Citrus Sinensis ID: 004487
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 749 | 2.2.26 [Sep-21-2011] | |||||||
| Q9S7F4 | 825 | Putative pentatricopeptid | yes | no | 1.0 | 0.907 | 0.606 | 0.0 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.977 | 0.843 | 0.384 | 1e-155 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.923 | 0.886 | 0.371 | 1e-152 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.991 | 0.698 | 0.363 | 1e-148 | |
| Q9FIB2 | 995 | Putative pentatricopeptid | no | no | 0.981 | 0.738 | 0.393 | 1e-147 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.989 | 0.748 | 0.363 | 1e-146 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.890 | 0.932 | 0.375 | 1e-144 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.983 | 0.835 | 0.373 | 1e-143 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.981 | 0.908 | 0.365 | 1e-143 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.850 | 0.857 | 0.384 | 1e-141 |
| >sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 970 bits (2507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/752 (60%), Positives = 584/752 (77%), Gaps = 3/752 (0%)
Query: 1 MPNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLF 60
MP++NTVSTN +ISG+VK+G++++AR+LF++M DRT V+WTIL+G Y++ + F EAFKLF
Sbjct: 74 MPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLF 133
Query: 61 VDM-RTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGY--NSILIICNSLVDS 117
M R+ + PD+VTF TLL GC++ N + QVHA +K G+ N L + N L+ S
Sbjct: 134 RQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKS 193
Query: 118 YCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTF 177
YC++R LDLA +F+E+P+KDSV+FN LITG+ K+GL E+I LF++M+ G +PSDFTF
Sbjct: 194 YCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTF 253
Query: 178 AAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE 237
+ L A VGL D ALG+Q+HA V T F + V N +LD YSKHD V+E R LF EMPE
Sbjct: 254 SGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPE 313
Query: 238 VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQI 297
+D VSYNV+I+ Y+ +QY+ SL FRE+Q FDR FPF+T+LS+ AN LQ+GRQ+
Sbjct: 314 LDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQL 373
Query: 298 HTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNL 357
H Q ++ TA S + V NSLVDMYAKC FEEA+ IF +L +TV WTA+IS YVQKG
Sbjct: 374 HCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLH 433
Query: 358 EEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSAL 417
L LF +M +N+ ADQ+TFA++L+ASA ASL LGKQLH+F+IRSG + NVFSGS L
Sbjct: 434 GAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGL 493
Query: 418 LDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDS 477
+DMYAK GS+KDA+Q F+EMP+RN VSWNALISA A NGD +A + +F M++SG QPDS
Sbjct: 494 VDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDS 553
Query: 478 VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMA 537
VS+L VL+ACSHCG +E+G +YF +M+ Y + PKK+HYA M+D+L R+G F EAEKLM
Sbjct: 554 VSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMD 613
Query: 538 QMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWE 597
+MPFEPDEIMWSSV+N+CRIHKN A++AA++LF MEKLRDAA YV+MSNIYA AG+WE
Sbjct: 614 EMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWE 673
Query: 598 SVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEG 657
V VKKAMRERG++KV AYSWVE+ K+HVF++ND+ HP +EI RKI L E+++EG
Sbjct: 674 KVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREG 733
Query: 658 YKPDTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIK 717
YKPDTS + D DE++K+ESLKYHSERLA+AFALI+TPEG PI+VMKNLRAC DCHAAIK
Sbjct: 734 YKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIK 793
Query: 718 LISKITGREITVRDSSRFHHFKDGFCSCRDFW 749
LISKI REITVRD+SRFHHF +G CSC D+W
Sbjct: 794 LISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust.
Identities = 285/741 (38%), Positives = 444/741 (59%), Gaps = 9/741 (1%)
Query: 12 LISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDP 71
L+ Y+K N R++F+ M +R V+WT LI GY++ + E LF+ M+ +G + P
Sbjct: 134 LVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEG-TQP 192
Query: 72 DYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVF 131
+ TFA L +E +QVH ++K G + + + NSL++ Y K + AR +F
Sbjct: 193 NSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILF 252
Query: 132 KEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIA 191
+ K V++N++I+G+A GL+ EA+ +F M+ + S+ +FA+ + L ++
Sbjct: 253 DKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELR 312
Query: 192 LGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGV-SYNVMITCY 250
Q+H VVK F+ + + AL+ YSK +++A +LF E+ V V S+ MI+ +
Sbjct: 313 FTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGF 372
Query: 251 AWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEV 310
N+ +E++ LF E++ ++F +S +L+ L + ++H Q + T
Sbjct: 373 LQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA----LPVISPSEVHAQVVKTNYERSS 428
Query: 311 KVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRA 370
V +L+D Y K G+ EEA ++F+ + V W+AM++ Y Q G E A+ +F E+ +
Sbjct: 429 TVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKG 488
Query: 371 NISADQATFASILRASAEL-ASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKD 429
I ++ TF+SIL A AS+ GKQ H F I+S S++ SALL MYAK G+++
Sbjct: 489 GIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIES 548
Query: 430 AIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSH 489
A + FK E+++VSWN++IS AQ+G A L F++M + + D V+ + V +AC+H
Sbjct: 549 AEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTH 608
Query: 490 CGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWS 549
GL+EEG +YF+ M + K+ P KEH + MVD+ R+G ++A K++ MP +W
Sbjct: 609 AGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWR 668
Query: 550 SVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609
+++ +CR+HK E + AA+++ M K D+A YV +SN+YA +G W+ ++V+K M ER
Sbjct: 669 TILAACRVHKKTELGRLAAEKIIAM-KPEDSAAYVLLSNMYAESGDWQERAKVRKLMNER 727
Query: 610 GVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSCALHDE 669
V+K YSW+E+K+K + F A D HP ++I K+E+L +K GY+PDTS L D
Sbjct: 728 NVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDI 787
Query: 670 DEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLISKITGREITV 729
D+E K L HSERLAIAF LI TP+GSP+L++KNLR C DCH IKLI+KI REI V
Sbjct: 788 DDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVV 847
Query: 730 RDSSRFHHF-KDGFCSCRDFW 749
RDS+RFHHF DG CSC DFW
Sbjct: 848 RDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 538 bits (1386), Expect = e-152, Method: Compositional matrix adjust.
Identities = 278/749 (37%), Positives = 435/749 (58%), Gaps = 57/749 (7%)
Query: 1 MPNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLF 60
MP ++VS N +ISGY+++G AR+LF+ M +R VSW ++I GY + +A +LF
Sbjct: 90 MPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELF 149
Query: 61 VDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCK 120
M + D ++ T+LSG Y +
Sbjct: 150 EIM-----PERDVCSWNTMLSG-----------------------------------YAQ 169
Query: 121 IRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAA 180
C+D AR VF MP+K+ VS+NAL++ + + EEA LF ++ ++
Sbjct: 170 NGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL----VSWNCL 225
Query: 181 LSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDG 240
L V I RQ F N V +V N ++ Y++ + EAR+LF E P D
Sbjct: 226 LGGFVKKKKIVEARQ---FFDSMN-VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV 281
Query: 241 VSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQ 300
++ M++ Y N +E+ +LF ++ +R++ ++ +L+ +++ +++
Sbjct: 282 FTWTAMVSGYIQNRMVEEARELFDKMP----ERNEVSWNAMLAGYVQGERMEMAKELFD- 336
Query: 301 TIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEA 360
V N+++ YA+CG+ EAK +F + V W AMI+ Y Q G+ EA
Sbjct: 337 ---VMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEA 393
Query: 361 LNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDM 420
L LF++M R ++++F+S L A++ +L LGKQLH +++ G+ + F G+ALL M
Sbjct: 394 LRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLM 453
Query: 421 YAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSL 480
Y K GS+++A FKEM ++IVSWN +I+ +++G + L+ FE M + G +PD ++
Sbjct: 454 YCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATM 513
Query: 481 LSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMP 540
++VLSACSH GL+++G QYF +MTQ Y + P +HYA MVD+L R+G ++A LM MP
Sbjct: 514 VAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMP 573
Query: 541 FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVS 600
FEPD +W +++ + R+H N E A+ AAD++F ME ++ YV +SN+YA +G+W V
Sbjct: 574 FEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEP-ENSGMYVLLSNLYASSGRWGDVG 632
Query: 601 QVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKP 660
+++ MR++GV+KV YSW+E+++K H F+ DE HP+ +EI +E L MKK GY
Sbjct: 633 KLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVS 692
Query: 661 DTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLIS 720
TS LHD +EE K ++YHSERLA+A+ ++ G PI V+KNLR C DCH AIK ++
Sbjct: 693 KTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMA 752
Query: 721 KITGREITVRDSSRFHHFKDGFCSCRDFW 749
+ITGR I +RD++RFHHFKDG CSC D+W
Sbjct: 753 RITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 526 bits (1354), Expect = e-148, Method: Compositional matrix adjust.
