~-------------------------------------------------~~p~~~-~~~ll~ 347 (652)
T KOG2376|consen 320 --TNKMDQVRELSASLPG-------------------------------------------------MSPESL-FPILLQ 347 (652)
T ss_pred --hhhHHHHHHHHHhCCc-------------------------------------------------cCchHH-HHHHHH
Confidence 2233334333332211 123322 333333
Q ss_pred HHHh----cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHH
Q 004480 524 ACCT----DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILK--------IMREDGMSPDVVAYTTAIK 591 (750)
Q Consensus 524 ~~~~----~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~li~ 591 (750)
.+.+ ....+..++...-+....-...+--.++......|+++.|.+++. .+.+.+..|-. ...+..
T Consensus 348 ~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~ 425 (652)
T KOG2376|consen 348 EATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVA 425 (652)
T ss_pred HHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHH
Confidence 3321 244556666555554322234455566677778888888888888 55554444444 344555
Q ss_pred HHHHcCCHHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004480 592 VCVRSKRLKQAFSLFEEMKHY--QIQPNLV----TYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEE 665 (750)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~--g~~p~~~----t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 665 (750)
.+.+.++.+-|.+++.+.... .-.+... ++.-+...-.++|+.++ |..+++++++.. ++|..+...++.+
T Consensus 426 l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e---a~s~leel~k~n-~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 426 LYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE---ASSLLEELVKFN-PNDTDLLVQLVTA 501 (652)
T ss_pred HHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH---HHHHHHHHHHhC-CchHHHHHHHHHH
Confidence 666666666666666665421 0112222 23333333345676544 666788887754 3567777788888
Q ss_pred HHhhhhhhhhc
Q 004480 666 WCEGVIQDKNQ 676 (750)
Q Consensus 666 ~~~~~~~~~~~ 676 (750)
|++-+...+..
T Consensus 502 ~~~~d~eka~~ 512 (652)
T KOG2376|consen 502 YARLDPEKAES 512 (652)
T ss_pred HHhcCHHHHHH
Confidence 88755444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-06 Score=81.90 Aligned_cols=183 Identities=10% Similarity=-0.000 Sum_probs=114.7
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChh-hHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhh
Q 004480 79 SKLAKDGRLEEFAMIVESVVVSEGNVS-KFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (750)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~ 157 (750)
+-+..+.++..|+.+++.....+.+.+ ..+. .+...+.+.|++++|+..|.-+.+..-.|.. +.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~l--------Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e------l~v 95 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQL--------WIAHCYFHLGDYEEALNVYTFLMNKDDAPAE------LGV 95 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHH--------HHHHHHHhhccHHHHHHHHHHHhccCCCCcc------cch
Confidence 445558899999999988776643322 2222 2334466999999999999988875433322 222
Q ss_pred hHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCH
Q 004480 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (750)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~ 237 (750)
.+. |+.+ -.|.+.+|..+-.+. |+.+.....+.....+.++-++-..+.+.+.+...--.+|....-.+-.+
T Consensus 96 nLA-cc~F-yLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HY 167 (557)
T KOG3785|consen 96 NLA-CCKF-YLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHY 167 (557)
T ss_pred hHH-HHHH-HHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHH
Confidence 222 2222 268899998876653 23333334455555567777777777777666555555666655555678
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhC
Q 004480 238 VSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~ 285 (750)
.+|+.+|.++...+ |+....|.-+. +|.+..-++-+.+++.-..+.
T Consensus 168 QeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 168 QEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 88999988887643 55555555444 355666666677776665544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-06 Score=84.82 Aligned_cols=423 Identities=12% Similarity=0.048 Sum_probs=197.4
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 243 (750)
.+++...+++.+.++... |...++....+-.+...|+.++|....... +.+..-|..+.-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 567777777777777633 555555665666666677777777665543 33445666666666677777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccH-HHHHHHHHh--hcCChHHHHHHHHHHHHcC-
Q 004480 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-YVFNSLMNV--NAHDLKFTLEVYKNMQKLG- 319 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~--~~~~~~~a~~~~~~m~~~g- 319 (750)
|......+. -|...|.-+.-.-++.|+++.......++.+. .|.. ..|..+..+ ..|+...|..+.++..+..
T Consensus 98 y~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 98 YRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777766322 24445554444445566666666666555544 2222 223322222 2356666666666665543
Q ss_pred CCCCHhhHHHHHH------HHHHcCChHHHHHHHHHHHHhhhcCCCccCHHH-HHHHHHHHHhccCHHHHHHHHHHHHHC
Q 004480 320 VMADMASYNILLK------ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT-YSTIVKVFADAKWWQMALKVKEDMLSA 392 (750)
Q Consensus 320 ~~~~~~~~~~ll~------~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (750)
..|+...+..... ...+.|..++|.+.+...... ..|... -.+-...+.+.+++++|..++..++..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 2345444443322 233455556665555443321 122222 233344566677777777777777665
Q ss_pred CCCCCHHHHHHH-HHHHHhcCCHHHHH-HHHHHHHHcC---CCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccc
Q 004480 393 GVTPNTITWSSL-INACANAGLVEQAM-HLFEEMLQAG---CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (750)
Q Consensus 393 g~~p~~~~~~~l-i~~~~~~g~~~~a~-~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 467 (750)
.||..-|... ..++.+..+.-+++ .+|....+.- -.|-....+.+. -..-.+....++..+...|++.-
T Consensus 249 --nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~----~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 249 --NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLN----GEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred --CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhC----cchhHHHHHHHHHHHhhcCCCch
Confidence 3444444433 33333333333333 4444443321 011111111110 01111222233333333332211
Q ss_pred cCCCCCCchhhhhh--hhhhhcccccCCCCccCCCccccccc-cCCCCccHHHHHHHHHH--H--HhcHHHHHHHHHHHH
Q 004480 468 LGEDYDGNTDRISN--MEHKDKQSITNTPNFVPNSHYSSFDK-RFSFKPTTTTYNILMKA--C--CTDYYRVKALMNEMR 540 (750)
Q Consensus 468 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~li~~--~--~~~~~~a~~l~~~m~ 540 (750)
.... ...... -.......++...+.+.......... ..--+|....|...-.+ + .++++.|...++...
T Consensus 323 f~dl----~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 323 FKDL----RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred hhhh----HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 0000 000000 00000000011111111111111111 11124444444333222 1 235666666666666
Q ss_pred HcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004480 541 TVGLSPNHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI 614 (750)
Q Consensus 541 ~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 614 (750)
.+ .|+.+ -|-.=...+.+.|++++|..++++..+.. .||...-..-..-..++.+.++|.++.....+.|.
T Consensus 399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 53 34433 34444466666677777777776666543 23444333444555566667777776666666554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.2e-08 Score=86.28 Aligned_cols=197 Identities=13% Similarity=0.014 Sum_probs=151.6
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
......|+-.|...|++..|..-+++++++ +|+.+...+....+ |.+.|..+.|.+.|+++++ +.|+.-.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~------Yq~~Ge~~~A~e~YrkAls--l~p~~Gd 104 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHY------YQKLGENDLADESYRKALS--LAPNNGD 104 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH------HHHcCChhhHHHHHHHHHh--cCCCccc
Confidence 567778889999999999999999999999 88877665555555 8899999999999999998 5665543
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHH
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 226 (750)
...-|..+ +..+|++++|...|++.......+....++.+++-+..+.|+.+.|..++++. |..+.+...
T Consensus 105 VLNNYG~F------LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~ 178 (250)
T COG3063 105 VLNNYGAF------LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE 178 (250)
T ss_pred hhhhhhHH------HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH
Confidence 32333333 23389999999999998887766777777888888888888888888877663 556667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 227 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (750)
+.....+.|++-.|...++.....+. ++..+.-..|+.-...|+.+.+.+.=.++.+
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77888888888888888888777665 7777777777777777887777665555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-07 Score=92.29 Aligned_cols=280 Identities=13% Similarity=0.070 Sum_probs=195.9
Q ss_pred hhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChH----HHHHHhhhCCCCcchHHHHHHHHH
Q 004480 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVREFG 232 (750)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~l~~~~~ 232 (750)
++...+..+-..+++.+-.++.+.+.+.. |.....+..-+..+...|+.. .+.++.+..|+...+|.++.-.|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH
Confidence 34444444445778888888888777644 444443443344555555543 344556666788888888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCccHHHHHHHHHhhcCChHHHH
Q 004480 233 KKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQ--NVTLNIYVFNSLMNVNAHDLKFTL 309 (750)
Q Consensus 233 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~a~ 309 (750)
-.|++.+|++.|.+.... .|. ...|-.+...|.-.|..++|...|...-+. |.. -...|..+=....++.+.|.
T Consensus 324 ~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhccHHHHH
Confidence 788888888888876652 232 346777888888888888888877766543 211 12233333334456778888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC-CCc-cCHHHHHHHHHHHHhccCHHHHHHHHH
Q 004480 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLK-LDVFTYSTIVKVFADAKWWQMALKVKE 387 (750)
Q Consensus 310 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g-~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~ 387 (750)
+.|.+..... +-|+..++-+.-.....+.+.+|..+|+......+.- .-. .-..+++.|..+|.+.+++++|+..++
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 8887776543 5578888888888888899999999998876422111 001 123468888999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004480 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (750)
Q Consensus 388 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 445 (750)
+.+... +-+..++.++.-.|...|+++.|.+.|.+.+. +.|+..+...++..+..
T Consensus 480 ~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 480 KALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 998874 44889999999999999999999999999875 48888887777775544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-05 Score=78.84 Aligned_cols=345 Identities=11% Similarity=0.114 Sum_probs=181.5
Q ss_pred ccchhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHH
Q 004480 56 QTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGV 135 (750)
Q Consensus 56 ~~~~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 135 (750)
.++|-..+.++|-+ ...|...+..-.. .-.+.-..+|+++... -|.++..+.. |.+.
T Consensus 13 DvpfEeEilRnp~s-vk~W~RYIe~k~~-sp~k~~~~lYERal~~--lp~sykiW~~----------YL~~--------- 69 (835)
T KOG2047|consen 13 DVPFEEEILRNPFS-VKCWLRYIEHKAG-SPDKQRNLLYERALKE--LPGSYKIWYD----------YLKA--------- 69 (835)
T ss_pred ccchHHHHHcCchh-HHHHHHHHHHHcc-CChHHHHHHHHHHHHH--CCCchHHHHH----------HHHH---------
Confidence 45576778888988 8888888887765 3334566677888777 4554433222 1110
Q ss_pred HHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhh
Q 004480 136 LKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (750)
Q Consensus 136 l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (750)
++..-.+..|... .+..+ +.-++.++-.+.+| +..|..-++.+..++++....+.|.
T Consensus 70 -R~~~vk~~~~T~~----~~~~v---------n~c~er~lv~mHkm---------pRIwl~Ylq~l~~Q~~iT~tR~tfd 126 (835)
T KOG2047|consen 70 -RRAQVKHLCPTDP----AYESV---------NNCFERCLVFMHKM---------PRIWLDYLQFLIKQGLITRTRRTFD 126 (835)
T ss_pred -HHHHhhccCCCCh----HHHHH---------HHHHHHHHHHHhcC---------CHHHHHHHHHHHhcchHHHHHHHHH
Confidence 1111112222111 11111 11122222222211 1123333444444455544444443
Q ss_pred hC----C--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 004480 216 IV----P--RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ---- 285 (750)
Q Consensus 216 ~~----~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 285 (750)
.. | ....+|...+......+-.+-+.+++++.++ .++..-+.-+..+++.+++++|-+.+...+..
T Consensus 127 rALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~ 202 (835)
T KOG2047|consen 127 RALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFV 202 (835)
T ss_pred HHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhh
Confidence 31 2 1235566666666666666677777777665 23333555666666777777777666665422
Q ss_pred --CCCccHHHHHHHHHhhcCChHH-----HHHHHHHHHHcCCCCC--HhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhc
Q 004480 286 --NVTLNIYVFNSLMNVNAHDLKF-----TLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (750)
Q Consensus 286 --g~~~~~~~~~~ll~~~~~~~~~-----a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 356 (750)
..+-+...|.-+....+.+.+. ...+++.+... -+| ...|++|.+-|.+.|.+++|..+|++....
T Consensus 203 sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--- 277 (835)
T KOG2047|consen 203 SKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--- 277 (835)
T ss_pred hhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---
Confidence 1233444555554443332222 22333333332 233 346778888888888888888888876641
Q ss_pred CCCccCHHHHHHHHHHHHhcc----------------------CHHHHHHHHHHHHHCCC-----------CCCHHHHHH
Q 004480 357 GVLKLDVFTYSTIVKVFADAK----------------------WWQMALKVKEDMLSAGV-----------TPNTITWSS 403 (750)
Q Consensus 357 g~~~~~~~~~~~li~~~~~~g----------------------~~~~a~~~~~~m~~~g~-----------~p~~~~~~~ 403 (750)
..+..-|+.+.++|+... +++-.+.-|+.+...+. +-++..|..
T Consensus 278 ---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k 354 (835)
T KOG2047|consen 278 ---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK 354 (835)
T ss_pred ---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh
Confidence 233444444444444221 12233344444443321 123333433
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 404 LINACANAGLVEQAMHLFEEMLQAGCEPN------SQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
-+. ...|+..+-...+.+..+. +.|- ...|..+.+.|...|+++.|..+|++...
T Consensus 355 RV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 355 RVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred hhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 333 2346677777778777764 2221 24578888899999999999999988654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.8e-06 Score=82.58 Aligned_cols=461 Identities=11% Similarity=0.016 Sum_probs=242.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchh
Q 004480 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (750)
Q Consensus 75 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~ 154 (750)
.+=+..+..+|++++|.....+++..++++. +++-+=+.++.+.++|++|+.+.+.=.. .. .++..
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~--------~a~~cKvValIq~~ky~~ALk~ikk~~~--~~----~~~~~ 81 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDE--------DAIRCKVVALIQLDKYEDALKLIKKNGA--LL----VINSF 81 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCcH--------hhHhhhHhhhhhhhHHHHHHHHHHhcch--hh----hcchh
Confidence 3445666778999999999999999865433 3344556667899999999955443221 01 11111
Q ss_pred hhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC-CCCcchHHHHHHH-HH
Q 004480 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-PRADILFCNFVRE-FG 232 (750)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~l~~~-~~ 232 (750)
+ +-++++.| +.++.++|+..++ +..+.+.-+...-.+.+-+.+++++|+.+|..+ ..+...+...+.+ +.
T Consensus 82 ~--fEKAYc~Y-rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 82 F--FEKAYCEY-RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred h--HHHHHHHH-HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 1 34555544 4799999999988 333555545666678888999999999999887 3332222222211 11
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhC-------CCC--ccHHHHHHHHH-
Q 004480 233 KKRDLVSALRAYDASKKHLSSPNMYICRTI---IDVCGICGDYMKSRAIYEDLRSQ-------NVT--LNIYVFNSLMN- 299 (750)
Q Consensus 233 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~-------g~~--~~~~~~~~ll~- 299 (750)
..+-...+. +.+... ..| ..+|..+ .-.+...|++.+|+++++..... +-. -+...=-..|+
T Consensus 154 a~~a~l~~~-~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 154 AVAAALQVQ-LLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred HHHHhhhHH-HHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 111111111 222221 223 2233333 33466789999999999887221 111 11111112222
Q ss_pred ------hhcCChHHHHHHHHHHHHcCCCCCHh----hHHHHHHHHHHcCChH-HHHHHHHHHHHhhhcCC------CccC
Q 004480 300 ------VNAHDLKFTLEVYKNMQKLGVMADMA----SYNILLKACCLAGNTV-LAQEIYGEVKHLEAKGV------LKLD 362 (750)
Q Consensus 300 ------~~~~~~~~a~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~g~~~-~A~~~~~~~~~~~~~g~------~~~~ 362 (750)
-..|+.++|..+|...++.. ++|.. .-|.|+..-....-++ .++..++.......... -...
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~ 307 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ 307 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 13488999999999998876 34442 2333333222221122 12222222211000000 0011
Q ss_pred HHHH-HHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004480 363 VFTY-STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN--AGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (750)
Q Consensus 363 ~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (750)
.+.. +.++..|. +..+.+.++-.... +..| ...+.+++..+.+ ......+.+++...-+..-.-...+.-.+
T Consensus 308 ~i~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~ 382 (652)
T KOG2376|consen 308 AIYRNNALLALFT--NKMDQVRELSASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLR 382 (652)
T ss_pred HHHHHHHHHHHHh--hhHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHH
Confidence 1111 22222222 22223333222221 1122 3445555554433 22467777777777665322234556666
Q ss_pred HHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHH
Q 004480 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519 (750)
Q Consensus 440 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 519 (750)
+......|+++.|.+++........ ..+...+..|..+.+-
T Consensus 383 aQl~is~gn~~~A~~il~~~~~~~~---------------------------------------ss~~~~~~~P~~V~ai 423 (652)
T KOG2376|consen 383 AQLKISQGNPEVALEILSLFLESWK---------------------------------------SSILEAKHLPGTVGAI 423 (652)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhh---------------------------------------hhhhhhccChhHHHHH
Confidence 7778889999999999984431110 0011222355555554
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHc--CCCCCHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004480 520 ILMKACCTDYYRVKALMNEMRTV--GLSPNHI----SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVC 593 (750)
Q Consensus 520 ~li~~~~~~~~~a~~l~~~m~~~--~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 593 (750)
..+.--.++.+.|..++++.+.. .-.+... ++.-+...-.+.|+.++|..+++++.+.. .+|..+...++.+|
T Consensus 424 v~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 424 VALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAY 502 (652)
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHH
Confidence 44433344555555555555432 0011112 23333333456688888888888887743 55778888888888
Q ss_pred HHcCCHHHHHHHHHHH
Q 004480 594 VRSKRLKQAFSLFEEM 609 (750)
Q Consensus 594 ~~~g~~~~A~~~~~~m 609 (750)
++. ++++|..+-+.+
T Consensus 503 ~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 503 ARL-DPEKAESLSKKL 517 (652)
T ss_pred Hhc-CHHHHHHHhhcC
Confidence 765 567777766654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.2e-08 Score=89.82 Aligned_cols=223 Identities=12% Similarity=0.001 Sum_probs=161.2
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHH
Q 004480 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (750)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (750)
..+...|.+.|-+.+|...|+..++.-..| .+|-.+.++ |.+-.+++.|+.++.+-++ ..|.++.....
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~------dTfllLskv---Y~ridQP~~AL~~~~~gld--~fP~~VT~l~g 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP------DTFLLLSKV---YQRIDQPERALLVIGEGLD--SFPFDVTYLLG 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch------hHHHHHHHH---HHHhccHHHHHHHHhhhhh--cCCchhhhhhh
Confidence 567778999999999999999988764444 355555554 4447889999999998777 44888888888
Q ss_pred HHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004480 197 IVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272 (750)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 272 (750)
..+.+...++.++|.++|+.+ |.+..+...+...|.-.++.+-|++.|.++.+.|+ .+...|+.+.-+|...+++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 888888888888888887764 44456666677777778888888888888888877 4567777777778888888
Q ss_pred HHHHHHHHHHHhCCCCccH--HHHHHH--HHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHH
Q 004480 273 MKSRAIYEDLRSQNVTLNI--YVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348 (750)
Q Consensus 273 ~~A~~~~~~m~~~g~~~~~--~~~~~l--l~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 348 (750)
+-++.-|......--.|+. ..|-.+ +.+-.||+..|.+.|+-....+ .-+...+|.|.-.-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 8888888877654333332 222222 2234477777777777666543 3456677777777777788888887777
Q ss_pred HHHH
Q 004480 349 EVKH 352 (750)
Q Consensus 349 ~~~~ 352 (750)
....
T Consensus 454 ~A~s 457 (478)
T KOG1129|consen 454 AAKS 457 (478)
T ss_pred Hhhh
Confidence 7665
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-05 Score=74.68 Aligned_cols=301 Identities=11% Similarity=0.064 Sum_probs=171.1
Q ss_pred chHHHHHHHHHhc--CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 004480 222 ILFCNFVREFGKK--RDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (750)
Q Consensus 222 ~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 298 (750)
......+.+++.. ++...|...+-.+... -.+-|+.....+.+.+...|+.++|+..|++....+ |+..+
T Consensus 195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~----- 267 (564)
T KOG1174|consen 195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVE----- 267 (564)
T ss_pred cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhh-----
Confidence 3333344444433 4444444444333322 244567788888888888888888888888766431 21111
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccC
Q 004480 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (750)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~ 378 (750)
......-.+.+.|+.+....+...+-.. ..-....|-.-...+...++
T Consensus 268 ---------------------------~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-----~~~ta~~wfV~~~~l~~~K~ 315 (564)
T KOG1174|consen 268 ---------------------------AMDLYAVLLGQEGGCEQDSALMDYLFAK-----VKYTASHWFVHAQLLYDEKK 315 (564)
T ss_pred ---------------------------hHHHHHHHHHhccCHhhHHHHHHHHHhh-----hhcchhhhhhhhhhhhhhhh
Confidence 1111111223444554444444443321 11222233333334445566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
++.|+.+-++.++.+. -+...|-.=...+...|++++|.-.|+...... +-+...|.-|+..|...|++.+|.-+-+.
T Consensus 316 ~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 6666666666655431 133444444455556666666666666665432 23556666666666666666666554433
Q ss_pred HhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHH-HHHH---hcHHHHHH
Q 004480 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM-KACC---TDYYRVKA 534 (750)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li-~~~~---~~~~~a~~ 534 (750)
....- +-+..+...+- ..|. .--++|..
T Consensus 394 ~~~~~------------------------------------------------~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 394 TIRLF------------------------------------------------QNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred HHHHh------------------------------------------------hcchhhhhhhcceeeccCchhHHHHHH
Confidence 22110 11111111110 1111 12467777
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004480 535 LMNEMRTVGLSPNH-ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (750)
Q Consensus 535 l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (750)
+++.-.+ +.|+- ...+.+...|...|..+.++.+++..... .||....+.|.+.+...+.+.+|.+.|....+
T Consensus 426 f~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr-- 499 (564)
T KOG1174|consen 426 FAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR-- 499 (564)
T ss_pred HHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Confidence 7777666 45654 35677788889999999999999998774 89999999999999999999999999998876
Q ss_pred CCCC
Q 004480 614 IQPN 617 (750)
Q Consensus 614 ~~p~ 617 (750)
+.|+
T Consensus 500 ~dP~ 503 (564)
T KOG1174|consen 500 QDPK 503 (564)
T ss_pred cCcc
Confidence 3453
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-05 Score=74.87 Aligned_cols=447 Identities=12% Similarity=0.083 Sum_probs=233.4
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (750)
+....++..|+.+++-....+-+- ......++..|. ...|++++|+..++-+....-.|. ..+-.+.-.+.
T Consensus 32 fls~rDytGAislLefk~~~~~EE-----E~~~~lWia~C~--fhLgdY~~Al~~Y~~~~~~~~~~~--el~vnLAcc~F 102 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREE-----EDSLQLWIAHCY--FHLGDYEEALNVYTFLMNKDDAPA--ELGVNLACCKF 102 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhh-----hHHHHHHHHHHH--HhhccHHHHHHHHHHHhccCCCCc--ccchhHHHHHH
Confidence 456788999999988776432221 123444554443 347999999999998877553333 33444444444
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
-.|.+.+|..+....|+++.--..+...-.+.++-++-..+-..+... ..---++....-..-.+++|+++|...
T Consensus 103 yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999988888887755555555556667766655555444331 112223333333344788888888888
Q ss_pred HhCCCCccHHHHHHHHHh---hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCC
Q 004480 283 RSQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359 (750)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~ 359 (750)
... .|+-...|.-+.. ...-++-+.++++-..+. ++.++...|.......+.=.-..|..-...+.. ++.
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~lad---N~~- 250 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELAD---NID- 250 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHh---ccc-
Confidence 765 3444444444442 223445556666555443 233344444444333333222222222222221 110
Q ss_pred ccCHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004480 360 KLDVFTYSTIVKVFADA-----KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (750)
Q Consensus 360 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 434 (750)
.. -..+.-+++. ..-+.|++++--+.+. .|. .--.|+-.|.+.+++.+|..+.+++.- ..|-..
T Consensus 251 --~~---~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~Ey 319 (557)
T KOG3785|consen 251 --QE---YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEY 319 (557)
T ss_pred --cc---chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHH
Confidence 00 1122222322 3446677777666543 333 234556667788888888887776631 122222
Q ss_pred HHHHHHHHHHHhCC-------hHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccc
Q 004480 435 CCNILLQACVEACQ-------FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507 (750)
Q Consensus 435 ~~~~ll~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (750)
..-.++. ...|+ +.-|.+.|+-.-.
T Consensus 320 ilKgvv~--aalGQe~gSreHlKiAqqffqlVG~---------------------------------------------- 351 (557)
T KOG3785|consen 320 ILKGVVF--AALGQETGSREHLKIAQQFFQLVGE---------------------------------------------- 351 (557)
T ss_pred HHHHHHH--HHhhhhcCcHHHHHHHHHHHHHhcc----------------------------------------------
Confidence 2222222 22222 3333444332211
Q ss_pred cCCCCccHHHHHHHHHHH---HhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 004480 508 RFSFKPTTTTYNILMKAC---CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (750)
Q Consensus 508 ~~~~~p~~~~~~~li~~~---~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 584 (750)
.+..-|++.-.--+.+| ...+++....++.+..--...|...|| +..+++..|++.+|+++|-.+....++ |..
T Consensus 352 -Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~ 428 (557)
T KOG3785|consen 352 -SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKI 428 (557)
T ss_pred -cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhH
Confidence 12233333322222222 245666666666666554444555554 567777788888888888777654444 555
Q ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 004480 585 AYTTAI-KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL-LRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLK 660 (750)
Q Consensus 585 ~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-i~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 660 (750)
+|-+++ .+|.+.++++-|+.++-++. -..+..+.-.+ ..-|.+.+.+--+.+|+..++ .. .|++..|.
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~l--DP~pEnWe 498 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE---IL--DPTPENWE 498 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---cc--CCCccccC
Confidence 665444 56777888888777666553 22233333333 344556665554444443333 22 45555544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-06 Score=81.18 Aligned_cols=328 Identities=13% Similarity=0.097 Sum_probs=213.2
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
..-...++..+..+|++.+|+.-|..+++. +|+.|.......+. |...|+-.-|+.=|++.++ +.||..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~------yLAmGksk~al~Dl~rVle--lKpDF~- 106 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATV------YLAMGKSKAALQDLSRVLE--LKPDFM- 106 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHH------HhhhcCCccchhhHHHHHh--cCccHH-
Confidence 445567888999999999999999999988 89988877666665 8899999999999999997 677543
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (750)
.+-+.-...+.++|++++|..=|+.++... |.+.. ..+|..-...+.. ....-..+..
T Consensus 107 -----~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~--------------~~eaqskl~~~~e-~~~l~~ql~s 164 (504)
T KOG0624|consen 107 -----AARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGL--------------VLEAQSKLALIQE-HWVLVQQLKS 164 (504)
T ss_pred -----HHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcch--------------hHHHHHHHHhHHH-HHHHHHHHHH
Confidence 333333334556999999999999998866 43211 1111111100000 1222334555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHH-HHHhhcCChHHH
Q 004480 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS-LMNVNAHDLKFT 308 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-ll~~~~~~~~~a 308 (750)
+...|+...|+.....+++ +.| |...|..-..+|...|.+..|+.-++..-+..-..+...|.+ -+....|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 6677999999999999888 445 666777888889999999998877776654321112222221 111122555555
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 004480 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (750)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (750)
+...++-.+. .||...+-. .| ..+.+..+.++.|.+ ..+.++|.+++...+.
T Consensus 243 L~~iRECLKl--dpdHK~Cf~---~Y---KklkKv~K~les~e~--------------------~ie~~~~t~cle~ge~ 294 (504)
T KOG0624|consen 243 LKEIRECLKL--DPDHKLCFP---FY---KKLKKVVKSLESAEQ--------------------AIEEKHWTECLEAGEK 294 (504)
T ss_pred HHHHHHHHcc--CcchhhHHH---HH---HHHHHHHHHHHHHHH--------------------HHhhhhHHHHHHHHHH
Confidence 5555555543 344322211 11 112222222333322 4456778888888888
Q ss_pred HHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHhhcc
Q 004480 389 MLSAGVTPNTI---TWSSLINACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (750)
Q Consensus 389 m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 463 (750)
..+....-... .+..+-.++...|++.+|++.-.+.++. .| |+.++.--..+|.-...++.|..-|+...+.+
T Consensus 295 vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 295 VLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 87764332222 3455667778889999999999998875 45 47788888889998899999999998876543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.7e-06 Score=87.22 Aligned_cols=206 Identities=12% Similarity=-0.034 Sum_probs=129.3
Q ss_pred CCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCC
Q 004480 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (750)
Q Consensus 66 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 144 (750)
+|+. ...|..++..+...|+.+++...+........ +++....... ....+...|++++|.+.++++++.
T Consensus 2 dp~~-~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~------~a~~~~~~g~~~~A~~~~~~~l~~-- 72 (355)
T cd05804 2 DPDF-ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHV------EALSAWIAGDLPKALALLEQLLDD-- 72 (355)
T ss_pred CCcc-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHH--
Confidence 5677 67777788888888999998888877766632 2221111111 122356889999999999999874
Q ss_pred CccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCC
Q 004480 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRA 220 (750)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~ 220 (750)
.|+.. ..+.............+....+.+.++. .....|........++..+...|++++|...++. .|.+
T Consensus 73 ~P~~~---~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~ 147 (355)
T cd05804 73 YPRDL---LALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD 147 (355)
T ss_pred CCCcH---HHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 45432 1111000000011113555555555554 1122244444444556677888888888887766 3666
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNM--YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
...+..+...|...|++++|...+++....... ++. ..|..+...+...|++++|..+|++....
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 677778888888888888888888887764321 222 24556777788888888888888887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.7e-06 Score=85.79 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHH
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 295 (750)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++++ |+...|.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy 75 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYY 75 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHH
Confidence 34566778999999888775542 32334566677778888899999999999988874 4444433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-06 Score=81.65 Aligned_cols=288 Identities=11% Similarity=-0.020 Sum_probs=169.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhh
Q 004480 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (750)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~ 157 (750)
+.+.+-.|+-..|...+-.+.....-|..... +..+...+...|+.++|+..|++... +.|...+.-..|..
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhL------l~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~ 274 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNEHL------MMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAV 274 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhccCCccHHH------HHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHH
Confidence 33444445555555555555444444443333 33344447777888888888877775 56655544444444
Q ss_pred hHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHh
Q 004480 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGK 233 (750)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~ 233 (750)
++. ..|++++--.+...+.... ......|..-+..+-...+++.|+.+.++. +++...+-.-...+..
T Consensus 275 LL~------~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 275 LLG------QEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA 346 (564)
T ss_pred HHH------hccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh
Confidence 432 3677777666666655422 112223444444444566777777666553 3444555555677778
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHH-Hhhc---CChHHH
Q 004480 234 KRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NVNA---HDLKFT 308 (750)
Q Consensus 234 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll-~~~~---~~~~~a 308 (750)
.++.++|.-.|..... ..| +...|.-|+..|...|++.+|..+-+..... ++.+..+...+- .++. ..-++|
T Consensus 347 ~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred ccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHH
Confidence 8889999888888776 333 6788999999999999998888776655432 122333333221 1222 133556
Q ss_pred HHHHHHHHHcCCCCC-HhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHH
Q 004480 309 LEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (750)
Q Consensus 309 ~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 387 (750)
..+++.-.+. .|+ ....+.+...+...|..+++..+++.... ..||....+.|...+...+.+.+|++.|.
T Consensus 424 Kkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~------~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 424 KKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI------IFPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh------hccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6666555443 333 23444555566666777777777776655 45677777777777777777777777776
Q ss_pred HHHHC
Q 004480 388 DMLSA 392 (750)
Q Consensus 388 ~m~~~ 392 (750)
..+..
T Consensus 496 ~ALr~ 500 (564)
T KOG1174|consen 496 KALRQ 500 (564)
T ss_pred HHHhc
Confidence 66654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.3e-06 Score=88.09 Aligned_cols=284 Identities=14% Similarity=0.087 Sum_probs=196.1
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcC-----
Q 004480 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKR----- 235 (750)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g----- 235 (750)
+...|++++|++.++.-.. .-++........+..+.+.|+.++|...+..+ |++...|..+..+.+-..
T Consensus 14 l~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 3458999999999987554 33666677778899999999999999987664 666666666777763333
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCccHHHHHHHHHhhc--CChHHHHHHH
Q 004480 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY-MKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVY 312 (750)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~ 312 (750)
+.+....+|+++...- |...+...+.-.+.....+ ..+...+..+...|+++- |+.+-..+. ....-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPsl---F~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSL---FSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchH---HHHHHHHHcChhHHHHHHHHH
Confidence 5677888899887643 3322222222112222233 344556666777786543 333333333 2223334444
Q ss_pred HHHHHc----C----------CCCCHh--hHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccC-HHHHHHHHHHHHh
Q 004480 313 KNMQKL----G----------VMADMA--SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFAD 375 (750)
Q Consensus 313 ~~m~~~----g----------~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~li~~~~~ 375 (750)
...... + -+|... ++.-+...|...|++++|++..+.... ..|+ +..|..-.+.|-+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~------htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE------HTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHH
Confidence 444321 1 123332 345556778899999999999999887 4566 5678888999999
Q ss_pred ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHHhC
Q 004480 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ------CC--NILLQACVEAC 447 (750)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~--~~ll~~~~~~g 447 (750)
.|++++|.+.++.....+.. |...=+-....+.+.|++++|.+++......+..|-.. .| .-...+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988654 88888888999999999999999999998766443221 22 33456889999
Q ss_pred ChHHHHHHHHHHhhc
Q 004480 448 QFDRAFRLFRSWTLS 462 (750)
Q Consensus 448 ~~~~A~~~~~~~~~~ 462 (750)
++..|++.|..+.+.
T Consensus 320 ~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 320 DYGLALKRFHAVLKH 334 (517)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999988877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.3e-05 Score=81.65 Aligned_cols=210 Identities=14% Similarity=0.098 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 004480 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (750)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (750)
..|...+.+.++.. .-+..+|+.|.-. ...|++.-+...|-+-.... +....+|..+--.+.++.+++-|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 45777777766542 3356677766554 55577777777776655442 445667777777788888888888888776
Q ss_pred hhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHH--HHHHHhcHHHHHHHHH
Q 004480 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL--MKACCTDYYRVKALMN 537 (750)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l--i~~~~~~~~~a~~l~~ 537 (750)
.... +-|...|-.. +.--.++.-+...+|.
T Consensus 877 qSLd------------------------------------------------P~nl~~WlG~Ali~eavG~ii~~~~lfa 908 (1238)
T KOG1127|consen 877 QSLD------------------------------------------------PLNLVQWLGEALIPEAVGRIIERLILFA 908 (1238)
T ss_pred hhcC------------------------------------------------chhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5321 1122222111 1101122334444443
Q ss_pred HHH----HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH----------HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004480 538 EMR----TVGLSPNHISWTILIDACGGSGNVEGALQILK----------IMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603 (750)
Q Consensus 538 ~m~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----------~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 603 (750)
.-- ..|--|+..-|-....-...+|+.++-+...+ +... |.+-+.+.|.+.....-+.+....|.
T Consensus 909 Hs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ 987 (1238)
T KOG1127|consen 909 HSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAAL 987 (1238)
T ss_pred hhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHH
Confidence 311 11223444434333333445555444333332 2222 23335677877777777778777777
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHH----HHHHhcCCHHHHHHHH
Q 004480 604 SLFEEMKHY-QIQPNLVTYITLL----RARSRYGSLHEVQQCL 641 (750)
Q Consensus 604 ~~~~~m~~~-g~~p~~~t~~~li----~~~~~~g~~~~~~~a~ 641 (750)
++..+.... ..+-|..+|+.+. +.++..|.++.+..+.
T Consensus 988 ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 988 ELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh
Confidence 777765410 1234555555433 3334456666554443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-06 Score=87.54 Aligned_cols=64 Identities=9% Similarity=-0.042 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
..+|+.+...+...|++++|...|+...+..+ -+..+|..+..++...|++++|.+.|+...+.
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34455555555555555555555555544211 12334444444455555555555555555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-06 Score=85.93 Aligned_cols=203 Identities=10% Similarity=-0.035 Sum_probs=137.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHH--
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-- 299 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~-- 299 (750)
..|..+...|.+.|++++|...|++..+..+ .+...|+.+...+...|++++|...|+...+.... +...|..+-.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4577788889999999999999999988543 35789999999999999999999999999876422 2334433333
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCH
Q 004480 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (750)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~ 379 (750)
...|++++|.+.|+...+.. |+..........+...++.++|...|.+.... ..++...+ .+. ....|+.
T Consensus 143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-----~~~~~~~~-~~~--~~~lg~~ 212 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-----LDKEQWGW-NIV--EFYLGKI 212 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-----CCccccHH-HHH--HHHccCC
Confidence 35589999999999988753 44332223333344567899999999765431 22332222 222 2334555
Q ss_pred HHHHHHHHHHHHC---CC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004480 380 QMALKVKEDMLSA---GV--T-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (750)
Q Consensus 380 ~~a~~~~~~m~~~---g~--~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 438 (750)
.++ +.+..+.+. .+ . .....|..+...+.+.|++++|...|++..+.. +||..-+..
T Consensus 213 ~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 213 SEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred CHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 443 344444421 11 1 124578889999999999999999999998765 345544444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.6e-07 Score=84.60 Aligned_cols=108 Identities=10% Similarity=0.006 Sum_probs=51.5
Q ss_pred hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHH
Q 004480 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFS 604 (750)
Q Consensus 527 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~ 604 (750)
++.+-|...++++...|+. +...|+.+.-+|...+++|-++.-|.+....--.|+ ...|-.+-......|++.-|.+
T Consensus 338 ~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~r 416 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKR 416 (478)
T ss_pred CChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHH
Confidence 3444455555555554443 444455555555555555555555555544322232 2344444444445555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004480 605 LFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636 (750)
Q Consensus 605 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 636 (750)
.|+-....+ .-....+|.|.-.-.+.|++++
T Consensus 417 cfrlaL~~d-~~h~ealnNLavL~~r~G~i~~ 447 (478)
T KOG1129|consen 417 CFRLALTSD-AQHGEALNNLAVLAARSGDILG 447 (478)
T ss_pred HHHHHhccC-cchHHHHHhHHHHHhhcCchHH
Confidence 555554321 1134445555555555555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.9e-05 Score=77.79 Aligned_cols=297 Identities=15% Similarity=0.117 Sum_probs=167.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcC
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 303 (750)
-.+.|+.|.+.|....|.+.-..=.. ...|......+..++.+..-+++|-.+|+++..
T Consensus 618 ~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d------------------- 676 (1636)
T KOG3616|consen 618 GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD------------------- 676 (1636)
T ss_pred cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC-------------------
Confidence 34556778888887777654322111 224556666666666666666777667766542
Q ss_pred ChHHHHHHHHHH---------HHcCCCCCHhhH-HHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHH
Q 004480 304 DLKFTLEVYKNM---------QKLGVMADMASY-NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (750)
Q Consensus 304 ~~~~a~~~~~~m---------~~~g~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~ 373 (750)
+++|++.|+.- .+..++..+++. .....-+...|+++.|..-|-+... .-..+.+.
T Consensus 677 -~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~-------------~~kaieaa 742 (1636)
T KOG3616|consen 677 -FDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-------------LIKAIEAA 742 (1636)
T ss_pred -HHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-------------HHHHHHHH
Confidence 22233322211 001111112111 1223344455666666655544332 12234455
Q ss_pred HhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHH
Q 004480 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (750)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 453 (750)
.....|..|+.+++.+..... -..-|..+.+-|+..|+++.|.++|-+.- .++-.|.+|.+.|+|+.|.
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 677788888888888876532 23446777788888899998888887652 3566788888999999888
Q ss_pred HHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH--hcHHH
Q 004480 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYR 531 (750)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~ 531 (750)
++-.+.... ......|-+-..-+- +.+.+
T Consensus 812 kla~e~~~~-------------------------------------------------e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 812 KLAEECHGP-------------------------------------------------EATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred HHHHHhcCc-------------------------------------------------hhHHHHHHHhHHhHHhhcchhh
Confidence 877654311 112222211111111 13345
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 532 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
|++++-.+.. |+. .|.+|-+.|..+..+++.++-.-.. -..|.-.+..-|-..|++.+|.+-|-+..+
T Consensus 843 aeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 843 AEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred hhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 5555433322 433 3667888888888877776653211 134556666777778888888877766543
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHH
Q 004480 612 YQIQPNLVTYITLLRARSRYGSLHE 636 (750)
Q Consensus 612 ~g~~p~~~t~~~li~~~~~~g~~~~ 636 (750)
|.+-++.|-.++-+++
T Consensus 911 ---------~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 911 ---------FKAAVNMYKASELWED 926 (1636)
T ss_pred ---------HHHHHHHhhhhhhHHH
Confidence 4445555555555554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.9e-06 Score=78.30 Aligned_cols=349 Identities=12% Similarity=0.066 Sum_probs=216.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccch
Q 004480 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (750)
Q Consensus 74 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~ 153 (750)
+.+.+..+++..++++|++++..-.+. .|.+ ...++.+...|-+..++..|-++|+++-. ..|...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~---- 78 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRS------RAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELE---- 78 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--Cccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHH----
Confidence 456667788999999999999998887 4532 23334555558899999999999999987 455332
Q ss_pred hhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHH----HHHHHcCCChHHHHHHhhhCCC--CcchHHHH
Q 004480 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI----VQLCVNKPDVNLAIRYACIVPR--ADILFCNF 227 (750)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~l 227 (750)
-+..+ -+..+.+.+.+.+|+.+...|.+.. ...... ....-..+++..+..+.+..|. +..+.+..
T Consensus 79 qYrlY--~AQSLY~A~i~ADALrV~~~~~D~~------~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~ 150 (459)
T KOG4340|consen 79 QYRLY--QAQSLYKACIYADALRVAFLLLDNP------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINL 150 (459)
T ss_pred HHHHH--HHHHHHHhcccHHHHHHHHHhcCCH------HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccc
Confidence 22222 1223444789999999988776521 112222 2223357788888888888884 34566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHH----HHHHHHHhhcC
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY----VFNSLMNVNAH 303 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~ 303 (750)
.-..-+.|+++.|++-|+...+-+.-....+||.-+..| +.|+++.|++...+++++|++.... .-.-.+.+.
T Consensus 151 gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-- 227 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-- 227 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh--
Confidence 777789999999999999988765445577888877654 6789999999999999988652211 000111100
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHH
Q 004480 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (750)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~ 383 (750)
.+.....+... .=...+|.-...+.+.|+++.|.+.+-.|+-. .....|++|...+.-. --.+++.+..
T Consensus 228 svgNt~~lh~S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR---aE~elDPvTLHN~Al~-n~~~~p~~g~ 296 (459)
T KOG4340|consen 228 SVGNTLVLHQS-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR---AEEELDPVTLHNQALM-NMDARPTEGF 296 (459)
T ss_pred cccchHHHHHH-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCc---ccccCCchhhhHHHHh-cccCCccccH
Confidence 00000111000 01223444445566788888888888777642 2234567776554422 1234455555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH-hCChHHHHHHHHHHh
Q 004480 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE-PNSQCCNILLQACVE-ACQFDRAFRLFRSWT 460 (750)
Q Consensus 384 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~ 460 (750)
+-+..++...+ -...||..++-.||+..-++.|-.++.+-...-.+ .+...|+ +++++.- .-..++|++-+..+.
T Consensus 297 ~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 297 EKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 55666665543 34678888999999999898888887664322111 2333343 3333332 345566665555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00025 Score=74.92 Aligned_cols=507 Identities=11% Similarity=0.086 Sum_probs=253.7
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhH
Q 004480 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (750)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~ 159 (750)
..++.|.+++|+.+|.+..+. + . +.- .|..+|.+++|.++-+.--+..++. ++--+.
T Consensus 809 LAieLgMlEeA~~lYr~ckR~--D-----L---lNK------lyQs~g~w~eA~eiAE~~DRiHLr~-------Tyy~yA 865 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRY--D-----L---LNK------LYQSQGMWSEAFEIAETKDRIHLRN-------TYYNYA 865 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHH--H-----H---HHH------HHHhcccHHHHHHHHhhccceehhh-------hHHHHH
Confidence 334567777777777776544 1 1 222 2678899999888866443322221 222222
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHh----------CCC--------CCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCc
Q 004480 160 NECQRLLDSGEVEMFVGLMEVLEE----------FRL--------PVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD 221 (750)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~----------~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 221 (750)
+ .+-..++.+.|+++|++.-. ... ...+...|.--++.+...|+.+.|+.+|...
T Consensus 866 ~---~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A---- 938 (1416)
T KOG3617|consen 866 K---YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA---- 938 (1416)
T ss_pred H---HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh----
Confidence 2 33347888999988875321 110 0123344555566677788888888887665
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCccHHH
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN--------VTLNIYV 293 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~~~~~~ 293 (750)
.-|.++++..|-.|+.++|-++-++- -|..++-.+.+.|...|++.+|...|.+..... -..+...
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34777777777788888887766542 456677778888999999999998887653210 0122333
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHH------hhhcCCCccCHHHHH
Q 004480 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH------LEAKGVLKLDVFTYS 367 (750)
Q Consensus 294 ~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~g~~~~~~~~~~ 367 (750)
+|..+..-..+.-.|-+.|++.-- . +..-+-.|-+.|.+.+|+++--+-.+ ..++-....|+...+
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~---~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGG---Y-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcch---h-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 333333333344455555554421 1 12234467788888777765322111 000110123555566
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHH
Q 004480 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQ----CCNILLQA 442 (750)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~----~~~~ll~~ 442 (750)
.-...|+...+++.|..++-...+ |.--+..| +..++.-..++-+.|--. .-.|+.. ....+...
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~ 1154 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAEL 1154 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHH
Confidence 666666777777777776654432 22222222 222222222222222111 1123332 34445556
Q ss_pred HHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCC----C----ccccccccCCCCcc
Q 004480 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN----S----HYSSFDKRFSFKPT 514 (750)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~p~ 514 (750)
|.+.|.+..|-+-|-+.-.+ +..|....+.-.+....++.+ . ...+++....++.|
T Consensus 1155 c~qQG~Yh~AtKKfTQAGdK----------------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~ 1218 (1416)
T KOG3617|consen 1155 CLQQGAYHAATKKFTQAGDK----------------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDN 1218 (1416)
T ss_pred HHhccchHHHHHHHhhhhhH----------------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccC
Confidence 77777777666555432111 011110000000000111111 0 01123344455666
Q ss_pred HHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004480 515 TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592 (750)
Q Consensus 515 ~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 592 (750)
..+.--++..|.+ .++.--.+|+....-.+. ...+|.- ..|-+++|-..+.+...++ -....|+.|-.-
T Consensus 1219 pq~mK~I~tFYTKgqafd~LanFY~~cAqiEie-e~q~ydK------a~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~ 1289 (1416)
T KOG3617|consen 1219 PQTMKDIETFYTKGQAFDHLANFYKSCAQIEIE-ELQTYDK------AMGALEEAAKCLLKAEQKN--MSTTGLDALQED 1289 (1416)
T ss_pred hHHHhhhHhhhhcchhHHHHHHHHHHHHHhhHH-HHhhhhH------HhHHHHHHHHHHHHHHhhc--chHHHHHHHHHH
Confidence 6766666666654 233322333222211000 0112211 1244566666666666543 122233433332
Q ss_pred HHHc-----------CCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHH
Q 004480 593 CVRS-----------KRLKQAFSLFEEMKHYQIQPN----LVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDT 657 (750)
Q Consensus 593 ~~~~-----------g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~ 657 (750)
..+. .+..+.+.-...|.+...-|| ...|..||..+.+..++.. |.+.+.+|.++-...|..
T Consensus 1290 ~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~---AyRal~el~~k~p~~~~s 1366 (1416)
T KOG3617|consen 1290 LAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKP---AYRALTELQKKVPNVDLS 1366 (1416)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccH---HHHHHHHHhhcCCccchh
Confidence 2221 233444444445555444443 5578889999988888777 455666887765555544
Q ss_pred HH--HHHHHHHHh
Q 004480 658 YL--KELIEEWCE 668 (750)
Q Consensus 658 ~~--~~li~~~~~ 668 (750)
+| ...++..|+
T Consensus 1367 ~~v~~s~vdkv~~ 1379 (1416)
T KOG3617|consen 1367 TFVETSTVDKVCD 1379 (1416)
T ss_pred ccccHHHHHHHHH
Confidence 33 234444454
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.3e-09 Score=63.83 Aligned_cols=32 Identities=47% Similarity=0.817 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004480 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEM 609 (750)
Q Consensus 578 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (750)
|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00044 Score=72.98 Aligned_cols=479 Identities=10% Similarity=0.028 Sum_probs=264.9
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (750)
+...++.++++.-+......+..-+......++ ...+-+.-.+..++. .++. +...-+-|.
T Consensus 237 w~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~----~~~~~f~~~~~~Ee~-~Lll-li~es~i~R------------- 297 (799)
T KOG4162|consen 237 WKKLSGPKEAIKSYRRALLRSWSLDPLTKARLY----KGFALFLPKSGQEEV-ILLL-LIEESLIPR------------- 297 (799)
T ss_pred hcCCCCchHHHHhhhHHhhcccccchhHHHHHh----hcccccCCCCcHHHH-HHHH-HHHhhcccc-------------
Confidence 446777778888887777765554444333222 222222334555555 2222 222222222
Q ss_pred cCCChHHHHHH---------hhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004480 203 NKPDVNLAIRY---------ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (750)
Q Consensus 203 ~~~~~~~A~~~---------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 273 (750)
.+.+++... ...+..+..+|..|.-++.+.|+++.+-+.|++.... ..-....|+.+...|...|.-.
T Consensus 298 --e~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s 374 (799)
T KOG4162|consen 298 --ENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDS 374 (799)
T ss_pred --ccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccch
Confidence 112222111 1123445577888888888999999999999987653 2244667888888888888888
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHH-hhcC---ChHHHHHHHHHHHH--cC--CCCCHhhHHHHHHHHHHc--------
Q 004480 274 KSRAIYEDLRSQNVTLNIYVFNSLMN-VNAH---DLKFTLEVYKNMQK--LG--VMADMASYNILLKACCLA-------- 337 (750)
Q Consensus 274 ~A~~~~~~m~~~g~~~~~~~~~~ll~-~~~~---~~~~a~~~~~~m~~--~g--~~~~~~~~~~ll~~~~~~-------- 337 (750)
.|+.+++.-......|+..+--.+.. .|.+ ..++++..-.+... .+ -...+..|..+.-+|...
T Consensus 375 ~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s 454 (799)
T KOG4162|consen 375 KAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS 454 (799)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH
Confidence 88888887665433344333332322 3443 33333333333332 11 122334444444444422
Q ss_pred ---CChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004480 338 ---GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414 (750)
Q Consensus 338 ---g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 414 (750)
....++.+.+++..+. +.-.|+...|.++= |+..++++.|.+..++..+.+-.-+...|..+.-.+...+++
T Consensus 455 eR~~~h~kslqale~av~~---d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 455 ERDALHKKSLQALEEAVQF---DPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred HHHHHHHHHHHHHHHHHhc---CCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhh
Confidence 1234556666666552 22345555555554 778888999999999999886677888999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHhhc-----------------ccccccCCCCCCch
Q 004480 415 EQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLS-----------------KTQVALGEDYDGNT 476 (750)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----------------~~~~~~~~~~~~~~ 476 (750)
.+|+.+.+..... .|+ -.....-+..-...++.++++.....+... +.............
T Consensus 530 ~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 530 KEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred HHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence 9999998877653 111 111111111112234444444433332211 00000000000000
Q ss_pred ------hhhhhhhhhhcccccCCCCccCCCccccccccCCCC--ccHH------HHHHHHHHHH--hcHHHHHHHHHHHH
Q 004480 477 ------DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK--PTTT------TYNILMKACC--TDYYRVKALMNEMR 540 (750)
Q Consensus 477 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~------~~~~li~~~~--~~~~~a~~l~~~m~ 540 (750)
..+......-.... .....+...-+. |+.. .|......+. ++.+++...+.+..
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~----------~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSA----------GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS 677 (799)
T ss_pred ccchhhHHHHHHHHhhhhhc----------ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 00000000000000 000001111112 2211 1111122222 34566666666665
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCC
Q 004480 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFS--LFEEMKHYQIQPN 617 (750)
Q Consensus 541 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~ 617 (750)
+. ..-....|......+...|...+|.+.|..... +.|+ ....+++...+.+.|+..-|.. ++.++.+.+ .-+
T Consensus 678 ~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n 753 (799)
T KOG4162|consen 678 KI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLN 753 (799)
T ss_pred hc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCC
Confidence 53 223555677777788889999999999998887 4665 6688899999999998877777 999998753 237
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 618 LVTYITLLRARSRYGSLHEVQQCLAVY 644 (750)
Q Consensus 618 ~~t~~~li~~~~~~g~~~~~~~a~~~~ 644 (750)
...|-.+...+-+.|+.+.|.+++..-
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 899999999999999988766555433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9e-06 Score=72.82 Aligned_cols=200 Identities=12% Similarity=-0.017 Sum_probs=155.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhh
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (750)
.+..-|.-.|...|++..|..-+++.++..+ .+..+|..+...|.+.|..+.|.+-|++..+..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--------------- 99 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA--------------- 99 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---------------
Confidence 3456678889999999999999999988542 346688888899999999999999998887652
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHH
Q 004480 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (750)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~ 381 (750)
+-+..+.|.....+|..|++++|...|++... .....--..+|..+.-+..+.|+.+.
T Consensus 100 -------------------p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~---~P~Y~~~s~t~eN~G~Cal~~gq~~~ 157 (250)
T COG3063 100 -------------------PNNGDVLNNYGAFLCAQGRPEEAMQQFERALA---DPAYGEPSDTLENLGLCALKAGQFDQ 157 (250)
T ss_pred -------------------CCccchhhhhhHHHHhCCChHHHHHHHHHHHh---CCCCCCcchhhhhhHHHHhhcCCchh
Confidence 34567788888888899999999999988775 22233345678888888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
|...|++.++.... ...+.-.+.....+.|++..|..+++.....+. ++..+.-..|..-...|+.+.+-+.=..+..
T Consensus 158 A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 158 AEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999888876432 455667777888888999999988888887764 7888777778877788888887776665544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00018 Score=75.78 Aligned_cols=372 Identities=11% Similarity=0.012 Sum_probs=246.3
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccc
Q 004480 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
.+..|..+.-++...|+++.+.+.|++...... .. ...+......+...|.-..|+.+++........|+..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-----~~---~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-----GE---HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-----hh---HHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 367788888899999999999999999865522 11 1222334445778889999999998887643335433
Q ss_pred ccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC-CCC--cccccHHHHHHHHHc----CCCh-------HHHHHHhh
Q 004480 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR-LPV--KELDEEFRIVQLCVN----KPDV-------NLAIRYAC 215 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~----~~~~-------~~A~~~~~ 215 (750)
..+-...+.|. .+.+.+++++++-.+++... ... -....+..++-+|.. .... .++++.++
T Consensus 394 ---s~~Lmasklc~--e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 394 ---SVLLMASKLCI--ERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred ---hHHHHHHHHHH--hchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 22222233332 23577888888877776511 111 112233334444332 1111 23344444
Q ss_pred hC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC---
Q 004480 216 IV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NV--- 287 (750)
Q Consensus 216 ~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--- 287 (750)
.. |.++.+...+.--|+-.++++.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+..... |.
T Consensus 469 ~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 32 56667777788888999999999999999998766678899999999999999999999998876543 22
Q ss_pred ---------------CccHHHHHHHHHhhc-------------------C------ChHHHHHHHHHH--------HHcC
Q 004480 288 ---------------TLNIYVFNSLMNVNA-------------------H------DLKFTLEVYKNM--------QKLG 319 (750)
Q Consensus 288 ---------------~~~~~~~~~ll~~~~-------------------~------~~~~a~~~~~~m--------~~~g 319 (750)
..-..|+..++..+. | +..++......+ ...|
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 011223333333211 0 111111111111 1111
Q ss_pred ---------CCCCH--------hhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHH
Q 004480 320 ---------VMADM--------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (750)
Q Consensus 320 ---------~~~~~--------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a 382 (750)
+.|.. ..|......+.+.+..++|...+.+...+ .+.....|......+...|.+++|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-----~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-----DPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----chhhHHHHHHhhHHHHHHHhhHHH
Confidence 11111 22334556677788888888777777653 345566777777788899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 004480 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH--LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (750)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (750)
.+.|......++. ++...+++...+.+.|+...|.. ++.++.+.+ +.+...|..+-..+-+.|+.+.|.+.|....
T Consensus 704 ~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 704 KEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 9999998876422 57788999999999999888888 999999876 5578899999999999999999999998765
Q ss_pred h
Q 004480 461 L 461 (750)
Q Consensus 461 ~ 461 (750)
+
T Consensus 782 q 782 (799)
T KOG4162|consen 782 Q 782 (799)
T ss_pred h
Confidence 4
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.71 E-value=6e-05 Score=78.16 Aligned_cols=188 Identities=12% Similarity=0.019 Sum_probs=115.0
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHH---HH
Q 004480 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR---IV 198 (750)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---l~ 198 (750)
.+...|+++++...+.+..+.. |...+ ......-....+...|++++|.+.+++.+... |.+...+.. ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~ 87 (355)
T cd05804 15 LLLLGGERPAAAAKAAAAAQAL--AARAT---ERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGAF 87 (355)
T ss_pred HHHhcCCcchHHHHHHHHHHHh--ccCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHH
Confidence 3566788888888887777642 21111 11111111222334899999999999988754 666544431 11
Q ss_pred HHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004480 199 QLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (750)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 274 (750)
......+....+.+.+... |........+...+...|++++|...+++..+..+ .+...+..+..++...|++++
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred HhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHH
Confidence 1122245555555555432 22223444566788889999999999999888543 346678888888899999999
Q ss_pred HHHHHHHHHhCCC-CccHH--HHHHH--HHhhcCChHHHHHHHHHHHH
Q 004480 275 SRAIYEDLRSQNV-TLNIY--VFNSL--MNVNAHDLKFTLEVYKNMQK 317 (750)
Q Consensus 275 A~~~~~~m~~~g~-~~~~~--~~~~l--l~~~~~~~~~a~~~~~~m~~ 317 (750)
|...+++...... .++.. .|..+ +....|++++|..+|++...
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9999988776432 12221 12122 22344677777777777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-08 Score=62.01 Aligned_cols=34 Identities=26% Similarity=0.572 Sum_probs=31.8
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004480 542 VGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575 (750)
Q Consensus 542 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 575 (750)
+|+.||..|||+||++||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-05 Score=75.59 Aligned_cols=294 Identities=13% Similarity=0.076 Sum_probs=179.1
Q ss_pred chhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHH
Q 004480 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (750)
Q Consensus 58 ~~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~ 137 (750)
.+...+..+|++ -.++..-+..|...|+-..|+.=+...+.. .|+.....+-.+.+ +.++|.++.|..=|+
T Consensus 60 ~yHaAve~dp~~-Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v------llK~Gele~A~~DF~ 130 (504)
T KOG0624|consen 60 HYHAAVEGDPNN-YQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV------LLKQGELEQAEADFD 130 (504)
T ss_pred HHHHHHcCCchh-HHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh------hhhcccHHHHHHHHH
Confidence 366778999999 556667788999999999999999999999 88877666655555 889999999999999
Q ss_pred HHHhcCCCccccccchhhhh---------hHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChH
Q 004480 138 KLNELGVAPLELFDGSGFKL---------LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN 208 (750)
Q Consensus 138 ~~~~~~~~p~~~~~~~~~~~---------l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (750)
..++. .|+.-......+- +..........|+..-|+..+..+++ +.|-+...+..-..+|...|.+.
T Consensus 131 ~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 131 QVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPK 206 (504)
T ss_pred HHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHH
Confidence 99974 4433222111111 11111222336888888888888887 45777777777777777788887
Q ss_pred HHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 209 LAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 209 ~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (750)
.|+.-.... .++...+..+-..+-..|+.+.++....+..+ +.||...+-.. |- .+.+....++.|.+
T Consensus 207 ~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~---YK---klkKv~K~les~e~ 278 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPF---YK---KLKKVVKSLESAEQ 278 (504)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHH---HH---HHHHHHHHHHHHHH
Confidence 776654432 23445666666667777777777777777766 33554322211 11 12222222222221
Q ss_pred CCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHH---HHHHHHHHcCChHHHHHHHHHHHHhhhcCCCcc
Q 004480 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYN---ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (750)
Q Consensus 285 ~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~---~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~ 361 (750)
. ...+++.++++-.+...+.........|+ .+-.++...+++.+|++...++.. +.|
T Consensus 279 ~--------------ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~------~d~ 338 (504)
T KOG0624|consen 279 A--------------IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD------IDP 338 (504)
T ss_pred H--------------HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh------cCc
Confidence 1 01134445555555554433221222222 233344455667777776666665 233
Q ss_pred C-HHHHHHHHHHHHhccCHHHHHHHHHHHHHC
Q 004480 362 D-VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (750)
Q Consensus 362 ~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (750)
| +.++.--..+|.-...+++|+.-|+...+.
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 3 556666666666666777777777666654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00077 Score=68.20 Aligned_cols=186 Identities=10% Similarity=0.038 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHH
Q 004480 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAG---LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (750)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 455 (750)
-+++..+++..+..-..-+..+|..+.+.--..- +.+.....+++++..-..--..+|...+...-+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3445555555443322223444444433222111 2555666666666543222234577777777777778888888
Q ss_pred HHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHH-hcHHHHHH
Q 004480 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYYRVKA 534 (750)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~~~~a~~ 534 (750)
|.+..+.+. ..-++..++++|.-+| ++..-|.+
T Consensus 389 F~kaR~~~r----------------------------------------------~~hhVfVa~A~mEy~cskD~~~Afr 422 (656)
T KOG1914|consen 389 FKKAREDKR----------------------------------------------TRHHVFVAAALMEYYCSKDKETAFR 422 (656)
T ss_pred HHHHhhccC----------------------------------------------CcchhhHHHHHHHHHhcCChhHHHH
Confidence 887765432 1237778888888777 57788888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 535 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
+|+-=.+. ..-+..-....++-+.+.++-..|..+|++....++.|| ...|..+|.-=..-|++..+.++-+++..
T Consensus 423 IFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 423 IFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88754443 222334445567777788888888888888887766665 46888888888888888888888877763
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00012 Score=86.44 Aligned_cols=348 Identities=9% Similarity=-0.059 Sum_probs=161.6
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
...+...+..+...|++.+|...+..+ + ++... ...+......+...|+++.+..+++.+.......+.
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a~~a---~-d~~~~-----~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~-- 409 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHALAA---G-DAQLL-----RDILLQHGWSLFNQGELSLLEECLNALPWEVLLENP-- 409 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHC---C-CHHHH-----HHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCc--
Confidence 344455556666677777666533322 2 11111 122223334455778888888877665321111111
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCc--ccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHH
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVK--ELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~ 228 (750)
.... ..++ .+...|++++|...++.....-...+ ....... .....+.
T Consensus 410 --~l~~--~~a~-~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~-------------------------~~~~~~a 459 (903)
T PRK04841 410 --RLVL--LQAW-LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQA-------------------------EFNALRA 459 (903)
T ss_pred --chHH--HHHH-HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHH-------------------------HHHHHHH
Confidence 1111 1111 12237899999998887654211000 0000000 0111122
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CccH--HHHH--HH
Q 004480 229 REFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNV---TLNI--YVFN--SL 297 (750)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~~--~~~~--~l 297 (750)
..+...|++++|...+++..+.....+ ....+.+...+...|++++|...+++.....- .+.. .++. ..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 334445666666666665544211111 12344444555566666666666665543210 0111 1111 11
Q ss_pred HHhhcCChHHHHHHHHHHHH----cCCC--C-CHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHH
Q 004480 298 MNVNAHDLKFTLEVYKNMQK----LGVM--A-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (750)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~----~g~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li 370 (750)
+....|+++.|...+++... .+.. + ....+..+...+...|++++|...+++................+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 11233566666666555433 1211 1 223344555667778999999988888765432211111223344455
Q ss_pred HHHHhccCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 004480 371 KVFADAKWWQMALKVKEDMLSAGVT-PNTITW-----SSLINACANAGLVEQAMHLFEEMLQAGCEPN---SQCCNILLQ 441 (750)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~ 441 (750)
..+...|++++|.+.+++....... .....+ ...+..+...|+.+.|...+........... ...+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 6677788888888887776532100 000001 0112333446666666666655433211111 001233444
Q ss_pred HHHHhCChHHHHHHHHHH
Q 004480 442 ACVEACQFDRAFRLFRSW 459 (750)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~ 459 (750)
++...|+.++|...+++.
T Consensus 700 ~~~~~g~~~~A~~~l~~a 717 (903)
T PRK04841 700 AQILLGQFDEAEIILEEL 717 (903)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 555556666666655543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.5e-06 Score=82.66 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=63.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhh
Q 004480 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~ 155 (750)
..+..+.+.|++.+|.-+|+.++.. +|.++..+..+++. ....++-..|+..|++.++ +.|+..
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~------qaENE~E~~ai~AL~rcl~--LdP~Nl------ 353 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGIT------QAENENEQNAISALRRCLE--LDPTNL------ 353 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhH------hhhccchHHHHHHHHHHHh--cCCccH------
Confidence 3455667788888888888888887 77766554444444 6666777778888888776 566443
Q ss_pred hhhHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 004480 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (750)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (750)
.++...+..+...|.-.+|++.++..+...
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~ 383 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNK 383 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 445555555666777778888877766533
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00025 Score=83.65 Aligned_cols=374 Identities=11% Similarity=0.057 Sum_probs=223.5
Q ss_pred HHHHHHcCCChHHHHHHhhhCCCCcchH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004480 197 IVQLCVNKPDVNLAIRYACIVPRADILF---CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (750)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 273 (750)
....+...|++.+|..++...++..... ......+...|+++.+..+++.+.......+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 3444556677777776666655443222 2233445566888887777766532111112222333444556789999
Q ss_pred HHHHHHHHHHhCC--C----CccHH----HHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHHcCC
Q 004480 274 KSRAIYEDLRSQN--V----TLNIY----VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADM----ASYNILLKACCLAGN 339 (750)
Q Consensus 274 ~A~~~~~~m~~~g--~----~~~~~----~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~ 339 (750)
++...+......- . .+... .....+....|+++.|...+++....-...+. ...+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 9999998775431 0 11111 11122223558999999999887663111121 344556667788999
Q ss_pred hHHHHHHHHHHHHhhhc-CCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhc
Q 004480 340 TVLAQEIYGEVKHLEAK-GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVT--P-NTITWSSLINACANA 411 (750)
Q Consensus 340 ~~~A~~~~~~~~~~~~~-g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~ 411 (750)
+++|...+++....... |........+..+...+...|++++|...+++.... +.. + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 99999999888754322 111112234566677788999999999998887642 211 1 233455566677788
Q ss_pred CCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhc
Q 004480 412 GLVEQAMHLFEEMLQAG--CEP--NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (750)
Q Consensus 412 g~~~~a~~~~~~m~~~~--~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (750)
|++++|...+++..... ..+ ....+..+...+...|+.++|.+.+.........
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~---------------------- 644 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN---------------------- 644 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----------------------
Confidence 99999999998876531 112 2334444566777899999999999887542110
Q ss_pred ccccCCCCccCCCccccccccCCCCccHHH-H---HHHHHHHHhcHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHc
Q 004480 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTT-Y---NILMKACCTDYYRVKALMNEMRTVGLSPNH---ISWTILIDACGG 560 (750)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~---~~li~~~~~~~~~a~~l~~~m~~~~~~p~~---~~~~~li~~~~~ 560 (750)
.+....... . ........++.+.+...+............ ..+..+..++..
T Consensus 645 ---------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 645 ---------------------GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred ---------------------ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 000000000 0 011111234667777776654432111111 113456677889
Q ss_pred CCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004480 561 SGNVEGALQILKIMRED----GMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (750)
Q Consensus 561 ~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (750)
.|+.++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988653 33332 3456667778899999999999999998643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-06 Score=82.28 Aligned_cols=218 Identities=15% Similarity=0.129 Sum_probs=127.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHH---HHHHHhhcC
Q 004480 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF---NSLMNVNAH 303 (750)
Q Consensus 227 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~ll~~~~~ 303 (750)
+.+++...|+++.++. ++... ..|.......+...+...++-+.++.-+++...........++ .+.+....|
T Consensus 41 ~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 41 QYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 4455555565554332 22221 2344444444444333333444444444443333222111122 222222346
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHH---HHHHHHHHHhccCHH
Q 004480 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQ 380 (750)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~---~~~li~~~~~~g~~~ 380 (750)
++++|++++..- .+.......+..|.+.++++.|.+.++.|.+ +..|... ..+.+..+.-.+.+.
T Consensus 117 ~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~------~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 117 DYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ------IDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC------CSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCcHHHHHHHHHHHHHHhCchhHH
Confidence 666666665432 3566667788899999999999999999986 3344332 222333333345689
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCh-HHHHHHHHHH
Q 004480 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF-DRAFRLFRSW 459 (750)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~ 459 (750)
+|.-+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.. +-+..+...++.+....|+. +.+.+++.++
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 999999997654 56788888999999999999999999999987654 34566777777777777887 6677788776
Q ss_pred hhc
Q 004480 460 TLS 462 (750)
Q Consensus 460 ~~~ 462 (750)
...
T Consensus 263 ~~~ 265 (290)
T PF04733_consen 263 KQS 265 (290)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00013 Score=67.83 Aligned_cols=64 Identities=9% Similarity=-0.003 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004480 547 NHISWTILIDACGGSGNVEGALQILKIMREDGMS-PDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (750)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (750)
...||..++-.||+..-++.|-.++.+--..-.+ .+...|+.|=....-.-..++|++-++.+.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3568888899999999999888887654322111 234444433222222445666666655543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00073 Score=73.12 Aligned_cols=504 Identities=12% Similarity=0.110 Sum_probs=234.5
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccc
Q 004480 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
+...+..+++.+.++|-+..|++.+...-+.-... ..++.+.. -....|.-.-.++++.+++..|+..+++-|
T Consensus 605 tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~v-Vhth~L~p----EwLv~yFg~lsve~s~eclkaml~~NirqN-- 677 (1666)
T KOG0985|consen 605 THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVV-VHTHLLNP----EWLVNYFGSLSVEDSLECLKAMLSANIRQN-- 677 (1666)
T ss_pred ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHH-HHhccCCH----HHHHHHHHhcCHHHHHHHHHHHHHHHHHhh--
Confidence 34457778888999999999998877665431100 00111111 111225566678899999999998877664
Q ss_pred ccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC----------CCCcccccHHHHHHHHHcCCChHHHHHHhhhC--
Q 004480 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR----------LPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-- 217 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-- 217 (750)
+.+.+..+..+.++--.+.-+++|+...... -...++..+..-+++.++.|++.+.+++.+.-
T Consensus 678 -----lQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~ 752 (1666)
T KOG0985|consen 678 -----LQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNC 752 (1666)
T ss_pred -----hHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcccc
Confidence 3445555555554444455556665543221 11345667778888888999999888875441
Q ss_pred ---------------CC--------CcchH-HH------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004480 218 ---------------PR--------ADILF-CN------------FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRT 261 (750)
Q Consensus 218 ---------------~~--------~~~~~-~~------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 261 (750)
++ +..-+ .- .|..|.+.=+....-.+...+....+ +....-+.
T Consensus 753 YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC-~E~~ik~L 831 (1666)
T KOG0985|consen 753 YDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC-SEDFIKNL 831 (1666)
T ss_pred CCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC-cHHHHHHH
Confidence 00 00001 11 12222222222222222222211111 00111111
Q ss_pred HH------------HHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCCCCCHhh
Q 004480 262 II------------DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMAS 326 (750)
Q Consensus 262 li------------~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~---~~~~a~~~~~~m~~~g~~~~~~~ 326 (750)
++ .-..+.+++.--...++...+.|. .|..++|++-..+.. +.+.-+ .-|+.-
T Consensus 832 i~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fL-----------keN~yY 899 (1666)
T KOG0985|consen 832 ILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFL-----------KENPYY 899 (1666)
T ss_pred HHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhc-----------ccCCcc
Confidence 11 112223333334444445555553 455666666655432 221111 111111
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHH-----------HHHHHHHHHCCCC
Q 004480 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA-----------LKVKEDMLSAGVT 395 (750)
Q Consensus 327 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a-----------~~~~~~m~~~g~~ 395 (750)
=+..+.-||...++.-|.-.|++-..-.+-=++......|-...+.+.+..+.+-- .++.++....+++
T Consensus 900 Ds~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~ 979 (1666)
T KOG0985|consen 900 DSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALP 979 (1666)
T ss_pred hhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCC
Confidence 11223334444333332222211000000000111112233333444444443222 2333444433321
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCC
Q 004480 396 --PNTITWSSLINACANAGLVEQAMHLFEEMLQAG--CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471 (750)
Q Consensus 396 --p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 471 (750)
-|....+..+.++...+-..+-.++++++.-.. +.-+...-|.|+-...+ -+..+..+..+++-....+. ...
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~-ia~- 1056 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPD-IAE- 1056 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchh-HHH-
Confidence 244555666777777788888888887775322 11112222222222222 22233333333322111000 000
Q ss_pred CCCch-hhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCCHHH
Q 004480 472 YDGNT-DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHIS 550 (750)
Q Consensus 472 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~~~p~~~~ 550 (750)
.... ...++..... + ....+....+.+|.- .+++++|.++-++. -....
T Consensus 1057 -iai~~~LyEEAF~if--------------------k--kf~~n~~A~~VLie~-i~~ldRA~efAe~~------n~p~v 1106 (1666)
T KOG0985|consen 1057 -IAIENQLYEEAFAIF--------------------K--KFDMNVSAIQVLIEN-IGSLDRAYEFAERC------NEPAV 1106 (1666)
T ss_pred -HHhhhhHHHHHHHHH--------------------H--HhcccHHHHHHHHHH-hhhHHHHHHHHHhh------CChHH
Confidence 0000 0000000000 0 012333333333332 12344444443332 24567
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004480 551 WTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (750)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 630 (750)
|+.+..+-...|.+.+|++-|-+.. |+..|.-+|....+.|.+++-.+++...++..-.|...+ .||-+|++
T Consensus 1107 WsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAk 1178 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHH
Confidence 7788888888888888876665443 667788888888888888888888887777666666554 67788888
Q ss_pred cCCHHHHHH
Q 004480 631 YGSLHEVQQ 639 (750)
Q Consensus 631 ~g~~~~~~~ 639 (750)
.+++.+.++
T Consensus 1179 t~rl~elE~ 1187 (1666)
T KOG0985|consen 1179 TNRLTELEE 1187 (1666)
T ss_pred hchHHHHHH
Confidence 887776544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0021 Score=69.28 Aligned_cols=221 Identities=13% Similarity=0.134 Sum_probs=144.1
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhH
Q 004480 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (750)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~ 159 (750)
-....+++..|+....+..+. .|+.......-+. .+.+.|+.++|..+++.... ..++ +..++.++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~~~a~vLkaL------sl~r~gk~~ea~~~Le~~~~--~~~~---D~~tLq~l~ 84 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNALYAKVLKAL------SLFRLGKGDEALKLLEALYG--LKGT---DDLTLQFLQ 84 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCcHHHHHHHHH------HHHHhcCchhHHHHHhhhcc--CCCC---chHHHHHHH
Confidence 445689999999999999999 4443322212111 25699999999999887775 3443 334666665
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChH----HHHHHhhhCCCCcchHHHHHHHHHhcC
Q 004480 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVREFGKKR 235 (750)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~l~~~~~~~g 235 (750)
.. |.+.++.++|..+|++..+.. |. ......+..+|.+.+++. .|.+++..+|.+...+-++++.+.+..
T Consensus 85 ~~---y~d~~~~d~~~~~Ye~~~~~~--P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 85 NV---YRDLGKLDEAVHLYERANQKY--PS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HH---HHHHhhhhHHHHHHHHHHhhC--Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhc
Confidence 53 445899999999999988755 65 566666777788877775 567788889999888777777666542
Q ss_pred C----------HHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCccHHHHHHHHHh--h
Q 004480 236 D----------LVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYE-DLRSQNVTLNIYVFNSLMNV--N 301 (750)
Q Consensus 236 ~----------~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~ll~~--~ 301 (750)
. ..-|.+.++.+.+.+.+ -+..-...-...+...|++++|++++. ...+.-...+...-+--+.. .