Identities = 271/745 (36%), Positives = 434/745 (58%), Gaps = 2/745 (0%)
Query: 5 NTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMR 64
+T N L+S Y GNL +A +F++M R AV++ LI G SQ +A +LF M
Sbjct: 322 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381
Query: 65 TDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCL 124
DG +PD T A+L+ CS T Q+HA K G+ S I +L++ Y K +
Sbjct: 382 LDG-LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADI 440
Query: 125 DLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAG 184
+ A F E ++ V +N ++ + + ++F +MQ P+ +T+ + L
Sbjct: 441 ETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC 500
Query: 185 VGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYN 244
+ L D+ LG Q+H+ ++KTNF N +V + L+D+Y+K + A + D VS+
Sbjct: 501 IRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 560
Query: 245 VMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVT 304
MI Y ++L FR++ + + +S A L+ G+QIH Q V+
Sbjct: 561 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 620
Query: 305 TAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLF 364
S++ N+LV +Y++CG+ EE+ F + W A++S + Q GN EEAL +F
Sbjct: 621 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 680
Query: 365 IEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKS 424
+ M R I + TF S ++A++E A++ GKQ+H+ + ++G+ S +AL+ MYAK
Sbjct: 681 VRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKC 740
Query: 425 GSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVL 484
GS+ DA + F E+ +N VSWNA+I+A +++G L SF+ M+ S +P+ V+L+ VL
Sbjct: 741 GSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVL 800
Query: 485 SACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPD 544
SACSH GL+++G+ YF SM +Y L PK EHY +VD+L R+G A++ + +MP +PD
Sbjct: 801 SACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPD 860
Query: 545 EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKK 604
++W +++++C +HKN+E + AA L ++E D+A YV +SN+YAV+ +W++ ++
Sbjct: 861 ALVWRTLLSACVVHKNMEIGEFAAHHLLELEP-EDSATYVLLSNLYAVSKKWDARDLTRQ 919
Query: 605 AMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSC 664
M+E+GV+K SW+E+K+ +H F D+ HP +EI ++L + + GY D
Sbjct: 920 KMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFS 979
Query: 665 ALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLISKITG 724
L++ E K + HSE+LAI+F L++ P PI VMKNLR C DCHA IK +SK++
Sbjct: 980 LLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSN 1039
Query: 725 REITVRDSSRFHHFKDGFCSCRDFW 749
REI VRD+ RFHHF+ G CSC+D+W
Sbjct: 1040 REIIVRDAYRFHHFEGGACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 524 bits (1349), Expect = e-147, Method: Compositional matrix adjust.
Identities = 295/750 (39%), Positives = 444/750 (59%), Gaps = 15/750 (2%)
Query: 12 LISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDP 71
L+S + KSG+L+ AR++FN M R AV+ L+ G ++ EA KLF+DM + P
Sbjct: 249 LVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSP 308
Query: 72 DYVTFATLLSGCSEPDTANEL-----IQVHADIIKFGYNSILI-ICNSLVDSYCKIRCLD 125
+ ++ LLS E A E+ +VH +I G ++ I N LV+ Y K +
Sbjct: 309 E--SYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIA 366
Query: 126 LARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGV 185
ARRVF M KDSVS+N++ITG + G EA++ + M+ P FT ++LS+
Sbjct: 367 DARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCA 426
Query: 186 GLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNV 245
L LG+Q+H +K NV V+NAL+ LY++ + E RK+F MPE D VS+N
Sbjct: 427 SLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNS 486
Query: 246 MITCYAWNEQ-YKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVT 304
+I A +E+ E++ F Q ++ FS++LS V++ ++G+QIH +
Sbjct: 487 IIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKN 546
Query: 305 TAISEVKVANSLVDMYAKCGRFEEAKEIFANLS-HISTVPWTAMISAYVQKGNLEEALNL 363
E N+L+ Y KCG + ++IF+ ++ V W +MIS Y+ L +AL+L
Sbjct: 547 NIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDL 606
Query: 364 FIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAK 423
M + D +A++L A A +A+L G ++H+ +R+ S+V GSAL+DMY+K
Sbjct: 607 VWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSK 666
Query: 424 SGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLS 482
G L A++ F MP RN SWN++IS A++G + LK FE M G P D V+ +
Sbjct: 667 CGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVG 726
Query: 483 VLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFE 542
VLSACSH GL+EEG ++F SM+ Y L P+ EH++ M D+L R+G D+ E + +MP +
Sbjct: 727 VLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMK 786
Query: 543 PDEIMWSSVINSC-RIH-KNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVS 600
P+ ++W +V+ +C R + + E KKAA+ LF++E +A YV + N+YA G+WE +
Sbjct: 787 PNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEP-ENAVNYVLLGNMYAAGGRWEDLV 845
Query: 601 QVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKP 660
+ +K M++ V+K YSWV +K VH+F A D+ HP + I +K++ L ++M+ GY P
Sbjct: 846 KARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVP 905
Query: 661 DTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGS-PILVMKNLRACTDCHAAIKLI 719
T AL+D ++E K E L YHSE+LA+AF L + PI +MKNLR C DCH+A K I
Sbjct: 906 QTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYI 965
Query: 720 SKITGREITVRDSSRFHHFKDGFCSCRDFW 749
SKI GR+I +RDS+RFHHF+DG CSC DFW
Sbjct: 966 SKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 519 bits (1337), Expect = e-146, Method: Compositional matrix adjust.
Identities = 274/754 (36%), Positives = 443/754 (58%), Gaps = 13/754 (1%)
Query: 2 PNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTIL----IGGYSQKNQFREAF 57
PN+ T+ ISG + A + F + D ++VS I + Y Q+
Sbjct: 244 PNEITLRLLARISG---DDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALL 300
Query: 58 KLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDS 117
K F DM + + D VTF +L+ + D+ QVH +K G + +L + NSL++
Sbjct: 301 KCFADM-VESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINM 359
Query: 118 YCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTF 177
YCK+R AR VF M ++D +S+N++I G A+ GL EA+ LF+++ G KP +T
Sbjct: 360 YCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTM 419
Query: 178 AAALSAGVGLAD-IALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMP 236
+ L A L + ++L +QVH +K N V + FV+ AL+D YS++ C+ EA LF E
Sbjct: 420 TSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF-ERH 478
Query: 237 EVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQ-FPFSTLLSVVANKLDLQIGR 295
D V++N M+ Y + ++LKLF L + +RS F +T+ + G+
Sbjct: 479 NFDLVAWNAMMAGYTQSHDGHKTLKLF-ALMHKQGERSDDFTLATVFKTCGFLFAINQGK 537
Query: 296 QIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKG 355
Q+H I + ++ V++ ++DMY KCG A+ F ++ V WT MIS ++ G
Sbjct: 538 QVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENG 597
Query: 356 NLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGS 415
E A ++F +M + D+ T A++ +AS+ L +L G+Q+H+ ++ ++ F G+
Sbjct: 598 EEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGT 657
Query: 416 ALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP 475
+L+DMYAK GS+ DA FK + NI +WNA++ AQ+G+ + TL+ F+ M G +P
Sbjct: 658 SLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKP 717
Query: 476 DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKL 535
D V+ + VLSACSH GL+ E ++ SM Y ++P+ EHY+ + D L R+G +AE L
Sbjct: 718 DKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENL 777
Query: 536 MAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595
+ M E M+ +++ +CR+ + E K+ A +L ++E L D++ YV +SN+YA A +
Sbjct: 778 IESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPL-DSSAYVLLSNMYAAASK 836
Query: 596 WESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKK 655
W+ + + M+ V+K +SW+E+K+K+H+F +D + QT I RK++++++++K+
Sbjct: 837 WDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQ 896
Query: 656 EGYKPDTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAA 715
EGY P+T L D +EE K +L YHSE+LA+AF L++TP +PI V+KNLR C DCH A
Sbjct: 897 EGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNA 956
Query: 716 IKLISKITGREITVRDSSRFHHFKDGFCSCRDFW 749
+K I+K+ REI +RD++RFH FKDG CSC D+W
Sbjct: 957 MKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 512 bits (1318), Expect = e-144, Method: Compositional matrix adjust.