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1 23466777777765411 122222222334567789999999994 33333223333333333332 3
Q ss_pred cCChHHHHHHHHHHHHcC
Q 004480 302 AHDLKFTLEVYKNMQKLG 319 (750)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g 319 (750)
.+++.+..++-.++...|
T Consensus 239 l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKG 256 (932)
T ss_pred hcChHHHHHHHHHHHHhC
Confidence 467888888888887776
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0017 Score=70.46 Aligned_cols=290 Identities=12% Similarity=0.105 Sum_probs=143.8
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhh-hhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHH
Q 004480 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK-LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (750)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~-~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (750)
+-.+.++...+-+.+-+++++++. +.|+.+..+.-+. .++-.+. .-+.....++++++-..+. .
T Consensus 988 S~tVkAfMtadLp~eLIELLEKIv---L~~S~Fse~~nLQnLLiLtAi----kad~trVm~YI~rLdnyDa--------~ 1052 (1666)
T KOG0985|consen 988 SVTVKAFMTADLPNELIELLEKIV---LDNSVFSENRNLQNLLILTAI----KADRTRVMEYINRLDNYDA--------P 1052 (1666)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHh---cCCcccccchhhhhhHHHHHh----hcChHHHHHHHHHhccCCc--------h
Confidence 455667788888999999999887 5666554443333 2222111 2333445555555443221 1
Q ss_pred HHHHHHHcCCChHHHHHHhhhCCCCc--------------------------chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 196 RIVQLCVNKPDVNLAIRYACIVPRAD--------------------------ILFCNFVREFGKKRDLVSALRAYDASKK 249 (750)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 249 (750)
.++..+...+-+++|..+|.++.-+. .+|..+..+-.+.|.+.+|++-|-+.
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 24445555556666666666654333 45555555555555555555544332
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 004480 250 HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNI 329 (750)
Q Consensus 250 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 329 (750)
.|+..|..+++...+.|.|++-.+.+...++..-.|.+.+--.+-.+..+++.+.++.. .-||......
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~ 1199 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQ 1199 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHH
Confidence 23445555666666666666655555544444434443332222222222222222111 1345555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004480 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (750)
Q Consensus 330 ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 409 (750)
+.+-|...|.++.|.-+|..+ .-|..|...+...|++..|.+.-++. .+..||-.+-.+|.
T Consensus 1200 vGdrcf~~~~y~aAkl~y~~v-------------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYSNV-------------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACV 1260 (1666)
T ss_pred HhHHHhhhhhhHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHh
Confidence 555555555555555444322 23455555555566665555544332 14455555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
..+.+..| +|.-..+-....-..-++.-|...|-+++-..+++.
T Consensus 1261 d~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1261 DKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred chhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 44433322 222222222333444555556666666665555543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0021 Score=67.31 Aligned_cols=266 Identities=12% Similarity=0.124 Sum_probs=156.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC--ChhhHHhhhhHHHH-HHHHHhhhhcCchhHHHHHHHHHHhcCCCcc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEG--NVSKFASMLSLEMV-ASGIVKSIREGRIDCVVGVLKKLNELGVAPL 147 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~~~~~~-~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~ 147 (750)
...|...++.+-+..++++|++.|.+--+-+. +..++......-.+ ......+...|+++.|+.-|-++..
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~------ 734 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC------ 734 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh------
Confidence 44566666677777777777777754322211 11111110000000 1122234567777777766644332
Q ss_pred ccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHH
Q 004480 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227 (750)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l 227 (750)
++++..+.....++.+|+.+++.+.+... ..-+|-.+..-|...|+++.|.++|... ..++-.
T Consensus 735 ----------~~kaieaai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~----~~~~da 797 (1636)
T KOG3616|consen 735 ----------LIKAIEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEA----DLFKDA 797 (1636)
T ss_pred ----------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhc----chhHHH
Confidence 33433344447899999999998776442 2345677888899999999999998664 457778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHH
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 307 (750)
|.+|.+.|+|.+|.++-.+.. |++.....|-+-..-+-+.|++.+|.++|-... .|+.. +-|.-..|..+.
T Consensus 798 i~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~a---iqmydk~~~~dd 868 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDKA---IQMYDKHGLDDD 868 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchHH---HHHHHhhCcchH
Confidence 999999999999999887764 344456667777777788899999888875432 12210 001111122333
Q ss_pred HHHHHHHHHHcCCCCC--HhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHH
Q 004480 308 TLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (750)
Q Consensus 308 a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~ 385 (750)
.+++..+- .|+ ..|...+..-|...|++..|..-|-+... |.+-++.|-..+.|++|.++
T Consensus 869 mirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d-------------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 869 MIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-------------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh-------------HHHHHHHhhhhhhHHHHHHH
Confidence 33332221 222 23444556666677777777766654332 44555666666777666655
Q ss_pred H
Q 004480 386 K 386 (750)
Q Consensus 386 ~ 386 (750)
-
T Consensus 931 a 931 (1636)
T KOG3616|consen 931 A 931 (1636)
T ss_pred H
Confidence 4
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00038 Score=73.55 Aligned_cols=385 Identities=11% Similarity=0.084 Sum_probs=196.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC--------Cc-cHHHHHHHHHh
Q 004480 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NV--------TL-NIYVFNSLMNV 300 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~~-~~~~~~~ll~~ 300 (750)
|..-|+.+.|.+-.+-+. +..+|..+.+.|.+..+++-|.-.+..|... |. .+ +...-.+++..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 444566666666555443 2455666666666666666665555554321 10 11 23333444445
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHH
Q 004480 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (750)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~ 380 (750)
..|.+++|+.+|++-.+ |..|=+.|...|.+++|.++-+.-.+ +. =..||.....-+-..++.+
T Consensus 812 eLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR------iH-Lr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR------IH-LRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc------ee-hhhhHHHHHHHHHhhccHH
Confidence 55777788888877765 33344566677888888777653222 11 1235555555566677777
Q ss_pred HHHHHHHHHHHC----------CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004480 381 MALKVKEDMLSA----------GV---------TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (750)
Q Consensus 381 ~a~~~~~~m~~~----------g~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 441 (750)
.|++.|++.... .+ ..|...|......+...|+.+.|+.+|....+ |-++++
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr 946 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR 946 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence 777777653211 00 11223333444444444555555555544432 333344
Q ss_pred HHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHH
Q 004480 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521 (750)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 521 (750)
..|-.|+.++|-++-++ .-|....-.+
T Consensus 947 I~C~qGk~~kAa~iA~e-----------------------------------------------------sgd~AAcYhl 973 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEE-----------------------------------------------------SGDKAACYHL 973 (1416)
T ss_pred eEeeccCchHHHHHHHh-----------------------------------------------------cccHHHHHHH
Confidence 44444444444444332 2233334344
Q ss_pred HHHHHh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---------------HcCCCHHHHHHHHHHHHHCCCCCCHH
Q 004480 522 MKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC---------------GGSGNVEGALQILKIMREDGMSPDVV 584 (750)
Q Consensus 522 i~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~---------------~~~g~~~~A~~~~~~m~~~g~~p~~~ 584 (750)
...|-+ +..+|..+|.+... |...|+.| +...+.-.|-++|++.- .
T Consensus 974 aR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~----- 1036 (1416)
T KOG3617|consen 974 ARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G----- 1036 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----
Confidence 444443 33455555554432 22222221 12223344444544432 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH--------HHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCC
Q 004480 585 AYTTAIKVCVRSKRLKQAFSLFEE--------MKHYQIQP--NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKA 654 (750)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~--------m~~~g~~p--~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p 654 (750)
-+...+..|-++|.+.+|+++-=+ ++...+.| |+...+---+.++...++++ |..++-...
T Consensus 1037 ~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyek---AV~lL~~ar------ 1107 (1416)
T KOG3617|consen 1037 YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEK---AVNLLCLAR------ 1107 (1416)
T ss_pred hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHH---HHHHHHHHH------
Confidence 123445667888888888776322 22233333 56666655556655555444 444433221
Q ss_pred CHHHHHHHHHHHHhhhhhhhhcccccchhhhcccCC-CchhHHHHHHHHHHhhhhhhhhhhhhccccchhhHHHHHH
Q 004480 655 NDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQ-RPQSLLLEKVAVHLQKSAAENLAIDLRGLTKVEARIIVLA 730 (750)
Q Consensus 655 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~~~~~~~~~~~ 730 (750)
.|.--+.-|...+++--.+..+.+...+.+... ....-+++.+...+..-+++..+ -+.+...|++..++.
T Consensus 1108 ---~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~A--tKKfTQAGdKl~AMr 1179 (1416)
T KOG3617|consen 1108 ---EFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAA--TKKFTQAGDKLSAMR 1179 (1416)
T ss_pred ---HHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHH--HHHHhhhhhHHHHHH
Confidence 122223322234555555555555566644333 35677889998888777765554 667777788877765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.9e-05 Score=75.04 Aligned_cols=194 Identities=9% Similarity=-0.036 Sum_probs=130.2
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccc
Q 004480 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
....+..++..+.+.|++++|...+++++.. .|.... .......+...+...|++++|+..++++++. .|+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~---~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~ 104 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPY---AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHP 104 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchh---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCC
Confidence 3677888899999999999999999999988 443221 1223344556688999999999999999984 45433
Q ss_pred ccchhhhhhHHHHHHh-----hccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchH
Q 004480 150 FDGSGFKLLKNECQRL-----LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF 224 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 224 (750)
.....+..+....... ...|++++|.+.++++.... |.+...+..+..... ..... ....
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~---------~~~~ 169 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL---------AGKE 169 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH---------HHHH
Confidence 2111111111111110 12378999999999998755 655443332222111 00000 0122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 225 CNFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 225 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
..+...|.+.|++.+|+..|+...+..+. | ....+..+..++.+.|++++|...++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677889999999999999999875432 3 3568889999999999999999999888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0029 Score=64.28 Aligned_cols=349 Identities=10% Similarity=0.027 Sum_probs=198.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhh
Q 004480 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~ 155 (750)
.-..+....|++++|+.+|..++.. +|. ++++. ++-..+|...|++.+|++=-.+-.+ +.|+.. .-|
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l--~p~--nhvly----Snrsaa~a~~~~~~~al~da~k~~~--l~p~w~---kgy 73 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIML--SPT--NHVLY----SNRSAAYASLGSYEKALKDATKTRR--LNPDWA---KGY 73 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHcc--CCC--ccchh----cchHHHHHHHhhHHHHHHHHHHHHh--cCCchh---hHH
Confidence 3455677789999999999999988 555 22222 4555568899999998877666665 677543 223
Q ss_pred hhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHH---HhhhCCCC--------cchH
Q 004480 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR---YACIVPRA--------DILF 224 (750)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~---~~~~~~~~--------~~~~ 224 (750)
-+..+.+...|++++|+..|.+-++.. |++......+..++.......+... ++.....+ ...|
T Consensus 74 ---~r~Gaa~~~lg~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 74 ---SRKGAALFGLGDYEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred ---HHhHHHHHhcccHHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHH
Confidence 333333333799999999999987755 8777777777776621111100000 01111000 1122
Q ss_pred HHHHHHHHhc----------CCHHHHHHHHHH-----HHhC-------CCCC----------------------CHHHHH
Q 004480 225 CNFVREFGKK----------RDLVSALRAYDA-----SKKH-------LSSP----------------------NMYICR 260 (750)
Q Consensus 225 ~~l~~~~~~~----------g~~~~A~~~~~~-----~~~~-------~~~~----------------------~~~~~~ 260 (750)
..++..+-+. .++..+.-++.. +... +..| -..-..
T Consensus 149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 2222222111 111111111110 0000 0011 123466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHH-hhc--C-------ChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 004480 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNA--H-------DLKFTLEVYKNMQKLGVMADMASYNIL 330 (750)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~-~~~--~-------~~~~a~~~~~~m~~~g~~~~~~~~~~l 330 (750)
.+.++.-+..++..|++-+....+.. ...+|...+. ++. + ..+.+.+.-.++...- ..=...+..+
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~-klIak~~~r~ 304 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY-KLIAKALARL 304 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH-HHHHHHHHHh
Confidence 77887788889999999998887653 3334433333 232 2 2233333333332210 0001122224
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004480 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (750)
Q Consensus 331 l~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (750)
..+|.+.++++.|...|.+...- ..+ -..+.+....++++...+...-.+... ..-...=.+.+.+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte------~Rt-------~~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTE------HRT-------PDLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFK 370 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhh------hcC-------HHHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHh
Confidence 45777778889999888886541 111 112334455566666665555443332 2222233777889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
.|++..|+..|.++++.. +-|...|....-+|.+.|.+..|++--+...+
T Consensus 371 ~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred ccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999999885 55788999999999999999999887665443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-05 Score=78.25 Aligned_cols=148 Identities=9% Similarity=0.005 Sum_probs=73.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHH---HHHHHHhhcC--Ch
Q 004480 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV---FNSLMNVNAH--DL 305 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~ll~~~~~--~~ 305 (750)
+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..|... ..+.+....| .+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCchhH
Confidence 33444555554444321 23334444444555555555555555555433 222221 1122222222 45
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCH-HHHHH
Q 004480 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW-QMALK 384 (750)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~-~~a~~ 384 (750)
.+|..+|+++... ..+++.+.+.+..++...|++++|.+++.+.... -+-+..+...++.+....|+. +.+.+
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----DPNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 5566666665443 3456667777777777777777777777765431 123445555566666666665 55666
Q ss_pred HHHHHHHC
Q 004480 385 VKEDMLSA 392 (750)
Q Consensus 385 ~~~~m~~~ 392 (750)
.+.++...
T Consensus 258 ~l~qL~~~ 265 (290)
T PF04733_consen 258 YLSQLKQS 265 (290)
T ss_dssp HHHHCHHH
T ss_pred HHHHHHHh
Confidence 77776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0022 Score=69.71 Aligned_cols=379 Identities=10% Similarity=0.001 Sum_probs=205.5
Q ss_pred CccccccchhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchh
Q 004480 51 TVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRID 130 (750)
Q Consensus 51 ~~~~~~~~~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~ 130 (750)
........|...++.+|.. ...|..++++|.+.|++..|+..|.++... +|.++.......++ .+..|.+.
T Consensus 577 n~h~aV~~fQsALR~dPkD-~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~------ecd~GkYk 647 (1238)
T KOG1127|consen 577 NLHGAVCEFQSALRTDPKD-YNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVM------ECDNGKYK 647 (1238)
T ss_pred chhhHHHHHHHHhcCCchh-HHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHH------HHHhhhHH
Confidence 3344455577779999999 999999999999999999999999999888 77766554444444 67899999
Q ss_pred HHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC------CCCcccccHHHHHHHHHcC
Q 004480 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR------LPVKELDEEFRIVQLCVNK 204 (750)
Q Consensus 131 ~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~ 204 (750)
+|+..++..+..- .--......+...+++....+.-.|-...|.+.+++.++.- ...++...|..+..+|
T Consensus 648 eald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac--- 723 (1238)
T KOG1127|consen 648 EALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC--- 723 (1238)
T ss_pred HHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH---
Confidence 9999999887531 00000111233344443333333555556666655543211 0012222233333222
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHh----cCCH---H---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-
Q 004480 205 PDVNLAIRYACIVPRADILFCNFVREFGK----KRDL---V---SALRAYDASKKHLSSPNMYICRTIIDVCGI----C- 269 (750)
Q Consensus 205 ~~~~~A~~~~~~~~~~~~~~~~l~~~~~~----~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~- 269 (750)
..|....++ ..-..++..+.. .+.. + -+.+.+-.-.+ ...+..+|..++..|.+ .
T Consensus 724 -------~~f~q~e~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~ 793 (1238)
T KOG1127|consen 724 -------YIFSQEEPS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLG 793 (1238)
T ss_pred -------HHHHHhccc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcC
Confidence 233333322 111112222221 2211 1 11111111111 11223344444433332 1
Q ss_pred ---CCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc-CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHH
Q 004480 270 ---GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345 (750)
Q Consensus 270 ---g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 345 (750)
.+...|+..+...++.. .-+..+||.|=-.-. |++.-+.-.|-.-... .+.+..+|..+...+.+..+++.|..
T Consensus 794 et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVlsg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVLSGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred CcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHhhccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhH
Confidence 12345666776665431 234556665544311 3444444444333332 24456778888888888889999999
Q ss_pred HHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHH--H--HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004480 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM--L--SAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (750)
Q Consensus 346 ~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m--~--~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (750)
.|.....+ .+.|...|.......-..|+.-+...+|..- . ..|-.|+..-|-....-....|+.++-+...
T Consensus 872 af~~~qSL-----dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~ 946 (1238)
T KOG1127|consen 872 AFSSVQSL-----DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTA 946 (1238)
T ss_pred HHHhhhhc-----CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHh
Confidence 99888763 3445666777766677788888888888762 2 1233344333333333344556655444333
Q ss_pred HHHHH---------cCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 004480 422 EEMLQ---------AGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (750)
Q Consensus 422 ~~m~~---------~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (750)
+.+-. .+.+-+...|.+........+....|.++..+.
T Consensus 947 ~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 947 RKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33221 133445667777777777777777776666553
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0002 Score=73.06 Aligned_cols=249 Identities=13% Similarity=0.052 Sum_probs=183.6
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004480 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (750)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 269 (750)
....+..+.+.|++.+|.-.|+.. |.+..+|.-|.......++-..|+..+.+..+..+ -|..+.-+|.-.|...
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNE 366 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhh
Confidence 445677777888888888877764 56668888888888888888889999998887432 3567778888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCccHHHHHHHHH-----------hhc--CChHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHH
Q 004480 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-----------VNA--HDLKFTLEVYKNMQKL-GVMADMASYNILLKACC 335 (750)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~-----------~~~--~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~ 335 (750)
|.-.+|+..++.-+...++ |..+.. ... ..+....++|-++... +..+|+.++..|.-.|.
T Consensus 367 g~q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred hhHHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence 9888999988887654311 000100 001 1234556677666543 44588889999999999
Q ss_pred HcCChHHHHHHHHHHHHhhhcCCCcc-CHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 004480 336 LAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGL 413 (750)
Q Consensus 336 ~~g~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 413 (750)
-.|++++|...|+.... ++| |..+||.|...++...+.++|+..|.+.++. .|+ +.+...|.-+|...|.
T Consensus 442 ls~efdraiDcf~~AL~------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQ------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred cchHHHHHHHHHHHHHh------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhh
Confidence 99999999999999987 555 4567999999999999999999999999986 555 4556667788999999
Q ss_pred HHHHHHHHHHHHH---c------CCCCCHHHHHHHHHHHHHhCChHHHHHHH
Q 004480 414 VEQAMHLFEEMLQ---A------GCEPNSQCCNILLQACVEACQFDRAFRLF 456 (750)
Q Consensus 414 ~~~a~~~~~~m~~---~------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 456 (750)
+++|.+.|-..+. . +..++...|.+|=.++.-.++.|-+.+..
T Consensus 514 ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 514 YKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 9999998876553 2 11234457777766676677776554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0002 Score=71.24 Aligned_cols=200 Identities=10% Similarity=-0.046 Sum_probs=106.8
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCC-ChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCH--HHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP-DVNLAIRYACI----VPRADILFCNFVREFGKKRDL--VSA 240 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~--~~A 240 (750)
.++.++|+.+++++++.. |.+...|..-..++...+ .+++++..++. -|.+..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 355567777777777644 666666665555555544 34555555433 244445555544444444442 455
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 004480 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (750)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~ 320 (750)
+..++++.+... -|..+|+....++.+.|+++++++.++++++.++
T Consensus 128 l~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~--------------------------------- 173 (320)
T PLN02789 128 LEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV--------------------------------- 173 (320)
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC---------------------------------
Confidence 666666665332 3556666666666666666666666666665532
Q ss_pred CCCHhhHHHHHHHHHHc---CC----hHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhc----cCHHHHHHHHHHH
Q 004480 321 MADMASYNILLKACCLA---GN----TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----KWWQMALKVKEDM 389 (750)
Q Consensus 321 ~~~~~~~~~ll~~~~~~---g~----~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m 389 (750)
-|...|+.....+.+. |. .+++.....++... .+-|...|+-+...+... +...+|...+.+.
T Consensus 174 -~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-----~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 174 -RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-----NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred -CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-----CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 2333333333322222 11 23444554444432 234555666666666652 3345566666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHh
Q 004480 390 LSAGVTPNTITWSSLINACAN 410 (750)
Q Consensus 390 ~~~g~~p~~~~~~~li~~~~~ 410 (750)
...+ ..+......|++.|+.
T Consensus 248 ~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 248 LSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred hccc-CCcHHHHHHHHHHHHh
Confidence 5543 2255666667776664
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.1e-05 Score=70.74 Aligned_cols=148 Identities=8% Similarity=0.038 Sum_probs=115.6
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHH
Q 004480 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (750)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (750)
.-.+..|.+.|++..+....+.+.. |.. .+...++.++++..++..+... |++...|..
T Consensus 20 ~~~~~~Y~~~g~~~~v~~~~~~~~~----~~~---------------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~ 78 (198)
T PRK10370 20 FLCVGSYLLSPKWQAVRAEYQRLAD----PLH---------------QFASQQTPEAQLQALQDKIRAN--PQNSEQWAL 78 (198)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHhC----ccc---------------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 3345568899999987666533321 110 0111577788898999888866 999999999
Q ss_pred HHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH-HHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004480 197 IVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE-FGKKRD--LVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (750)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 269 (750)
++..+...|++++|...++.. |++..++..+..+ +.+.|+ .++|.+++++..+.++ -+..++..+...+.+.
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQ 157 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHc
Confidence 999999999999999988774 7777888888886 467777 5999999999998644 3677888888899999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 004480 270 GDYMKSRAIYEDLRSQN 286 (750)
Q Consensus 270 g~~~~A~~~~~~m~~~g 286 (750)
|++++|+..|+.+.+..
T Consensus 158 g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 158 ADYAQAIELWQKVLDLN 174 (198)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 99999999999998764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.8e-05 Score=84.17 Aligned_cols=221 Identities=11% Similarity=0.045 Sum_probs=150.2
Q ss_pred cccccchhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHH
Q 004480 53 HSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCV 132 (750)
Q Consensus 53 ~~~~~~~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A 132 (750)
|.++.+|.+.+..+|++ ...|...+...++.++.++|.+++++++..= ++..-..- ..++..++-.-..-|.-+..
T Consensus 1441 pesaeDferlvrssPNS-Si~WI~YMaf~LelsEiekAR~iaerAL~tI-N~REeeEK--LNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNS-SILWIRYMAFHLELSEIEKARKIAERALKTI-NFREEEEK--LNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred CcCHHHHHHHHhcCCCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhhC-CcchhHHH--HHHHHHHHhHHHhhCcHHHH
Confidence 33445577778899999 8889999999999999999999999988651 12111110 11111122222334677888
Q ss_pred HHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHH
Q 004480 133 VGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212 (750)
Q Consensus 133 ~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (750)
.++|+++-+. ...+..+...+.-|...+.+++|.++|+.|.+.-- .....|...+..+.++++-+.|..
T Consensus 1517 ~kVFeRAcqy---------cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1517 KKVFERACQY---------CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred HHHHHHHHHh---------cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHH
Confidence 8999998873 23455566666667778999999999999987542 445567777777777777777766
Q ss_pred Hhhh----CCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004480 213 YACI----VPR--ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (750)
Q Consensus 213 ~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (750)
++.+ +|. ........+..-.+.|+.+.+..+|+......+ .-...|+..++.=.+.|+.+.+..+|++....+
T Consensus 1586 lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 6554 344 224445556666677777887778877766432 245677777777777777777888887777766
Q ss_pred CCc
Q 004480 287 VTL 289 (750)
Q Consensus 287 ~~~ 289 (750)
+.|
T Consensus 1665 l~~ 1667 (1710)
T KOG1070|consen 1665 LSI 1667 (1710)
T ss_pred CCh
Confidence 544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.6e-05 Score=77.63 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004480 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRA 627 (750)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 627 (750)
.+|-.+..+..+.+++..|.+.|..-.. +.|| ...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+..
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlv 596 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLV 596 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhh
Confidence 3444444445555555555555555544 2443 3455555555555555555555555555544 3334444444444
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004480 628 RSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (750)
Q Consensus 628 ~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 668 (750)
....|.++++.+|..-...|.+.+- |......++....+
T Consensus 597 svdvge~eda~~A~~rll~~~~~~~--d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 597 SVDVGEFEDAIKAYHRLLDLRKKYK--DDEVLLIIVRTVLE 635 (777)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhcc--cchhhHHHHHHHHh
Confidence 4555555554443333333333332 33333444444333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0002 Score=65.90 Aligned_cols=167 Identities=11% Similarity=-0.003 Sum_probs=116.7
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 004480 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (750)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 296 (750)
-|.+..+ ..+...+...|+-+....+....... ...|....+..+....+.|++.+|...|++.....
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~---------- 130 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA---------- 130 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC----------
Confidence 3444445 55666666667777766666654432 22345566667777777778877777777766432
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhc
Q 004480 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (750)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~ 376 (750)
++|...|+.+.-+|.+.|+.++|..-|.+..++ ..-+...+|.+.-.|.-.
T Consensus 131 ------------------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-----~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 131 ------------------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-----APNEPSIANNLGMSLLLR 181 (257)
T ss_pred ------------------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-----ccCCchhhhhHHHHHHHc
Confidence 677888888888888888888888888888774 233455677777778888
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004480 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (750)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (750)
|+++.|..++......+. -|...-..+.......|++++|..+...-.
T Consensus 182 gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 182 GDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 888888888888776643 366667777777788888888887776554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00044 Score=77.51 Aligned_cols=227 Identities=14% Similarity=0.072 Sum_probs=151.2
Q ss_pred hCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccH
Q 004480 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL-SS---PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (750)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 291 (750)
.-|.+...|-..|......++.++|++++++.+..- +. --...|.++++.-...|.-+...++|+++.+. -|.
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDA 1529 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cch
Confidence 345666677777777777777777777777766531 11 01335666666666667777777777777654 232
Q ss_pred H-HHHHHHHhhc--CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccC---HHH
Q 004480 292 Y-VFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFT 365 (750)
Q Consensus 292 ~-~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~---~~~ 365 (750)
. .|..|...|. +..++|-++|+.|.+.- .-....|...+..+.+.++-+.|..++.+..+. -|- ...
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~------lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS------LPKQEHVEF 1602 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh------cchhhhHHH
Confidence 2 2344444443 46777777777776641 246677888888898988888999998887762 233 233
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHH
Q 004480 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS--QCCNILLQAC 443 (750)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~ 443 (750)
..-.+..-.+.|+.+.+..+|+..+...++ -...|+..|+.-.+.|+.+.+..+|++....++.|-. ..|.-.+..=
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 344444556789999999999988876433 5677999999999999999999999999988776633 3455555544
Q ss_pred HHhCChHHHH
Q 004480 444 VEACQFDRAF 453 (750)
Q Consensus 444 ~~~g~~~~A~ 453 (750)
-+.|+-..+.
T Consensus 1682 k~~Gde~~vE 1691 (1710)
T KOG1070|consen 1682 KSHGDEKNVE 1691 (1710)
T ss_pred HhcCchhhHH
Confidence 4445544433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.2e-05 Score=60.91 Aligned_cols=85 Identities=21% Similarity=0.389 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC----H-HHHHHHHHHHHHHHHcCCCCCHHHHH
Q 004480 587 TTAIKVCVRSKRLKQAFSLFEEMKHYQI-QPNLVTYITLLRARSRYGS----L-HEVQQCLAVYQDMWKAGYKANDTYLK 660 (750)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~----~-~~~~~a~~~~~~m~~~g~~p~~~~~~ 660 (750)
...|..|...|++.....+|+.+++.|+ .|+..+|+.++.+.++..- . .++-+++.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455666666888888888888888888 7888888888888776532 1 13556788999999999999999999
Q ss_pred HHHHHHHhhhh
Q 004480 661 ELIEEWCEGVI 671 (750)
Q Consensus 661 ~li~~~~~~~~ 671 (750)
.++..+++|.+
T Consensus 109 ivl~~LlkgSi 119 (120)
T PF08579_consen 109 IVLGSLLKGSI 119 (120)
T ss_pred HHHHHHHHhhc
Confidence 99999988754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00031 Score=78.00 Aligned_cols=236 Identities=9% Similarity=0.053 Sum_probs=120.4
Q ss_pred CCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCC
Q 004480 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (750)
Q Consensus 66 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 145 (750)
+|+. ..++..|+..+...|++++|.++.+..++. .|+.....+..+.+ +.+.+++.++.-+ .+... .
T Consensus 27 ~p~n-~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l------~~q~~~~~~~~lv--~~l~~--~ 93 (906)
T PRK14720 27 SLSK-FKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGIL------SLSRRPLNDSNLL--NLIDS--F 93 (906)
T ss_pred Ccch-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHH------HHhhcchhhhhhh--hhhhh--c
Confidence 4555 778888888888888888888888877777 55555444443333 5666666665555 33321 1
Q ss_pred ccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHH
Q 004480 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (750)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (750)
+. ..++.-...++..+... + .+..++.
T Consensus 94 ~~--------------------~~~~~~ve~~~~~i~~~---~------------------------------~~k~Al~ 120 (906)
T PRK14720 94 SQ--------------------NLKWAIVEHICDKILLY---G------------------------------ENKLALR 120 (906)
T ss_pred cc--------------------ccchhHHHHHHHHHHhh---h------------------------------hhhHHHH
Confidence 10 11221111112222221 1 1223444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----ccHHHHHHHHHh
Q 004480 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-----LNIYVFNSLMNV 300 (750)
Q Consensus 226 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----~~~~~~~~ll~~ 300 (750)
.++.+|-+.|+.++|..+|+++.+.. .-|+.+.|.+...|+.. ++++|.+++.+.+..-+. .-...|.-++..
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhc
Confidence 45555555555555555555555533 12444555555555555 555555555544433110 001112222222
Q ss_pred hcCChHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHH
Q 004480 301 NAHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (750)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~ 374 (750)
-..+++.-..+.+.+... |..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 199 ~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-----~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 199 NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-----NKNNKAREELIRFYK 268 (906)
T ss_pred CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-----CcchhhHHHHHHHHH
Confidence 223444445555555443 333344555566667777777888888888777631 234455666666554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00045 Score=72.44 Aligned_cols=218 Identities=13% Similarity=0.051 Sum_probs=144.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhh
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (750)
..--.+...+...|-...|+.+|++.. .|.-++.+|...|+..+|..+..+..++ +||...|..+....
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334445666667777777777776643 3555666777777777777777666663 56666776666654
Q ss_pred cC--ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCH
Q 004480 302 AH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (750)
Q Consensus 302 ~~--~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~ 379 (750)
.. -+++|.++++..... .-..+.....+.++++++.+.|+.-.++ -+.-..+|-.+..+..+.+++
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-----nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-----NPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-----CccchhHHHhccHHHHHHhhh
Confidence 43 356666666654332 1111222233467788888888776653 233456777777777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 004480 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (750)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (750)
+.|.+.|..-.... +-+...||.+-.+|.+.++..+|...+.+..+.. .-+...|-..+....+.|.+++|.+.++++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 88888887776642 2246678888888888888888888888888776 444555666666677888888888888877
Q ss_pred hhccc
Q 004480 460 TLSKT 464 (750)
Q Consensus 460 ~~~~~ 464 (750)
.....
T Consensus 614 l~~~~ 618 (777)
T KOG1128|consen 614 LDLRK 618 (777)
T ss_pred HHhhh
Confidence 76543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.9e-05 Score=81.48 Aligned_cols=190 Identities=8% Similarity=-0.035 Sum_probs=115.1
Q ss_pred chhhccccCCcc----hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHH
Q 004480 58 ALLSTVRRDLSS----RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV 133 (750)
Q Consensus 58 ~~~~~l~~~p~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 133 (750)
..++..-.+|.. .......+-+.+.+.|++..+.+.+-++++.-. .++.....+-.+.....+.|++++|+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~La~i~~~~g~~~ea~ 106 (694)
T PRK15179 32 DLLEAALAEPGESEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVR-----RYPHTELFQVLVARALEAAHRSDEGL 106 (694)
T ss_pred hHHHHHhcCcccchhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHH-----hccccHHHHHHHHHHHHHcCCcHHHH
Confidence 344555555533 233444555566666776666555555544310 01112344445566677888888888
Q ss_pred HHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHH
Q 004480 134 GVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (750)
Q Consensus 134 ~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (750)
.+|+.+.+ +.|+.. ...+.....+.+.+++++|+..+++++... |++......++.++.+.|++++|..+
T Consensus 107 ~~l~~~~~--~~Pd~~------~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 107 AVWRGIHQ--RFPDSS------EAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred HHHHHHHh--hCCCcH------HHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 88888887 566544 222333334445788888888888888755 77777777777777777777777777
Q ss_pred hhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004480 214 ACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (750)
Q Consensus 214 ~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 263 (750)
|+++ |.+..++.++...+-..|+.++|...|+...+.. .+....|+..+
T Consensus 177 y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 177 FERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 6664 3444666777777777777777777777766532 23344444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00013 Score=80.26 Aligned_cols=136 Identities=3% Similarity=-0.114 Sum_probs=110.8
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhc
Q 004480 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKK 234 (750)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~ 234 (750)
...+....+.|.+++|..+++.+.+.. |+....+..++..+.+.+++++|+..+++ .|.+....+.+...+.+.
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Confidence 333334445899999999999999844 99999999999999999999999887666 477778899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 004480 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (750)
Q Consensus 235 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 298 (750)
|++++|..+|+++...+. -+..++..+..++...|+.++|...|+...+.- .+...-|+..+
T Consensus 168 g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 168 GQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred cchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 999999999999998332 347788899999999999999999999987652 23334444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.004 Score=62.09 Aligned_cols=207 Identities=9% Similarity=0.019 Sum_probs=121.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhhcCCCccC-HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004480 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAK-WWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (750)
Q Consensus 331 l~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 408 (750)
-..+...++.++|+.+..++..+ .|+ ..+|+.--.++...| ++++++..++++.....+ +..+|+.....+
T Consensus 44 ra~l~~~e~serAL~lt~~aI~l------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRL------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 33444456777777777777763 333 334655555566666 567888888887766433 455566555555
Q ss_pred HhcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhh
Q 004480 409 ANAGLV--EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486 (750)
Q Consensus 409 ~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (750)
.+.|.. ++++.+++++.+.. +-+..+|+....++.+.|+++++++.++++...+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~---------------------- 173 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV---------------------- 173 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC----------------------
Confidence 555552 56777777777654 44667777777777777888888888887765432
Q ss_pred cccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHh---------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004480 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT---------DYYRVKALMNEMRTVGLSPNHISWTILIDA 557 (750)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~---------~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 557 (750)
-|...|+..-..+.+ ..++......+++... +-|...|+.+...
T Consensus 174 --------------------------~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~l 226 (320)
T PLN02789 174 --------------------------RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGL 226 (320)
T ss_pred --------------------------CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHH
Confidence 233333332222111 1234455555555532 2245567777777
Q ss_pred HHcC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004480 558 CGGS----GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (750)
Q Consensus 558 ~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 595 (750)
+... ++..+|...+.+..+.+ ..+......|++.|+.
T Consensus 227 l~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 227 FKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 6663 33455777777665532 2245566666666664
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.1e-06 Score=52.63 Aligned_cols=33 Identities=33% Similarity=0.583 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004480 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN 617 (750)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 617 (750)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777766
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00029 Score=68.04 Aligned_cols=187 Identities=11% Similarity=-0.005 Sum_probs=105.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 004480 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (750)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 298 (750)
...+..++..+...|++++|...|+++....+. |. ..++..+..++.+.|++++|...|+++.+.........+
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~---- 108 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY---- 108 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH----
Confidence 356777888888999999999999998875432 11 246777888889999999999999998865321111000
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH--------HHcCChHHHHHHHHHHHHhhhcCCCccCHH-HHHHH
Q 004480 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC--------CLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTI 369 (750)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--------~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~-~~~~l 369 (750)
++..+...+ ...|+.++|.+.|+.+... .|+.. .+..+
T Consensus 109 ---------------------------a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~a~ 155 (235)
T TIGR03302 109 ---------------------------AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR------YPNSEYAPDAK 155 (235)
T ss_pred ---------------------------HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH------CCCChhHHHHH
Confidence 111111111 1235677777777777652 23322 22111
Q ss_pred HHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhC
Q 004480 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPNSQCCNILLQACVEAC 447 (750)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g 447 (750)
... .. .... . ......+...+.+.|++++|...+++..+..- +.....+..+..++.+.|
T Consensus 156 ~~~-~~---~~~~------~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg 217 (235)
T TIGR03302 156 KRM-DY---LRNR------L--------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG 217 (235)
T ss_pred HHH-HH---HHHH------H--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence 110 00 0000 0 00112344556666777777777777665421 123456666667777777
Q ss_pred ChHHHHHHHHHHhhc
Q 004480 448 QFDRAFRLFRSWTLS 462 (750)
Q Consensus 448 ~~~~A~~~~~~~~~~ 462 (750)
++++|...++.+...
T Consensus 218 ~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 218 LKDLAQDAAAVLGAN 232 (235)
T ss_pred CHHHHHHHHHHHHhh
Confidence 777777766665543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0006 Score=62.26 Aligned_cols=184 Identities=14% Similarity=0.059 Sum_probs=125.5
Q ss_pred cCChHHHHHHHHHHHHh---c-CChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhH
Q 004480 84 DGRLEEFAMIVESVVVS---E-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (750)
Q Consensus 84 ~g~~~~A~~~~~~~~~~---~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~ 159 (750)
..+.++..++..+++.- + ..++. +.++..++.+....|+.+.|..++.++..+ . |...-...+..+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~------w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~l 96 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEI------WTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLL 96 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchH------HHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHH
Confidence 34566777777776644 1 22332 344556667778899999999999998874 3 54432223333333
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHH----hhhCCCCcchHHHHHHHHHhcC
Q 004480 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY----ACIVPRADILFCNFVREFGKKR 235 (750)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~l~~~~~~~g 235 (750)
. ..|.+++|+++|+.++..+ |.+...+..-+...-.+|+..+|++. .+.|+.+..+|.-+...|...|
T Consensus 97 E------a~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 97 E------ATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred H------HhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 3 2799999999999999866 88877777777777777877777764 5667888888888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 004480 236 DLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICG---DYMKSRAIYEDLRSQ 285 (750)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 285 (750)
+++.|.-.++++.-. .| +...+..+.+.+--.| +++.|.+.|.+..+.