Identities = 267/711 (37%), Positives = 416/711 (58%), Gaps = 44/711 (6%)
Query: 78 TLLSGCSEPDTANELIQVHADIIK---FGYNSILIICNSLVDSYCKIRCLDLARRVFKEM 134
TL+ + + ++ Q+HA I+ + S I+ + Y ++ L A +FK +
Sbjct: 10 TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIV----ISIYTNLKLLHEALLLFKTL 65
Query: 135 PQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGR 194
+++ ++I F + L +A+ FVEM+ G P F + L + + D+ G
Sbjct: 66 KSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGE 125
Query: 195 QVHAFVVKTNFVENVFVANALLDLYSK-------------------------------HD 223
VH F+V+ +++ NAL+++Y+K
Sbjct: 126 SVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAET 185
Query: 224 CVV-----EARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPF 278
C++ R++F MP D VSYN +I YA + Y+++L++ RE+ T F
Sbjct: 186 CIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTL 245
Query: 279 STLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSH 338
S++L + + +D+ G++IH I S+V + +SLVDMYAK R E+++ +F+ L
Sbjct: 246 SSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYC 305
Query: 339 ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQL 398
+ W ++++ YVQ G EAL LF +M A + F+S++ A A LA+L LGKQL
Sbjct: 306 RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQL 365
Query: 399 HSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDA 458
H +V+R GF SN+F SAL+DMY+K G++K A + F M + VSW A+I A +G
Sbjct: 366 HGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHG 425
Query: 459 QATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYAS 518
+ FE+M + G +P+ V+ ++VL+ACSH GL++E YFNSMT+ Y L + EHYA+
Sbjct: 426 HEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAA 485
Query: 519 MVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLR 578
+ D+L R+G +EA +++M EP +WS++++SC +HKNLE A+K A+++F ++
Sbjct: 486 VADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDS-E 544
Query: 579 DAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQ 638
+ YV M N+YA G+W+ +++++ MR++G+RK A SW+E+K+K H F + D HP
Sbjct: 545 NMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPS 604
Query: 639 TNEIRRKIENLMQEMKKEGYKPDTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGS 698
++I ++ +M++M+KEGY DTS LHD DEE K E L HSERLA+AF +INT G+
Sbjct: 605 MDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGT 664
Query: 699 PILVMKNLRACTDCHAAIKLISKITGREITVRDSSRFHHFKDGFCSCRDFW 749
I V KN+R CTDCH AIK ISKIT REI VRD+SRFHHF G CSC D+W
Sbjct: 665 TIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 510 bits (1314), Expect = e-143, Method: Compositional matrix adjust.
Identities = 277/741 (37%), Positives = 440/741 (59%), Gaps = 4/741 (0%)
Query: 10 NMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGS 69
N L+ Y + G L AR++F+ M R VSW LI GYS + EA +++ +++ +
Sbjct: 145 NALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELK-NSWI 203
Query: 70 DPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARR 129
PD T +++L + +H +K G NS++++ N LV Y K R ARR
Sbjct: 204 VPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARR 263
Query: 130 VFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLAD 189
VF EM +DSVS+N +I G+ K + EE++++F+E FKP T ++ L A L D
Sbjct: 264 VFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLD-QFKPDLLTVSSVLRACGHLRD 322
Query: 190 IALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITC 249
++L + ++ +++K FV V N L+D+Y+K ++ AR +F M D VS+N +I+
Sbjct: 323 LSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISG 382
Query: 250 YAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISE 309
Y + E++KLF+ + + L+SV DL+ G+ +H+ I + +
Sbjct: 383 YIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICID 442
Query: 310 VKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCR 369
+ V+N+L+DMYAKCG ++ +IF+++ TV W +ISA V+ G+ L + +M +
Sbjct: 443 LSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRK 502
Query: 370 ANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKD 429
+ + D ATF L A LA+ LGK++H ++R G+ S + G+AL++MY+K G L++
Sbjct: 503 SEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLEN 562
Query: 430 AIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSH 489
+ + F+ M R++V+W +I A G+ + L++F DM +SG PDSV ++++ ACSH
Sbjct: 563 SSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSH 622
Query: 490 CGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWS 549
GL++EGL F M YK+ P EHYA +VD+L RS +AE+ + MP +PD +W+
Sbjct: 623 SGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWA 682
Query: 550 SVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609
SV+ +CR ++E A++ + ++ ++ D + SN YA +W+ VS ++K+++++
Sbjct: 683 SVLRACRTSGDMETAERVSRRIIELNP-DDPGYSILASNAYAALRKWDKVSLIRKSLKDK 741
Query: 610 GVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDT-SCALHD 668
+ K YSW+E+ VHVF++ D+ PQ+ I + +E L M KEGY PD + +
Sbjct: 742 HITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNL 801
Query: 669 EDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLISKITGREIT 728
E+EE K + HSERLAIAF L+NT G+P+ VMKNLR C DCH KLISKI GREI
Sbjct: 802 EEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREIL 861
Query: 729 VRDSSRFHHFKDGFCSCRDFW 749
VRD++RFH FKDG CSC+D W
Sbjct: 862 VRDANRFHLFKDGTCSCKDRW 882
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 509 bits (1311), Expect = e-143, Method: Compositional matrix adjust.
Identities = 270/738 (36%), Positives = 425/738 (57%), Gaps = 3/738 (0%)
Query: 12 LISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDP 71
L+S + + G++ A +F + + V + ++ G+++ + +A + FV MR D +P
Sbjct: 75 LVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDD-VEP 133
Query: 72 DYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVF 131
F LL C + ++H ++K G++ L L + Y K R ++ AR+VF
Sbjct: 134 VVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVF 193
Query: 132 KEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIA 191
MP++D VS+N ++ G+++ G+ A+++ M KPS T + L A L I+
Sbjct: 194 DRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLIS 253
Query: 192 LGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYA 251
+G+++H + +++ F V ++ AL+D+Y+K + AR+LF M E + VS+N MI Y
Sbjct: 254 VGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYV 313
Query: 252 WNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVK 311
NE KE++ +F+++ + L A+ DL+ GR IH ++ V
Sbjct: 314 QNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVS 373
Query: 312 VANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRAN 371
V NSL+ MY KC + A +F L + V W AMI + Q G +ALN F +M
Sbjct: 374 VVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRT 433
Query: 372 ISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAI 431
+ D T+ S++ A AEL+ K +H V+RS NVF +AL+DMYAK G++ A
Sbjct: 434 VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIAR 493
Query: 432 QTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCG 491
F M ER++ +WNA+I +G +A L+ FE+M + +P+ V+ LSV+SACSH G
Sbjct: 494 LIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSG 553
Query: 492 LIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSV 551
L+E GL+ F M + Y + +HY +MVD+L R+G +EA + QMP +P ++ ++
Sbjct: 554 LVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAM 613
Query: 552 INSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611
+ +C+IHKN+ FA+KAA++LF++ D +V ++NIY A WE V QV+ +M +G+
Sbjct: 614 LGACQIHKNVNFAEKAAERLFELNP-DDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672
Query: 612 RKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSCALHDEDE 671
RK S VE+K++VH F + HP + +I +E L+ +K+ GY PDT+ L E+
Sbjct: 673 RKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVEN- 731
Query: 672 EIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLISKITGREITVRD 731
++K + L HSE+LAI+F L+NT G+ I V KNLR C DCH A K IS +TGREI VRD
Sbjct: 732 DVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRD 791
Query: 732 SSRFHHFKDGFCSCRDFW 749
RFHHFK+G CSC D+W
Sbjct: 792 MQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 501 bits (1290), Expect = e-141, Method: Compositional matrix adjust.
Identities = 257/669 (38%), Positives = 377/669 (56%), Gaps = 32/669 (4%)
Query: 112 NSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLF-VEMQHLGF 170
N+L+ +Y K + F+++P +D V++N LI G++ GL A+K + M+
Sbjct: 76 NNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSA 135
Query: 171 KPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARK 230
+ T L ++LG+Q+H V+K F + V + LL +Y+ C+ +A+K
Sbjct: 136 NLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKK 195
Query: 231 LFGEMP------------------------------EVDGVSYNVMITCYAWNEQYKESL 260
+F + E D VS+ MI A N KE++
Sbjct: 196 VFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAI 255
Query: 261 KLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMY 320
+ FRE++ Q+PF ++L + G+QIH I T + V ++L+DMY
Sbjct: 256 ECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMY 315
Query: 321 AKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFA 380
KC AK +F + + V WTAM+ Y Q G EEA+ +F++M R+ I D T
Sbjct: 316 CKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLG 375
Query: 381 SILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPER 440
+ A A ++SL G Q H I SG + V ++L+ +Y K G + D+ + F EM R
Sbjct: 376 QAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR 435
Query: 441 NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYF 500
+ VSW A++SA AQ G A T++ F+ MVQ G +PD V+L V+SACS GL+E+G +YF
Sbjct: 436 DAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYF 495
Query: 501 NSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKN 560
MT +Y + P HY+ M+D+ RSG +EA + + MPF PD I W++++++CR N
Sbjct: 496 KLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGN 555
Query: 561 LEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWV 620
LE K AA+ L +++ A Y +S+IYA G+W+SV+Q+++ MRE+ V+K SW+
Sbjct: 556 LEIGKWAAESLIELDP-HHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWI 614
Query: 621 ELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSCALHDEDEEIKVESLKY 680
+ K K+H F+A+DE P ++I K+E L ++ GYKPDTS HD +E +KV+ L Y
Sbjct: 615 KWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNY 674
Query: 681 HSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLISKITGREITVRDSSRFHHFKD 740
HSERLAIAF LI P G PI V KNLR C DCH A K IS +TGREI VRD+ RFH FKD
Sbjct: 675 HSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKD 734
Query: 741 GFCSCRDFW 749
G CSC DFW
Sbjct: 735 GTCSCGDFW 743
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 749 | ||||||
| 359488555 | 825 | PREDICTED: putative pentatricopeptide re | 0.998 | 0.906 | 0.724 | 0.0 | |
| 356570253 | 815 | PREDICTED: putative pentatricopeptide re | 0.998 | 0.917 | 0.707 | 0.0 | |
| 357508407 | 1125 | Pentatricopeptide repeat-containing prot | 0.998 | 0.664 | 0.711 | 0.0 | |
| 449523810 | 816 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.998 | 0.916 | 0.691 | 0.0 | |
| 449460574 | 816 | PREDICTED: putative pentatricopeptide re | 0.998 | 0.916 | 0.691 | 0.0 | |
| 296082276 | 785 | unnamed protein product [Vitis vinifera] | 0.951 | 0.908 | 0.696 | 0.0 | |
| 224069617 | 815 | predicted protein [Populus trichocarpa] | 0.997 | 0.916 | 0.684 | 0.0 | |
| 113205417 | 819 | Pentatricopeptide repeat domain containi | 0.998 | 0.913 | 0.668 | 0.0 | |
| 15232837 | 825 | pentatricopeptide repeat-containing prot | 1.0 | 0.907 | 0.606 | 0.0 | |
| 297836116 | 944 | pentatricopeptide repeat-containing prot | 0.973 | 0.772 | 0.613 | 0.0 |
| >gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510-like, partial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1164 bits (3010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/749 (72%), Positives = 652/749 (87%), Gaps = 1/749 (0%)
Query: 1 MPNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLF 60
MP++NTVSTNM+ISGYVKSGNL AR+LF+ MV+RTAV+WTILIGGYSQ NQF+EAF+LF
Sbjct: 78 MPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELF 137
Query: 61 VDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCK 120
V M+ G++PDYVTF TLLSGC+ + N++ QV IIK GY+S LI+ N+LVDSYCK
Sbjct: 138 VQMQR-CGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCK 196
Query: 121 IRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAA 180
LDLA ++FKEMP+ DSVS+NA+ITG++K+GL+E+A+ LFVEMQ+ G KP++FTFAA
Sbjct: 197 SNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAV 256
Query: 181 LSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDG 240
L A +GL DI LG+Q+H+FV+KTNFV NVFV+NALLD YSKHD V++ARKLF EMPE DG
Sbjct: 257 LCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDG 316
Query: 241 VSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQ 300
VSYNV+I+ YAW+ ++K + LFRELQFT FDR QFPF+T+LS+ +N LD ++GRQIH Q
Sbjct: 317 VSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQ 376
Query: 301 TIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEA 360
TIVTTA SE+ V NSLVDMYAKCG+FEEA+ IF NL+H S VPWTAMISAYVQKG EE
Sbjct: 377 TIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEG 436
Query: 361 LNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDM 420
L LF +M +A++ ADQATFAS+LRASA +ASLSLGKQLHSF+I+SGFMSNVFSGSALLD+
Sbjct: 437 LQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDV 496
Query: 421 YAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSL 480
YAK GS+KDA+QTF+EMP+RNIVSWNA+ISA AQNG+A+ATLKSF++MV SG QPDSVS
Sbjct: 497 YAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSF 556
Query: 481 LSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMP 540
L VLSACSH GL+EEGL +FNSMTQ YKL P++EHYAS+VD+LCRSG F+EAEKLMA+MP
Sbjct: 557 LGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMP 616
Query: 541 FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVS 600
+PDEIMWSSV+N+CRIHKN E A++AADQLF ME+LRDAAPYV MSNIYA AGQWE+VS
Sbjct: 617 IDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVS 676
Query: 601 QVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKP 660
+V KAMR+RGV+K+ AYSWVE+K + H+F+AND HPQ EIR+KI+ L + M++ GYKP
Sbjct: 677 KVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKP 736
Query: 661 DTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLIS 720
DTSCALH+EDE+ KVESLKYHSERLAIAFALI+TPEGSPILVMKNLRAC DCHAAIK+IS
Sbjct: 737 DTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVIS 796
Query: 721 KITGREITVRDSSRFHHFKDGFCSCRDFW 749
KI GREITVRDS+RFHHF+DGFCSC DFW
Sbjct: 797 KIVGREITVRDSTRFHHFRDGFCSCGDFW 825
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1138 bits (2944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/749 (70%), Positives = 635/749 (84%), Gaps = 1/749 (0%)
Query: 1 MPNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLF 60
MP++N +STN +I GY+KSGNL+TAR LF+SMV R+ V+WT+LIGGY+Q N+F EAF LF
Sbjct: 68 MPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLF 127
Query: 61 VDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCK 120
DM G PD++T ATLLSG +E ++ NE+ QVH ++K GY+S L++CNSL+DSYCK
Sbjct: 128 ADM-CRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCK 186
Query: 121 IRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAA 180
R L LA +FK M +KD+V+FNAL+TG++KEG N +AI LF +MQ LGF+PS+FTFAA
Sbjct: 187 TRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAV 246
Query: 181 LSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDG 240
L+AG+ + DI G+QVH+FVVK NFV NVFVANALLD YSKHD +VEARKLF EMPEVDG
Sbjct: 247 LTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDG 306
Query: 241 VSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQ 300
+SYNV+ITC AWN + +ESL+LFRELQFTRFDR QFPF+TLLS+ AN L+L++GRQIH+Q
Sbjct: 307 ISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQ 366
Query: 301 TIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEA 360
IVT AISEV V NSLVDMYAKC +F EA IFA+L+H S+VPWTA+IS YVQKG E+
Sbjct: 367 AIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDG 426
Query: 361 LNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDM 420
L LF+EM RA I AD AT+ASILRA A LASL+LGKQLHS +IRSG +SNVFSGSAL+DM
Sbjct: 427 LKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDM 486
Query: 421 YAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSL 480
YAK GS+K+A+Q F+EMP RN VSWNALISA AQNGD L+SFE M+ SG QP+SVS
Sbjct: 487 YAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSF 546
Query: 481 LSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMP 540
LS+L ACSHCGL+EEGLQYFNSMTQ YKL P++EHYASMVD+LCRSG FDEAEKLMA+MP
Sbjct: 547 LSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMP 606
Query: 541 FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVS 600