T Consensus 169 ~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 888888888888763 34 3444445555433332 455666777766654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0024 Score=71.15 Aligned_cols=168 Identities=10% Similarity=0.091 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004480 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333 (750)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 333 (750)
+...+..|+..+...+++++|.++.+...+... .+....+..++....++.+++..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 455667777777677777777777765554421 122333333333222322222111 33333
Q ss_pred HHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004480 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (750)
Q Consensus 334 ~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 413 (750)
.....++.-..-+...+.. ..-+...+-.+..+|-+.|+.+++..+|+++++.. +-|+.+.|.+...|+.. +
T Consensus 93 ~~~~~~~~~ve~~~~~i~~------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILL------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred cccccchhHHHHHHHHHHh------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 4344444333444444443 23345567777777778888888888888887776 33677777777777777 7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q 004480 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (750)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 462 (750)
+++|.+++.+..+. +...+++..+.+++.++...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88888777777553 55556777777777766543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.8e-05 Score=66.98 Aligned_cols=116 Identities=5% Similarity=-0.099 Sum_probs=69.5
Q ss_pred ccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHh
Q 004480 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (750)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (750)
.++.+|+. +..++..+...|++++|...|+.++.. +|...... ..+...+...|++++|+..|+++.+
T Consensus 19 al~~~p~~----~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~------~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 19 LLSVDPET----VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAH------IALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHcCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHH------HHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 35566654 334567777778888888777777777 55543333 3334446777778888888777776
Q ss_pred cCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHH
Q 004480 142 LGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (750)
Q Consensus 142 ~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (750)
+.|+.. ..+...+..+...|++++|+..|++.+... |++...+.....
T Consensus 87 --l~p~~~------~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~~~~~~~~~ 134 (144)
T PRK15359 87 --LDASHP------EPVYQTGVCLKMMGEPGLAREAFQTAIKMS--YADASWSEIRQN 134 (144)
T ss_pred --cCCCCc------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 444332 222222223334677777777777777644 666555544433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00035 Score=64.39 Aligned_cols=162 Identities=10% Similarity=0.013 Sum_probs=113.9
Q ss_pred CCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004480 187 PVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTI 262 (750)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 262 (750)
.|.+... ..+...+...|+-+....+.... +.+.......+....+.|++.+|+..|.+..... ++|..+|+.+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 3666655 66677777778777777765552 4444566678999999999999999999998743 3688899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHH
Q 004480 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342 (750)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 342 (750)
.-+|.+.|++++|..-|.+..+.- .-++..+|.|.-.+.-.|+.+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~----------------------------------~~~p~~~nNlgms~~L~gd~~~ 186 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELA----------------------------------PNEPSIANNLGMSLLLRGDLED 186 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhc----------------------------------cCCchhhhhHHHHHHHcCCHHH
Confidence 999999999999999999887652 2344555556666666666666
Q ss_pred HHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 004480 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (750)
Q Consensus 343 A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 389 (750)
|..++...... -.-|...-..+.......|++++|.++..+-
T Consensus 187 A~~lll~a~l~-----~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 187 AETLLLPAYLS-----PAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHhC-----CCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 66666655541 1225555555666666666666666655443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.016 Score=59.08 Aligned_cols=425 Identities=12% Similarity=0.054 Sum_probs=209.2
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCc-cccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAP-LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p-~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (750)
.+..|++++|+..|.+++. +.| |...|..- .+.++..|++++|++=-.+-++ +.|+=...|...+.++
T Consensus 12 a~s~~d~~~ai~~~t~ai~--l~p~nhvlySnr-------saa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIM--LSPTNHVLYSNR-------SAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAAL 80 (539)
T ss_pred hcccccHHHHHHHHHHHHc--cCCCccchhcch-------HHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHH
Confidence 4688999999999999886 444 33322221 2234447888888876665555 4476667788899999
Q ss_pred HcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHH---HHHHHHHhCC---CCCCHHHHHHHHHHHHhcC-
Q 004480 202 VNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSAL---RAYDASKKHL---SSPNMYICRTIIDVCGICG- 270 (750)
Q Consensus 202 ~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~---~~~~~~~~~~li~~~~~~g- 270 (750)
.-.|++++|+..|.. -|.+...++.+..++.-.....+.. .++......- .......|..++..+-+.-
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 999999999888766 3556677777777761111100000 0111110000 0000112222222221110
Q ss_pred ------CHHHHHHHHHHHHhCCCCccHHHHH-HHHHhhcCChH----HHHHHHHHHHH-cCCCCCHhhHHHHHHHHHHcC
Q 004480 271 ------DYMKSRAIYEDLRSQNVTLNIYVFN-SLMNVNAHDLK----FTLEVYKNMQK-LGVMADMASYNILLKACCLAG 338 (750)
Q Consensus 271 ------~~~~A~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~----~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~g 338 (750)
+........-.+. |+......-. ........... .......++.+ .....-..-...+.++..+..
T Consensus 161 ~l~~~l~d~r~m~a~~~l~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLK--GVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred hhhcccccHHHHHHHHHHh--cCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 0000000000000 0000000000 00000000000 00000000000 000001122345666666777
Q ss_pred ChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhc
Q 004480 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS-------SLINACANA 411 (750)
Q Consensus 339 ~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-------~li~~~~~~ 411 (750)
+++.|.+-+.....+ .-+..-++....+|...|.+.+....-+...+.|-. ...-|+ .+..+|.+.
T Consensus 239 ~f~~a~q~y~~a~el------~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 239 DFETAIQHYAKALEL------ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred hHHHHHHHHHHHHhH------hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 777777777776652 323444555666677777776666666555544422 122222 233345555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhccccc
Q 004480 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491 (750)
Q Consensus 412 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (750)
++++.++..|.+....-..|+.. .+....+++........-
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~------------------------------ 352 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY------------------------------ 352 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh------------------------------
Confidence 66666666666654433232211 112222222222222111
Q ss_pred CCCCccCCCccccccccCCCCccHHH--HHHHHHHHH-hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 004480 492 NTPNFVPNSHYSSFDKRFSFKPTTTT--YNILMKACC-TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568 (750)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~li~~~~-~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 568 (750)
+.|.... -..-...+. +++..|..-+.++++.. +-|...|....-+|.+.|.+..|+
T Consensus 353 -------------------~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL 412 (539)
T KOG0548|consen 353 -------------------INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEAL 412 (539)
T ss_pred -------------------hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHH
Confidence 1222210 011111222 47888999999998875 346778988889999999999998
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004480 569 QILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (750)
Q Consensus 569 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 630 (750)
.=.+..++. .|+ ...|.-=..++.-..++++|.+.|++..+. .|+..-+..-+.-|..
T Consensus 413 ~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 413 KDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 887777764 343 333443344455556788888888888764 4665555444444444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0025 Score=58.77 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004480 529 YYRVKALMNEMRTVGLSPNHISWTILIDACG----GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFS 604 (750)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 604 (750)
.+-|.+.++.|.+. .+..|.+-|..+|. ..+.+.+|.-+|++|.++ ..|+..+.|....++...|++++|..
T Consensus 153 ~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 153 FDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHH
Confidence 34444444444442 23344444444432 233456666666666543 35566666666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004480 605 LFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636 (750)
Q Consensus 605 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 636 (750)
++++..... .-++.|...+|.+-...|+..+
T Consensus 229 lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 229 LLEEALDKD-AKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHHhCCChH
Confidence 666665542 2245555555555555555433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.001 Score=61.59 Aligned_cols=126 Identities=12% Similarity=0.103 Sum_probs=96.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHH-HhccC--HH
Q 004480 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF-ADAKW--WQ 380 (750)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~-~~~g~--~~ 380 (750)
+.+++...++...+.+ +.|...|..+...|...|++++|...|++..++ .+.+...+..+..++ ...|+ .+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 3344555555555543 567888999999999999999999999998873 234666777777764 66676 59
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004480 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (750)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (750)
+|.+++++..+.+.. +..++..+...+.+.|++++|...|+++.+.. +|+..-+.
T Consensus 128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH
Confidence 999999999987644 77888889999999999999999999998874 55554443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.1e-06 Score=50.84 Aligned_cols=33 Identities=27% Similarity=0.639 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004480 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616 (750)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 616 (750)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355555555555555555555555555555554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.6e-06 Score=51.40 Aligned_cols=35 Identities=43% Similarity=0.716 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 004480 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583 (750)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 583 (750)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0044 Score=57.25 Aligned_cols=242 Identities=12% Similarity=0.070 Sum_probs=114.1
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCc-chHHHHHHHHHhcCCHHHHH-HHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD-ILFCNFVREFGKKRDLVSAL-RAYD 245 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~-~~~~ 245 (750)
.|.+..++..-..... .+.+.+.-..+.++|...|.+..-..-...-..++ .+.-.+...+..-++.++-+ ++.+
T Consensus 21 ~Gnyq~~ine~~~~~~---~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E 97 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSS---SKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYE 97 (299)
T ss_pred hhHHHHHHHHHHhhcc---ccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence 4666666554443222 22344445556666666665543222111111111 11222222222233333333 3344
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHh
Q 004480 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMA 325 (750)
Q Consensus 246 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~ 325 (750)
++.......+......-...|.+.|++++|++.... |-..+....+.-+.....+.+.|.+.++.|.+. .+..
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 444433333333333333457778888888877765 222344444444444444556666666666552 2444
Q ss_pred hHHHHHHHHHHc----CChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHH
Q 004480 326 SYNILLKACCLA----GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (750)
Q Consensus 326 ~~~~ll~~~~~~----g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 401 (750)
|.+.|..+|.+. +.+.+|.-+|+++... .+|+..+.+....++...|++++|..++++.+..... +..+.
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k-----~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL 244 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-----TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETL 244 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-----cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHH
Confidence 555455444432 3455566666665431 4556666666666666666666666666666655332 34444
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHH
Q 004480 402 SSLINACANAGLV-EQAMHLFEEML 425 (750)
Q Consensus 402 ~~li~~~~~~g~~-~~a~~~~~~m~ 425 (750)
..+|..-...|.. +-..+.+.++.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Confidence 4444433333333 22333444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0086 Score=60.43 Aligned_cols=178 Identities=14% Similarity=0.060 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHhCC--CCccHHHHHHHHHhhc-CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHH
Q 004480 271 DYMKSRAIYEDLRSQN--VTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347 (750)
Q Consensus 271 ~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 347 (750)
+..++...-++++..+ -.|+...+...+.+.. .........+..+... -.-...-|..-+ .+...|++++|+..+
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~~l 329 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK-RGGLAAQYGRAL-QTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC-ccchHHHHHHHH-HHHHhcccchHHHHH
Confidence 3444555555554322 2366677777776532 2111112222222221 011223343333 455789999999999
Q ss_pred HHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004480 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (750)
Q Consensus 348 ~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (750)
+.+... .+-|...+......+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|++.+|..+++....
T Consensus 330 ~~L~~~-----~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 330 QPLIAA-----QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred HHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 998762 3445555666778899999999999999999986 445 66677788999999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 427 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
.. +-|+..|..|-.+|...|+..++..-..+
T Consensus 403 ~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 403 ND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred cC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 64 66889999999999999999888776655
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.044 Score=59.53 Aligned_cols=217 Identities=12% Similarity=0.119 Sum_probs=146.1
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHH--HHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ--LCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 241 (750)
.+++..|++..+++.+.. |+.. +..+++ ...+.|+.++|..+++.. +.+..+...+-..|...++.++|.
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~~--~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNAL--YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCcH--HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 689999999999998866 5543 333444 456899999999887764 345678888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc----C--------ChHHHH
Q 004480 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA----H--------DLKFTL 309 (750)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~----~--------~~~~a~ 309 (750)
.+|++.... -|+......+..+|.+.+.+.+-.+.=-+|-+. .+-+.+.|=++++... + -..-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 999999874 467777777778888888876544443333332 2334444444444311 1 123467
Q ss_pred HHHHHHHHcC-CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 004480 310 EVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (750)
Q Consensus 310 ~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (750)
+.++.+.+.+ ---+..-...-+..+...|++++|..++..-.. +-....+...-+.-+..+...++|.+..++-.+
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la---~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLA---EKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHH---HhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 7777776654 222223333344556678899999998843221 110233444555677788899999999999999
Q ss_pred HHHCCC
Q 004480 389 MLSAGV 394 (750)
Q Consensus 389 m~~~g~ 394 (750)
+...|.
T Consensus 252 Ll~k~~ 257 (932)
T KOG2053|consen 252 LLEKGN 257 (932)
T ss_pred HHHhCC
Confidence 998864
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.2e-05 Score=50.02 Aligned_cols=33 Identities=33% Similarity=0.740 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 004480 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSP 581 (750)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 581 (750)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00048 Score=60.08 Aligned_cols=113 Identities=9% Similarity=-0.044 Sum_probs=87.6
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 004480 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (750)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (750)
..+|++..+. .|+ .+..+...+...|++++|...|+..... -+.+...|..+..++...|++++|...|+.
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA-----QPWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445555442 233 3556677888999999999999988763 244677888888999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004480 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (750)
Q Consensus 389 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 433 (750)
..... +.+...+..+..++.+.|++++|...|+...+. .|+.
T Consensus 84 Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~ 125 (144)
T PRK15359 84 ALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYAD 125 (144)
T ss_pred HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 99875 347888888999999999999999999998875 4543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00078 Score=67.66 Aligned_cols=132 Identities=11% Similarity=-0.003 Sum_probs=94.6
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 243 (750)
.|.+++|+..++.++... |+++..+...+..+...++.++|.+.++.. |.......++..+|.+.|++.+|++.
T Consensus 319 ~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHH
Confidence 577777777777777644 777777777778888888888887776663 55566677777888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 004480 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL 318 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~ 318 (750)
++...... +-|...|..|..+|...|+..++....-+.. .+.|+++.|...+....+.
T Consensus 397 L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~----------------~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 397 LNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY----------------ALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH----------------HhCCCHHHHHHHHHHHHHh
Confidence 87776643 2467778888888888888777777666554 2356667777666666554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00029 Score=55.72 Aligned_cols=79 Identities=16% Similarity=0.354 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 004480 552 TILIDACGGSGNVEGALQILKIMREDGM-SPDVVAYTTAIKVCVRSK--------RLKQAFSLFEEMKHYQIQPNLVTYI 622 (750)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t~~ 622 (750)
...|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666888888888888888888 888888888888877653 3446788888999888999999999
Q ss_pred HHHHHHHh
Q 004480 623 TLLRARSR 630 (750)
Q Consensus 623 ~li~~~~~ 630 (750)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99888754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.4e-05 Score=47.40 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004480 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (750)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (750)
+||++|.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0015 Score=56.60 Aligned_cols=108 Identities=7% Similarity=-0.008 Sum_probs=84.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004480 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (750)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (750)
+......+...+...|++++|.+.|+.+... .+.+...|..+...+.+.|++++|..+++.....+ +.+...+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 89 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYF 89 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHH
Confidence 3455666777888899999999999888763 23467778888888999999999999999888764 34677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004480 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (750)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 438 (750)
.+...+...|++++|...|+...+. .|+...+..
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 123 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEI--CGENPEYSE 123 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHH
Confidence 8888899999999999999988875 455444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.053 Score=54.10 Aligned_cols=146 Identities=12% Similarity=0.042 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCC
Q 004480 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511 (750)
Q Consensus 432 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (750)
-..+|...+....+..-++.|..+|-+..+.++ +
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~----------------------------------------------~ 429 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI----------------------------------------------V 429 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC----------------------------------------------C
Confidence 345677777777777788888888887765543 3
Q ss_pred CccHHHHHHHHHHHH-hcHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHH
Q 004480 512 KPTTTTYNILMKACC-TDYYRVKALMNEMRTVGLSPNHIS-WTILIDACGGSGNVEGALQILKIMREDGMSPD--VVAYT 587 (750)
Q Consensus 512 ~p~~~~~~~li~~~~-~~~~~a~~l~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~ 587 (750)
.+++..++++|.-+| ++...|..+|+-=... -||... .+-.+..+...++-+.|..+|+..+.+ +.-+ ...|.
T Consensus 430 ~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~ 506 (660)
T COG5107 430 GHHVYIYCAFIEYYATGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYD 506 (660)
T ss_pred CcceeeeHHHHHHHhcCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHH
Confidence 678888888888877 4677888888754443 244433 344556667778888888888865543 1223 56788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004480 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (750)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 628 (750)
.+|.-=..-|++..|..+=++|.+ +.|-..+...+..-|
T Consensus 507 kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 507 KMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 888888888888888888888876 456655555555444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0033 Score=62.21 Aligned_cols=177 Identities=15% Similarity=0.121 Sum_probs=95.2
Q ss_pred cchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcc
Q 004480 68 SSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPL 147 (750)
Q Consensus 68 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~ 147 (750)
+.....|...+..|-..|++++|...|.++.......... ......+......+ +.+++++|++.|+++.+.
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~--~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~----- 103 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK--FEAAKAYEEAANCY-KKGDPDEAIECYEKAIEI----- 103 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHH-----
Confidence 3367888899999999999999999998886653211110 11122333333333 344777777777666641
Q ss_pred ccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcC-CChHHHHHHhhhC-------CC
Q 004480 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK-PDVNLAIRYACIV-------PR 219 (750)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~-------~~ 219 (750)
+...|++..|-.++.. ++..|... |++++|.++|... ..
T Consensus 104 -----------------y~~~G~~~~aA~~~~~----------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~ 150 (282)
T PF14938_consen 104 -----------------YREAGRFSQAAKCLKE----------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGS 150 (282)
T ss_dssp -----------------HHHCT-HHHHHHHHHH----------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-
T ss_pred -----------------HHhcCcHHHHHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 1224555555444433 33334444 5555555554432 10
Q ss_pred ---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 220 ---ADILFCNFVREFGKKRDLVSALRAYDASKKHLSS-----PNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 220 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
....+..++..+.+.|++++|..+|+++...-.. .++. .|-..+-++...||...|...|++....
T Consensus 151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0134556777778888888888888877654322 1121 2222233455567777777777777644
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.073 Score=54.54 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=98.3
Q ss_pred CccHHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 004480 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYT 587 (750)
Q Consensus 512 ~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~ 587 (750)
+|+.. |...|+.--+ -.+.|..+|.+..+.+..+ ++.++++++.-|| .++...|.++|+-=.++ .+| ..--.
T Consensus 364 ~~tLv-~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~ 439 (656)
T KOG1914|consen 364 DLTLV-YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVL 439 (656)
T ss_pred CCcee-hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHH
Confidence 45543 4444443332 3678999999999988877 7778899998776 57889999999986553 344 44457
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004480 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPN--LVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (750)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~ 648 (750)
..++-+...++-.-|..+|++....++.|| ..+|..+|.-=+..|++..+ +++-+++.
T Consensus 440 ~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si---~~lekR~~ 499 (656)
T KOG1914|consen 440 KYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI---LKLEKRRF 499 (656)
T ss_pred HHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH---HHHHHHHH
Confidence 778888899999999999999998877775 68999999999999997764 44545544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00053 Score=59.41 Aligned_cols=97 Identities=7% Similarity=0.018 Sum_probs=63.8
Q ss_pred CcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004480 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (750)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 263 (750)
|.+......++..+...|++++|...++.+ |.+...+..+...+.+.|++++|...|+...+.++ .+...+..+.
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la 92 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAA 92 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHH
Confidence 555555555666666667777776666553 44556677777777777777777777777766432 3455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 004480 264 DVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
..+...|++++|...|+...+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6777777777777777776654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.2e-05 Score=45.91 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004480 549 ISWTILIDACGGSGNVEGALQILKIMREDGM 579 (750)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 579 (750)
+||+++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.051 Score=50.13 Aligned_cols=186 Identities=12% Similarity=0.100 Sum_probs=132.7
Q ss_pred CCHHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHhhcCChHHH
Q 004480 235 RDLVSALRAYDASKK---HL-SSPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFT 308 (750)
Q Consensus 235 g~~~~A~~~~~~~~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~a 308 (750)
.+.++.++++.++.. .| ..++.+ .|..++-+...+|+.+-|...++++..+-.. +.+.-..+++---.+++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 466777777777654 23 445655 4666667777888999999999888766321 22333333333344788899
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 004480 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (750)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (750)
.++|+.+.+.+ +.|.+++---+...-..|+--+|++-+....+. +..|...|.-+...|...|+++.|.-.+++
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-----F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-----FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-----hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 99999998876 566777777777777788877888777776653 678999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q 004480 389 MLSAGVTPNTITWSSLINACANAG---LVEQAMHLFEEMLQA 427 (750)
Q Consensus 389 m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~ 427 (750)
+.-.. +-+...|..+...+.-.| +.+.+.++|.+..+.
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 98763 224455555555544443 566788888888765
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00081 Score=68.58 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=100.1
Q ss_pred CccHHHHHHHHHHHHh--cHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004480 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTV--GLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (750)
Q Consensus 512 ~p~~~~~~~li~~~~~--~~~~a~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 587 (750)
+.+......+++.+.. +.+.+..++...... ...--..|..++|+.|...|..++++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4466667777777664 578888888887765 222234456799999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004480 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (750)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 631 (750)
.||+.+.+.|++..|.++...|...+...+..|+.--+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999888888889988888888887
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00068 Score=60.88 Aligned_cols=88 Identities=24% Similarity=0.311 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------------cCCHHHHHH
Q 004480 546 PNHISWTILIDACG-----GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----------------SKRLKQAFS 604 (750)
Q Consensus 546 p~~~~~~~li~~~~-----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------------~g~~~~A~~ 604 (750)
.|..+|..+++.|. +.|.++=....+..|.+.|+.-|..+|+.|++.+=+ -.+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 34455555555553 234555555555555555555566666665554422 134567888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004480 605 LFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (750)
Q Consensus 605 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 633 (750)
++++|...|+-||..|+..|++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 89999999999999999999998877765
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0021 Score=65.33 Aligned_cols=124 Identities=14% Similarity=0.048 Sum_probs=98.6
Q ss_pred chhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHH
Q 004480 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNF 227 (750)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l 227 (750)
+.+...+++.+.. .++++.|+++|+++.+.. | .....+++.+...++..+|.++... .|.+.......
T Consensus 169 NyLv~~Ll~~l~~---t~~~~~ai~lle~L~~~~--p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Q 240 (395)
T PF09295_consen 169 NYLVDTLLKYLSL---TQRYDEAIELLEKLRERD--P---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQ 240 (395)
T ss_pred hHHHHHHHHHHhh---cccHHHHHHHHHHHHhcC--C---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3444555554433 789999999999998765 4 3456688888888888899887655 36666777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
...|.+.++++.|+.+.+++.+. .|+ ..+|..|..+|.+.|+++.|+-.++.+.-.
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 88899999999999999999884 454 569999999999999999999999987643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0042 Score=54.42 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 004480 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT--ITWSS 403 (750)
Q Consensus 326 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ 403 (750)
.|..++..+ ..++...+...++.+... .+...........+...+...|++++|...|+........|+. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344444444 467777777777777652 1100111233444567777888888888888888876533322 23445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
+...+...|++++|+..++..... ......+....+.|.+.|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 667777888888888888664332 23444566677788888888888888765
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0011 Score=67.53 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=106.4
Q ss_pred CCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCH
Q 004480 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (750)
Q Consensus 319 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 398 (750)
+.+.+......+++.+....+++++..++-........ ...-..|..++++.|.+.|..+.++.++..=...|+-||.
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~--~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC--SYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc--ccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 44667778888888888888899999998888763211 2223345679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 004480 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (750)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 446 (750)
.+|+.||+.+.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999888777888888888877776
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0025 Score=55.82 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=65.8
Q ss_pred hcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcC
Q 004480 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (750)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (750)
..++...+...++.+.+. .|+.. + .....+.....+...|++++|...|+++.... +++.. .
T Consensus 23 ~~~~~~~~~~~~~~l~~~--~~~s~-y--a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l--~--------- 84 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD--YPSSP-Y--AALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPEL--K--------- 84 (145)
T ss_pred HCCCHHHHHHHHHHHHHH--CCCCh-H--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHH--H---------
Confidence 578888888888888874 23221 1 11222333344555888999999888888755 22210 0
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004480 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (750)
Q Consensus 205 ~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (750)
..+...+...+...|++++|+..++..... ......+....++|.+.|++++|...|+.
T Consensus 85 ----------------~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 85 ----------------PLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred ----------------HHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 022333445555556666666655443221 12233444555566666666666666554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0037 Score=63.60 Aligned_cols=125 Identities=13% Similarity=0.128 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004480 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (750)
Q Consensus 326 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 405 (750)
....|+..+...++++.|..+|+++.+ -.|+ ....++..+...++-.+|.+++.+.+... +-+......-.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~------~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa 241 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRE------RDPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQA 241 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHh------cCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344566777788999999999999986 2355 44557788888899999999999999763 33677777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 406 NACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
..|.+.++++.|+.+.+++.+. .| +..+|..|..+|.+.|+++.|+..++.+..
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8899999999999999999986 55 556999999999999999999999987753
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0073 Score=59.76 Aligned_cols=199 Identities=11% Similarity=0.088 Sum_probs=112.9
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (750)
|-..|++++|.+.|.++.+.....+. ....-..+..+...+. .+++++|+..+++ .+..|.
T Consensus 45 fk~~~~~~~A~~ay~kAa~~~~~~~~--~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~----------------A~~~y~ 105 (282)
T PF14938_consen 45 FKLAKDWEKAAEAYEKAADCYEKLGD--KFEAAKAYEEAANCYK-KGDPDEAIECYEK----------------AIEIYR 105 (282)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH-HTTHHHHHHHHHH----------------HHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHH-hhCHHHHHHHHHH----------------HHHHHH
Confidence 67789999999998887653211111 0112222333322222 2355666655554 344566
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 004480 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKK-RDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSR 276 (750)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~ 276 (750)
..|++..|-+ .+..+...|... |++++|++.|++..+. +..- -...+..+...+.+.|++++|.
T Consensus 106 ~~G~~~~aA~----------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~ 175 (282)
T PF14938_consen 106 EAGRFSQAAK----------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI 175 (282)
T ss_dssp HCT-HHHHHH----------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred hcCcHHHHHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 6777776643 456678888888 9999999999887652 2111 1346677888899999999999
Q ss_pred HHHHHHHhCCCC-----ccH--HHHHHHHH-hhcCChHHHHHHHHHHHHc--CCCCC--HhhHHHHHHHHHHc--CChHH
Q 004480 277 AIYEDLRSQNVT-----LNI--YVFNSLMN-VNAHDLKFTLEVYKNMQKL--GVMAD--MASYNILLKACCLA--GNTVL 342 (750)
Q Consensus 277 ~~~~~m~~~g~~-----~~~--~~~~~ll~-~~~~~~~~a~~~~~~m~~~--g~~~~--~~~~~~ll~~~~~~--g~~~~ 342 (750)
++|++....-.. .++ ..+..+|. ...||...|.+.|++.... ++..+ ......|+.++-.. ..+..
T Consensus 176 ~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~ 255 (282)
T PF14938_consen 176 EIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTE 255 (282)
T ss_dssp HHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHH
T ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999998764322 222 12233333 3557888888888887654 22222 33455566665432 23445
Q ss_pred HHHHHHHH
Q 004480 343 AQEIYGEV 350 (750)
Q Consensus 343 A~~~~~~~ 350 (750)
+..-|+.+
T Consensus 256 av~~~d~~ 263 (282)
T PF14938_consen 256 AVAEYDSI 263 (282)
T ss_dssp HCHHHTTS
T ss_pred HHHHHccc
Confidence 55555544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.001 Score=57.13 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=68.2
Q ss_pred hhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 004480 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (750)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~ 230 (750)
++.+-.....+...|++++|.++|+-+.... |.+...|..|+.++-..|++.+|+..|... |+++..+..+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3444444445556899999999999888754 777777888888887778888777777663 6666777777777
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 004480 231 FGKKRDLVSALRAYDASKK 249 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~ 249 (750)
+...|+.+.|++.|+..+.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.027 Score=53.94 Aligned_cols=188 Identities=8% Similarity=-0.024 Sum_probs=117.0
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
...+...+..+.+.|++++|+..|++++...+.+. . .....-.++.++.+.+++++|+..+++.++. .|+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~--~---a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~ 104 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP--Y---SQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPN 104 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh--H---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCc
Confidence 33444566777789999999999999999844332 1 1223346777789999999999999999984 554432
Q ss_pred cchhhhhhHHHHHH--hh---------------ccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHH
Q 004480 151 DGSGFKLLKNECQR--LL---------------DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (750)
Q Consensus 151 ~~~~~~~l~~~~~~--~~---------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (750)
.. +..+..+.+. +. +.....+|+..|+.++..- |+... ..+|...
T Consensus 105 ~~--~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~y--------------a~~A~~r 166 (243)
T PRK10866 105 ID--YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQY--------------TTDATKR 166 (243)
T ss_pred hH--HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChh--------------HHHHHHH
Confidence 11 1122221110 00 1122346777777777644 54422 1122111
Q ss_pred hhhCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004480 214 ACIVPRA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (750)
Q Consensus 214 ~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (750)
...+... ..--..+...|.+.|.+..|..-|+.+.+.-+. ....+...++.+|.+.|..++|......+.
T Consensus 167 l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 167 LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1111000 011224677899999999999999999875332 235577788899999999999988776554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0039 Score=52.43 Aligned_cols=109 Identities=10% Similarity=-0.046 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
+..+..++..+.+.|++++|...|+.++...+ +... .......++..+.+.|+++.|...|+.+... .|+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 74 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP--KSTY---APNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPK 74 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--Cccc---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCc
Confidence 34567888899999999999999999998743 2210 1122234566688999999999999999874 343321
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCccc
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL 191 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 191 (750)
. ..++...+..+...|+.++|...+++++... |++.
T Consensus 75 ~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~ 110 (119)
T TIGR02795 75 A---PDALLKLGMSLQELGDKEKAKATLQQVIKRY--PGSS 110 (119)
T ss_pred c---cHHHHHHHHHHHHhCChHHHHHHHHHHHHHC--cCCh
Confidence 1 1223333334555899999999999998865 5543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0059 Score=55.07 Aligned_cols=89 Identities=19% Similarity=0.257 Sum_probs=66.0
Q ss_pred cCHHHHHHHHHHHHh-----ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHH
Q 004480 361 LDVFTYSTIVKVFAD-----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA----------------GLVEQAMH 419 (750)
Q Consensus 361 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~a~~ 419 (750)
.|..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 466666666666653 355666666777777777777777777777766541 23567899
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhCCh
Q 004480 420 LFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (750)
Q Consensus 420 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 449 (750)
++++|...|+-||..++..+++.+.+.+..
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 999999999999999999999998665543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.012 Score=49.43 Aligned_cols=101 Identities=11% Similarity=-0.048 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 004480 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PNTITWSS 403 (750)
Q Consensus 326 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ 403 (750)
++-.+...+.+.|++++|.+.|..+...... -......+..+..++.+.|++++|...|+.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK--STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4556677788888999999988888762100 0112345666788888889999999999888765322 12456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 004480 404 LINACANAGLVEQAMHLFEEMLQAG 428 (750)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~ 428 (750)
+..++.+.|+.++|...++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7788888889999999998888763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0038 Score=63.82 Aligned_cols=88 Identities=10% Similarity=-0.006 Sum_probs=50.4
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004480 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (750)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 244 (750)
+...|++++|++.|++++... |.+...+..++ .+|.+.|++++|+..+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a------------------------------~~~~~~g~~~eAl~~~ 59 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD--PNNAELYADRA------------------------------QANIKLGNFTEAVADA 59 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH------------------------------HHHHHcCCHHHHHHHH
Confidence 334799999999999988755 65554444444 4444555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 245 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
+++++... .+...|..+..+|...|++++|+..|++..+.
T Consensus 60 ~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 60 NKAIELDP-SLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHhCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 55554321 23444555555555555555555555555543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0049 Score=52.99 Aligned_cols=97 Identities=8% Similarity=0.015 Sum_probs=78.1
Q ss_pred CcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004480 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (750)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 263 (750)
+++......++..+...|++++|.++|+.+ |.+...|..|.-.+-..|++.+|+..|.......+ -|...+-.+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 444555666777788899999999988774 56667888899999999999999999998887553 4677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 004480 264 DVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
.++...|+.+.|.+.|+..+..
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8889999999999999877654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.011 Score=46.88 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=38.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCh
Q 004480 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (750)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 449 (750)
...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 333444444444444444444332 1122334444444444455555555554444432 22223444444444455555
Q ss_pred HHHHHHHHHH
Q 004480 450 DRAFRLFRSW 459 (750)
Q Consensus 450 ~~A~~~~~~~ 459 (750)
++|...+...
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 5555544443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.04 Score=54.22 Aligned_cols=140 Identities=16% Similarity=0.038 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHhhh-cCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHC----CC-CCCH
Q 004480 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GV-TPNT 398 (750)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~ 398 (750)
..|..|.+.|.-.|+++.|....+.-..+.. -|.-......+..+.+++.-.|+++.|.+.|+.-... |- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4567777778888888888876554332211 1211123456778888888889999998888765432 21 1123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhhccc
Q 004480 399 ITWSSLINACANAGLVEQAMHLFEEMLQA-----GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (750)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 464 (750)
.+..+|.++|.-..++++|+.++.+-+.- ...-....|-+|-.+|...|..++|+.+...-.....
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 44567788888788888888887654321 1123456778888888888988988887766554433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.047 Score=49.96 Aligned_cols=214 Identities=12% Similarity=0.084 Sum_probs=105.4
Q ss_pred cCCcc--hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc
Q 004480 65 RDLSS--RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (750)
Q Consensus 65 ~~p~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (750)
|.|+. ....|.....+|....++++|...+.++.+-.-. .-..++....+...+...-....+.+|..+++++...
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn--nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN--NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55543 5678888888999999999999988888754211 1112222333334444444555666666666655432
Q ss_pred ---CCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCC
Q 004480 143 ---GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (750)
Q Consensus 143 ---~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 219 (750)
.-.|+. -..-+..+..+.+.-++++|+++|.+... .....++...|.
T Consensus 101 Y~E~Gspdt------AAmaleKAak~lenv~Pd~AlqlYqrala----------------vve~~dr~~ma~-------- 150 (308)
T KOG1585|consen 101 YVECGSPDT------AAMALEKAAKALENVKPDDALQLYQRALA----------------VVEEDDRDQMAF-------- 150 (308)
T ss_pred HHHhCCcch------HHHHHHHHHHHhhcCCHHHHHHHHHHHHH----------------HHhccchHHHHH--------
Confidence 112211 11112222233334555555555544322 111111222221
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCccH
Q 004480 220 ADILFCNFVREFGKKRDLVSALRAYDASKK----HLSSPNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLNI 291 (750)
Q Consensus 220 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~ 291 (750)
..+......+.+..++.+|-..|.+-.. ..-.++. ..|-..|-.+....++..|...++.--+.+ -..|.
T Consensus 151 --el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~ 228 (308)
T KOG1585|consen 151 --ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS 228 (308)
T ss_pred --HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH
Confidence 2233344555555666665544433211 1111222 234444445556667777777777643332 23455
Q ss_pred HHHHHHHHhhc-CChHHHHHHH
Q 004480 292 YVFNSLMNVNA-HDLKFTLEVY 312 (750)
Q Consensus 292 ~~~~~ll~~~~-~~~~~a~~~~ 312 (750)
.+...||.+|. |+.+.+..+.
T Consensus 229 r~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 229 RSLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhccCCHHHHHHHH
Confidence 66666777655 5666555443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.43 Score=48.16 Aligned_cols=457 Identities=13% Similarity=0.046 Sum_probs=245.6
Q ss_pred HHHhhcCChHHHHHHHHHHHHhc-CChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhh
Q 004480 79 SKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (750)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~ 157 (750)
-.+.+++++.+|+.+|.+..+.- -.|..+.. --..++++.+|. ..+.+.-...+....+. .|+. .+..++..
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lke---Evl~grilnAff-l~nld~Me~~l~~l~~~--~~~s-~~l~LF~~ 86 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKE---EVLGGRILNAFF-LNNLDLMEKQLMELRQQ--FGKS-AYLPLFKA 86 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHH---HHHhhHHHHHHH-HhhHHHHHHHHHHHHHh--cCCc-hHHHHHHH
Confidence 45678899999999999987652 23333321 112245555554 45566666666666653 2221 12233333
Q ss_pred hHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCH
Q 004480 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (750)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~ 237 (750)
+ ..+ +.+.+..|++.+......--.......-.++-. .-++-..-+..+..+...|++
T Consensus 87 L----~~Y-~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~-----------------l~~df~l~~i~a~sLIe~g~f 144 (549)
T PF07079_consen 87 L----VAY-KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ-----------------LFSDFFLDEIEAHSLIETGRF 144 (549)
T ss_pred H----HHH-HhhhHHHHHHHHHHHHhhhcccccchhhhhHHH-----------------HhhHHHHHHHHHHHHHhcCCc
Confidence 3 222 378899998888765543100111110000000 001112334467777888999
Q ss_pred HHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcC--------C-------HHHHHHHHHHHHhC------CCCccHH
Q 004480 238 VSALRAYDASKKHLSS----PNMYICRTIIDVCGICG--------D-------YMKSRAIYEDLRSQ------NVTLNIY 292 (750)
Q Consensus 238 ~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~~~~~ 292 (750)
.+++.+++++...-.+ =+..+|+.++-.+++.= . ++.+.-...+|... .+-|...
T Consensus 145 ~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peee 224 (549)
T PF07079_consen 145 SEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEE 224 (549)
T ss_pred chHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHH
Confidence 9998888887764332 46777777555554431 1 12222222222211 2334444
Q ss_pred HHHHHHHh-hc---CChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHH
Q 004480 293 VFNSLMNV-NA---HDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (750)
Q Consensus 293 ~~~~ll~~-~~---~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~ 367 (750)
.+..++.- +. ....--.+++..-...-+.|+-. +...|+..+.+ +.+++..+-+.+....-...-+.=..++.
T Consensus 225 L~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~ 302 (549)
T PF07079_consen 225 LFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFG 302 (549)
T ss_pred HHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444442 11 12333344555444444556533 33344444444 55555555554443110000011245688
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004480 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW-------SSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCC 436 (750)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-------~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 436 (750)
.++....+.++...|.+.+.-+... .|+...- ..+-+..|. ..+...-+.++......++..- ...
T Consensus 303 ~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLv 379 (549)
T PF07079_consen 303 NLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLV 379 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHH
Confidence 8888889999999999999887765 3333321 122222331 1123334445555554432211 111
Q ss_pred HHHHH---HHHHhCC-hHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCC
Q 004480 437 NILLQ---ACVEACQ-FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512 (750)
Q Consensus 437 ~~ll~---~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (750)
..|+. -+-+.|. -++|.++++.+..-. .