FEPDEIMWSS++NSCRIHKN E A KAADQLF M+ LRDAAPYV+MSNIYA AG+W+SV
Sbjct: 607 FEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVG 666
Query: 601 QVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKP 660
+VKKA+RERG+RKV AYSWVE+K K HVF+AND HPQT EI RK++ L ++M+++GYKP
Sbjct: 667 KVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKP 726
Query: 661 DTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLIS 720
D++CALH+ DEE+KVESLKYHSER+AIAFALI+TP+GSPILVMKNLRAC DCHAAIK+IS
Sbjct: 727 DSTCALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVIS 786
Query: 721 KITGREITVRDSSRFHHFKDGFCSCRDFW 749
KI REITVRDSSRFHHF DG CSC+D+W
Sbjct: 787 KIVNREITVRDSSRFHHFTDGSCSCKDYW 815
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1134 bits (2933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/749 (71%), Positives = 636/749 (84%), Gaps = 1/749 (0%)
Query: 1 MPNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLF 60
MP++N STN +I GY+KSGNL+ AR LF+SM RTAV+WT+LIGGY+Q NQFREAF LF
Sbjct: 127 MPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLF 186
Query: 61 VDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCK 120
++M G DPD+V+ ATLLSG +E D+ NE+ QVH+ +IK GY+S L++ NSL+DSYCK
Sbjct: 187 IEMGRHG-IDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCK 245
Query: 121 IRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAA 180
R L LA ++F ++P++DSV+FNAL+TG++KEG N EAI LF +MQ +G++P++FTFAA
Sbjct: 246 TRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAI 305
Query: 181 LSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDG 240
L+AG+ L DI G+QVH FVVK NFV NVFVANALLD YSKHD VVEA KLF EMPEVDG
Sbjct: 306 LTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDG 365
Query: 241 VSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQ 300
+SYNV++TCYAWN + KESL+LF+ELQFT FDR FPF+TLLS+ A L+L IGRQIH+Q
Sbjct: 366 ISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQ 425
Query: 301 TIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEA 360
TIVT AISE+ V NSLVDMYAKCG F EA IF++L+ S+VPWTAMIS+YVQKG E+
Sbjct: 426 TIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDG 485
Query: 361 LNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDM 420
L LF+EM RA I AD AT+ASI+RA A LASL+LGKQLHS +I SG++SNVFSGSAL+DM
Sbjct: 486 LKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDM 545
Query: 421 YAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSL 480
YAK GS+KDA+Q F+EMP RN VSWNALISA AQNGD TL+ FE+MV+SG QPDSVSL
Sbjct: 546 YAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSL 605
Query: 481 LSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMP 540
LS+L ACSHCGL+EEGLQYF+SMT+ YKL PKKEHYAS +D+LCR G FDEAEKLMAQMP
Sbjct: 606 LSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMP 665
Query: 541 FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVS 600
FEPDEIMWSSV+NSC IHKN E AKKAA+QLF M+ LRDAAPYV MSNIYA AG+W++V
Sbjct: 666 FEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVG 725
Query: 601 QVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKP 660
+VKKAMRERGV+KV AYSWVE+K K HVFTAND+ HPQ EI +K++ L ++M K+GYKP
Sbjct: 726 KVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGYKP 785
Query: 661 DTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLIS 720
D+SCALH+ DEE+KVESLKYHSER+AIAFALI+TPEGSPILVMKNLRACTDCHAAIK+IS
Sbjct: 786 DSSCALHNVDEEVKVESLKYHSERIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVIS 845
Query: 721 KITGREITVRDSSRFHHFKDGFCSCRDFW 749
KI REITVRDSSRFHHF+DGFC+CRD+W
Sbjct: 846 KIVRREITVRDSSRFHHFRDGFCTCRDYW 874
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At2g01510-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1104 bits (2856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/749 (69%), Positives = 618/749 (82%), Gaps = 1/749 (0%)
Query: 1 MPNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLF 60
MP +NT+S NM+ISG++K G L+ ARELF+ MV+RTAVSWTILIGGY Q NQ +EAF+L+
Sbjct: 69 MPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLY 128
Query: 61 VDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCK 120
DMR GG +PDYVT TLLSG E +T N ++Q+H +IK GY L++CNSLVD+YCK
Sbjct: 129 ADMRR-GGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCK 187
Query: 121 IRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAA 180
CL LA ++FK M KD+V+FN+L+TG++ EGLNEEAI+LF+E+ + G KPSDFTFAA
Sbjct: 188 THCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAAL 247
Query: 181 LSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDG 240
LSA VGL D G+QVH FV+KTNFV NVFV NALLD YSKHD V E KLF EMPE+DG
Sbjct: 248 LSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDG 307
Query: 241 VSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQ 300
+SYNV+IT YAWN Q+KES LFR+LQFTRFDR QFPF+TLLS+ + L+L++GRQIH Q
Sbjct: 308 ISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQ 367
Query: 301 TIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEA 360
I A E +V N+LVDMYAKC +EA++IF N++ STVPWTAMISAYVQKG EE
Sbjct: 368 AITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEG 427
Query: 361 LNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDM 420
+N+F +M R + ADQATFASILRA A LAS+SLG+QLHS +IRSGFMSNV+SGSALLD
Sbjct: 428 INVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDT 487
Query: 421 YAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSL 480
YAK G + DAI++F EMPERN VSWNALISA AQNG+ TL SF+ M+QSGY+PDSVS
Sbjct: 488 YAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSF 547
Query: 481 LSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMP 540
LSVLSACSHCG +EE L +FNSMTQ Y++ PK+EHY SMVD+LCR+G FDEAEKLM +MP
Sbjct: 548 LSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMP 607
Query: 541 FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVS 600
FEP EIMWSSV+NSCRIHKN E AKKAAD+LF ME LRDAAPY+ MSNIYAVAGQW++V+
Sbjct: 608 FEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVA 667
Query: 601 QVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKP 660
+VKKAMR+RGVRKV AYSWVE+K + HVF+AND+ HP+ +I RKI L +EM+K+GYKP
Sbjct: 668 KVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKP 727
Query: 661 DTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLIS 720
DT+CALHD DE IK+ESLKYHSER AIAFAL+NTP+GSPI+VMKNLRACTDCHAAIK+IS
Sbjct: 728 DTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVIS 787
Query: 721 KITGREITVRDSSRFHHFKDGFCSCRDFW 749
+I REI VRDSSRFHHFKDG CSC D+W
Sbjct: 788 QIVEREIIVRDSSRFHHFKDGVCSCGDYW 816
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/749 (69%), Positives = 618/749 (82%), Gaps = 1/749 (0%)
Query: 1 MPNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLF 60
MP +NT+S NM+ISG++K G L+ ARELF+ MV+RTAVSWTILIGGY Q NQ +EAF+L+
Sbjct: 69 MPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLY 128
Query: 61 VDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCK 120
DMR GG +PDYVT TLLSG E +T N ++Q+H +IK GY L++CNSLVD+YCK
Sbjct: 129 ADMRR-GGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCK 187
Query: 121 IRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAA 180
CL LA ++FK M KD+V+FN+L+TG++ EGLNEEAI+LF+E+ + G KPSDFTFAA
Sbjct: 188 THCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAAL 247
Query: 181 LSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDG 240
LSA VGL D G+QVH FV+KTNFV NVFV NALLD YSKHD V E KLF EMPE+DG
Sbjct: 248 LSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDG 307
Query: 241 VSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQ 300
+SYNV+IT YAWN Q+KES LFR+LQFTRFDR QFPF+TLLS+ + L+L++GRQIH Q
Sbjct: 308 ISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQ 367
Query: 301 TIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEA 360
I A E +V N+LVDMYAKC +EA++IF N++ STVPWTAMISAYVQKG EE
Sbjct: 368 AITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEG 427
Query: 361 LNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDM 420
+N+F +M R + ADQATFASILRA A LAS+SLG+QLHS +IRSGFMSNV+SGSALLD
Sbjct: 428 INVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDT 487
Query: 421 YAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSL 480
YAK G + DAI++F EMPERN VSWNALISA AQNG+ TL SF+ M+QSGY+PDSVS
Sbjct: 488 YAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSF 547
Query: 481 LSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMP 540
LSVLSACSHCG +EE L +FNSMTQ Y++ PK+EHY SMVD+LCR+G FDEAEKLM +MP
Sbjct: 548 LSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMP 607