T Consensus 380 h~L~~~Ak~lW~~g~~dekalnLLk~il~ft------------------------------------------------~ 411 (549)
T PF07079_consen 380 HYLVFGAKHLWEIGQCDEKALNLLKLILQFT------------------------------------------------N 411 (549)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhc------------------------------------------------c
Confidence 22222 2334454 788888888766431 1
Q ss_pred ccHHHHHHHHH----HHHh-----cHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH--HHcCCCHHHHHHHHHHHHHC
Q 004480 513 PTTTTYNILMK----ACCT-----DYYRVKALMNEMRTVGLSPNH----ISWTILIDA--CGGSGNVEGALQILKIMRED 577 (750)
Q Consensus 513 p~~~~~~~li~----~~~~-----~~~~a~~l~~~m~~~~~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m~~~ 577 (750)
-|...-|.+.. +|.+ ...+-..+-+-+.+.|+.|-. ..-|.|-++ +...|++.++.-.-..+.+
T Consensus 412 yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~- 490 (549)
T PF07079_consen 412 YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK- 490 (549)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-
Confidence 23333333222 2322 234555555666677887743 344555544 4678999999887777766
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004480 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL 624 (750)
Q Consensus 578 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 624 (750)
+.|++.+|..+.-......++++|..+++.+ .|+..++++=
T Consensus 491 -iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 491 -IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred -hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 6899999999999888999999999999876 6777776653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0018 Score=47.39 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=47.4
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc
Q 004480 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (750)
.++..+.+.|++++|+..|+++++. .|.....+.. +...+...|++++|+..|+++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~------lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYL------LGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHH------HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4577889999999999999999999 5665544444 444488999999999999999874
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.039 Score=51.46 Aligned_cols=185 Identities=10% Similarity=-0.007 Sum_probs=106.0
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCc
Q 004480 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (750)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p 146 (750)
|+.+...+...+..+...|++++|+..|+.+....+... ....+.-.++.++.+.|+++.|...+++.++. .|
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-----~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP 73 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-----YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YP 73 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---T
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CC
Confidence 334456667788888999999999999999998843211 12344456777889999999999999999985 44
Q ss_pred cccccchhhhhhHHHHHH----------hhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh
Q 004480 147 LELFDGSGFKLLKNECQR----------LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI 216 (750)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 216 (750)
+..... ...+..+.+. ..+.+...+|+..|+.++..- |++.. ..+|......
T Consensus 74 ~~~~~~--~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y--------------~~~A~~~l~~ 135 (203)
T PF13525_consen 74 NSPKAD--YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEY--------------AEEAKKRLAE 135 (203)
T ss_dssp T-TTHH--HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTT--------------HHHHHHHHHH
T ss_pred CCcchh--hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchH--------------HHHHHHHHHH
Confidence 433111 1111211111 112344557777777777644 54432 1222221111
Q ss_pred CCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 004480 217 VPRA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSR 276 (750)
Q Consensus 217 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 276 (750)
+... ..--..++..|.+.|.+..|..-++.+++.-+.. ...+...++.+|.+.|..+.+.
T Consensus 136 l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 136 LRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 1000 0112236778999999999999999988753221 1236677778888888877443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.015 Score=57.22 Aligned_cols=129 Identities=12% Similarity=0.104 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCccHHHHHHHHHhh-cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 004480 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVN-AHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (750)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~ll~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 334 (750)
.+|-.+++...+.+..+.|..+|.+..+.+ +..+++...++|..+ .++.+.|..+|+...+. +..+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 356667777777777777777777776543 335555555666554 34555566666666554 345566666777777
Q ss_pred HHcCChHHHHHHHHHHHHhhhcCCCccCH---HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 004480 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDV---FTYSTIVKVFADAKWWQMALKVKEDMLS 391 (750)
Q Consensus 335 ~~~g~~~~A~~~~~~~~~~~~~g~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (750)
.+.++.+.|..+|+..... +.++. ..|...+..=.+.|+++.+.++.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-----l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-----LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-----SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766541 22221 3555555555556666666666655554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.012 Score=46.58 Aligned_cols=95 Identities=20% Similarity=0.149 Sum_probs=73.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004480 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (750)
Q Consensus 327 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (750)
+..+...+...|++++|...++.+.+. .+.+...+..+...+...+++++|.+.++...... +.+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHH
Confidence 455667778889999999999888762 12334667778888888899999999999888764 334567788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 004480 407 ACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~ 427 (750)
.+...|+++.|...+....+.
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHhHHHHHHHHHHHHcc
Confidence 888999999999988887653
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0047 Score=58.31 Aligned_cols=97 Identities=9% Similarity=0.041 Sum_probs=69.6
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHH
Q 004480 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (750)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 239 (750)
.+.+.+++.+|+..|.+.+... |.+..+|..-..+|.+.|.++.|++-.+.. |....+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3444789999999999988844 888888888888888888777777765543 4445677777778888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHH
Q 004480 240 ALRAYDASKKHLSSPNMYICRTIID 264 (750)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~li~ 264 (750)
|++.|.+.++ +.|+-.+|-.=+.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 8877777776 4565544444333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.019 Score=56.58 Aligned_cols=145 Identities=10% Similarity=0.074 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCc
Q 004480 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (750)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 513 (750)
.+|..++...-+.+..+.|..+|.+....+ .+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~----------------------------------------------~~~~ 35 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK----------------------------------------------RCTY 35 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------------------------------------CS-T
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC----------------------------------------------CCCH
Confidence 356677777777777788888887765322 1345
Q ss_pred cHHHHHHHHHHHH-hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH---HHHHHH
Q 004480 514 TTTTYNILMKACC-TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV---VAYTTA 589 (750)
Q Consensus 514 ~~~~~~~li~~~~-~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l 589 (750)
++....+.+.-++ ++.+.|..+|+...+. +..+...|...++.+.+.|+.+.|..+|++.... +.++. ..|...
T Consensus 36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~ 113 (280)
T PF05843_consen 36 HVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKF 113 (280)
T ss_dssp HHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHH
Confidence 6666666666654 4566677787777765 4456666777777777778888888888877754 22222 377777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004480 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (750)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 628 (750)
+.-=.+.|+++.+.++.+++.+ ..|+...+..+++-|
T Consensus 114 i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 114 IEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 7777777787777777777776 345544444444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0027 Score=48.57 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHh
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (750)
...+..++..+...|++++|+..|+++++.. ....-........+.++...+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6788999999999999999999999998772 111112223356677888889999999999999999875
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.57 Score=49.72 Aligned_cols=135 Identities=10% Similarity=0.027 Sum_probs=85.2
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (750)
+.+.|+|-.+.++++.-- -..|.......++.+.. .+++...+++|.++|..-.. ....+..+.
T Consensus 770 r~klgDwfrV~qL~r~g~---~d~dD~~~e~A~r~ig~---~fa~~~~We~A~~yY~~~~~----------~e~~~ecly 833 (1189)
T KOG2041|consen 770 RKKLGDWFRVYQLIRNGG---SDDDDEGKEDAFRNIGE---TFAEMMEWEEAAKYYSYCGD----------TENQIECLY 833 (1189)
T ss_pred HHhhhhHHHHHHHHHccC---CCcchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccc----------hHhHHHHHH
Confidence 445666666555554221 12222212222333322 33446677888888775221 234566666
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
+...+++-+.+...+|.+....-.+.+++.+.|.-++|.+.|-+... |. +-+..|...++|.+|.++-+..
T Consensus 834 ~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 834 RLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777788888899999999999999999999999988865432 32 2345677778888888776643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0019 Score=50.34 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=36.2
Q ss_pred cCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004480 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416 (750)
Q Consensus 337 ~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 416 (750)
.|+++.|..+++++.+.... .++...+..+..+|.+.|++++|..+++. ...+. .+......+..+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~---~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT---NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG---THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHH
Confidence 35555555555555552100 01223333355555555555555555555 21111 112222333555555555555
Q ss_pred HHHHHHH
Q 004480 417 AMHLFEE 423 (750)
Q Consensus 417 a~~~~~~ 423 (750)
|++.|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.38 Score=50.49 Aligned_cols=180 Identities=14% Similarity=0.165 Sum_probs=100.4
Q ss_pred HHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChH
Q 004480 229 REFGKKR--DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLK 306 (750)
Q Consensus 229 ~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 306 (750)
++|.+.+ .+-+.+--++++.++|-.|+... +...|+-.|++.+|-++|.+- |.-.
T Consensus 606 kAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~--------------------G~en 662 (1081)
T KOG1538|consen 606 KAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS--------------------GHEN 662 (1081)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc--------------------Cchh
Confidence 3444433 34455556778888888787664 344566788899988888753 2234
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHH---
Q 004480 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL--- 383 (750)
Q Consensus 307 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~--- 383 (750)
.|+++|.+|.-. .+..-+...|..++-..+.++-.+...+- -+| .+....+...|+.++|.
T Consensus 663 RAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WAr~~-keP-----kaAAEmLiSaGe~~KAi~i~ 726 (1081)
T KOG1538|consen 663 RALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWARNI-KEP-----KAAAEMLISAGEHVKAIEIC 726 (1081)
T ss_pred hHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHhhhc-CCc-----HHHHHHhhcccchhhhhhhh
Confidence 566666555421 13334445555554444443322211110 011 11222233344444443
Q ss_pred ----------HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHH
Q 004480 384 ----------KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (750)
Q Consensus 384 ----------~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 453 (750)
++-.++- ..+..+...+...+.+...+..|-++|..|-+ ...+++.....++|++|.
T Consensus 727 ~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAF 793 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAF 793 (1081)
T ss_pred hcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhH
Confidence 3333322 12445555566666677778888888888843 345677788889999999
Q ss_pred HHHHHHh
Q 004480 454 RLFRSWT 460 (750)
Q Consensus 454 ~~~~~~~ 460 (750)
++-++..
T Consensus 794 alAe~hP 800 (1081)
T KOG1538|consen 794 ALAEKHP 800 (1081)
T ss_pred hhhhhCc
Confidence 8877644
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.55 Score=46.89 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=85.3
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004480 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (750)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (750)
..+.+..|.-+...|+...|.++..+.. -||..-|-..+.+|+..++|++-.++-.. +-++..|..
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk--------v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyep 242 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK--------VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEP 242 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC--------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHH
Confidence 3456666777888899888888877664 37888899999999999999887775432 124477889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
++.+|.+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-.+
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999888873 235567788899999988776443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.004 Score=46.23 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcC-chhHHHHHHHHHHhc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL 142 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~l~~~~~~ 142 (750)
+..|..++..+...|++++|+..|+++++. +|+.... +.++...+...| ++++|++.++++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~------~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEA------YYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHH------HHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHH------HHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567889999999999999999999999999 6765544 344555588999 799999999999873
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.022 Score=54.28 Aligned_cols=113 Identities=10% Similarity=0.138 Sum_probs=80.9
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHH
Q 004480 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (750)
Q Consensus 59 ~~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (750)
+...++.+|++ ..-|..|+..|...|++++|...|..+.+. .|++...... +...+..-.-...-.++..+|++
T Consensus 145 Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g---~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 145 LETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLG---LAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHH---HHHHHHHhcCCcccHHHHHHHHH
Confidence 54558999999 999999999999999999999999999998 4444333222 22222223344455589999999
Q ss_pred HHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 004480 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (750)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (750)
+++ ..|++. .....|.. .+...|++.+|...++.|++..
T Consensus 219 al~--~D~~~i---ral~lLA~---~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 219 ALA--LDPANI---RALSLLAF---AAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHh--cCCccH---HHHHHHHH---HHHHcccHHHHHHHHHHHHhcC
Confidence 997 566554 23333333 3444899999999999999865
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.029 Score=46.54 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=67.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchh
Q 004480 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (750)
Q Consensus 75 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~ 154 (750)
..+..++-..|+.++|+.+|++.++.|.+... ....+..+.+.+...|++++|+.+|++.... .|+..... .
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~-~ 76 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGAD-----RRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNA-A 76 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccH-H
Confidence 45667777889999999999999998755432 1345557778889999999999999998874 34322111 1
Q ss_pred hhhhHHHHHHhhccCcHHHHHHHHHHHHh
Q 004480 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (750)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (750)
+..+.. ..+...|+.++|++.+-..+.
T Consensus 77 l~~f~A--l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 77 LRVFLA--LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHH--HHHHHCCCHHHHHHHHHHHHH
Confidence 222211 134447999999988766554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0026 Score=49.52 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=56.8
Q ss_pred ccCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHH
Q 004480 376 AKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (750)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 454 (750)
.|+++.|+.+++++.+.... ++...+-.+..++.+.|++++|..+++. .+.+ ..+....-.+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57889999999999876432 2444555588899999999999999988 3222 1223444455778889999999998
Q ss_pred HHHH
Q 004480 455 LFRS 458 (750)
Q Consensus 455 ~~~~ 458 (750)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.011 Score=55.92 Aligned_cols=83 Identities=14% Similarity=-0.031 Sum_probs=45.8
Q ss_pred hhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHc
Q 004480 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (750)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (750)
.+.++|.+|+..|.++++ +.|...++ +-+-++.+.+.|+++.|++-.+..+..+ |.....|..|+.+|..
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVy------ycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVY------YCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchH------HHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHc
Confidence 356666666666666665 44433311 1122233344566666666666655533 5555666666666666
Q ss_pred CCChHHHHHHhhh
Q 004480 204 KPDVNLAIRYACI 216 (750)
Q Consensus 204 ~~~~~~A~~~~~~ 216 (750)
.|++.+|++.|++
T Consensus 162 ~gk~~~A~~aykK 174 (304)
T KOG0553|consen 162 LGKYEEAIEAYKK 174 (304)
T ss_pred cCcHHHHHHHHHh
Confidence 6666666666554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.45 Score=45.61 Aligned_cols=60 Identities=8% Similarity=-0.023 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMY--ICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 226 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
.....+...|++++|.+.|+.+....+.+... ..-.+..++.+.+++++|...|++..+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34445556778888888888877644332211 2234556677778888888888877765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.21 Score=43.78 Aligned_cols=125 Identities=15% Similarity=0.117 Sum_probs=65.5
Q ss_pred HHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHH
Q 004480 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (750)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (750)
.+..++...|++.+|...|++... |+-.++. ..++.........+++..|...++.+-+.+..-..
T Consensus 94 rLa~al~elGr~~EA~~hy~qals-G~fA~d~------a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~------- 159 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALS-GIFAHDA------AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS------- 159 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhc-cccCCCH------HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC-------
Confidence 345556677788888887777776 4433222 22333333344467777777777776654411112
Q ss_pred HHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004480 198 VQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277 (750)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 277 (750)
+.....+...|...|++.+|+..|+.....-+.|....|- ...+.++|+.+++..
T Consensus 160 -----------------------pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea~a 214 (251)
T COG4700 160 -----------------------PDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREANA 214 (251)
T ss_pred -----------------------CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHHHH
Confidence 2333444555666666666666666666543323333222 222345565555544
Q ss_pred HHHH
Q 004480 278 IYED 281 (750)
Q Consensus 278 ~~~~ 281 (750)
-+.+
T Consensus 215 q~~~ 218 (251)
T COG4700 215 QYVA 218 (251)
T ss_pred HHHH
Confidence 3333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.047 Score=55.89 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=72.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004480 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (750)
Q Consensus 331 l~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (750)
...+...|++++|...|+++.++ -+.+...|..+..+|.+.|++++|+..+++.+.... .+...|..+..+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL-----DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHH
Confidence 34556778888888888887763 233556677777788888888888888888877642 356677778888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004480 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (750)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 440 (750)
.|++++|...|++..+. .|+.......+
T Consensus 83 lg~~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88888888888888765 44444333333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.038 Score=49.87 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=51.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
..+..++..+...|++++|+..|++.......+ ...+|..+...+...|++++|+..++.....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456777888888899999999999987653332 2357888888999999999999999887754
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.068 Score=48.39 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=65.3
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCcc-CHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004480 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (750)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (750)
...+..+...+...|++++|...|++......+ .+ ....+..+...+.+.|++++|...+.+...... -+...+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 110 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALN 110 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHH
Confidence 445777788888999999999999988763211 11 145788888999999999999999999987632 2566677
Q ss_pred HHHHHHHhcCC
Q 004480 403 SLINACANAGL 413 (750)
Q Consensus 403 ~li~~~~~~g~ 413 (750)
.+...+...|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 77777777766
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.16 Score=46.01 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004480 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (750)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 440 (750)
...+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44577777788889999999999999886543322 4678888889999999999999999888753 23455666666
Q ss_pred HHHHHhCChHHHHH
Q 004480 441 QACVEACQFDRAFR 454 (750)
Q Consensus 441 ~~~~~~g~~~~A~~ 454 (750)
..+...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 67777776555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.022 Score=49.32 Aligned_cols=94 Identities=10% Similarity=0.042 Sum_probs=67.8
Q ss_pred hhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHH
Q 004480 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVR 229 (750)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~ 229 (750)
.++.+-..+..+-..|++++|..+|.-+...+ +.+..++..|+.++-..+++++|+..|... +.++..+.....
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 34444444445556899999999999888755 666777777888887788888888776552 455566677777
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 004480 230 EFGKKRDLVSALRAYDASKK 249 (750)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~~ 249 (750)
.|...|+.+.|+..|+...+
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 77777888888877777765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.056 Score=52.23 Aligned_cols=105 Identities=9% Similarity=-0.023 Sum_probs=75.7
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
...|......+.+.|++++|+..|+.++...+ +.. ....+.-.++..|...|++++|...|+.+.+. .|+...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP--~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~ 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYP--DST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--CCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcc
Confidence 45566666666778999999999999999944 321 11233346677788999999999999999974 444332
Q ss_pred cchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (750)
....+.+....+...|+.++|...|+.++...
T Consensus 216 ---~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 216 ---AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred ---hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 33444444445556899999999999988755
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.81 Score=45.11 Aligned_cols=60 Identities=8% Similarity=-0.058 Sum_probs=42.6
Q ss_pred HhhcCChHHHHHHHHHHHHhc--CChhhHHhhhhHHHHHHHHHhhhhcC-chhHHHHHHHHHHhc
Q 004480 81 LAKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL 142 (750)
Q Consensus 81 ~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~l~~~~~~ 142 (750)
..++|+++-|..++.++...- .+|+... . ...++-+.+......+ ++++|..+++++.+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~-~-La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAE-E-LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHH-H-HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 356899999999999987653 3444332 2 2344445666666777 999999999998764
|
It is also involved in sporulation []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.05 Score=45.15 Aligned_cols=105 Identities=9% Similarity=-0.041 Sum_probs=56.8
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004480 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (750)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 244 (750)
+-..|+.++|+.+|++.+..|...... ...+..+...|...|++++|+.+|
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~-----------------------------~~a~i~lastlr~LG~~deA~~~L 61 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADR-----------------------------RRALIQLASTLRNLGRYDEALALL 61 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHH-----------------------------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 334799999999999988877443210 123444556666666666666666
Q ss_pred HHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc
Q 004480 245 DASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (750)
Q Consensus 245 ~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 302 (750)
++.....+.+ +......+..++...|+.++|++.+-.... ++...|.--|..|+
T Consensus 62 ~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 62 EEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 6665532210 111111222345566666666666655443 23334554444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.26 Score=48.93 Aligned_cols=250 Identities=12% Similarity=0.005 Sum_probs=155.8
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 243 (750)
...+..|+..+...++.. |++..+|..-+..+...+++++|+--.+.- +............+...++..+|...
T Consensus 62 ~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHH
Confidence 577888899898888855 888888888888888888888877655332 22222222233333333333333333
Q ss_pred HH---------------HHHhCCC-CCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHh----hc
Q 004480 244 YD---------------ASKKHLS-SPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NA 302 (750)
Q Consensus 244 ~~---------------~~~~~~~-~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~----~~ 302 (750)
++ ....... +|....|..+-. ++.-.|++++|.++--..++.. ....+...+++ +.
T Consensus 140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYN 216 (486)
T ss_pred hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccc
Confidence 22 2221111 133344444432 4566688888888776665442 12233444443 44
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHH-------------HHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHH
Q 004480 303 HDLKFTLEVYKNMQKLGVMADMASYNI-------------LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (750)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~-------------ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~l 369 (750)
.+.+.+..-|.+-+..+ |+...-.. =.+-..+.|.+..|.+.|.+...+.... ..++...|...
T Consensus 217 ~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-~~~naklY~nr 293 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-KKTNAKLYGNR 293 (486)
T ss_pred cchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-cchhHHHHHHh
Confidence 67788888888777654 44322211 1234457899999999999988765443 67777888888
Q ss_pred HHHHHhccCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004480 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTIT--WSSLINACANAGLVEQAMHLFEEMLQAG 428 (750)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~ 428 (750)
.....+.|+.++|+.--+...+.+ +... |..-..++...+++++|++-|+...+..
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888999999999999888887642 2222 2233344555788999999998887753
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.16 Score=54.64 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=51.9
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCC
Q 004480 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (750)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (750)
+.++..|..+.-.....|++++|...+++... +.|+...|..+...+...|+.++|.+.+++.....
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAID------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34556676666666667888888888888887 55777888888888888888888888888888764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.078 Score=47.77 Aligned_cols=98 Identities=16% Similarity=0.056 Sum_probs=69.4
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004480 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (750)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (750)
...+..+...+...|++++|...|+....+..+ ......+|..+...+...|++++|+..++...... +....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID--PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 455677777888889999999999988763211 01123478888888999999999999999988753 223455666
Q ss_pred HHHHHH-------hcCCHHHHHHHHHHH
Q 004480 404 LINACA-------NAGLVEQAMHLFEEM 424 (750)
Q Consensus 404 li~~~~-------~~g~~~~a~~~~~~m 424 (750)
+...+. +.|+++.|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 666666 777877666666544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.1 Score=53.13 Aligned_cols=72 Identities=10% Similarity=0.021 Sum_probs=58.7
Q ss_pred cCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc
Q 004480 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (750)
Q Consensus 65 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (750)
.+|+. ...+..++.+|.+.|++++|+..|+++++. +|+.... ...+.++...|.+.|++++|++.|+++++.
T Consensus 70 ~dP~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA---~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKT-AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEA---QAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45666 889999999999999999999999999999 5553321 122356666799999999999999999984
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.25 Score=53.12 Aligned_cols=72 Identities=15% Similarity=0.049 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004480 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY 621 (750)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 621 (750)
.+...|.++.-.+...|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++... +.|...||
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 35567777766667789999999999999985 57888999999999999999999999999876 46766664
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.013 Score=43.29 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=22.5
Q ss_pred ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004480 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (750)
.|++++|+++|+++...... +...+..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444444444444443211 3444444444444444455544444444443
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.014 Score=43.07 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=43.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHH
Q 004480 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (750)
Q Consensus 232 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 297 (750)
...|++++|++.|+.+.+..+ -+..++..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 356788888888888876533 26667777888888888888888888887766 3443444333
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.084 Score=50.45 Aligned_cols=113 Identities=9% Similarity=-0.047 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhc---CCHHHHHHH
Q 004480 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKK---RDLVSALRA 243 (750)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~---g~~~~A~~~ 243 (750)
.+....-++.-+..+ |.+...|..|+.+|...|+.+.|...|.. .|++...+..+..++... ..-.++..+
T Consensus 138 ~~~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 344444445444444 88888999999999999999999887765 377777777766655443 245678888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004480 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (750)
|+++..... -|+.+...+...+...|++.+|...|+.|.+..
T Consensus 216 l~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 998887432 356677777778888999999999999888764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.2 Score=44.11 Aligned_cols=80 Identities=16% Similarity=0.007 Sum_probs=40.9
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRA 243 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~ 243 (750)
.|++++|.+-|+.|.+.. .....-...|.-.--+.|..+.|.++.+. .|.-...+..++...+..|+|+.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 567777777777666421 11111111122222245555555555333 355555666666666666666666666
Q ss_pred HHHHHh
Q 004480 244 YDASKK 249 (750)
Q Consensus 244 ~~~~~~ 249 (750)
.+.-.+
T Consensus 211 vd~~~~ 216 (531)
T COG3898 211 VDAQRA 216 (531)
T ss_pred HHHHHH
Confidence 665443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.071 Score=46.73 Aligned_cols=123 Identities=14% Similarity=0.058 Sum_probs=73.1
Q ss_pred hhhhHHHHHHhhccCcHHHHHHHHHHHHhCC---CCCccc-ccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004480 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFR---LPVKEL-DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (750)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (750)
|..++.........|+.+.+...+++++..- +.++.. ..|..-.+... ... -..+...++..
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l------------~~~--~~~~~~~l~~~ 71 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERL------------REL--YLDALERLAEA 71 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHH------------HHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH------------HHH--HHHHHHHHHHH
Confidence 3444443433444788888888888877532 112111 12221111111 000 01345567778
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCccHH
Q 004480 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIY 292 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~ 292 (750)
+...|++++|..+.+.+....+ -+...|..+|.+|...|+..+|.+.|+.+.. .|+.|+..
T Consensus 72 ~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 8889999999999999988543 4788999999999999999999999998753 35555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.022 Score=41.58 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=45.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 227 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
+...+.+.|++++|+..|+++.+..+ -+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667788899999999998887542 35678888888888899999999988888765
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.96 Score=42.22 Aligned_cols=98 Identities=11% Similarity=0.122 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--
Q 004480 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ-- 441 (750)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-- 441 (750)
...+.++..+.-.|.+.-...++.+.++...+-+......|++.-.+.|+.+.|...|++..+..-+.|..+++.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667777778888888889999998877677788888888888899999999999998887654555555555543
Q ss_pred ---HHHHhCChHHHHHHHHHHhh
Q 004480 442 ---ACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 442 ---~~~~~g~~~~A~~~~~~~~~ 461 (750)
.|.-.+++..|.+.+.++..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred hhhheecccchHHHHHHHhhccc
Confidence 34445677777777766543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.12 Score=45.16 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 004480 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCC 436 (750)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 436 (750)
....++..+...|++++|..+.+.+.... +-+...|..+|.+|...|+...|.+.|+++.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34555666778888999999998888764 34778888899999999999999988887753 3788877654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.4 Score=47.54 Aligned_cols=306 Identities=14% Similarity=-0.004 Sum_probs=157.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHH--hcCCCccccccch
Q 004480 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN--ELGVAPLELFDGS 153 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~--~~~~~p~~~~~~~ 153 (750)
.-..-+++.|+...-...|+.+++.|.+ +......+++.+..+|.-.++|++|+++...=+ .+-+. |..--..
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTe----Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg-dklGEAK 96 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTE----DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG-DKLGEAK 96 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcch----HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc-chhcccc
Confidence 3357889999999999999999999754 222345566788888888999999988754321 11000 0000000
Q ss_pred hhhhhHHHHHHhhccCcHHHHHHHHHHHH----hCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004480 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLE----EFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (750)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (750)
.-..+.+.+.. .|.+++|+-...+=+ +.|-.......+..++.+|...|+--. ...|.+...++.=+
T Consensus 97 ssgNLGNtlKv---~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g-----~~~pee~g~f~~ev- 167 (639)
T KOG1130|consen 97 SSGNLGNTLKV---KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG-----LEAPEEKGAFNAEV- 167 (639)
T ss_pred ccccccchhhh---hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC-----CCChhhcccccHHH-
Confidence 00111111111 567777765533211 222112222223333333333222100 00010000111000
Q ss_pred HHHhcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCC
Q 004480 230 EFGKKRDLVSALRAYDASK----KHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD 304 (750)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 304 (750)
...++.|.+.|.+=. +.|-. .-...|..|...|--.|+++.|+...+.-...
T Consensus 168 ----~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~i------------------- 224 (639)
T KOG1130|consen 168 ----TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEI------------------- 224 (639)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHH-------------------
Confidence 011223333333211 11100 11234444555555556666666554432210
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhh-cCCCccCHHHHHHHHHHHHhccCHHHHH
Q 004480 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (750)
Q Consensus 305 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~g~~~~~~~~~~~li~~~~~~g~~~~a~ 383 (750)
|.+.=++. .....+..+.+++.-.|+++.|.+.|+....+.. -|.-.......-.|.+.|.-..+++.|+
T Consensus 225 ---a~efGDrA------aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI 295 (639)
T KOG1130|consen 225 ---AQEFGDRA------AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAI 295 (639)
T ss_pred ---HHHhhhHH------HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 11111111 1223566677888888999999888877554321 1212234455667888888888899998
Q ss_pred HHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004480 384 KVKEDMLSA-----GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 384 ~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (750)
.++..-+.. +..-....+-+|..+|...|..++|+.+...-++.
T Consensus 296 ~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 296 TYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 888765431 11224567788999999999999999887766553
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.84 Score=40.22 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=101.4
Q ss_pred CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCC-CCH
Q 004480 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PNT 398 (750)
Q Consensus 320 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~ 398 (750)
+.|+...--.|..++...|+..+|...|++.. .|.+..|......+.++....++..+|...++.+.+.... -+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal----sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL----SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh----ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 35777777788899999999999999999887 5777888888999999999999999999999998876411 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 004480 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (750)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (750)
.+.-.+.+.+...|.+.+|...|+..... -|+...-...-..+.+.|+.+++..-+..+
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34556778899999999999999999876 454443333334456777777765544443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.2 Score=41.69 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=54.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHH
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 295 (750)
.+.+.++..+.-.|++.-....+++.++...+.++.....+++.-.+.||.+.|...|++..+..-+.|..+++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~ 251 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK 251 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh
Confidence 45666777777778888888888888887666677888888888888899988888888776543333333333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.037 Score=40.92 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 004480 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG-LVEQAMHLFEEM 424 (750)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m 424 (750)
.|..+...+...|++++|+..|.+.++.. +-+...|..+..++.+.| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33344444444444444444444444332 113334444444444444 344444444443
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.87 E-value=3.4 Score=44.78 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=97.1
Q ss_pred HHHHHHHHH-cCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHH
Q 004480 309 LEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (750)
Q Consensus 309 ~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 387 (750)
+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..++|++-+++-+
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--------ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--------IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--------CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 444445533 2445566677777888888999999999988775 3899999999999999999998877665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 388 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
.+. ...-|.-.+.+|.+.|+.++|.+++.+.. +.. -.+.+|.+.|++.+|.++--+
T Consensus 740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHHH
Confidence 543 24567888999999999999999988763 211 567889999999988776543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.026 Score=42.34 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=47.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcC
Q 004480 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (750)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~ 143 (750)
...+.+.+++++|+..++.++.. +|+....+...+.+ +.+.|++++|.+.|++.++.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~------~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARC------LFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHH------HHHhccHHHHHHHHHHHHHHC
Confidence 45788899999999999999999 66655554444444 889999999999999999843
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.15 Score=42.86 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 004480 547 NHISWTILIDACGGSGNVEGALQILKIMR---------------EDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK- 610 (750)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 610 (750)
|..++..+|.++++.|+++....+++..= ...+.|+..+..+++.+|+..|++..|.++++...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45567777788888888877777775441 11245677777777777777777777777777655
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCC
Q 004480 611 HYQIQPNLVTYITLLRARSRYGS 633 (750)
Q Consensus 611 ~~g~~p~~~t~~~li~~~~~~g~ 633 (750)
..++.-+..+|..|+.-+...-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 34566667777777766554433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.75 E-value=2.5 Score=42.36 Aligned_cols=247 Identities=11% Similarity=-0.038 Sum_probs=157.7
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (750)
+.+..+|..|+..+..+++ .-|+...+ +.+-+..+..-|++++|.--.+.-+. +.+..........+.+.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~--~~pd~a~y------y~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAID--MCPDNASY------YSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHhhHHHHHHHHHHHHH--hCccchhh------hchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhh
Confidence 4578999999999999998 45554322 12222233336788877765555444 33555556666777777
Q ss_pred cCCChHHHHHHhhhC----------------CCCc-----chHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004480 203 NKPDVNLAIRYACIV----------------PRAD-----ILFCNF-VREFGKKRDLVSALRAYDASKKHLSSPNMYICR 260 (750)
Q Consensus 203 ~~~~~~~A~~~~~~~----------------~~~~-----~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 260 (750)
..++..+|.+.++.- |.+. ..+-.+ ...+.-.|++++|.++-..+.+.. ....+.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~a 205 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEA 205 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHH
Confidence 777777776554321 1111 112222 445667899999998887777632 122333
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHH---------------hhcCChHHHHHHHHHHHHc---CC
Q 004480 261 TIID--VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN---------------VNAHDLKFTLEVYKNMQKL---GV 320 (750)
Q Consensus 261 ~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~---------------~~~~~~~~a~~~~~~m~~~---g~ 320 (750)
..++ ++--.++.+.|...|++.+..+ ||...-.+.-. ...|.+..|.+.|.+.+.. ++
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~ 283 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK 283 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc
Confidence 3443 3445678899999999887653 44433222111 1236788999999988764 34
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHH---HHHHHHHHHHhccCHHHHHHHHHHHHHC
Q 004480 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF---TYSTIVKVFADAKWWQMALKVKEDMLSA 392 (750)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (750)
.++...|........+.|+.++|+.--+.... .|.. .|..-..++...++|++|.+-|++..+.
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~--------iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALK--------IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhh--------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666677777788899999999998887765 2332 3444445667789999999999988765
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.74 E-value=2.7 Score=42.71 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHH----HHHHc---CCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH--HH
Q 004480 529 YYRVKALMNEMRTVGLSP-NHISWTILI----DACGG---SGNVEGALQILKIMREDGMSPD----VVAYTTAIKV--CV 594 (750)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p-~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~--~~ 594 (750)
-++|.++++.+.+. .| |..+-|.+. ..|.. ...+..-..+-+-+.+.|+.|- ...-|.|-+| +.
T Consensus 396 dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 396 DEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred cHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 35666666666653 22 333333222 22221 2233444444444555677663 3345555554 45
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004480 595 RSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELI 663 (750)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 663 (750)
.+|++.++.-.-....+ +.|++.+|.-+.-++....+.++ |++++.. ++|+..++++=+
T Consensus 474 sqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~e---A~~~l~~-----LP~n~~~~dskv 532 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQE---AWEYLQK-----LPPNERMRDSKV 532 (549)
T ss_pred hcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHH---HHHHHHh-----CCCchhhHHHHH
Confidence 57888877766555554 67888888877766666665555 5666654 367776666543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.11 Score=48.62 Aligned_cols=104 Identities=12% Similarity=0.117 Sum_probs=63.9
Q ss_pred CccHHHHHHHHHHHHh-------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 004480 512 KPTTTTYNILMKACCT-------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (750)
Q Consensus 512 ~p~~~~~~~li~~~~~-------~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 584 (750)
+.|-.+|-..+..+.. +.+-....++.|.+-|+.-|..+|+.||..+-+-.- .|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence 4566666666666542 355666677777777888888888877776544221 1211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004480 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSL 634 (750)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 634 (750)
.+-.....|= .+-+-+++++++|...|+-||..+-..|+.++.+.+..
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1111111222 22345777888888888888888888888887777653
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.3 Score=43.72 Aligned_cols=147 Identities=12% Similarity=0.204 Sum_probs=101.3
Q ss_pred cHHHHHHHHHHHHh----cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CC----CHHHHHHHHHHHHHCC---CC
Q 004480 514 TTTTYNILMKACCT----DYYRVKALMNEMRTVGLSPNHISWTILIDACGG--SG----NVEGALQILKIMREDG---MS 580 (750)
Q Consensus 514 ~~~~~~~li~~~~~----~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g---~~ 580 (750)
...++.+++..... ..++...+++.|.+.|++-+..+|-+..-.... .. ....|..+++.|++.. -.
T Consensus 59 ~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs 138 (297)
T PF13170_consen 59 HRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS 138 (297)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC
Confidence 34555555555444 356788899999999999888888664333332 22 3667999999999863 23
Q ss_pred CCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCC
Q 004480 581 PDVVAYTTAIKVCVRSKR----LKQAFSLFEEMKHYQIQPN-LVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN 655 (750)
Q Consensus 581 p~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~ 655 (750)
++...+..++.. ..++ .+.+..+|+.+.+.|+..+ ..-+-+-+-+++.....+.+.++.++++.+.+.|+++.
T Consensus 139 ~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik 216 (297)
T PF13170_consen 139 PEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIK 216 (297)
T ss_pred ccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccc
Confidence 466677777655 3333 4678888999999898874 33444444455444444457899999999999999988
Q ss_pred HHHHHHH
Q 004480 656 DTYLKEL 662 (750)
Q Consensus 656 ~~~~~~l 662 (750)
...|..+
T Consensus 217 ~~~yp~l 223 (297)
T PF13170_consen 217 YMHYPTL 223 (297)
T ss_pred cccccHH
Confidence 8776644
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.035 Score=42.29 Aligned_cols=68 Identities=12% Similarity=0.011 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhhcCchhHHHHHHHHHHhc--CCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHh
Q 004480 113 LEMVASGIVKSIREGRIDCVVGVLKKLNEL--GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (750)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (750)
..++.++...+...|++++|++.|+++++. ...++. ..+..++.+....+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH---PDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH---HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455667778899999999999999999864 122221 12344555555556668999999999887654
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.63 E-value=2.8 Score=42.00 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=35.2
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHh
Q 004480 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGK 233 (750)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~ 233 (750)
.|+.+-|..+++. .|. ...-+..+...|..+.|+.-.-.-.+.+.+|..|+..-.+
T Consensus 13 ~GR~~LA~~LL~~------Ep~----~~~qVplLL~m~e~e~AL~kAi~SgD~DLi~~vLl~L~~~ 68 (319)
T PF04840_consen 13 EGRPKLATKLLEL------EPR----ASKQVPLLLKMGEDELALNKAIESGDTDLIYLVLLHLKRK 68 (319)
T ss_pred cChHHHHHHHHHc------CCC----hHHHHHHHhcCCchHHHHHHHHHcCCccHHHHHHHHHHHh
Confidence 7999999887763 122 2234556777788888766554445555666666654443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.22 Score=41.84 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004480 582 DVVAYTTAIKVCVRSKRLKQAFSLFEEMK---------------HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQD 646 (750)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~ 646 (750)
|..++.++|.++++.|+++....+++..= ...+.|+..+..+++.+|+..|++.. |+++.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~---al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFS---ALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHH---HHHHHHH
Confidence 56789999999999999999999998652 22457999999999999999998776 5666666
Q ss_pred HHH-cCCCCCHHHHHHHHHHHH
Q 004480 647 MWK-AGYKANDTYLKELIEEWC 667 (750)
Q Consensus 647 m~~-~g~~p~~~~~~~li~~~~ 667 (750)
..+ .+++.+..+|..|++...
T Consensus 78 fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHcCCCCCHHHHHHHHHHHH
Confidence 654 778888999999998654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.49 Score=42.73 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
.+|.-+...+...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34555555555556666666655555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.28 Score=47.47 Aligned_cols=100 Identities=6% Similarity=-0.075 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCC--CCCHHHHHH
Q 004480 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV--TPNTITWSS 403 (750)
Q Consensus 326 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ 403 (750)
.|...+..+.+.|++++|...|+.+.+...++... ...+--+...|...|++++|...|+.+...-. ......+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a--~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQ--PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 45555544455677777777777776631111111 13455566667777777777777777765411 112333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 004480 404 LINACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~ 427 (750)
+...+...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555666777777777777777664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.30 E-value=2.3 Score=39.60 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=44.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
..+...+..+...|++.+|.+.|+.+....+.. -..+.-.++.++-+.|+++.|...|++..+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345556667778888999998888888754322 2345666777888888888888888887765
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.5 Score=49.55 Aligned_cols=162 Identities=9% Similarity=0.068 Sum_probs=103.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHH-HhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchh
Q 004480 76 DMASKLAKDGRLEEFAMIVESVV-VSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~ 154 (750)
.......-+|+++++.++.+.-. -..++++ .-..+++-+.+.|-++.|+++-..-.. -
T Consensus 266 ~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~---------~~~~i~~fL~~~G~~e~AL~~~~D~~~------------r 324 (443)
T PF04053_consen 266 LEFKTAVLRGDFEEVLRMIAASNLLPNIPKD---------QGQSIARFLEKKGYPELALQFVTDPDH------------R 324 (443)
T ss_dssp HHHHHHHHTT-HHH-----HHHHTGGG--HH---------HHHHHHHHHHHTT-HHHHHHHSS-HHH------------H
T ss_pred HHHHHHHHcCChhhhhhhhhhhhhcccCChh---------HHHHHHHHHHHCCCHHHHHhhcCChHH------------H
Confidence 34556667899999877765221 1111211 224555667789999999888543321 4
Q ss_pred hhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc
Q 004480 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234 (750)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~ 234 (750)
|+.-++ .|+.+.|.++.++ .++...|..|+.....+|+++.|++.|.+..+ +..|+-.|.-.
T Consensus 325 FeLAl~-------lg~L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----~~~L~lLy~~~ 386 (443)
T PF04053_consen 325 FELALQ-------LGNLDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----FSGLLLLYSST 386 (443)
T ss_dssp HHHHHH-------CT-HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----HHHHHHHHHHC
T ss_pred hHHHHh-------cCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----ccccHHHHHHh
Confidence 455454 8999999887643 34566899999999999999999999988754 67777788888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 235 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
|+.+.-.++-+.....|- +|....++...|++++..+++.+-
T Consensus 387 g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 387 GDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 998888888877776543 455555566678888888777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=3.1 Score=39.22 Aligned_cols=189 Identities=8% Similarity=0.021 Sum_probs=113.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
+..+..-+....+.|++++|...|+.+.... |.+.- ...+...++.++-+.+++++|+..+++.++. .|+..
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~--p~s~~---~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~- 105 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH--PFSPY---SEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHP- 105 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCcc---cHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCC-
Confidence 4445556667778899999999999999774 32211 2344456777888999999999999999985 33322
Q ss_pred cchhhhhhHHHHHHhhc-------cCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcch
Q 004480 151 DGSGFKLLKNECQRLLD-------SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL 223 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 223 (750)
+.-+-.++.+...+.. +....+|+.-|+.++..- |++.-......+.- .+ .+..+
T Consensus 106 -n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~-----------~~----~d~LA 167 (254)
T COG4105 106 -NADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIV-----------KL----NDALA 167 (254)
T ss_pred -ChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHH-----------HH----HHHHH
Confidence 1233444444433321 122334555555555533 44332221111100 00 00011
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 224 --FCNFVREFGKKRDLVSALRAYDASKKHLSS--PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 224 --~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
=-.+...|.++|.+..|..-+++|.+.-.. -....+-.+..+|.+.|-.++|...-.-+...
T Consensus 168 ~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 168 GHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 123677899999999999999999986221 12346667777888888888887765554433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.52 Score=40.05 Aligned_cols=76 Identities=9% Similarity=0.057 Sum_probs=58.1
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCc
Q 004480 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (750)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p 146 (750)
|+.+...+..-+....+.|++++|++.|+.+....+... + ...+-..++.++.+.|++++|+..+++.++ +.|
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-y----a~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP 78 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE-Y----AEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHP 78 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc-c----cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCC
Confidence 444566677788888999999999999999998843222 1 123334678889999999999999999998 556
Q ss_pred ccc
Q 004480 147 LEL 149 (750)
Q Consensus 147 ~~~ 149 (750)
++.
T Consensus 79 ~hp 81 (142)
T PF13512_consen 79 THP 81 (142)
T ss_pred CCC
Confidence 543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.2 Score=46.97 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=45.6
Q ss_pred cccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 004480 504 SFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583 (750)
Q Consensus 504 ~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 583 (750)
..|+.+|+..|..+|+.+|+.+-+ ..+.|....-...+ -|-+ +-+=++.++++|...|+.||-
T Consensus 96 k~m~eyGVerDl~vYk~LlnvfPK--------------gkfiP~nvfQ~~F~-HYP~--QQ~C~I~vLeqME~hGVmPdk 158 (406)
T KOG3941|consen 96 KYMKEYGVERDLDVYKGLLNVFPK--------------GKFIPQNVFQKVFL-HYPQ--QQNCAIKVLEQMEWHGVMPDK 158 (406)
T ss_pred HHHHHhcchhhHHHHHHHHHhCcc--------------cccccHHHHHHHHh-hCch--hhhHHHHHHHHHHHcCCCCch
Confidence 457777888888888777776532 11222222111111 1111 223456677777777777777
Q ss_pred HHHHHHHHHHHHcCC
Q 004480 584 VAYTTAIKVCVRSKR 598 (750)
Q Consensus 584 ~~~~~li~~~~~~g~ 598 (750)
.+-..|+.+|++.|-
T Consensus 159 E~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 159 EIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHhccccc
Confidence 777777777776665
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=2.2 Score=37.29 Aligned_cols=121 Identities=9% Similarity=0.010 Sum_probs=63.3
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCC---cch-----HHHHHHHHHhcCC
Q 004480 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---DIL-----FCNFVREFGKKRD 236 (750)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-----~~~l~~~~~~~g~ 236 (750)
+++.+..++|+..|..+.+.|...-.............+.|+...|...|..+-.+ +.. -..-.-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 34467778888888887776644323333334444555566666666666554211 111 1112223445566
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
+++.....+-+...+-+.-...-.+|.-+--+.|++..|.+.|.++...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6666655555544332222333445555555666666666666666543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.04 E-value=6.1 Score=42.43 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHH
Q 004480 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLRARSRYGSLH 635 (750)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~ 635 (750)
..|-.|..--...|.++.|.+.--.+.+ ..+-|....|+.+.-+.|....+.
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFG 1074 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFG 1074 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhh
Confidence 3444444555667888888776554443 235677777776665555444333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.94 Score=41.85 Aligned_cols=206 Identities=13% Similarity=0.035 Sum_probs=113.2
Q ss_pred HHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccc
Q 004480 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (750)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 192 (750)
...+.....+|-..+++++|...|.++.+. -+.+.. . ..+ ...+++|.-+.+++... +..+.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrs----l----fhA------AKayEqaamLake~~kl---sEvvd 92 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRS----L----FHA------AKAYEQAAMLAKELSKL---SEVVD 92 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhccc----H----HHH------HHHHHHHHHHHHHHHHh---HHHHH
Confidence 334445555677889999999999888752 111111 1 111 23345555555554431 12233
Q ss_pred cHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC---C--CCCCHHHHHHHHHHHH
Q 004480 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH---L--SSPNMYICRTIIDVCG 267 (750)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~li~~~~ 267 (750)
.+......|...|.++-|--.+++.- -....-+.++|+++|.+...- + ...-...+..+-+.+.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAa-----------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAA-----------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHH-----------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 34444555666666665544333210 011234566666666554321 1 0112335556666778
Q ss_pred hcCCHHHHHHHHHHHHhC----CCCccH---HHHHHHHHhhcCChHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHHc
Q 004480 268 ICGDYMKSRAIYEDLRSQ----NVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLA 337 (750)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~----g~~~~~---~~~~~ll~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~ 337 (750)
+..++.+|-..|.+-... .-.++. +.-.+++..+..++..|...++.--+. .-+-+..+...||.+| ..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 888887776555443221 112333 223344445668999999999985443 2344677888888887 56
Q ss_pred CChHHHHHHHH
Q 004480 338 GNTVLAQEIYG 348 (750)
Q Consensus 338 g~~~~A~~~~~ 348 (750)
|+.+++..+..
T Consensus 241 gD~E~~~kvl~ 251 (308)
T KOG1585|consen 241 GDIEEIKKVLS 251 (308)
T ss_pred CCHHHHHHHHc
Confidence 88888877654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.18 Score=37.62 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=26.7
Q ss_pred HHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004480 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (750)
|.+.+++++|.++++.+...+.. +...|.....++.+.|++++|.+.|+...+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44455555555555555544322 3444444555555555555555555555543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.6 Score=47.81 Aligned_cols=66 Identities=12% Similarity=-0.059 Sum_probs=57.6
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCH----HHHHHHHHHHHhccCHHHHHHHHHHHHHC
Q 004480 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (750)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (750)
+.+...++.+..+|.+.|++++|...|++..+ +.|+. .+|..+..+|...|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE------LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677899999999999999999999999887 45664 35899999999999999999999999875
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.94 E-value=4.5 Score=40.35 Aligned_cols=292 Identities=12% Similarity=0.002 Sum_probs=157.7
Q ss_pred hhHHHHHHHHhh--cCChHHHHHHHHHHHHh-cCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccc
Q 004480 72 DYYADMASKLAK--DGRLEEFAMIVESVVVS-EGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (750)
Q Consensus 72 ~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~ 148 (750)
.-|+.|-..++. .|+-..|.++-.+.... ..+-....+++. ..+....|++++|.+-|+.|.. .|..
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLe-------AQaal~eG~~~~Ar~kfeAMl~---dPEt 152 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLE-------AQAALLEGDYEDARKKFEAMLD---DPET 152 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHH-------HHHHHhcCchHHHHHHHHHHhc---ChHH
Confidence 345555555544 47777777776665422 112222222211 1223468999999999999986 2311
Q ss_pred cccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC------CCCc-
Q 004480 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV------PRAD- 221 (750)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~- 221 (750)
.. .-+-..++ ...+.|..+-|..+-+..-... |.-.+.+...+...+..|+.+.|+++.+.- .++.
T Consensus 153 Rl-lGLRgLyl----eAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a 225 (531)
T COG3898 153 RL-LGLRGLYL----EAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA 225 (531)
T ss_pred HH-HhHHHHHH----HHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH
Confidence 10 00111222 2233688888888888766544 777788888999999999999999987552 1111
Q ss_pred -chHHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 004480 222 -ILFCNFVREFG---KKRDLVSALRAYDASKKHLSSPNMYI-CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (750)
Q Consensus 222 -~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 296 (750)
..-..|+.+-. -.-+...|...-.+..+ +.||..- --.-..++.+.|+..++-.+++.+-+.. |....+..
T Consensus 226 eR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l 301 (531)
T COG3898 226 ERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL 301 (531)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH
Confidence 11111222111 11234555554444443 4455432 2233456778888888888888887763 33344444
Q ss_pred HHHhhcCChHHHHHHHHHHHHc-CCCC-CHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHH
Q 004480 297 LMNVNAHDLKFTLEVYKNMQKL-GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (750)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~-g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~ 374 (750)
.+.+..|+. ++.-+++..+. .++| |..+.-.+..+-...|++..|..--+.... ..|....|..|...-.
T Consensus 302 Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r------~~pres~~lLlAdIee 373 (531)
T COG3898 302 YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR------EAPRESAYLLLADIEE 373 (531)
T ss_pred HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh------hCchhhHHHHHHHHHh
Confidence 444444432 22222222111 1122 344444555666666666666655555444 3455566665555433
Q ss_pred -hccCHHHHHHHHHHHHHC
Q 004480 375 -DAKWWQMALKVKEDMLSA 392 (750)
Q Consensus 375 -~~g~~~~a~~~~~~m~~~ 392 (750)
..|+-.++...+.+..+.
T Consensus 374 AetGDqg~vR~wlAqav~A 392 (531)
T COG3898 374 AETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hccCchHHHHHHHHHHhcC
Confidence 336666666666655543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.21 Score=43.46 Aligned_cols=96 Identities=10% Similarity=-0.015 Sum_probs=61.1
Q ss_pred CcccccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004480 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (750)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 263 (750)
++........+..+-..|++++|..+|.-+ +.+...+..|...+-..+++++|+..|......+. -|...+--..
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~ag 112 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHH
Confidence 333333444555566778888888777664 34455666777777777888888887776654332 2333344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 004480 264 DVCGICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~ 284 (750)
.++...|+.+.|...|....+
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 667777888888887777665
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.32 E-value=3.5 Score=36.41 Aligned_cols=133 Identities=13% Similarity=0.085 Sum_probs=78.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHHHHc-C
Q 004480 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL-G 319 (750)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~-g 319 (750)
.+....+.+.++.|+...+..+++.+.+.|++ ..+.++...++-+|.......+-...+....+.++=-+|.++ +
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQF----SQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 34455566778889999999999999999998 556666777777777666655554444433333333333322 1
Q ss_pred CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 004480 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (750)
Q Consensus 320 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (750)
..+..++..+...|++-+|.++.+.... .+......++.+..+.++...-..+|+-..
T Consensus 90 -----~~~~~iievLL~~g~vl~ALr~ar~~~~--------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 90 -----TAYEEIIEVLLSKGQVLEALRYARQYHK--------VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred -----hhHHHHHHHHHhCCCHHHHHHHHHHcCC--------cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1244566677777888888777765422 122223344445455555444444444333
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.28 E-value=2.1 Score=45.65 Aligned_cols=130 Identities=12% Similarity=-0.070 Sum_probs=65.9
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhcC-CCccccccc--hhhhhhHHHHHHh-hccCcHHHHHHHHHHHHhCCCCCcccc
Q 004480 117 ASGIVKSIREGRIDCVVGVLKKLNELG-VAPLELFDG--SGFKLLKNECQRL-LDSGEVEMFVGLMEVLEEFRLPVKELD 192 (750)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~l~~~~~~~-~~p~~~~~~--~~~~~l~~~~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~ 192 (750)
..++....-.|+-+.+++.+.+..+.+ +.- ....- ..|..++...... ......+.|.++++.+.+.- |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~-~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRS-PLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 355666667899999999998877632 211 11000 0000111111010 01445667777777777644 66555
Q ss_pred cHHHHHHHHHcCCChHHHHHHhhhCCCC--------cchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 193 EEFRIVQLCVNKPDVNLAIRYACIVPRA--------DILFCNFVREFGKKRDLVSALRAYDASKK 249 (750)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 249 (750)
....-++.+...|++++|++.++..-.. ...+.-++-.+.-.++|++|...|..+.+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 5555556666666666666666542110 01222333444444555555555555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.25 E-value=1.8 Score=42.69 Aligned_cols=133 Identities=14% Similarity=0.229 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--h----CChHHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhc
Q 004480 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE--A----CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (750)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (750)
+++...+++.|.+.|++-+..+|-+..-.... . ....+|..+|+.|++...-.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL--------------------- 136 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL--------------------- 136 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc---------------------
Confidence 44566777888888887777666553333222 1 22455677777776653211
Q ss_pred ccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhc----HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcC-
Q 004480 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD----YYRVKALMNEMRTVGLSPNHI-SWTILIDACGGS- 561 (750)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----~~~a~~l~~~m~~~~~~p~~~-~~~~li~~~~~~- 561 (750)
..++...+..++..-..+ .+.++..|+.+.+.|+..+.. -+.+-+-+++..
T Consensus 137 -----------------------Ts~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~ 193 (297)
T PF13170_consen 137 -----------------------TSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGD 193 (297)
T ss_pred -----------------------cCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhcccc
Confidence 145555566665553332 355666666666666655332 222222222221
Q ss_pred CC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004480 562 GN--VEGALQILKIMREDGMSPDVVAYTTAI 590 (750)
Q Consensus 562 g~--~~~A~~~~~~m~~~g~~p~~~~~~~li 590 (750)
.. +..+..+++.+.+.|+++....|..+.
T Consensus 194 ~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 194 DQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred chHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 11 335666666666666666665555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=4.1 Score=42.10 Aligned_cols=111 Identities=11% Similarity=0.105 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHhhcCChHHHHHHHH
Q 004480 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEVYK 313 (750)
Q Consensus 235 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~a~~~~~ 313 (750)
....+|.+.-+...+.+. -|..+...+..++...++++.|...|++....+.. ++...|..++..++|+.++|.+.++
T Consensus 318 ~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 318 LAAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455667777777777543 46777777777777788899999999988876433 4567788888888899999988888
Q ss_pred HHHHcCCCCCH---hhHHHHHHHHHHcCChHHHHHHHHH
Q 004480 314 NMQKLGVMADM---ASYNILLKACCLAGNTVLAQEIYGE 349 (750)
Q Consensus 314 ~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~ 349 (750)
+..+. .|.. ......++.|+.. .++.|.++|-+
T Consensus 397 ~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHhcc--CchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 86654 2332 2333344456544 46677776654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.88 E-value=13 Score=41.25 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 004480 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (750)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (750)
--++..+.+..+.+.+..+.+..-+ -++..|-.++..+++.+..+...++..++.
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 3566777777888888777776643 378889999999999987777666555544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.68 Score=43.87 Aligned_cols=102 Identities=12% Similarity=0.030 Sum_probs=76.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccc
Q 004480 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (750)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~ 152 (750)
.|. .+-.+.+.|++.+|...|...++..+.-. + .....-+++..+..+|++++|...|..+.+. .|+..
T Consensus 144 ~Y~-~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-~----~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~--- 212 (262)
T COG1729 144 LYN-AALDLYKSGDYAEAEQAFQAFIKKYPNST-Y----TPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSP--- 212 (262)
T ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCc-c----cchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCC---
Confidence 444 44455678999999999999999854311 1 2444456777889999999999999999984 44333
Q ss_pred hhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 004480 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (750)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (750)
..-+.+++....+.+.|+.++|...|+++.+.-
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 233567777777888999999999999988755
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.60 E-value=1.9 Score=35.62 Aligned_cols=86 Identities=13% Similarity=0.046 Sum_probs=56.3
Q ss_pred HHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHH
Q 004480 201 CVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY---ICRTIIDVCGICGDYM 273 (750)
Q Consensus 201 ~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~ 273 (750)
+...|+++.|++.|.+ .|....+||+-..++.-.|+.++|+.-+++..+..-..... +|..-...|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 3444555555555544 35666788888888888888888888888777643222222 3333344577778888
Q ss_pred HHHHHHHHHHhCC
Q 004480 274 KSRAIYEDLRSQN 286 (750)
Q Consensus 274 ~A~~~~~~m~~~g 286 (750)
.|..-|+..-+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 8888888776665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.58 E-value=7.9 Score=41.27 Aligned_cols=41 Identities=7% Similarity=0.004 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhC
Q 004480 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (750)
Q Consensus 173 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (750)
+-+.-++++.+.+..|++. .+...|+-.|++.+|-++|.+-
T Consensus 618 ~li~EL~~~k~rge~P~~i----LlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDL----LLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHHHhcCCCchHH----HHHHHHHhhhhHHHHHHHHHHc
Confidence 3344466667777656543 3556677788888888887664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.52 E-value=9.7 Score=38.71 Aligned_cols=78 Identities=10% Similarity=0.002 Sum_probs=49.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCccHHHHH
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL---SSPNMYICRTIIDVCGI---CGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~ 295 (750)
.+...++-.|....+|+..+++.+.+...- +.-...+-....-++.+ .|+.++|++++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344456666888899999999999887631 10112222233344555 688899999888866555556666665
Q ss_pred HHHH
Q 004480 296 SLMN 299 (750)
Q Consensus 296 ~ll~ 299 (750)
.+-+
T Consensus 222 L~GR 225 (374)
T PF13281_consen 222 LLGR 225 (374)
T ss_pred HHHH
Confidence 5443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.16 Score=33.37 Aligned_cols=35 Identities=9% Similarity=0.128 Sum_probs=30.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHH
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA 108 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 108 (750)
..+..++..+.+.|++++|+.+|+++++. .|+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHH
Confidence 46778999999999999999999999999 555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.23 E-value=3.5 Score=41.48 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=89.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHhhhcCC----------CccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHH
Q 004480 332 KACCLAGNTVLAQEIYGEVKHLEAKGV----------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (750)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~~~~~~~~g~----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 401 (750)
+.|.+.|++..|...|+.......... ...-..+++.+..++.+.+++.+|++.....+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 355666777777666666443221100 01223568888899999999999999999999886 4577777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCC-hHHHHHHHHHHhhc
Q 004480 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE-ACQ-FDRAFRLFRSWTLS 462 (750)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~-~~~A~~~~~~~~~~ 462 (750)
---..+|...|+++.|...|+++++. .|+...-+.=+..|.+ ... .+...++|..|-..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77888999999999999999999986 6766655554444433 333 34457788887654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.1 Score=44.85 Aligned_cols=114 Identities=16% Similarity=0.085 Sum_probs=64.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhc-----CChhh--HHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCc
Q 004480 74 YADMASKLAKDGRLEEFAMIVESVVVSE-----GNVSK--FASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (750)
Q Consensus 74 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p 146 (750)
...-+..+-+.|+|..|...|++++..= .++.. -..-+......++...+.+.+++..|++.-.+.++ +.|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~ 288 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE--LDP 288 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCC
Confidence 3445668899999999999999877541 11111 11112233334555566677777777777776665 334
Q ss_pred cccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHH
Q 004480 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (750)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (750)
++. -.|.+-..++...|+++.|+..|+++++.. |.+......+
T Consensus 289 ~N~------KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el 331 (397)
T KOG0543|consen 289 NNV------KALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAEL 331 (397)
T ss_pred Cch------hHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 322 233333333444667777777777766633 5554433333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.071 Score=32.68 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=28.1
Q ss_pred hhccccCCcchhhhHHHHHHHHhhcCChHHHH
Q 004480 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFA 91 (750)
Q Consensus 60 ~~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 91 (750)
.+.++.+|++ ..+|..++..|...|++++|+
T Consensus 3 ~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNN-AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhc
Confidence 3568899999 999999999999999999986
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.00 E-value=10 Score=37.42 Aligned_cols=177 Identities=10% Similarity=-0.007 Sum_probs=98.3
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccC-cHHHHHHHHHHHHhC----CC-CCcccccHHH
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEF----RL-PVKELDEEFR 196 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g-~~~~A~~~~~~~~~~----~~-~~~~~~~~~~ 196 (750)
..++|+.+.|..++.++.......++.....+...+.+....+...+ ++++|...+++..+. +. ...... ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~-~~- 80 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD-GS- 80 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc-HH-
Confidence 35899999999999998764312222222344445555555556677 888998888875542 10 000000 00
Q ss_pred HHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004480 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV---SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (750)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 273 (750)
-++ ..++..++.+|...+..+ +|.++.+.+...... ...++-.-+..+.+.++.+
T Consensus 81 -------------elr--------~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~ 138 (278)
T PF08631_consen 81 -------------ELR--------LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEE 138 (278)
T ss_pred -------------HHH--------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChh
Confidence 000 134556777777766554 455566666543322 2445555566666688899
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHh----hcCChHHHHHHHHHHHHcCCCCCH
Q 004480 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMADM 324 (750)
Q Consensus 274 ~A~~~~~~m~~~g~~~~~~~~~~ll~~----~~~~~~~a~~~~~~m~~~g~~~~~ 324 (750)
++.+.+.+|...-..+ ...+..++.. .......+...++.+....+.|..
T Consensus 139 ~~~~~L~~mi~~~~~~-e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 139 EYEEILMRMIRSVDHS-ESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhcccc-cchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 9999999998762211 2223333322 223455666666666554444443
|
It is also involved in sporulation []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.97 E-value=17 Score=41.98 Aligned_cols=22 Identities=14% Similarity=0.133 Sum_probs=10.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHH
Q 004480 368 TIVKVFADAKWWQMALKVKEDM 389 (750)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m 389 (750)
.|+.-+...++.-+|-++..+-
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHH
Confidence 3444444444444444444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.76 E-value=1.2 Score=42.15 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=51.2
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004480 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (750)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 244 (750)
+...|++.+|...|...++.. |.+.. ...++.-|...+...|++++|..+|
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~Y--P~s~~---------------------------~~nA~yWLGe~~y~qg~y~~Aa~~f 201 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKY--PNSTY---------------------------TPNAYYWLGESLYAQGDYEDAAYIF 201 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcC--CCCcc---------------------------cchhHHHHHHHHHhcccchHHHHHH
Confidence 334677777777777666644 33221 1134445566666666666666666
Q ss_pred HHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 245 DASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 245 ~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
..+.+..+. | -...+--|.....+.|+.++|...|+++.++
T Consensus 202 ~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 202 ARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666554322 1 1244555555566666666666666666655
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.62 E-value=3.2 Score=44.36 Aligned_cols=168 Identities=13% Similarity=-0.008 Sum_probs=103.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhh----hcCchhHHHHHHHHHHhcCCCccc
Q 004480 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSI----REGRIDCVVGVLKKLNELGVAPLE 148 (750)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~g~~~~A~~~l~~~~~~~~~p~~ 148 (750)
.+..+++...=.|+=+.+++++....+.+ .....-..+.+-.+...+..++ .....+.|.++++.+.+ ..|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCc
Confidence 45566666677899999999999877643 2222222222222233333333 25677789999999997 46654
Q ss_pred cccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHh--CCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCc----c
Q 004480 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE--FRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD----I 222 (750)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~ 222 (750)
. ++..... ..+...|+.++|++.|++... ..++.-....+..++-.+....++++|...|..+.... .
T Consensus 267 ~----lfl~~~g--R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka 340 (468)
T PF10300_consen 267 A----LFLFFEG--RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA 340 (468)
T ss_pred H----HHHHHHH--HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence 3 3332222 223338999999999997663 23333344556667778888999999999988864322 2
Q ss_pred hHH-HHHHHHHhcCCH-------HHHHHHHHHHHh
Q 004480 223 LFC-NFVREFGKKRDL-------VSALRAYDASKK 249 (750)
Q Consensus 223 ~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~ 249 (750)
.|. .....+...|+. ++|..+|.++..
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 222 234445566766 777777776543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.48 E-value=21 Score=39.71 Aligned_cols=181 Identities=13% Similarity=0.096 Sum_probs=118.9
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCcccccc
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (750)
.....-+..+.+-..++-|+.+.+. .+.+++... ...-.-+..+.+.|++++|...|-+.+.. ++|+.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~-----~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~--- 402 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKS---QHLDEDTLA-----EIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE--- 402 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH---
Confidence 3445556677777777777766543 233333221 11122333456899999999999877753 45522
Q ss_pred chhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcch--HHHHHH
Q 004480 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL--FCNFVR 229 (750)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~l~~ 229 (750)
.+..+.+..+..+-..+++.+.+.|... ..-...|+.+|.+.++.++-.++.+..+..... ....+.
T Consensus 403 ---------Vi~kfLdaq~IknLt~YLe~L~~~gla~--~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~ 471 (933)
T KOG2114|consen 403 ---------VIKKFLDAQRIKNLTSYLEALHKKGLAN--SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALE 471 (933)
T ss_pred ---------HHHHhcCHHHHHHHHHHHHHHHHccccc--chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHH
Confidence 1224455778888888999999988554 334567899999999999988888887744333 445666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004480 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (750)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (750)
.+.+.+-.++|..+-.... .+.+....++. ..+++++|++.+..+.
T Consensus 472 Ilr~snyl~~a~~LA~k~~-----~he~vl~ille---~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 472 ILRKSNYLDEAELLATKFK-----KHEWVLDILLE---DLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHhChHHHHHHHHHHhc-----cCHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence 6777777777776655443 24555555554 5688999999988764
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.39 E-value=20 Score=40.13 Aligned_cols=111 Identities=13% Similarity=-0.024 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHH-HHhhhhcCchhHHHHHHHHHHhcCCCcccc
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASG-IVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (750)
+.....-+-....++++++|..++.++...-..|.....-.....+..+ .......|+++.|.++.+..+..=......
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 4444444566778899999999999887653333221111111111111 112346899999999999988752222222
Q ss_pred ccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhC
Q 004480 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (750)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (750)
+-...+.++..+... .|++++|..+.....+.
T Consensus 495 ~r~~~~sv~~~a~~~---~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 495 SRIVALSVLGEAAHI---RGELTQALALMQQAEQM 526 (894)
T ss_pred hhhhhhhhhhHHHHH---hchHHHHHHHHHHHHHH
Confidence 223344444444333 79999999888766553
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.12 E-value=7.2 Score=33.62 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004480 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (750)
Q Consensus 226 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 268 (750)
.++..+.+.+........++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444444444444444332 333344444444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.00 E-value=5.5 Score=39.27 Aligned_cols=207 Identities=14% Similarity=0.076 Sum_probs=111.9
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc-CCCccc
Q 004480 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL-GVAPLE 148 (750)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~p~~ 148 (750)
.-..|..+..+..+.|++++++...-.-+....+ .-+.......+-++.+.+-+--++.+++.+-.+-... |..|..
T Consensus 42 Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~--~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~ 119 (518)
T KOG1941|consen 42 RFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARE--LEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ 119 (518)
T ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc
Confidence 3456666777888888888887654333322111 1111112333345555555666666666665554432 333321
Q ss_pred cccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCC----CcccccHHHHHHHHHcCCChHHHHHHhhhC-------
Q 004480 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP----VKELDEEFRIVQLCVNKPDVNLAIRYACIV------- 217 (750)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------- 217 (750)
... ....++.++. ...+.++++++.|+......-. .-....+-.++..|.+..++++|.-+....
T Consensus 120 ~~g-q~~l~~~~Ah---lgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 120 LGG-QVSLSMGNAH---LGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred ccc-hhhhhHHHHh---hhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 111 1112233332 2257788888888876543211 223344556777788888888776654332
Q ss_pred C-CCc------chHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 218 P-RAD------ILFCNFVREFGKKRDLVSALRAYDASKK----HLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 218 ~-~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
. .+. .+...+..++...|++.+|.+.-++..+ .|-.+ -....-.+.+.|...|+.+.|+.-|++.
T Consensus 196 ~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 196 GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1 111 2344455667777777777766665433 23222 2334456667777788888877777654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.81 E-value=3.7 Score=39.96 Aligned_cols=151 Identities=10% Similarity=-0.081 Sum_probs=80.1
Q ss_pred hhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhC-CCCCcccccHHHHHHH-
Q 004480 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF-RLPVKELDEEFRIVQL- 200 (750)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~- 200 (750)
+.-+|...+|...++++++. .|... ..+...-.++.. .|+.+.-...++++... +...+-..+...+...
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDl---la~kfsh~a~fy---~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDL---LAVKFSHDAHFY---NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhccccccHHHHHHHHHHHh--Cchhh---hhhhhhhhHHHh---ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 34677777777777777763 33222 233333444444 56666667777776643 2111111223333332
Q ss_pred HHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCH
Q 004480 201 CVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICGDY 272 (750)
Q Consensus 201 ~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~ 272 (750)
+...|-+++|++...+. +.+..+..++...+.-.|++.++.+...+-...--..+ ..-|..-+ .+...+.+
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aey 263 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEY 263 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccch
Confidence 33577777777765553 33335555566667777777777776554322111111 11222222 24555788
Q ss_pred HHHHHHHHHH
Q 004480 273 MKSRAIYEDL 282 (750)
Q Consensus 273 ~~A~~~~~~m 282 (750)
+.|+++|+.=
T Consensus 264 e~aleIyD~e 273 (491)
T KOG2610|consen 264 EKALEIYDRE 273 (491)
T ss_pred hHHHHHHHHH
Confidence 8888888753
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.77 E-value=17 Score=37.08 Aligned_cols=81 Identities=11% Similarity=-0.053 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHh---ccCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004480 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD---AKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (750)
Q Consensus 328 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (750)
..++-+|....+++...++++.+....... +.-....--...-++-+ .|+.++|++++..+....-.++..+|..+
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 345556888888888888888887620000 01111222233444556 78888999888886655556777788777
Q ss_pred HHHHH
Q 004480 405 INACA 409 (750)
Q Consensus 405 i~~~~ 409 (750)
...|.
T Consensus 224 GRIyK 228 (374)
T PF13281_consen 224 GRIYK 228 (374)
T ss_pred HHHHH
Confidence 76654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.73 E-value=2.1 Score=41.33 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 004480 550 SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-----HYQIQPNLVTYITL 624 (750)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t~~~l 624 (750)
++..++..+...|+.+.+...++++.... +-|...|..+|.+|.+.|+...|+..|+.+. +.|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566777777777777777777777653 2267777777888888888777777777665 35666666655555
Q ss_pred HHH
Q 004480 625 LRA 627 (750)
Q Consensus 625 i~~ 627 (750)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.71 E-value=8 Score=33.32 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 004480 550 SWTILIDACGGSGNVEGALQILKIM 574 (750)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~m 574 (750)
....++..|.+.+.++++.-++.++
T Consensus 71 d~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 71 DIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred CHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 3344555555555555555555554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.50 E-value=5.9 Score=41.75 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=13.9
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHH
Q 004480 323 DMASYNILLKACCLAGNTVLAQEIYGE 349 (750)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~A~~~~~~ 349 (750)
+...|..|.+...+.|+++-|++.|.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344555555555555555555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=4 Score=42.17 Aligned_cols=62 Identities=10% Similarity=-0.049 Sum_probs=29.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (750)
..+...+...+.-.++++.|..+|++.... .|| ..+|......+.-.|+.++|.+.+++..+
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 344444444444455556666666655542 232 22333333334445666666666655443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.82 E-value=11 Score=33.18 Aligned_cols=122 Identities=12% Similarity=0.071 Sum_probs=74.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHH-----HHHHHhhcCC
Q 004480 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF-----NSLMNVNAHD 304 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-----~~ll~~~~~~ 304 (750)
+++.++.++|+.-|..+.+.|... .+..--.......+.|+-..|...|++.-.....|-..-= ..++-.-.|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 455677888888888888776532 1223333344456778888888888887765444433211 1122223356
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004480 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (750)
Q Consensus 305 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 352 (750)
+++.....+.+-..+.+.....-..|.-+-.+.|++..|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666666666665555444455555666666778888888888877764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.76 E-value=8.6 Score=31.93 Aligned_cols=90 Identities=20% Similarity=0.077 Sum_probs=53.0
Q ss_pred HHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHH
Q 004480 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNT---ITWSSLINAC 408 (750)
Q Consensus 333 ~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~---~~~~~li~~~ 408 (750)
++...|+++.|++.|.+...+ .+-....||.-..++--.|+.++|++=+++.++. |.. +. ..|..-...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLY 125 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHH
Confidence 455667777777777766653 3345566777777777777777777666666543 222 21 1233333345
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 004480 409 ANAGLVEQAMHLFEEMLQAG 428 (750)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~~~ 428 (750)
...|+-+.|..-|+..-+.|
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 56677777776666665554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.71 E-value=2.3 Score=38.35 Aligned_cols=68 Identities=21% Similarity=0.095 Sum_probs=57.3
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc
Q 004480 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (750)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (750)
....+..++..|.+.|++++|++.|.++.+....+... .+++-++|+.....+++..+...+.++...
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-----id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-----IDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45688899999999999999999999999887666543 566667888888999999999998888764
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.69 E-value=3.6 Score=36.93 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=52.1
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhh
Q 004480 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (750)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~ 157 (750)
+.-+-++|++++|..-|..+++..+....-. ..-.+.+-..++.+.+.++.|+.-..++++ +.| ..-.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~---rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~p------ty~kA 170 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEE---RSILYSNRAAALIKLRKWESAIEDCSKAIE--LNP------TYEKA 170 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHH---HHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCc------hhHHH
Confidence 4455566777777777777766643222111 112223444455666777777766666665 333 11223
Q ss_pred hHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 004480 158 LKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (750)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (750)
+.+-+..|-+...+++|++=|++++...
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 3343444444566667776666666544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.57 E-value=14 Score=35.64 Aligned_cols=117 Identities=9% Similarity=0.044 Sum_probs=79.6
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcc--hHH---HHHHHHHhcCCHH
Q 004480 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI--LFC---NFVREFGKKRDLV 238 (750)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~---~l~~~~~~~g~~~ 238 (750)
.+...|++.+|..+|+...... |.+......++..|...|+.+.|..++..+|.+.. .+. .-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4455899999999999988855 77777788888999999999999999999876541 111 2234444444444
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 239 SALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 239 ~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
+...+-.+... .| |...-..+...+...|+.++|.+.+-.+.++
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333333333 24 5666667777788888888888777666544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.42 E-value=8.1 Score=37.75 Aligned_cols=115 Identities=10% Similarity=0.031 Sum_probs=63.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCccHHHHHHHHHhh----cCChHH
Q 004480 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMNVN----AHDLKF 307 (750)
Q Consensus 233 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~----~~~~~~ 307 (750)
.+|+..+|-..++++.+. .+-|..+++-.=++|...|+.+.-...++++.-. +.....++|..=|.++ +|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 347777777777777764 3346667777777777788877777777766543 2222223333222221 245555
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHH
Q 004480 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349 (750)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 349 (750)
|++.-++..+-+ +.|.-...++...+.-.|+..++.+...+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555444433 33444444555555555666666555444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.40 E-value=18 Score=35.03 Aligned_cols=145 Identities=14% Similarity=0.074 Sum_probs=95.9
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccc---cHHHHH
Q 004480 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD---EEFRIV 198 (750)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~ 198 (750)
.....|++.+|...|..++.. .|... .. .+.....+...|+.+.|..++..+....-. +... ....++
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~---~~---~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll 213 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENS---EA---KLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELL 213 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--Ccccc---hH---HHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHH
Confidence 356899999999999999974 33221 12 222233455589999999999875532211 1111 122344
Q ss_pred HHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHH
Q 004480 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTIIDVCGICGDYMKS 275 (750)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 275 (750)
.-....++.....+-+..-|.+...-..+...+...|+.++|...+-.+.+... .-|...-..++..+.-.|.-+.+
T Consensus 214 ~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 214 EQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 445556666777777777888889999999999999999999988776665432 24555666777766666644333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.36 E-value=7.5 Score=33.21 Aligned_cols=75 Identities=8% Similarity=0.043 Sum_probs=40.6
Q ss_pred HHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004480 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (750)
Q Consensus 334 ~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (750)
..+.|++++|.+.|+.+...-..| +-.......++.+|.+.+++++|...++..++..+.-.-.-|...+.+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g--~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFG--EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 345667777777776666522111 122334555666677777777777777766665433223344444444443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.34 E-value=2.5 Score=38.13 Aligned_cols=63 Identities=25% Similarity=0.437 Sum_probs=50.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (750)
..+..+...|.+.|+.+.|++.|.++.+....+. ...+-.+|+.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677888999999999999999999887654443 45677888888889999988888777654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.31 Score=30.31 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=23.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004480 73 YYADMASKLAKDGRLEEFAMIVESVVVS 100 (750)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (750)
+|..|+..+.+.|++++|+.++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999997755
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=89.70 E-value=27 Score=36.51 Aligned_cols=75 Identities=12% Similarity=0.129 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-ccHHHHHHHH
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLM 298 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll 298 (750)
-..+...+.+.|+.++|++.|.+|.+..... +..+...|+.++...+.+.++..++.+..+...+ --..+|+..+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3446667778899999999999988654332 3457888899999999999999998887543322 2345566544
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.66 E-value=1.3 Score=28.96 Aligned_cols=39 Identities=10% Similarity=0.045 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004480 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTI 262 (750)
Q Consensus 223 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 262 (750)
++..+...|.+.|++++|+++|+++.+..+ -|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHh
Confidence 456667777777777777777777776432 234444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.52 E-value=9.6 Score=33.28 Aligned_cols=37 Identities=16% Similarity=0.059 Sum_probs=24.5
Q ss_pred hhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccc
Q 004480 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (750)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 192 (750)
.++.|+.....-...++.+++..+++.+.... |....