Query: 541 FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVS 600
FEP EIMWSSV+NSCRIHKN E AKKAAD+LF ME LRDAAPY+ MSNIYAVAGQW++V+
Sbjct: 608 FEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVA 667
Query: 601 QVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKP 660
+VKKAMR+RGVRKV AYSWVE+K + HVF+AND+ HP+ +I RKI L +EM+K+GYKP
Sbjct: 668 KVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKP 727
Query: 661 DTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLIS 720
DT+CALHD DE IK+ESLKYHSER AIAFAL+NTP+GSPI+VMKNLRACTDCHAAIK+IS
Sbjct: 728 DTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVIS 787
Query: 721 KITGREITVRDSSRFHHFKDGFCSCRDFW 749
+I REI VRDSSRFHHFKDG CSC D+W
Sbjct: 788 QIVEREIIVRDSSRFHHFKDGVCSCGDYW 816
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1097 bits (2837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/749 (69%), Positives = 620/749 (82%), Gaps = 36/749 (4%)
Query: 1 MPNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLF 60
MP++NTVSTNM+ISGYVKSGNL AR+LF+ MV+RTAV+WTILIGGYSQ NQF+EAF+LF
Sbjct: 73 MPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELF 132
Query: 61 VDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCK 120
V M+ G++PDYVTF TLLSGC+ + N++ QV IIK GY+S LI+ N+LVDSYCK
Sbjct: 133 VQMQR-CGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCK 191
Query: 121 IRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAA 180
LDLA ++FKEMP+ DS FTFAA
Sbjct: 192 SNRLDLACQLFKEMPEIDS-----------------------------------FTFAAV 216
Query: 181 LSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDG 240
L A +GL DI LG+Q+H+FV+KTNFV NVFV+NALLD YSKHD V++ARKLF EMPE DG
Sbjct: 217 LCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDG 276
Query: 241 VSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQ 300
VSYNV+I+ YAW+ ++K + LFRELQFT FDR QFPF+T+LS+ +N LD ++GRQIH Q
Sbjct: 277 VSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQ 336
Query: 301 TIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEA 360
TIVTTA SE+ V NSLVDMYAKCG+FEEA+ IF NL+H S VPWTAMISAYVQKG EE
Sbjct: 337 TIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEG 396
Query: 361 LNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDM 420
L LF +M +A++ ADQATFAS+LRASA +ASLSLGKQLHSF+I+SGFMSNVFSGSALLD+
Sbjct: 397 LQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDV 456
Query: 421 YAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSL 480
YAK GS+KDA+QTF+EMP+RNIVSWNA+ISA AQNG+A+ATLKSF++MV SG QPDSVS
Sbjct: 457 YAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSF 516
Query: 481 LSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMP 540
L VLSACSH GL+EEGL +FNSMTQ YKL P++EHYAS+VD+LCRSG F+EAEKLMA+MP
Sbjct: 517 LGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMP 576
Query: 541 FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVS 600
+PDEIMWSSV+N+CRIHKN E A++AADQLF ME+LRDAAPYV MSNIYA AGQWE+VS
Sbjct: 577 IDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVS 636
Query: 601 QVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKP 660
+V KAMR+RGV+K+ AYSWVE+K + H+F+AND HPQ EIR+KI+ L + M++ GYKP
Sbjct: 637 KVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKP 696
Query: 661 DTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLIS 720
DTSCALH+EDE+ KVESLKYHSERLAIAFALI+TPEGSPILVMKNLRAC DCHAAIK+IS
Sbjct: 697 DTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVIS 756
Query: 721 KITGREITVRDSSRFHHFKDGFCSCRDFW 749
KI GREITVRDS+RFHHF+DGFCSC DFW
Sbjct: 757 KIVGREITVRDSTRFHHFRDGFCSCGDFW 785
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa] gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1083 bits (2801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/749 (68%), Positives = 610/749 (81%), Gaps = 2/749 (0%)
Query: 1 MPNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLF 60
MPN+N+ S +++ISGYVKSGNL AR +F+ +RT V+WT +IG YS+ N+F +AFKLF
Sbjct: 69 MPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLF 128
Query: 61 VDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCK 120
+M GS PDYVT+ TLL+GC++ + A EL Q HA I+K G++ +CN+L+DSY K
Sbjct: 129 AEMHR-SGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFK 187
Query: 121 IRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAA 180
LD ARR+F EM DSVSFN +ITG+A GLNEEAI+LFVEMQ+LGFKPSDFTFAA
Sbjct: 188 TGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAV 247
Query: 181 LSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDG 240
+SA VGL D A G+Q+H FVVKT+F+ NVFV NA LD YSKHDCV E RKLF EMPE+DG
Sbjct: 248 ISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDG 307
Query: 241 VSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQ 300
VSYNV+IT YAW + KES+ LF+ELQFT FDR FPF T+LS+ A+ LDLQ+GRQ+H Q
Sbjct: 308 VSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQ 367
Query: 301 TIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEA 360
+V+ A + +V+NSLVDMYAKCG+FEEA IF LS STVPWTAMISA VQ+G E
Sbjct: 368 VVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENG 427
Query: 361 LNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDM 420
L LF EM RAN+SADQATFA +L+ASA LAS+ LGKQLHS VIRSGFM NV+SG ALLDM
Sbjct: 428 LKLFYEMRRANVSADQATFACVLKASANLASILLGKQLHSCVIRSGFM-NVYSGCALLDM 486
Query: 421 YAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSL 480
YA S+KDAI+TF+EM ERN+V+WNAL+SA AQNGD + TLKSFE+M+ SGYQPDSVS
Sbjct: 487 YANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSF 546
Query: 481 LSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMP 540
L +L+ACSHC L+EEGL+YFN M+ Y L PK+EHY +MVD LCRSG FDEAEKLM QMP
Sbjct: 547 LCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMP 606
Query: 541 FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVS 600
FEPDEI+W+SV+NSCRIHKN A+KAA QLF M+ LRDAAPYV MSNI+A AGQW+SV
Sbjct: 607 FEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVV 666
Query: 601 QVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKP 660
+VKKAMR+RGVRK+ AYSWVE+K KVHVF+AND+ HPQ EI RKIE L ++M+KEGY P
Sbjct: 667 KVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDDKHPQQLEILRKIEMLAEQMEKEGYDP 726
Query: 661 DTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLIS 720
D SCA + D+E K++SLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIK+IS
Sbjct: 727 DISCAHQNVDKESKIDSLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKVIS 786
Query: 721 KITGREITVRDSSRFHHFKDGFCSCRDFW 749
KI GREITVRDS+RFHHF+DG CSC D+W
Sbjct: 787 KIVGREITVRDSNRFHHFRDGSCSCGDYW 815
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative [Solanum demissum] | Back alignment and taxonomy information |
|---|
Score = 1078 bits (2787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/749 (66%), Positives = 614/749 (81%), Gaps = 1/749 (0%)
Query: 1 MPNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLF 60
MP +NT S NM++SGYVKS NL ARELF SM R VSWTI+IGGYSQ NQ +EAF L+
Sbjct: 72 MPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLY 131
Query: 61 VDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCK 120
+M G PD++TFATLLSG + T E++Q+H+ II+FG+++ LI+ NSLVDSYCK
Sbjct: 132 TEM-CRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCK 190
Query: 121 IRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAA 180
CLD+A ++F EMP KDSVSFN +ITG+ K G EEA+KLF++M+++ F+PS FTFAA
Sbjct: 191 TCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAM 250
Query: 181 LSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDG 240
L VG D+ G+Q+H +KT++V ++FVANALLD YSKHD + A+ LF EMPE+DG
Sbjct: 251 LGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDG 310
Query: 241 VSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQ 300
VSYN++IT YAWN QY++S LF+ LQ T FDR FPF+T+LSV A +L+L +GRQ H Q
Sbjct: 311 VSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQ 370
Query: 301 TIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEA 360
+VTTA+SEV+V N+LVDMYAKC +FE+A IFANL++ ++VPWTA+IS YVQKG EEA
Sbjct: 371 AVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEA 430
Query: 361 LNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDM 420
L +F EM R N+ DQATFAS L+ASA LAS+SLGKQLHS VIR G +S+VFSGS L+DM
Sbjct: 431 LKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDM 490
Query: 421 YAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSL 480
YA GS+KDAI+ FKEMP+RNIV WNALISA +QNGDA+AT SF DM++SG PDSVS
Sbjct: 491 YANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSF 550
Query: 481 LSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMP 540
LSVL+ACSH GL+E+ L YFNSMTQ YKL P+++HYA+M+D+LCRSG F+EAE L+++MP
Sbjct: 551 LSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMP 610
Query: 541 FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVS 600
FEPDE+MWSSV+NSCRIHKN + AKKAADQLFKM+ LRDAA YV MSNIYA AG+WE+ +
Sbjct: 611 FEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAA 670
Query: 601 QVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKP 660
+VKKAMRERGV+KVTAYSWVE+ +VHVFTAND HPQT +IRRKI +L++ M KEGYKP
Sbjct: 671 KVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGYKP 730
Query: 661 DTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLIS 720
DTSC L + DEE+K+ESLKYHSERLAIAFALINTPEGSPI++MKNLRAC DCHAAIK+IS
Sbjct: 731 DTSCTLQNVDEEMKIESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHAAIKVIS 790
Query: 721 KITGREITVRDSSRFHHFKDGFCSCRDFW 749
KI GREITVRDSSRFHHF+DG CSC D+W
Sbjct: 791 KIVGREITVRDSSRFHHFRDGSCSCGDYW 819
|
Source: Solanum demissum Species: Solanum demissum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At2g01510 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana] gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana] gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 970 bits (2507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/752 (60%), Positives = 584/752 (77%), Gaps = 3/752 (0%)
Query: 1 MPNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLF 60
MP++NTVSTN +ISG+VK+G++++AR+LF++M DRT V+WTIL+G Y++ + F EAFKLF
Sbjct: 74 MPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLF 133
Query: 61 VDM-RTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGY--NSILIICNSLVDS 117
M R+ + PD+VTF TLL GC++ N + QVHA +K G+ N L + N L+ S
Sbjct: 134 RQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKS 193
Query: 118 YCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTF 177
YC++R LDLA +F+E+P+KDSV+FN LITG+ K+GL E+I LF++M+ G +PSDFTF
Sbjct: 194 YCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTF 253
Query: 178 AAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE 237
+ L A VGL D ALG+Q+HA V T F + V N +LD YSKHD V+E R LF EMPE
Sbjct: 254 SGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPE 313
Query: 238 VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQI 297
+D VSYNV+I+ Y+ +QY+ SL FRE+Q FDR FPF+T+LS+ AN LQ+GRQ+
Sbjct: 314 LDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQL 373
Query: 298 HTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNL 357
H Q ++ TA S + V NSLVDMYAKC FEEA+ IF +L +TV WTA+IS YVQKG
Sbjct: 374 HCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLH 433
Query: 358 EEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSAL 417
L LF +M +N+ ADQ+TFA++L+ASA ASL LGKQLH+F+IRSG + NVFSGS L
Sbjct: 434 GAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGL 493
Query: 418 LDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDS 477
+DMYAK GS+KDA+Q F+EMP+RN VSWNALISA A NGD +A + +F M++SG QPDS
Sbjct: 494 VDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDS 553
Query: 478 VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMA 537
VS+L VL+ACSHCG +E+G +YF +M+ Y + PKK+HYA M+D+L R+G F EAEKLM
Sbjct: 554 VSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMD 613
Query: 538 QMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWE 597
+MPFEPDEIMWSSV+N+CRIHKN A++AA++LF MEKLRDAA YV+MSNIYA AG+WE
Sbjct: 614 EMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWE 673
Query: 598 SVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEG 657
V VKKAMRERG++KV AYSWVE+ K+HVF++ND+ HP +EI RKI L E+++EG
Sbjct: 674 KVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREG 733
Query: 658 YKPDTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIK 717
YKPDTS + D DE++K+ESLKYHSERLA+AFALI+TPEG PI+VMKNLRAC DCHAAIK
Sbjct: 734 YKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIK 793
Query: 718 LISKITGREITVRDSSRFHHFKDGFCSCRDFW 749
LISKI REITVRD+SRFHHF +G CSC D+W
Sbjct: 794 LISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/732 (61%), Positives = 561/732 (76%), Gaps = 3/732 (0%)
Query: 1 MPNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLF 60
MP++NTVSTN +ISGYVK G+L++AR LF++M DRT V+WTIL+G Y+ N F EAFKLF
Sbjct: 70 MPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLF 129
Query: 61 VDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGY--NSILIICNSLVDSY 118
M + PDYVTF TLL GC++ N + QVHA +K G+ N L +CN L+ SY
Sbjct: 130 RQM-CRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSY 188
Query: 119 CKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFA 178
C++R LDLA +F+E+ KDSV+FN LITG+ K+GL EAI LF++M+ G KPSDFTF+
Sbjct: 189 CEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFS 248
Query: 179 AALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEV 238
L A VGL D ALG+Q+H V T F + V N +L YSKHD V+E R LF EMPE+
Sbjct: 249 GVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPEL 308
Query: 239 DGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIH 298
D VSYNV+I+ Y+ EQY+ESL LFRE+Q FDR FPF+T+LS+ AN LQ+GRQ+H
Sbjct: 309 DFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVH 368
Query: 299 TQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLE 358
Q IV TA S + V NSLVDMYAKC F+EA+ IF +LS STV WTA+IS YVQKG
Sbjct: 369 CQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHG 428
Query: 359 EALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALL 418
L LF +M AN+ ADQ+TFA++L+ASA ASL LGKQLH+F+IRSG + NVFSGS L+
Sbjct: 429 AGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLV 488
Query: 419 DMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV 478
DMYAK GS+KDA+Q F+EMP+RN VSWNALISA A NGD +A + +F M+QSG QPDSV
Sbjct: 489 DMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSV 548
Query: 479 SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQ 538
S+L VL ACSHCG +E+G ++F +M+ Y + PKK+HYA M+D+L R+G F EAEKLM +
Sbjct: 549 SILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDE 608
Query: 539 MPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWES 598
MPFEPDEIMWSSV+N+CRI+KN A++AA+QLF MEKLRDAA YV+MSNIYA AG+WE+
Sbjct: 609 MPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWEN 668
Query: 599 VSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGY 658
V VKKAMRERG++KV AYSWVE+ K+HVF++ND+ HP +EI +KI L E+++EGY
Sbjct: 669 VRHVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVKKINELTTEIEREGY 728
Query: 659 KPDTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKL 718
KPDTS + D DE++K+ESLKYHSERLA+AFALI+TPEG PI+VMKNLRAC DCHAAIKL
Sbjct: 729 KPDTSSVVQDIDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKL 788
Query: 719 ISKITGREITVR 730
ISKI R IT +
Sbjct: 789 ISKIVKRVITTQ 800
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 749 | ||||||
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 1.0 | 0.907 | 0.586 | 3.6e-240 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.983 | 0.835 | 0.364 | 1.7e-137 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.983 | 0.849 | 0.373 | 2.2e-137 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.981 | 0.738 | 0.38 | 3.5e-137 | |
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.983 | 0.786 | 0.354 | 1.8e-133 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.989 | 0.748 | 0.350 | 2e-132 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.720 | 0.726 | 0.409 | 4.2e-132 | |
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.978 | 0.846 | 0.346 | 3.3e-130 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.994 | 0.700 | 0.350 | 3.5e-130 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.986 | 0.869 | 0.344 | 7.8e-126 |
| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2315 (820.0 bits), Expect = 3.6e-240, P = 3.6e-240
Identities = 441/752 (58%), Positives = 564/752 (75%)
Query: 1 MPNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLF 60
MP++NTVSTN +ISG+VK+G++++AR+LF++M DRT V+WTIL+G Y++ + F EAFKLF
Sbjct: 74 MPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLF 133
Query: 61 VDM-RTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGY--NSILIICNSLVDS 117
M R+ + PD+VTF TLL GC++ N + QVHA +K G+ N L + N L+ S
Sbjct: 134 RQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKS 193
Query: 118 YCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTF 177
YC++R LDLA +F+E+P+KDSV+FN LITG+ K+GL E+I LF++M+ G +PSDFTF
Sbjct: 194 YCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTF 253