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR--P~~~e 45 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLR--PEFPE 45 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--CCchH
Confidence 45555665555555788889988888887744 54443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.14 E-value=20 Score=33.65 Aligned_cols=199 Identities=16% Similarity=0.058 Sum_probs=92.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-cHHHHHHH-HH
Q 004480 223 LFCNFVREFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSL-MN 299 (750)
Q Consensus 223 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l-l~ 299 (750)
.+......+...+++..+...+...... ........+......+...+++..+...+.........+ ....+... +.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3444555555666666666666555431 122334455555555556666666666666665543222 12222222 22
Q ss_pred hhcCChHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCcc-CHHHHHHHHHHHHhc
Q 004480 300 VNAHDLKFTLEVYKNMQKLGV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADA 376 (750)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~ 376 (750)
...++++.+...+.+...... ......+......+...++.+.+...+...... ... ....+..+...+...
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-----NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-----CcccchHHHHHhhHHHHHc
Confidence 333455555555554433110 012222222333344555666666666655542 111 234455555555555
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004480 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (750)
++++.+...+......... ....+..+...+...+..+.+...+.+....
T Consensus 216 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666666666555543211 1222333333333444455555555555443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.04 E-value=9 Score=32.84 Aligned_cols=63 Identities=13% Similarity=-0.026 Sum_probs=37.4
Q ss_pred hhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCC
Q 004480 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218 (750)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 218 (750)
..+.++.....-...++.+++..+++.|.-.. |.....-..-+..+...|++++|.++++.+.
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 44445554444444788999999999888744 6555444444444555555555555555543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.76 E-value=37 Score=36.35 Aligned_cols=393 Identities=11% Similarity=0.067 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHH-hcCCHHHHHHHHHH
Q 004480 172 EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFG-KKRDLVSALRAYDA 246 (750)
Q Consensus 172 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 246 (750)
+.+..+++.++..- |.-.-+|......=.+.|..+.+.++|++ +|-+...|......+. ..|+.+.....|+.
T Consensus 62 ~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 62 DALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 44555566555432 55555566666655667777777777766 4555566666444333 45677777777777
Q ss_pred HHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcC-----------ChHHHHHHHH
Q 004480 247 SKKHL-SS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----------DLKFTLEVYK 313 (750)
Q Consensus 247 ~~~~~-~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-----------~~~~a~~~~~ 313 (750)
....- .. .+...|...|..-..++++.....+|+..++.. ...|+.....+.+ ..+.+.++-.
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRS 215 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhh
Confidence 76532 11 345567777776677788888888888877642 1222222221111 1122211111
Q ss_pred HHHHc-CC---CCCHhhHHHHHHHHH-HcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 004480 314 NMQKL-GV---MADMASYNILLKACC-LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (750)
Q Consensus 314 ~m~~~-g~---~~~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (750)
..... .+ .+.......-++--. ..+..+++..+..+.. ...-.++-......+..-.|+.
T Consensus 216 ~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~---------------~~~~~~~~~s~~~~~kr~~fE~ 280 (577)
T KOG1258|consen 216 DVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV---------------SIHEKVYQKSEEEEEKRWGFEE 280 (577)
T ss_pred hHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH---------------HHHHHHHHhhHhHHHHHHhhhh
Confidence 11110 00 000000000000000 0001111111111110 0111112222333333444444
Q ss_pred HHHCC---C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q 004480 389 MLSAG---V----TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 389 m~~~g---~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (750)
-...- + .++..+|..-+....+.|+.+.+.-+|+...-- +..-...|--.+.-....|+.+-|..++..-.+
T Consensus 281 ~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 281 GIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred hccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 33321 1 234667888888888999999999888887532 111223344444444455777777766654322
Q ss_pred cccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 004480 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRT 541 (750)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~ 541 (750)
-.. .-.|......+.+.-+.++...|..+++.+..
T Consensus 360 i~~---------------------------------------------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 360 IHV---------------------------------------------KKTPIIHLLEARFEESNGNFDDAKVILQRIES 394 (577)
T ss_pred hcC---------------------------------------------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 111 12677888888888888899999999999887
Q ss_pred cCCCCCHH-HHHHHHHHHHcCCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHC
Q 004480 542 VGLSPNHI-SWTILIDACGGSGNVEGAL---QILKIMREDGMSPDVVAYTTAIKV-----CVRSKRLKQAFSLFEEMKHY 612 (750)
Q Consensus 542 ~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~ 612 (750)
.- |+.. .-..-+....+.|+.+.+. .++....+. +-+..+.+.+.-- +.-.++.+.|..++.+|.+.
T Consensus 395 e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 395 EY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI 470 (577)
T ss_pred hC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 63 5543 2233345556788888887 333333322 1222233333322 33368899999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH
Q 004480 613 QIQPNLVTYITLLRARSRYGSLHE 636 (750)
Q Consensus 613 g~~p~~~t~~~li~~~~~~g~~~~ 636 (750)
+.++...|..+++.+...+...+
T Consensus 471 -~~~~k~~~~~~~~~~~~~~~~~e 493 (577)
T KOG1258|consen 471 -LPDCKVLYLELIRFELIQPSGRE 493 (577)
T ss_pred -CCccHHHHHHHHHHHHhCCcchh
Confidence 56678889999998888776554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.75 E-value=1 Score=27.28 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=27.5
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChh
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVS 105 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 105 (750)
..|..++..+...|++++|+..|+++++. +|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL--DPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH--CcC
Confidence 46788999999999999999999999998 553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.69 E-value=22 Score=33.71 Aligned_cols=178 Identities=11% Similarity=0.023 Sum_probs=83.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhc---
Q 004480 228 VREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--- 302 (750)
Q Consensus 228 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--- 302 (750)
+..-.+.|++++|.+.|+.+....+- | ...+.-.++.++-+.+++++|+..+++....-..-...-|...|.+.+
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 33344567777777777777654321 1 233445555666677777777777777665533222222222222211
Q ss_pred ------CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhc
Q 004480 303 ------HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (750)
Q Consensus 303 ------~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~ 376 (750)
+|...+.+.|..+.+ ++.-|=...-...|......+.... ...=..+.+-|.+.
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~L--------A~~Em~IaryY~kr 180 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDAL--------AGHEMAIARYYLKR 180 (254)
T ss_pred cCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHHH--------HHHHHHHHHHHHHh
Confidence 233333333333322 1111111111111221111111100 00001234557777
Q ss_pred cCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004480 377 KWWQMALKVKEDMLSAGVTPN---TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (750)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (750)
|.+..|..-+++|++. .+-+ ....-.|..+|.+.|-.++|...-.-+..
T Consensus 181 ~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 181 GAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred cChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 7777777777777765 2212 22344556667777777777666555544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.63 E-value=17 Score=32.24 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHH
Q 004480 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (750)
Q Consensus 418 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 456 (750)
.++++.+.+.++.|+...+..+++.+.+.|++..-..++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345666667778888888888888888888776655544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.38 E-value=20 Score=32.85 Aligned_cols=67 Identities=13% Similarity=0.047 Sum_probs=41.5
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004480 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
|.-+.+||-|.-.+...|+++.|.+.|+...+.++.-+-...|.-|. +--.|++.-|.+-|.+.-+.
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhc
Confidence 44456777777777777888888888887777543333333343333 23457777777666655544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.14 E-value=5.9 Score=38.37 Aligned_cols=78 Identities=9% Similarity=0.176 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 004480 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCCNI 438 (750)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 438 (750)
.++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 355666777777778888888888877764 33677788888888888888888888777655 477777776665
Q ss_pred HHHH
Q 004480 439 LLQA 442 (750)
Q Consensus 439 ll~~ 442 (750)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.05 E-value=1.2 Score=26.88 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004480 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (750)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (750)
..+..++..+.+.|++++|+..|+++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778899999999999999999999988
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.77 E-value=48 Score=36.52 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHH
Q 004480 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (750)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 454 (750)
--+..+...|+-.+|.++-.+.+ -||...|-.-+.+++..++|++-++
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 33344444555555555554443 4455555555555555555554333
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=87.76 E-value=1.9 Score=42.32 Aligned_cols=145 Identities=14% Similarity=0.000 Sum_probs=77.9
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhc--CCCccccccch
Q 004480 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL--GVAPLELFDGS 153 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~~p~~~~~~~ 153 (750)
.+..+....+.++.+++.|+.+...- ...-+.++-..++..+.+.|.+..++++|.-+..++.+. .+..+....-.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A--~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYA--HNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHh--hccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 45667777788888888888876652 222233444566667777788888888888887776652 11111110000
Q ss_pred hhhhhHHHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHh
Q 004480 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGK 233 (750)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~ 233 (750)
.--.+......+-..|+..+|.+.-++..+..+...+..++ ..-...+.+.|..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~--------------------------arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ--------------------------ARCLLCFADIYRS 258 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH--------------------------HHHHHHHHHHHHh
Confidence 00111122222333455555555554433221111010000 1234457888889
Q ss_pred cCCHHHHHHHHHHHH
Q 004480 234 KRDLVSALRAYDASK 248 (750)
Q Consensus 234 ~g~~~~A~~~~~~~~ 248 (750)
.|+.+.|+.-|+...
T Consensus 259 ~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 259 RGDLERAFRRYEQAM 273 (518)
T ss_pred cccHhHHHHHHHHHH
Confidence 999999888877654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=87.75 E-value=8 Score=32.24 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=49.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004480 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (750)
Q Consensus 220 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (750)
........++.+..+|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3455666778888999999999999888752 3477888888999999999999999999999998864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.61 E-value=18 Score=31.69 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=54.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHhhhcCCCccCH---HHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004480 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV---FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (750)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 408 (750)
..-.+.++.+++..+++.+.- +.|.. .++..++ +...|+|.+|.++|+++...+ |....-..|+..|
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv------LRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~C 87 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV------LRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALC 87 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH------hCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHH
Confidence 344467899999999999887 34544 3444444 789999999999999987653 3333334444444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC
Q 004480 409 ANAGLVEQAMHLFEEMLQAGCEP 431 (750)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~~~~~p 431 (750)
.....-..=...-+++.+.+-.|
T Consensus 88 L~~~~D~~Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 88 LYALGDPSWRRYADEVLESGADP 110 (160)
T ss_pred HHHcCChHHHHHHHHHHhcCCCh
Confidence 43332222222334455554333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.59 E-value=1.3 Score=27.49 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 004480 224 FCNFVREFGKKRDLVSALRAYDA 246 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~ 246 (750)
++.|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555555555555555554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.35 E-value=38 Score=34.84 Aligned_cols=419 Identities=13% Similarity=0.131 Sum_probs=210.7
Q ss_pred CcccccHHHHHHHHHcCCChHHHHHHhhhCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004480 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIVPR----ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (750)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 263 (750)
|.+...|..|++.+..++..++-.+.++++.. -+.+|..-+++=....++.....+|.+..... .+...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHH
Confidence 88888899999999999999998888888633 33567777777667789999999999887643 4566777777
Q ss_pred HHHHhcCCH------HHHHHHHHHHHh-CCCCcc-HHHHHHHHHhhc-----C------ChHHHHHHHHHHHHcCCCC--
Q 004480 264 DVCGICGDY------MKSRAIYEDLRS-QNVTLN-IYVFNSLMNVNA-----H------DLKFTLEVYKNMQKLGVMA-- 322 (750)
Q Consensus 264 ~~~~~~g~~------~~A~~~~~~m~~-~g~~~~-~~~~~~ll~~~~-----~------~~~~a~~~~~~m~~~g~~~-- 322 (750)
+.-.+.... ....+.|+-... .++.|- ...|+....... + +.+...+.|.+|...-+..
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 644333211 112233333332 233332 234444433211 2 3444555565555421110
Q ss_pred ----CHhhHHHHHHHHH-------HcCChHHHHHHHHHHHHhhhcCCC---ccCHHHHHHH-----------HHHHHh--
Q 004480 323 ----DMASYNILLKACC-------LAGNTVLAQEIYGEVKHLEAKGVL---KLDVFTYSTI-----------VKVFAD-- 375 (750)
Q Consensus 323 ----~~~~~~~ll~~~~-------~~g~~~~A~~~~~~~~~~~~~g~~---~~~~~~~~~l-----------i~~~~~-- 375 (750)
|-..|..=++-.. ..--+-.|...++++..+. +|.- +.+..+++-. |+-=..
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt-~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLT-RGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHh-ccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 0011111111110 0011334445555544321 2210 1112222221 110000
Q ss_pred ---ccC-H-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHhCCh
Q 004480 376 ---AKW-W-QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ-ACVEACQF 449 (750)
Q Consensus 376 ---~g~-~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~ 449 (750)
.|+ . ...--++++.... +.-....|-.--..+...++-+.|+.....-.. ..|+ ....+. .|.-.++-
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps---L~~~lse~yel~nd~ 349 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS---LTMFLSEYYELVNDE 349 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc---hheeHHHHHhhcccH
Confidence 000 0 0011111111111 111122222222333445566666665544322 1333 222222 33344455
Q ss_pred HHHHHHHHHHhhcccccccCCCCCCchhhhhhhhhhhcccccCCCCccCCCccccccccCCCCccHHHHHHHHHHHHh--
Q 004480 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-- 527 (750)
Q Consensus 450 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-- 527 (750)
+.....|++....-. ...............+- ..+...+.......-...|...|++-.+
T Consensus 350 e~v~~~fdk~~q~L~---------------r~ys~~~s~~~s~~D~N---~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~ 411 (660)
T COG5107 350 EAVYGCFDKCTQDLK---------------RKYSMGESESASKVDNN---FEYSKELLLKRINKLTFVFCVHLNYVLRKR 411 (660)
T ss_pred HHHhhhHHHHHHHHH---------------HHHhhhhhhhhccccCC---ccccHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 555555554432100 00000000000000000 0000000000011223445555655443
Q ss_pred cHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHH
Q 004480 528 DYYRVKALMNEMRTVG-LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAY-TTAIKVCVRSKRLKQAFSL 605 (750)
Q Consensus 528 ~~~~a~~l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~ 605 (750)
-.+.|..+|-+..+.| +.+++.+++++|..++ .|+...|..+|+.=... .||...| +-.+.-+.+.++-+.|..+
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 4688999999999998 5788999999999776 57888999999875543 4565444 5666777888999999999
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 004480 606 FEEMKHYQIQPN--LVTYITLLRARSRYGSLHEV 637 (750)
Q Consensus 606 ~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~~ 637 (750)
|+..+.+ +.-+ ..+|..+|.-=+..|++..+
T Consensus 489 Fetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v 521 (660)
T COG5107 489 FETSVER-LEKTQLKRIYDKMIEYESMVGSLNNV 521 (660)
T ss_pred HHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHH
Confidence 9966542 3333 67899999998899988664
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.11 E-value=52 Score=36.21 Aligned_cols=174 Identities=14% Similarity=0.099 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhCCCCCcccccHHHHHHH-----HHcCCChHHHHHHhhhCC---------CCcchHHHHHHHHHhcC-
Q 004480 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQL-----CVNKPDVNLAIRYACIVP---------RADILFCNFVREFGKKR- 235 (750)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~---------~~~~~~~~l~~~~~~~g- 235 (750)
...|.++++...+.+.. .....++.. .....+++.|..+++..- ....+.+.+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~----~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS----EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch----HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 46788888887776522 222233332 234567888888776641 23345566777776643
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHh----hcCChH
Q 004480 236 ----DLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLK 306 (750)
Q Consensus 236 ----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~----~~~~~~ 306 (750)
+.+.|..+|....+.|. |+....-..+..... ..+...|.++|...-..|..+ ...+.+++.. ...+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHH
Confidence 56778888888877654 444433333322222 246778888888888877432 3333333322 224778
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004480 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (750)
Q Consensus 307 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 352 (750)
.|...+.+..+.| .|-..--...+..+.. ++++.+.-.+..+.+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 8888888888877 3332222223333333 666666666666655
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=87.02 E-value=13 Score=31.89 Aligned_cols=84 Identities=11% Similarity=0.114 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 004480 586 YTTAIKVCVRSKRLKQAFSLFEEMKHYQ-----IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLK 660 (750)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 660 (750)
.|+++.-....++..-..++++.+.... -.-+..+|.+++.+.++...-+. -++.+|+-|.+.+.+++...|.
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~--~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKL--TSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHH--HHHHHHHHHHHcCCCCCHHHHH
Confidence 4555555555555555555555553110 02355667788887755543222 2566777777777788888888
Q ss_pred HHHHHHHhhhh
Q 004480 661 ELIEEWCEGVI 671 (750)
Q Consensus 661 ~li~~~~~~~~ 671 (750)
.+|++..+|..
T Consensus 120 ~li~~~l~g~~ 130 (145)
T PF13762_consen 120 CLIKAALRGYF 130 (145)
T ss_pred HHHHHHHcCCC
Confidence 88887777633
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.00 E-value=0.44 Score=29.16 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=12.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHH
Q 004480 218 PRADILFCNFVREFGKKRDLVSAL 241 (750)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~A~ 241 (750)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344445555555555555555543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.10 E-value=63 Score=36.12 Aligned_cols=218 Identities=12% Similarity=0.161 Sum_probs=96.1
Q ss_pred ccccHHHHHHHHHcCCChHHHHHHh----hhCCCCcchHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHH-
Q 004480 190 ELDEEFRIVQLCVNKPDVNLAIRYA----CIVPRADILFCNFVREFGKKRD-------LVSALRAYDASKKHLSSPNMY- 257 (750)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~- 257 (750)
+......++-.|.+.|++++|.++. ..+......+...+..|....+ -+.....|++..+.....|+.
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 3445667888999999999999998 5566666777777887776532 234555566655543322432
Q ss_pred --HHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCccHHHHHHHHHhhcC-----------ChHHHHHHHHHHHHcCCCCC
Q 004480 258 --ICRTIIDVCGICGDYMKSR-AIYEDLRSQNVTLNIYVFNSLMNVNAH-----------DLKFTLEVYKNMQKLGVMAD 323 (750)
Q Consensus 258 --~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~ll~~~~~-----------~~~~a~~~~~~m~~~g~~~~ 323 (750)
+|..+. ++.-...-. .+.. .-+.+.|--|.-.... .+++......+.-+.-+.+
T Consensus 190 ~AvY~ilg----~cD~~~~~~~~V~~-------tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~- 257 (613)
T PF04097_consen 190 RAVYKILG----RCDLSRRHLPEVAR-------TIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA- 257 (613)
T ss_dssp HHHHHHHH----T--CCC-S-TTC---------SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-
T ss_pred HHHHHHHh----cCCccccchHHHhC-------cHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-
Confidence 333332 221100000 1110 1112233333322111 1112222222222222333
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCC-CCCHHHHH
Q 004480 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TPNTITWS 402 (750)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~ 402 (750)
....-.....+.-.|+++.|.+.+-.... ...|.+.+...+.-|.-.+ .....-..+..... .|...-+.
T Consensus 258 ~~~p~~Yf~~LlLtgqFE~AI~~L~~~~~------~~~dAVH~AIaL~~~gLL~---~~~~~~~~lls~~~~~~~~ln~a 328 (613)
T PF04097_consen 258 GSNPLLYFQVLLLTGQFEAAIEFLYRNEF------NRVDAVHFAIALAYYGLLR---VSDSSSAPLLSVDPGDPPPLNFA 328 (613)
T ss_dssp ------HHHHHHHTT-HHHHHHHHHT--T-------HHHHHHHHHHHHHTT---------------------------HH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHhhcc------CcccHHHHHHHHHHcCCCC---CCCccccceeeecCCCCCCcCHH
Confidence 11222345566778999999998876222 3455555555554433222 11111133332211 11225678
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHcC
Q 004480 403 SLINACAN---AGLVEQAMHLFEEMLQAG 428 (750)
Q Consensus 403 ~li~~~~~---~g~~~~a~~~~~~m~~~~ 428 (750)
.||..|.+ ..+..+|.++|--+....
T Consensus 329 rLI~~Y~~~F~~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 329 RLIGQYTRSFEITDPREALQYLYLICLFK 357 (613)
T ss_dssp HHHHHHHHTTTTT-HHHHHHHHHGGGGS-
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHcC
Confidence 88888876 467888998888776543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.88 E-value=5.8 Score=41.92 Aligned_cols=153 Identities=10% Similarity=0.034 Sum_probs=93.1
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHhcCCCccccccchhhhhhH
Q 004480 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (750)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~ 159 (750)
.+.-+|+++.|...+....+. .. ..++.-+-++|-.++|+++ ...|+. -+...+
T Consensus 595 t~vmrrd~~~a~~vLp~I~k~--~r------------t~va~Fle~~g~~e~AL~~-------s~D~d~-----rFelal 648 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIPKE--IR------------TKVAHFLESQGMKEQALEL-------STDPDQ-----RFELAL 648 (794)
T ss_pred HHhhhccccccccccccCchh--hh------------hhHHhHhhhccchHhhhhc-------CCChhh-----hhhhhh
Confidence 455578888777655444321 11 1122224456666655544 233332 344444
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHH
Q 004480 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS 239 (750)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 239 (750)
+ .|+.+.|.++..+ .++..-|..|+.+....+++..|.+.|....+ |..|+-.+...|+-+.
T Consensus 649 ~-------lgrl~iA~~la~e-------~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 649 K-------LGRLDIAFDLAVE-------ANSEVKWRQLGDAALSAGELPLASECFLRARD----LGSLLLLYTSSGNAEG 710 (794)
T ss_pred h-------cCcHHHHHHHHHh-------hcchHHHHHHHHHHhhcccchhHHHHHHhhcc----hhhhhhhhhhcCChhH
Confidence 4 6888888887654 33445588888888889999988888876543 6666677777777776
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004480 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (750)
...+-....+.|. .|.-.-+|...|+++++.+++.+-
T Consensus 711 l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 711 LAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 6666555555443 222333456678888888877643
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.84 E-value=36 Score=32.28 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=43.7
Q ss_pred hcCChHHHHHHHHHHHHhcCChhhHHhhhhHHHHHHHHHhhhhcCchhHHHHHHHHHHh
Q 004480 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (750)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (750)
+....++|+.-|++.++..+.-..|. ..++-.+|....+.|++++..+.|.+++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWG----FKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWG----FKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhH----HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 45688999999999999865555453 45667788889999999999998888764
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.42 E-value=5.1 Score=38.71 Aligned_cols=107 Identities=12% Similarity=0.070 Sum_probs=71.4
Q ss_pred CCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCH
Q 004480 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (750)
Q Consensus 319 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 398 (750)
|.+....+...++..-....+++.+...+-.+++..... ..++... .+.++ ++..-+.++++.++..=+..|+-||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~-~~~~~~~-~~~ir-lllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAW-YLRNWTI-HTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchh-hhccccH-HHHHH-HHHccChHHHHHHHhCcchhccccch
Confidence 445555666666666666677788777776665421111 1122111 22222 22334566888888888888999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004480 399 ITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (750)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 428 (750)
++++.+|+.+.+.+++.+|.++.-.|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=84.14 E-value=24 Score=29.60 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=31.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004480 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429 (750)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 429 (750)
....+..+...|+-+.-.+++..+.+. -.++....-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455555566666666666655532 244555555566666666666666666666665553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.32 E-value=2.4 Score=27.07 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVS 100 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (750)
..++..++..+...|++++|+.++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457889999999999999999999999876
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=82.78 E-value=1.1e+02 Score=36.07 Aligned_cols=114 Identities=13% Similarity=0.140 Sum_probs=76.1
Q ss_pred CCCHhhHH----HHHHHHHHcCChHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCCC
Q 004480 321 MADMASYN----ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (750)
Q Consensus 321 ~~~~~~~~----~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 396 (750)
.|+...+. +..+-+.....+++|.-.|+..-+. .--+.+|..+|+|.+|+.+-.++... .
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-------------ekAl~a~~~~~dWr~~l~~a~ql~~~---~ 995 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-------------EKALKAYKECGDWREALSLAAQLSEG---K 995 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-------------HHHHHHHHHhccHHHHHHHHHhhcCC---H
Confidence 45544444 4444455667788887777765432 23466788899999999999887532 1
Q ss_pred CHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004480 397 NTI--TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (750)
Q Consensus 397 ~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 458 (750)
|.. +-..|+.-+...++.-+|-++..+.... ..-.+..|++...|++|.++-..
T Consensus 996 de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 996 DELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 222 2356788888899998888888877543 23345566777788888877654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.52 E-value=3.6 Score=24.82 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004480 585 AYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (750)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (750)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.39 E-value=31 Score=29.69 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=37.6
Q ss_pred HcCChHHHHHHHHHHHHhhhcCCCccC---HHHHHHHHHHHHhccCHHHHHHHHHHHHHCC
Q 004480 336 LAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (750)
Q Consensus 336 ~~g~~~~A~~~~~~~~~~~~~g~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (750)
..++.+++..+++.+.- +.|+ ..++...+ +...|+|++|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrv------LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV------LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHH------hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 47888999999988876 3444 34455444 778899999999999988764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=81.33 E-value=16 Score=28.73 Aligned_cols=86 Identities=10% Similarity=-0.051 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhcCChHHHHHHHHHH
Q 004480 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNM 315 (750)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m 315 (750)
..++|..+-+.+...+-. ...+--+-+..+...|+|++|..+.+.+ ..||...|-++-....|-.+....-+.+|
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEWRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 345555555555443211 1111112223466788888888877665 47888888888887777777777777777
Q ss_pred HHcCCCCCHhhH
Q 004480 316 QKLGVMADMASY 327 (750)
Q Consensus 316 ~~~g~~~~~~~~ 327 (750)
...| .|....|
T Consensus 95 a~sg-~p~lq~F 105 (115)
T TIGR02508 95 AASG-DPRLQTF 105 (115)
T ss_pred HhCC-CHHHHHH
Confidence 7666 3433333
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.14 E-value=11 Score=33.93 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=29.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004480 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (750)
Q Consensus 227 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (750)
|.......|.+++|+..++.....+. .......-.+++...|+-++|+.-|.+....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 44455555666666666655443211 11122333445556666666666666655553
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.25 E-value=2.6 Score=25.06 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=25.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 004480 73 YYADMASKLAKDGRLEEFAMIVESVVVSE 101 (750)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 101 (750)
++..++..+.+.|++++|...|+.+++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45577888999999999999999999883
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.9 bits (190), Expect = 7e-15
Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 7/144 (4%)
Query: 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE---DGMSPDVVAYTTAI 590
A + LS C + + A +L + + Y +
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172
Query: 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHE-VQQCLAVYQDMWK 649
R K+ + +K + P+L++Y L+ R +++CL + M +
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL---EQMSQ 229
Query: 650 AGYKANDTYLKELIEEWCEGVIQD 673
G K + L+ E +
Sbjct: 230 EGLKLQALFTAVLLSEEDRATVLK 253
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.5 bits (176), Expect = 3e-13
Identities = 49/364 (13%), Positives = 102/364 (28%), Gaps = 54/364 (14%)
Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
QMA +++ A +P + L+ ++ + QA Q
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
+ C+ Q A L K K
Sbjct: 134 FKCCLLTDQLPLAHHLL--------------------VVHHGQRQKRKL----------- 162
Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
T YN +M + + ++ ++ GL+P+ +S+ +
Sbjct: 163 -------------LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 558 CGGSGNVEGALQ-ILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616
G G ++ L+ M ++G+ + + R+ LK + P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 617 NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYK-----ANDTYLKELIEEWCEGVI 671
V LLR + + + K +E+
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 329
Query: 672 QDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENLAIDLRGLTKVEARIIVLAV 731
+ K+ + TL + ++L K L++ E L ++ R +V +
Sbjct: 330 EVKHARKTLKTLRDQWEKALCRALRETK--NRLEREVYEGRFSLYPFLCLLDEREVVRML 387
Query: 732 LRMM 735
L+++
Sbjct: 388 LQVL 391
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.9 bits (138), Expect = 9e-09
Identities = 25/272 (9%), Positives = 65/272 (23%), Gaps = 13/272 (4%)
Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV---KEDMLSAGVTPNTITWSSLIN 406
++ L K +A + +++++
Sbjct: 114 PSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML 173
Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
A G ++ +++ + AG P+ LQ Q Q+
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC------LEQM 227
Query: 467 ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
+ + +D+ ++ + V + P T +L
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL----PPPVNTSKLLRDVYA 283
Query: 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAY 586
D ++ + + + +VE K ++ + +
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRD 343
Query: 587 TTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618
+C + K + + P L
Sbjct: 344 QWEKALCRALRETKNRLEREVYEGRFSLYPFL 375
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.3 bits (126), Expect = 3e-07
Identities = 26/180 (14%), Positives = 55/180 (30%), Gaps = 8/180 (4%)
Query: 260 RTIIDVCGICGDYMKSRAI---YEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKN 314
C + + + + R + L + ++N++M A F + V
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
++ G+ D+ SY L+ E ++ + +G+ +F + ++
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC--LEQMSQEGLKLQALF-TAVLLSEED 247
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
A + KVK P + S L+ L + C Q
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 2e-12
Identities = 95/614 (15%), Positives = 177/614 (28%), Gaps = 153/614 (24%)
Query: 221 DILFCN---FVREFGKKRDLVSALRAYDASK--KH-LSSPNMYICRTIIDVCGICGDYMK 274
DIL FV F K D+ ++ + + H + S +
Sbjct: 20 DILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKD---------------AVSG 63
Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
+ ++ L S+ + + F + V + KF + K Q+ Y
Sbjct: 64 TLRLFWTLLSKQEEM-VQKF--VEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRL 119
Query: 335 CLAGNTVLAQ-EIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
N V A+ + +L+ + L +L I V K W +AL V
Sbjct: 120 Y-NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQ 177
Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
I W +L N + ++E L ++ + NI L+ + + Q
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHSIQ-AEL 234
Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEH--------------KDKQSITNTPNFVP 498
RL +S + L + N + + K +T+ +
Sbjct: 235 RRLLKSKPYENCLLVL--------LNVQNAKAWNAFNLSCKILLTTRFK-QVTDFLSAAT 285
Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
+H S + P ++L+K D R + L E+ T +P +S +I
Sbjct: 286 TTHISLDHHSMTLTPDEVK-SLLLK--YLD-CRPQDLPREVLTT--NPRRLS---II--- 333
Query: 559 GGSGNVEGALQILKIMREDG-MSPDVVAYTTAIKVCVRS------KRLKQAFSLFEE--- 608
+ D + TT I+ + +++ S+F
Sbjct: 334 -------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 609 ------------MKHY---QIQPNLVTYITLL---RARSRYGSLHEVQ------------ 638
+ + L Y +L+ S S+ +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTI-SIPSIYLELKVKLENEYA 444
Query: 639 ---QCLAVYQ-----DMWKAGYKANDTY--------LK--ELIEEWCE--------GVIQ 672
+ Y D D Y LK E E ++
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 673 DKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAA--ENLAIDLRG-LTKVEARIIV- 728
K ++ T + S L+ ++ + E L + L K+E +I
Sbjct: 505 QKIRHDS--TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 729 --LAVLR--MMKEN 738
+LR +M E+
Sbjct: 563 KYTDLLRIALMAED 576
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 3e-11
Identities = 80/514 (15%), Positives = 169/514 (32%), Gaps = 116/514 (22%)
Query: 16 VATQTRLYNHRNKPNKHPVTKLFPL----ASSSSLSSIP--TVH----SSQTALLSTVRR 65
+ + RLYN K+ V++L P + L + S +T + V
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 66 DLS--SRND---YYADMASKLAKDGRLE---EFAMIVESVVVSEGNVSKFASMLSLEMVA 117
+ D ++ ++ + + + LE + ++ S + S L + +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQ 231
Query: 118 SGIVKSIREGR-IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLL---DSGEVEM 173
+ + + ++ +C++ VL + F+ S C+ LL +
Sbjct: 232 AELRRLLKSKPYENCLL-VLLNVQNAKA--WNAFNLS--------CKILLTTRFKQVTDF 280
Query: 174 FVGLME---VLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC-IVPRADILFCNFVR 229
L+ + + DE ++ ++ +L R PR + +R
Sbjct: 281 LSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIR 338
Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL----RSQ 285
+ D + + K TII+ + + R +++ L S
Sbjct: 339 DGLATWD---NWKHVNCDKLT----------TIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 286 NV---TLNIY-----------VFNSLMN---VNAHDLKFTLEVY----KNMQKLGVMADM 324
++ L++ V N L V + T+ + + KL +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 325 -----ASYNILLKACCLAGNTVLAQE----IYGEVK-HL-EAKGVLKLDVFTYSTIVKVF 373
YNI + ++ Y + HL + ++ +F VF
Sbjct: 446 HRSIVDHYNIPKTFDS---DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-----MVF 497
Query: 374 ADAKWWQMALKVKEDMLS---AGVTPNTIT----WSSLINACANAGLVEQAMHLFEEMLQ 426
D ++ + K++ D + +G NT+ + I C N E+ ++ + L
Sbjct: 498 LDFRF--LEQKIRHDSTAWNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAILDFLP 553
Query: 427 AGCEPN---SQCCNIL---LQACVEACQFDRAFR 454
E N S+ ++L L A EA F+ A +
Sbjct: 554 -KIEENLICSKYTDLLRIALMAEDEAI-FEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 4e-08
Identities = 68/418 (16%), Positives = 123/418 (29%), Gaps = 105/418 (25%)
Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
+ Y I+ VF DA K +DM + ++ I +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI----------------------DH 53
Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV---------ALGEDYDG 474
++ ++ RLF WTL Q L +Y
Sbjct: 54 IIM---SKDAV---------------SGTLRLF--WTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA 534
I + +Q T ++ D+ ++ YN+ R++
Sbjct: 94 LMSPIKT---EQRQPSMMTRMYI-----EQRDRLYNDNQVFAKYNV---------SRLQ- 135
Query: 535 LMNEMRTV--GLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592
++R L P +LID GSG AL + + + +
Sbjct: 136 PYLKLRQALLELRPAKN---VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 593 CVRSKRLKQAFSLFEEMKHYQIQPNLVTY----------ITLLRAR-SRYGSLHEVQQCL 641
L+ L YQI PN + I ++A R + CL
Sbjct: 193 NSPETVLEMLQKLL-----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 642 AVYQDMWKAG-YKANDTYLKELIEEWCEGVIQD-KNQNQGEVTLCRRTNS-QRPQSL-LL 697
V ++ A + A + K L+ + V ++L + + + LL
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 698 EKVA-VHLQKSAAENLAIDLRGLTKVEARIIVLAVLRMMK---ENYS-LGTDEFHIML 750
K Q E L + R L+ I+ +R +N+ + D+ ++
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLS------IIAESIRDGLATWDNWKHVNCDKLTTII 359
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 4e-05
Identities = 41/341 (12%), Positives = 102/341 (29%), Gaps = 103/341 (30%)
Query: 2 RVVFGSSSSSSSAIVATQTRLY---NHRNKPNKHPVTK-LFPLASSSSLSSIP----TVH 53
+++ + + ++ T + +H + K L +P T +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSL 113
+ ++++ RD + D + K ++ I+ES SL
Sbjct: 327 PRRLSIIAESIRDGLATWDNW--------KHVNCDKLTTIIES---------------SL 363
Query: 114 EMVASGIVKSIREGRIDCVV---------GVLKKL-NELGVAPLELFDGSGFKLLKNECQ 163
++ + + + V +L + ++ + + + N+
Sbjct: 364 NVLEPAEYRKMFD---RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--------NKLH 412
Query: 164 R--LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY---ACIVP 218
+ L++ E + + + E + +L+ E+ + + V+ N+ + I P
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELK---VKLENEYALHRSIVDH--YNIPKTFDSDDLIPP 467
Query: 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
D F + + + HL + R +
Sbjct: 468 YLDQYFYSHI--------------GH-----HLKNIEHP------------ERMTLFRMV 496
Query: 279 YEDLR-----SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314
+ D R ++ + S++N LKF YK
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKF----YKP 532
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 750 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.72 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.71 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.53 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.47 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.33 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.31 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.27 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.18 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.14 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.13 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.96 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.79 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.73 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.48 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.37 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.32 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.15 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.97 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.9 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.85 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.81 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.77 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.75 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.74 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.67 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.66 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.66 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.58 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.52 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.43 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.4 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.33 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.25 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.2 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.18 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.94 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.39 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.39 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.01 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 84.72 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 80.32 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.6e-23 Score=147.48 Aligned_cols=318 Identities=14% Similarity=0.094 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHH
Q ss_conf 1599999999823998999999999985899988998999999998229988999999999857998669999999-975
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL-MNV 300 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-l~~ 300 (750)
.++..++..|...|++++|+..+........ .+..............+....+...................... ...
T Consensus 68 ~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (388)
T d1w3ba_ 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999996420002222222221211222-222222222222222222222222211122222222222222222221
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 05990799999999998399978765999999999819937999999998976660987667877999999998125899
Q 004480 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (750)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~ 380 (750)
..+....+...+....... +.+...+..+...+...|+.+.|...++..... -+.+...+..+...+...|+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~ 220 (388)
T d1w3ba_ 147 ALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHCCCCHH
T ss_conf 1000135678888740258-610689986363010247199999999999984-----9464999999715522005299
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99999999998999889998999999999349999999999999985999898999999999997099679999999974
Q 004480 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (750)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~~~ 460 (750)
+|...+....... ..+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++...
T Consensus 221 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 298 (388)
T d1w3ba_ 221 RAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999857775-5479999999999998789999999999999849-9989999999999997487999999998654
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 10011235777788313332123210013468888667876432122278786599999999999711799999999999
Q 004480 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMR 540 (750)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~ 540 (750)
..
T Consensus 299 ~~------------------------------------------------------------------------------ 300 (388)
T d1w3ba_ 299 RL------------------------------------------------------------------------------ 300 (388)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
T ss_conf 04------------------------------------------------------------------------------
Q ss_pred HCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CH
Q ss_conf 85999788899999999973999789999999999899999-99999999999998299889999999998799989-99
Q 004480 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP-DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NL 618 (750)
Q Consensus 541 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 618 (750)
.+.+...+..+...+...|++++|...+++..+. .| +...+..+...|.+.|++++|.+.|++..+ +.| +.
T Consensus 301 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~ 373 (388)
T d1w3ba_ 301 ---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFA 373 (388)
T ss_dssp ---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCH
T ss_pred ---CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
T ss_conf ---8730010157999999878999999999999986--889899999999999985999999999999997--099989
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999981499
Q 004480 619 VTYITLLRARSRYGS 633 (750)
Q Consensus 619 ~t~~~li~~~~~~g~ 633 (750)
..|..+...+.+.|+
T Consensus 374 ~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 374 DAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.2e-21 Score=140.69 Aligned_cols=379 Identities=14% Similarity=0.062 Sum_probs=209.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 99877514882789999999998128923677554699999789853202763279999999876099863224521246
Q 004480 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (750)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~ 156 (750)
++..+-+.|++++|+..++++++. +|+.... +..+...+...|++++|+..++++++. .|+.. ..+.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~------~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~---~a~~ 71 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGV------LLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLA---EAYS 71 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH---HHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH---HHHH
T ss_conf 999999869999999999999986--8998999------999999999869999999999999985--99989---9999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH----HCCCCCCHHHHHHHHHH
Q ss_conf 66999987620680999999999998279997652518899999974999478999862----17998415999999998
Q 004480 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC----IVPRADILFCNFVREFG 232 (750)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~~~~~~~l~~~~~ 232 (750)
.+.. .+...|++++|+..+....... +.....................+..... ..+..............
T Consensus 72 ~l~~---~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (388)
T d1w3ba_ 72 NLGN---VYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHH---HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHH---HHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999---9642000222222222121122--2222222222222222222222222211122222222222222222221
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 23998999999999985899988998999999998229988999999999857998669999999975059907999999
Q 004480 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (750)
Q Consensus 233 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (750)
..+....+...+.......+ .+...+..+...+...|++++|...++...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al----------------------------- 196 (388)
T d1w3ba_ 147 ALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAV----------------------------- 196 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------------------------
T ss_pred CCCHHHHHHHHHHHHHCCCC-CHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-----------------------------
T ss_conf 10001356788887402586-106899863630102471999999999999-----------------------------
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99998399978765999999999819937999999998976660987667877999999998125899999999999989
Q 004480 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (750)
Q Consensus 313 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (750)
... +.+...+..+...+...|++++|...++..... .+.+...+..+...+.+.|++++|...|++..+.
T Consensus 197 ----~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 266 (388)
T d1w3ba_ 197 ----TLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp ----HHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----HHC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf ----849-464999999715522005299999999985777-----5547999999999999878999999999999984
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99889998999999999349999999999999985999898999999999997099679999999974100112357777
Q 004480 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472 (750)
Q Consensus 393 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~ 472 (750)
.. -+...+..+...+...|++++|...++...... +.+...+..+...+.+.|++++|...+++.....
T Consensus 267 ~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------- 335 (388)
T d1w3ba_ 267 QP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--------- 335 (388)
T ss_dssp CS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC---------
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---------
T ss_conf 99-989999999999997487999999998654048-7300101579999998789999999999999868---------
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 88313332123210013468888667876432122278786599999999999711799999999999859997888999
Q 004480 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWT 552 (750)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~ 552 (750)
| -+..++.
T Consensus 336 ----------------------------------------p--------------------------------~~~~~~~ 343 (388)
T d1w3ba_ 336 ----------------------------------------P--------------------------------EFAAAHS 343 (388)
T ss_dssp ----------------------------------------T--------------------------------TCHHHHH
T ss_pred ----------------------------------------C--------------------------------CCHHHHH
T ss_conf ----------------------------------------8--------------------------------9899999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCC
Q ss_conf 999999739997899999999998999999-9999999999998299
Q 004480 553 ILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKR 598 (750)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 598 (750)
.+...|...|++++|...|++..+. .|+ ...|..+...|.+.||
T Consensus 344 ~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 344 NLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
T ss_conf 9999999859999999999999970--99989999999999998589
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=9.7e-14 Score=93.99 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 79999999981258999999999999899988999899999999934999999999999998599989899999999999
Q 004480 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (750)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 444 (750)
.+..+...+...|++++|...+++...... -+...|..+...+...|++++|...+++..+.. +-+...+..+..+|.
T Consensus 174 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 251 (323)
T d1fcha_ 174 VQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCI 251 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HCCHHHHHHHHHHHH
T ss_conf 110368888888877550021112222222-221110133301221111013788877899884-324999999999999
Q ss_pred HHCCHHHHHHHHHH
Q ss_conf 70996799999999
Q 004480 445 EACQFDRAFRLFRS 458 (750)
Q Consensus 445 ~~g~~~~A~~l~~~ 458 (750)
+.|++++|...|++
T Consensus 252 ~~g~~~~A~~~~~~ 265 (323)
T d1fcha_ 252 NLGAHREAVEHFLE 265 (323)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
T ss_conf 87899999999999
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1e-13 Score=93.80 Aligned_cols=98 Identities=17% Similarity=0.105 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 87659999999998199379999999989766609876678779999999981258999999999999899988999899
Q 004480 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (750)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (750)
+...+..+...+...|++++|...++..... .+.+...|..+...+...|++++|.+.|++..+.. +-+...+.
T Consensus 171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~ 244 (323)
T d1fcha_ 171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRY 244 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-----CCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HCCHHHHH
T ss_conf 2211103688888888775500211122222-----22221110133301221111013788877899884-32499999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999934999999999999998
Q 004480 403 SLINACANAGLVEQAMHLFEEMLQ 426 (750)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~ 426 (750)
.+..+|.+.|++++|+..|++..+
T Consensus 245 ~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 245 NLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999987899999999999997
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=2.9e-11 Score=79.30 Aligned_cols=183 Identities=12% Similarity=0.009 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 44689999877514882789999999998128923677554699999789853202763279999999876099863224
Q 004480 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
.......+..+...|++++|+..+++.++..++..... ...++..+...+...|++++|+..|+++.+.. +....
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~--~~~~~ 86 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS---RIVATSVLGEVLHCKGELTRSLALMQQTEQMA--RQHDV 86 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHHCC
T ss_conf 99999999999988899999999999985486899679---99999999999998799999999999999998--75011
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 52124666999987620680999999999998279997652518899999974999478999862179984159999999
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (750)
.......+......+...|++..+...+............. .. +.....+..+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~-------------~~-----------~~~~~~~~~la~~ 142 (366)
T d1hz4a_ 87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE-------------QL-----------PMHEFLVRIRAQL 142 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT-------------TS-----------THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------HH-----------HHHHHHHHHHHHH
T ss_conf 48999999888788788888999998899999986750341-------------25-----------6788899888789
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 98239989999999999858999----88998999999998229988999999999
Q 004480 231 FGKKRDLVSALRAYDASKKHLSS----PNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (750)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 282 (750)
+...|+++.+...+......... .....+......+...+++..+...+.+.
T Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 198 (366)
T d1hz4a_ 143 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 198 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99814566668999998887663002468999988888887646678888999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.8e-11 Score=79.42 Aligned_cols=174 Identities=9% Similarity=-0.026 Sum_probs=106.1
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Q ss_conf 2023587521446899998775148827899999999981289236775546999997898532027-632799999998
Q 004480 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKL 139 (750)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~g-~~~~A~~~l~~~ 139 (750)
..+..+|+. ..++..+...+.+.+++++|+..+++++.. +|..++.....+.+ +...| ++++|+..++.+
T Consensus 34 ~~I~~~p~~-~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~------l~~l~~~~~eal~~~~~a 104 (315)
T d2h6fa1 34 VQIIYSDKF-RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVL------LKSLQKDLHEEMNYITAI 104 (315)
T ss_dssp SEECCCHHH-HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH------HHHHCCCHHHHHHHHHHH
T ss_conf 352269779-999999999999588669999999999987--98876999999999------998376799999999999
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 76099863224521246669999876206809999999999982799976525188999999749994789998621799
Q 004480 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (750)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 219 (750)
++ ..|+.. ..+ ......+...|++++|+..+++++... |.+.
T Consensus 105 l~--~~p~~~---~a~---~~~~~~~~~l~~~~eAl~~~~kal~~d--p~n~---------------------------- 146 (315)
T d2h6fa1 105 IE--EQPKNY---QVW---HHRRVLVEWLRDPSQELEFIADILNQD--AKNY---------------------------- 146 (315)
T ss_dssp HH--HCTTCH---HHH---HHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCH----------------------------
T ss_pred HH--HHHHHH---HHH---HHHHHHHHHHCCHHHHHHHHHHHHHHH--HCCH----------------------------
T ss_conf 98--877422---689---887588885053788998875554321--0046----------------------------
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHH
Q ss_conf 8415999999998239989999999999858999889989999999982299------8899999999985
Q 004480 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD------YMKSRAIYEDLRS 284 (750)
Q Consensus 220 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~m~~ 284 (750)
.+|..++..+...+++++|+..|+.+.+.++ .+..+|+.+..++.+.+. +++|+..+....+
T Consensus 147 --~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~ 214 (315)
T d2h6fa1 147 --HAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 214 (315)
T ss_dssp --HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf --8899887788888866789999999998797-4499998899999874563102354776799999998
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.1e-08 Score=64.16 Aligned_cols=66 Identities=9% Similarity=-0.113 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 8415999999998239989999999999858999889989999999982299889999999998579
Q 004480 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (750)
Q Consensus 220 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 286 (750)
+..+|..+...+.+.|++++|+..++.+.+..+ .+..+|..+...+...|++++|+..++.+.+..
T Consensus 111 ~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~ 176 (315)
T d2h6fa1 111 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 176 (315)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 226898875888850537889988755543210-046889988778888886678999999999879
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=1.4e-08 Score=63.41 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHCCCH
Q ss_conf 99379999999989766609876678779999999981258999999999999899-988--999899999999934999
Q 004480 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTP--NTITWSSLINACANAGLV 414 (750)
Q Consensus 338 g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~ 414 (750)
|+.+.|..+|+.+... .+.+...|...+..+...|+.+.|..+|++..... ..| ....|...+..-...|+.
T Consensus 183 ~~~~~a~~i~e~~l~~-----~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~ 257 (308)
T d2onda1 183 KDKSVAFKIFELGLKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp CCHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred CCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCH
T ss_conf 5778999999999986-----10038899999999998698689999999999827898689999999999999984999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 004480 415 EQAMHLFEEM 424 (750)
Q Consensus 415 ~~a~~~~~~m 424 (750)
+.+..+++++
T Consensus 258 ~~~~~~~~r~ 267 (308)
T d2onda1 258 ASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=1.6e-08 Score=63.20 Aligned_cols=83 Identities=16% Similarity=0.067 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 5899999999999989998899989999999993499999999999999859-998--9899999999999709967999
Q 004480 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEP--NSQCCNILLQACVEACQFDRAF 453 (750)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~g~~~~A~ 453 (750)
|+.+.|..+|+.+.... +.+...|...+..+.+.|+.+.|..+|++..... ..| ....|...+.--...|+.+.+.
T Consensus 183 ~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~ 261 (308)
T d2onda1 183 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 57789999999999861-00388999999999986986899999999998278986899999999999999849999999
Q ss_pred HHHHHHH
Q ss_conf 9999974
Q 004480 454 RLFRSWT 460 (750)
Q Consensus 454 ~l~~~~~ 460 (750)
.+++++.
T Consensus 262 ~~~~r~~ 268 (308)
T d2onda1 262 KVEKRRF 268 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=2.4e-08 Score=62.07 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=8.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999999999829988999999999
Q 004480 586 YTTAIKVCVRSKRLKQAFSLFEEM 609 (750)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m 609 (750)
+..+...|.+.|+.++|.+.+++.
T Consensus 294 ~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 294 LLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999878999999999999
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.3e-09 Score=69.58 Aligned_cols=236 Identities=10% Similarity=-0.079 Sum_probs=0.0
Q ss_pred HHCCCCHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHCCCHH
Q ss_conf 6206809999999999982799--9765251889999997499947899986217----998415999999998239989
Q 004480 165 LLDSGEVEMFVGLMEVLEEFRL--PVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLV 238 (750)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~ 238 (750)
+....+.+.++..+++++.... .+.....+..++..+.+.|++++|...|... |.+..+++.++..+.+.|+++
T Consensus 9 ~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~ 88 (259)
T d1xnfa_ 9 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 88 (259)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHH
T ss_conf 66057999999999999876336999999999999999998799999999999854349998899960042788877788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999985899988998999999998229988999999999857998-66999999997505990799999999998
Q 004480 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (750)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~a~~~~~~m~~ 317 (750)
+|+..|+++.+..+ .+..++..+..++...|++++|...|+...+.... +....+..+.....+..+....+......
T Consensus 89 ~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 89 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 75234468999876-11115888999999876679999999999865300078889999999885358789999987640
Q ss_pred C-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 3-999787659999999998199379999999989766609876678779999999981258999999999999899988
Q 004480 318 L-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (750)
Q Consensus 318 ~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 396 (750)
. ...+........+......+..+.+...+...... .+....+|..+...+...|++++|...|+......+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 168 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSL-----AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 3144434557788888877777899999999986640-----84509999999999998789999999999999839977
Q ss_pred CHHHHHHHHH
Q ss_conf 9998999999
Q 004480 397 NTITWSSLIN 406 (750)
Q Consensus 397 ~~~~~~~li~ 406 (750)
-.....+++.
T Consensus 243 ~~~~~~a~~~ 252 (259)
T d1xnfa_ 243 FVEHRYALLE 252 (259)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=4.7e-10 Score=72.21 Aligned_cols=267 Identities=8% Similarity=-0.078 Sum_probs=105.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999987751488278999999999812892367755469999----9789853202763279999999876099863224
Q 004480 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMV----ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 75 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~----~~~i~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (750)
..++......+..++|+.++++.+.. +|+.+..+...+.+ ......+...|.+.+|+.+++.+++. .|+..
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~- 107 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSY- 107 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCH-
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH--CCCCH-
T ss_conf 99999986565669999999999998--87858999999999999765003477877899999999999986--88867-
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHH-HHHH
Q ss_conf 521246669999876206809999999999982799976525188999999749994789998621799841599-9999
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC-NFVR 229 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~l~~ 229 (750)
..+.....+... ...++.++|+..+++++... |+....+. ....
T Consensus 108 --~~~~~~~~~~~~-~~~~~~~~a~~~~~~al~~~--------------------------------~~~~~~~~~~~~~ 152 (334)
T d1dcea1 108 --GTWHHRCWLLSR-LPEPNWARELELCARFLEAD--------------------------------ERNFHCWDYRRFV 152 (334)
T ss_dssp --HHHHHHHHHHHT-CSSCCHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHC--------------------------------CHHHHHHHHHHHH
T ss_conf --989886489988-43042899999999998559--------------------------------2121111057899
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHCCCHHHH
Q ss_conf 99823998999999999985899988998999999998229988999999999857998669-99999997505990799
Q 004480 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-YVFNSLMNVNAHDLKFT 308 (750)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~a 308 (750)
.+...+.++.|+..++.+....+ -+..+|+.+..++...|++++|...+...... .|.. ..+... ...+..+.+
T Consensus 153 ~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~--~~l~~~~~a 227 (334)
T d1dcea1 153 AAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKELELVQNA--FFTDPNDQS 227 (334)
T ss_dssp HHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHHHHHHHH--HHHCSSCSH
T ss_pred HHHHCCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--HHHHHHHHHHH--HHHCCHHHH
T ss_conf 98744552899999999887189-87999999999999826889899988776776--89999999999--882441488
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999839997876599999999981993799999999897666098766787799999999812589999999999
Q 004480 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (750)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (750)
...+....... +++...+..+...+...++.++|...+.+.... -+.+...+..+...+...|++++|.+.++.
T Consensus 228 ~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ 301 (334)
T d1dcea1 228 AWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE-----NKWCLLTIILLMRALDPLLYEKETLQYFST 301 (334)
T ss_dssp HHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHCTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999887718-660567887999999986699999999988762-----913799999999999878999999999999
Q ss_pred HHHC
Q ss_conf 9989
Q 004480 389 MLSA 392 (750)
Q Consensus 389 m~~~ 392 (750)
....
T Consensus 302 ai~l 305 (334)
T d1dcea1 302 LKAV 305 (334)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9987
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=2.3e-10 Score=74.02 Aligned_cols=49 Identities=8% Similarity=-0.061 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9899999999998589998899899-9999998229988999999999857
Q 004480 236 DLVSALRAYDASKKHLSSPNMYICR-TIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
+++++...+..+.+..+ ++...+. .....+...+.+++|+..++.....
T Consensus 124 ~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~ 173 (334)
T d1dcea1 124 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (334)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 28999999999985592-121111057899987445528999999998871
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=1.3e-07 Score=57.74 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=7.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999999819937999999998
Q 004480 330 LLKACCLAGNTVLAQEIYGEV 350 (750)
Q Consensus 330 ll~~~~~~g~~~~A~~~~~~~ 350 (750)
+...+...|++++|...|+++
T Consensus 164 la~~~~~~g~y~~A~~~~~~~ 184 (290)
T d1qqea_ 164 CADLKALDGQYIEASDIYSKL 184 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999817399999999999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=4.3e-09 Score=66.48 Aligned_cols=215 Identities=7% Similarity=-0.035 Sum_probs=118.2
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 20235875214468999987751488278999999999812892367755469999978985320276327999999987
Q 004480 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (750)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~g~~~~A~~~l~~~~ 140 (750)
+.+..+|+. ...+..++..+..+|++.+| +++++.. +|........... +. ...+..+.+.++...
T Consensus 11 qA~~l~p~~-a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~-------Lw-~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 11 QAEVLKADM-TDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQD-------LW-NHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHGGG-TCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHH-------HH-HHHTHHHHHHHHHHH
T ss_pred HHHHCCCCC-HHHHHHHHHHHHHHCHHHHH---HHHHHHC--CHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHC
T ss_conf 998719997-99995199999997629999---9999874--9301999857999-------99-999999999999856
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHC--C
Q ss_conf 60998632245212466699998762068099999999999827999765251889999997499947899986217--9
Q 004480 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--P 218 (750)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~ 218 (750)
+....++.......+...+. ...+.++.|+..+..... ..|+....+..++..+...++.+.|...+... +
T Consensus 77 k~~~~~~~~~~~~~~~~~l~-----~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 149 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLE-----AASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY 149 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHH-----HHHHHHHHHHHHHTC---------------------------------CCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 16458437999999999999-----999999999999999878--99113999998579987589999999999988278
Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 98415999999998239989999999999858999889989999999982299889999999998579986699999999
Q 004480 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (750)
Q Consensus 219 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 298 (750)
.....+..++..+...+++++|...|.+..+..+ .+...|+.+...+...|+..+|...|.+..... .|-...+..+.
T Consensus 150 ~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~ 227 (497)
T d1ya0a1 150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ 227 (497)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHH
T ss_conf 8999999999999980247899999999998789-965999999999998699999999999998179-99789999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=2.1e-06 Score=50.65 Aligned_cols=90 Identities=9% Similarity=-0.087 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH
Q ss_conf 1993799999999897666098766-7877999999998125899999999999989998899------98999999999
Q 004480 337 AGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT------ITWSSLINACA 409 (750)
Q Consensus 337 ~g~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~ 409 (750)
.|++++|...+.+...+......++ ...++..+...+...|++++|...|++.......... ..+...+..+.
T Consensus 131 ~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (290)
T d1qqea_ 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210 (290)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 87899998899999999873376033346889999999981739999999999998681332455569999999999999
Q ss_pred HCCCHHHHHHHHHHHHH
Q ss_conf 34999999999999998
Q 004480 410 NAGLVEQAMHLFEEMLQ 426 (750)
Q Consensus 410 ~~g~~~~a~~~~~~m~~ 426 (750)
..++++.|...++...+
T Consensus 211 ~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 211 AATDAVAAARTLQEGQS 227 (290)
T ss_dssp HTTCHHHHHHHHHGGGC
T ss_pred HHCCHHHHHHHHHHHHH
T ss_conf 84659999999999997
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.1e-07 Score=58.23 Aligned_cols=43 Identities=12% Similarity=-0.036 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 789999999998128923677554699999789853202763279999999876
Q 004480 88 EEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (750)
Q Consensus 88 ~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~g~~~~A~~~l~~~~~ 141 (750)
-+|.+.++++.+. +|+....... +...+...+++.+| |++++.
T Consensus 3 ~eA~q~~~qA~~l--~p~~a~a~~~------la~~~~~~~~l~ea---ye~~i~ 45 (497)
T d1ya0a1 3 LQSAQYLRQAEVL--KADMTDSKLG------PAEVWTSRQALQDL---YQKMLV 45 (497)
T ss_dssp HHHHHHHHHHHHH--HGGGTCSSSC------SSSSHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHC--CCCCHHHHHH------HHHHHHHHCHHHHH---HHHHHH
T ss_conf 8999999999871--9997999951------99999997629999---999987
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1.6e-05 Score=45.36 Aligned_cols=151 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 999999997505-9907999999999983999787659999999998199379999999989766609876678779999
Q 004480 291 IYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (750)
Q Consensus 291 ~~~~~~ll~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~l 369 (750)
...|+--+.... ++++.|++.|..+. +++...+..+...+...|++++|...|++..++ -+.+...|..+
T Consensus 6 ~~l~~~g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-----dp~~~~a~~~~ 76 (192)
T d1hh8a_ 6 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-----DKHLAVAYFQR 76 (192)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCC----CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_conf 999999999998779999999998648----988999999999999858914678789999998-----55234667889
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 99998125899999999999989998899---------------989999999993499999999999999859998989
Q 004480 370 VKVFADAKWWQMALKVKEDMLSAGVTPNT---------------ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (750)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~---------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 434 (750)
..++.+.|++++|...|++.......... .++..+..++.+.|++++|.+.+....+....+...
T Consensus 77 g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~ 156 (192)
T d1hh8a_ 77 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHS 156 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGG
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99998542499999999999986726736789986654363058899999999999789999999999998369980407
Q ss_pred HHHHHHHHHHHHCCHH
Q ss_conf 9999999999709967
Q 004480 435 CCNILLQACVEACQFD 450 (750)
Q Consensus 435 ~~~~ll~~~~~~g~~~ 450 (750)
.....+..+.+....+
T Consensus 157 ~~~~Al~~~~~~~~~~ 172 (192)
T d1hh8a_ 157 KIDKAMECVWKQKLYE 172 (192)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999998361088
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=3.8e-06 Score=49.11 Aligned_cols=148 Identities=6% Similarity=-0.073 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 52144689999877514882789999999998128923677554699999789853202763279999999876099863
Q 004480 68 SSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPL 147 (750)
Q Consensus 68 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~g~~~~A~~~l~~~~~~~~~p~ 147 (750)
+++...+...+..+.+.|++++|+..|++++.. +|.....+...+.+ |.+.|++++|+..|+++++ +.|
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~------y~~~~~~~~Ai~~~~~al~--l~p- 69 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALC------YLKMQQPEQALADCRRALE--LDG- 69 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHH------HHHTTCHHHHHHHHHHHTT--SCT-
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH--HCC-
T ss_conf 964999999999999869999999999999985--99989999817898------7410000012478888887--188-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 22452124666999987620680999999999998279997652518899999974999478999862179984159999
Q 004480 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227 (750)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l 227 (750)
.....+......+...|++++|+..|++++... |.....+...+..+........+.................
T Consensus 70 -----~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (201)
T d2c2la1 70 -----QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSY 142 (201)
T ss_dssp -----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHH
T ss_pred -----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----738999999999998799999999999998749--5567989999999999988868999999998655777899
Q ss_pred HHHHHH
Q ss_conf 999982
Q 004480 228 VREFGK 233 (750)
Q Consensus 228 ~~~~~~ 233 (750)
......
T Consensus 143 ~~~~~~ 148 (201)
T d2c2la1 143 LTRLIA 148 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999987
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=4.7e-05 Score=42.61 Aligned_cols=90 Identities=11% Similarity=0.100 Sum_probs=37.1
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99998199379999999989766609876678779999999981258999999999999899988999899999999934
Q 004480 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (750)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 411 (750)
+.+.+.|++++|...|.+...+ -+.+...|..+..++...|++++|...|+..++... -+...|..++.++...
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHC
T ss_conf 9999958999999986602110-----001133324567888740542128888999998754-4668779999999994
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 9999999999999985
Q 004480 412 GLVEQAMHLFEEMLQA 427 (750)
Q Consensus 412 g~~~~a~~~~~~m~~~ 427 (750)
|++++|...+++....
T Consensus 92 g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 92 GKFRAALRDYETVVKV 107 (159)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 9999999989999872
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.15 E-value=7.9e-05 Score=41.29 Aligned_cols=69 Identities=4% Similarity=-0.041 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----CCCCCCH
Q ss_conf 159999999982399899999999998589998899899999999822998899999999985-----7998669
Q 004480 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNI 291 (750)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~ 291 (750)
..+..++..+...|++++|+..++.+....+ -+...|..++.++.+.|+..+|++.|+++.. .|+.|..
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 9999999999887990578999999998498-5199999999999985579999999999999989984899689
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=0.00015 Score=39.72 Aligned_cols=115 Identities=18% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 76599999999981993799999999897666098766787799999999812589999999999998999889998999
Q 004480 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (750)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (750)
..-+..-...+.+.|++++|...|.+.... -+.+...|..+..++...|++++|+..+......+.. +...|..
T Consensus 3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 76 (117)
T d1elwa_ 3 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSR 76 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCC-HHHHHHH
T ss_conf 999999999999969999999999998861-----9960134300011011000011210013467774022-0267788
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999349999999999999985999898999999999997
Q 004480 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (750)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 445 (750)
+..++...|++++|+..|+...+.. +-+...+..+-.+-.+
T Consensus 77 ~g~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~l~~r 117 (117)
T d1elwa_ 77 KAAALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNMEAR 117 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHCC
T ss_conf 9999998127999999999999849-8989999999978384
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.97 E-value=4.2e-05 Score=42.95 Aligned_cols=58 Identities=14% Similarity=0.053 Sum_probs=22.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999877514882789999999998128923677554699999789853202763279999999876
Q 004480 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~g~~~~A~~~l~~~~~ 141 (750)
.++..+.+.|++++|+..+++++.. +|...... ..++..+.+.|++++|+..|+++++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~------~~lg~~~~~~~~~~~A~~~~~~al~ 78 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAW------RSLGLTQAENEKDGLAIIALNHARM 78 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHH------HHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999876058999988610112--11110012------3354564101258774100000111
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.90 E-value=6.4e-05 Score=41.86 Aligned_cols=13 Identities=8% Similarity=0.015 Sum_probs=4.2
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 8099999999999
Q 004480 169 GEVEMFVGLMEVL 181 (750)
Q Consensus 169 g~~~~A~~~~~~~ 181 (750)
|++++|+..+++.
T Consensus 30 g~~~~A~~~~~~a 42 (112)
T d1hxia_ 30 ANLAEAALAFEAV 42 (112)
T ss_dssp TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 6058999988610
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=0.00015 Score=39.62 Aligned_cols=60 Identities=13% Similarity=0.021 Sum_probs=25.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999982399899999999998589998899899999999822998899999999985
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 284 (750)
++.+...|.+.|++++|+..++......+ .+..++..+..++...|++++|...|+...+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998864211011000000010022-3103467779999872229999999999997
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=0.0001 Score=40.68 Aligned_cols=111 Identities=11% Similarity=-0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHCCCCCCCCC
Q ss_conf 8999987751488278999999999812892367755469999978985320276327---9999999876099863224
Q 004480 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDC---VVGVLKKLNELGVAPLELF 150 (750)
Q Consensus 74 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~g~~~~---A~~~l~~~~~~~~~p~~~~ 150 (750)
...++..+...+++++|+..|++.+.. +|.........+.+ +.+.++..+ |+.+|+++++.+..|
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~------L~~s~~~~d~~~Ai~~l~~~l~~~~~~---- 69 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWC------LVRTRYNDDIRKGIVLLEELLPKGSKE---- 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHH------HTTSSSHHHHHHHHHHHHHHTTTSCHH----
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHH------HHHHCCHHHHHHHHHHHHHHHHCCCCC----
T ss_conf 777988736999999999999998832--99989999999999------998512678999999999998606993----
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 52124666999987620680999999999998279997652518899999
Q 004480 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (750)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (750)
.....+......+...|++++|+..|++++... |++..........
T Consensus 70 --~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~--P~~~~A~~l~~~I 115 (122)
T d1nzna_ 70 --EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE--PQNNQAKELERLI 115 (122)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_conf --199999999999999731699999999999769--0989999999999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.77 E-value=0.00058 Score=36.20 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=7.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9987751488278999999999
Q 004480 77 MASKLAKDGRLEEFAMIVESVV 98 (750)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~ 98 (750)
++..+-..|++.+|+..|++..
T Consensus 8 lG~~~~~~~d~~~A~~~~~kAa 29 (265)
T d1ouva_ 8 LGAKSYKEKDFTQAKKYFEKAC 29 (265)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999998779999999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.0002 Score=38.97 Aligned_cols=20 Identities=5% Similarity=-0.079 Sum_probs=6.4
Q ss_pred HHHHCCCHHHHHHHHHHHHH
Q ss_conf 77514882789999999998
Q 004480 80 KLAKDGRLEEFAMIVESVVV 99 (750)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~ 99 (750)
.+...|++++|+..|++++.
T Consensus 13 ~~~~~~~y~~Ai~~y~~al~ 32 (128)
T d1elra_ 13 DAYKKKDFDTALKHYDKAKE 32 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
T ss_conf 99985999999999999988
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.74 E-value=0.00065 Score=35.91 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 599999999823998999999999
Q 004480 223 LFCNFVREFGKKRDLVSALRAYDA 246 (750)
Q Consensus 223 ~~~~l~~~~~~~g~~~~A~~~~~~ 246 (750)
.|..++..|.+.|+..+|++.|++
T Consensus 103 ~~~~l~~al~~~Gr~~eAl~~y~~ 126 (179)
T d2ff4a2 103 LWTQLITAYYLSDRQSDALGAYRR 126 (179)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999999999985579999999999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.67 E-value=0.00073 Score=35.59 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=25.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999982399899999999998589998899899999999822998899999999985
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 284 (750)
++++..+|.+.|++++|+..++......+ .+..+|..+..++...|++++|...|.....
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 98499998776220110002232220131-0488999889999882789999999999998
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.66 E-value=2.5e-05 Score=44.25 Aligned_cols=122 Identities=10% Similarity=-0.067 Sum_probs=49.1
Q ss_pred HCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 81993799999999897666098766787799999999812589999999999998999889998999999999349999
Q 004480 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (750)
Q Consensus 336 ~~g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 415 (750)
+.|++++|...+++..+. -+.|...+..+...++..|++++|...++...+.... +...+..+...+...+..+
T Consensus 8 ~~G~l~eAl~~l~~al~~-----~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKA-----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTCHHHHHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCH
T ss_conf 888999999999999997-----8999999999999999879999999999999986997-3899999999998346637
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 999999999985999898999999999997099679999999974100
Q 004480 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (750)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~ 463 (750)
++..-.......+-.++...+......+...|+.++|...+.+.....
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 899875444203586479999999999996799899999999998339
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.66 E-value=0.00049 Score=36.60 Aligned_cols=60 Identities=12% Similarity=-0.112 Sum_probs=25.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999982399899999999998589998899899999999822998899999999985
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 284 (750)
+.++...+.+.|++++|+..++.+.+..+ .+..+|..+..++...|++++|+..|+...+
T Consensus 80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 80 VLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99899999864021013666554431000-2236777699999980479999999999998
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.58 E-value=0.0011 Score=34.47 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 599999999823998999999999985
Q 004480 223 LFCNFVREFGKKRDLVSALRAYDASKK 249 (750)
Q Consensus 223 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 249 (750)
+|..++.++...|++++|+..|+...+
T Consensus 113 a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 113 ALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 777699999980479999999999998
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.52 E-value=0.00025 Score=38.34 Aligned_cols=118 Identities=14% Similarity=0.040 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHCCCHHH
Q ss_conf 990799999999998399978765999999999819937999999998976660987667-8779999999981258999
Q 004480 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQM 381 (750)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~li~~~~~~g~~~~ 381 (750)
|++++|+..+++..+.. +.|...+..+...++..|++++|...++...++ .|+ ...+..+...+...+..++
T Consensus 10 G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l------~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 10 GQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL------FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 89999999999999978-999999999999999879999999999999986------99738999999999983466378
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9999999998999889998999999999349999999999999985
Q 004480 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (750)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (750)
+..........+..++...+......+...|+.++|...+.++.+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 9987544420358647999999999999679989999999999833
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.43 E-value=0.0018 Score=33.34 Aligned_cols=62 Identities=13% Similarity=-0.031 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 599999999823998999999999985899988998999999998229988999999999857
Q 004480 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (750)
Q Consensus 223 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 285 (750)
++++++..|.+.|++++|+..++...+..+ .+..+|..+..++...|++++|...|+...+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 996199999984653011101000100000-00124677689999968999999999999982
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| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.40 E-value=0.0019 Score=33.10 Aligned_cols=15 Identities=7% Similarity=0.158 Sum_probs=5.9
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 999999999999985
Q 004480 413 LVEQAMHLFEEMLQA 427 (750)
Q Consensus 413 ~~~~a~~~~~~m~~~ 427 (750)
+.+.|...|....+.
T Consensus 197 d~~~A~~~~~~aa~~ 211 (265)
T d1ouva_ 197 NFKEALARYSKACEL 211 (265)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 034445467665303
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| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.33 E-value=0.002 Score=33.01 Aligned_cols=29 Identities=10% Similarity=-0.019 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9999999999982799976525188999999
Q 004480 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (750)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (750)
+++|+..|++.+... |++...+..++.++
T Consensus 57 ~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 57 IQEAITKFEEALLID--PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CHHHHHHHHHHHHH
T ss_conf 888999999988730--12058776689999
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| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.25 E-value=0.00057 Score=36.22 Aligned_cols=31 Identities=13% Similarity=-0.190 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 809999999999982799976525188999999
Q 004480 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (750)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (750)
+.+++|+..++..+... |++...+..++.++
T Consensus 11 ~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l 41 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSN--PLDADNLTRWGGVL 41 (145)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
T ss_conf 36999999999998618--83108999999999
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| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.20 E-value=0.0026 Score=32.35 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=4.1
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 8827899999999
Q 004480 85 GRLEEFAMIVESV 97 (750)
Q Consensus 85 g~~~~A~~~~~~~ 97 (750)
|++++|+..|++.
T Consensus 23 g~y~~Ai~~y~~A 35 (156)
T d2hr2a1 23 GEYDEAAANCRRA 35 (156)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 9999999999999
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| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.18 E-value=0.0035 Score=31.60 Aligned_cols=15 Identities=0% Similarity=0.023 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999998299
Q 004480 584 VAYTTAIKVCVRSKR 598 (750)
Q Consensus 584 ~~~~~li~~~~~~g~ 598 (750)
...+++...|...++
T Consensus 281 ~vn~al~~lyie~~d 295 (336)
T d1b89a_ 281 SVNESLNNLFITEED 295 (336)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCH
T ss_conf 999999999867124
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| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.94 E-value=0.0058 Score=30.29 Aligned_cols=26 Identities=8% Similarity=-0.061 Sum_probs=8.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999823998999999999985
Q 004480 224 FCNFVREFGKKRDLVSALRAYDASKK 249 (750)
Q Consensus 224 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 249 (750)
+..++.++...|++++|...|..+..
T Consensus 101 ~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 101 LYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99889999882789999999999998
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| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.0069 Score=29.83 Aligned_cols=24 Identities=4% Similarity=0.083 Sum_probs=9.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999877514882789999999998
Q 004480 76 DMASKLAKDGRLEEFAMIVESVVV 99 (750)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~ 99 (750)
.++..+.+.|++.+|+..|+++++
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~ 33 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALR 33 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999997799999999999999
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| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.39 E-value=0.014 Score=27.97 Aligned_cols=21 Identities=5% Similarity=-0.099 Sum_probs=7.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999822998899999999
Q 004480 261 TIIDVCGICGDYMKSRAIYED 281 (750)
Q Consensus 261 ~l~~~~~~~g~~~~A~~~~~~ 281 (750)
.+..+|...|++++|+..|++
T Consensus 105 ~~g~~~~~lg~~eeA~~~~~~ 125 (156)
T d2hr2a1 105 SRALALDGLGRGAEAMPEFKK 125 (156)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 269999988888888999999
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| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.01 E-value=0.022 Score=26.80 Aligned_cols=41 Identities=5% Similarity=0.078 Sum_probs=14.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 999998239989999999999858999889989999999982
Q 004480 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (750)
Q Consensus 227 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (750)
++..|...|.+++...+++..... ...+...++.++..|++
T Consensus 105 ~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 105 LINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 145 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH
T ss_conf 999998769859999999999757-74446799999999998
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| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=84.72 E-value=0.58 Score=18.47 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=5.6
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 98999999999985
Q 004480 236 DLVSALRAYDASKK 249 (750)
Q Consensus 236 ~~~~A~~~~~~~~~ 249 (750)
+...|.++|+...+
T Consensus 74 d~~~A~~~~~~aa~ 87 (133)
T d1klxa_ 74 DLRKAAQYYSKACG 87 (133)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC
T ss_conf 35788888750002
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| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=80.32 E-value=0.85 Score=17.46 Aligned_cols=116 Identities=7% Similarity=-0.013 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9937999999998976660987667877999----999998125899999999999989998899989999999993499
Q 004480 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYST----IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (750)
Q Consensus 338 g~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~----li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 413 (750)
.+.+.+...+..... .. ..+...+.. +...+...+..+.+...+......+ .+.......+......++
T Consensus 228 ~d~~~a~~~l~~~~~---~~--~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~ 300 (450)
T d1qsaa1 228 QDAENARLMIPSLAQ---AQ--QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGD 300 (450)
T ss_dssp HCHHHHHHHHHHHHH---HT--TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHH---CC--CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHCCC
T ss_conf 485579999875212---02--35679999999999999987686399999998601234--666999999999988298
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 999999999999859998989999999999970996799999999741
Q 004480 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (750)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~ 461 (750)
...+...+..|.... .....-..-+..++...|+.+.|...|.....
T Consensus 301 ~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 301 RRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 699999998658462-42899999999999983981568999999845
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