Query: 178 AAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE 237
+ L A VGL D ALG+Q+HA V T F + V N +LD YSKHD V+E R LF EMPE
Sbjct: 254 SGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPE 313
Query: 238 VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQI 297
+D VSYNV+I+ Y+ +QY+ SL FRE+Q FDR FPF+T+LS+ AN LQ+GRQ+
Sbjct: 314 LDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQL 373
Query: 298 HTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNL 357
H Q ++ TA S + V NSLVDMYAKC FEEA+ IF +L +TV WTA+IS YVQKG
Sbjct: 374 HCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLH 433
Query: 358 EEALNLFIEMCRANISADQATFXXXXXXXXXXXXXXXGKQLHSFVIRSGFMSNVFSGSAL 417
L LF +M +N+ ADQ+TF GKQLH+F+IRSG + NVFSGS L
Sbjct: 434 GAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGL 493
Query: 418 LDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDX 477
+DMYAK GS+KDA+Q F+EMP+RN VSWNALISA A NGD +A + +F M++SG QPD
Sbjct: 494 VDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDS 553
Query: 478 XXXXXXXXACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMA 537
ACSHCG +E+G +YF +M+ Y + PKK+HYA M+D+L R+G F EAEKLM
Sbjct: 554 VSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMD 613
Query: 538 QMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWE 597
+MPFEPDEIMWSSV+N+CRIHKN A++AA++LF MEKLRDAA YV+MSNIYA AG+WE
Sbjct: 614 EMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWE 673
Query: 598 SVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEG 657
V VKKAMRERG++KV AYSWVE+ K+HVF++ND+ HP +EI RKI L E+++EG
Sbjct: 674 KVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREG 733
Query: 658 YKPDTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIK 717
YKPDTS + D DE++K+ESLKYHSERLA+AFALI+TPEG PI+VMKNLRAC DCHAAIK
Sbjct: 734 YKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIK 793
Query: 718 LISKITGREITVRDSSRFHHFKDGFCSCRDFW 749
LISKI REITVRD+SRFHHF +G CSC D+W
Sbjct: 794 LISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1307 (465.1 bits), Expect = 1.7e-137, Sum P(2) = 1.7e-137
Identities = 270/741 (36%), Positives = 428/741 (57%)
Query: 10 NMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGS 69
N L+ Y + G L AR++F+ M R VSW LI GYS + EA +++ +++ +
Sbjct: 145 NALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELK-NSWI 203
Query: 70 DPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARR 129
PD T +++L + +H +K G NS++++ N LV Y K R ARR
Sbjct: 204 VPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARR 263
Query: 130 VFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLAD 189
VF EM +DSVS+N +I G+ K + EE++++F+E FKP T ++ L A L D
Sbjct: 264 VFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRD 322
Query: 190 IALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITC 249
++L + ++ +++K FV V N L+D+Y+K ++ AR +F M D VS+N +I+
Sbjct: 323 LSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISG 382
Query: 250 YAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISE 309
Y + E++KLF+ + + L+SV DL+ G+ +H+ I + +
Sbjct: 383 YIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICID 442
Query: 310 VKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCR 369
+ V+N+L+DMYAKCG ++ +IF+++ TV W +ISA V+ G+ L + +M +
Sbjct: 443 LSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRK 502
Query: 370 ANISADQATFXXXXXXXXXXXXXXXGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKD 429
+ + D ATF GK++H ++R G+ S + G+AL++MY+K G L++
Sbjct: 503 SEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLEN 562
Query: 430 AIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDXXXXXXXXXACSH 489
+ + F+ M R++V+W +I A G+ + L++F DM +SG PD ACSH
Sbjct: 563 SSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSH 622
Query: 490 CGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWS 549
GL++EGL F M YK+ P EHYA +VD+L RS +AE+ + MP +PD +W+
Sbjct: 623 SGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWA 682
Query: 550 SVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609
SV+ +CR ++E A++ + ++ ++ D + SN YA +W+ VS ++K+++++
Sbjct: 683 SVLRACRTSGDMETAERVSRRIIELNP-DDPGYSILASNAYAALRKWDKVSLIRKSLKDK 741
Query: 610 GVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDT-SCALHD 668
+ K YSW+E+ VHVF++ D+ PQ+ I + +E L M KEGY PD + +
Sbjct: 742 HITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNL 801
Query: 669 EDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLISKITGREIT 728
E+EE K + HSERLAIAF L+NT G+P+ VMKNLR C DCH KLISKI GREI
Sbjct: 802 EEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREIL 861
Query: 729 VRDSSRFHHFKDGFCSCRDFW 749
VRD++RFH FKDG CSC+D W
Sbjct: 862 VRDANRFHLFKDGTCSCKDRW 882
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1345 (478.5 bits), Expect = 2.2e-137, P = 2.2e-137
Identities = 279/747 (37%), Positives = 435/747 (58%)
Query: 6 TVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRT 65
+V T+ L+ Y+K N R++F+ M +R V+WT LI GY++ + E LF+ M+
Sbjct: 129 SVGTS-LVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQN 187
Query: 66 DGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLD 125
+G + P+ TFA L +E +QVH ++K G + + + NSL++ Y K +
Sbjct: 188 EG-TQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVR 246
Query: 126 LARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGV 185
AR +F + K V++N++I+G+A GL+ EA+ +F M+ + S+ +FA+ +
Sbjct: 247 KARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCA 306
Query: 186 GLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGV-SYN 244
L ++ Q+H VVK F+ + + AL+ YSK +++A +LF E+ V V S+
Sbjct: 307 NLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWT 366
Query: 245 VMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVT 304
MI+ + N+ +E++ LF E++ ++F +S +L+ L + ++H Q + T
Sbjct: 367 AMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA----LPVISPSEVHAQVVKT 422
Query: 305 TAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLF 364
V +L+D Y K G+ EEA ++F+ + V W+AM++ Y Q G E A+ +F
Sbjct: 423 NYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMF 482
Query: 365 IEMCRANISADQATFXXXXXX-XXXXXXXXXGKQLHSFVIRSGFMSNVFSGSALLDMYAK 423
E+ + I ++ TF GKQ H F I+S S++ SALL MYAK
Sbjct: 483 GELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAK 542
Query: 424 SGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDXXXXXXX 483
G+++ A + FK E+++VSWN++IS AQ+G A L F++M + + D
Sbjct: 543 KGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGV 602
Query: 484 XXACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEP 543
AC+H GL+EEG +YF+ M + K+ P KEH + MVD+ R+G ++A K++ MP
Sbjct: 603 FAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPA 662
Query: 544 DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVK 603
+W +++ +CR+HK E + AA+++ M K D+A YV +SN+YA +G W+ ++V+
Sbjct: 663 GSTIWRTILAACRVHKKTELGRLAAEKIIAM-KPEDSAAYVLLSNMYAESGDWQERAKVR 721
Query: 604 KAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTS 663
K M ER V+K YSW+E+K+K + F A D HP ++I K+E+L +K GY+PDTS
Sbjct: 722 KLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTS 781
Query: 664 CALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLISKIT 723
L D D+E K L HSERLAIAF LI TP+GSP+L++KNLR C DCH IKLI+KI
Sbjct: 782 YVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIE 841
Query: 724 GREITVRDSSRFHHFK-DGFCSCRDFW 749
REI VRDS+RFHHF DG CSC DFW
Sbjct: 842 EREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1304 (464.1 bits), Expect = 3.5e-137, Sum P(2) = 3.5e-137
Identities = 285/750 (38%), Positives = 428/750 (57%)
Query: 12 LISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDP 71
L+S + KSG+L+ AR++FN M R AV+ L+ G ++ EA KLF+DM + P
Sbjct: 249 LVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSP 308
Query: 72 DYVTFATLLSGCSEPDTANEL-----IQVHADIIKFGYNSILI-ICNSLVDSYCKIRCLD 125
+ ++ LLS E A E+ +VH +I G ++ I N LV+ Y K +
Sbjct: 309 E--SYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIA 366
Query: 126 LARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGV 185
ARRVF M KDSVS+N++ITG + G EA++ + M+ P FT ++LS+
Sbjct: 367 DARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCA 426
Query: 186 GLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNV 245
L LG+Q+H +K NV V+NAL+ LY++ + E RK+F MPE D VS+N
Sbjct: 427 SLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNS 486
Query: 246 MITCYAWNEQ-YKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVT 304
+I A +E+ E++ F Q ++ FS++LS V++ ++G+QIH +
Sbjct: 487 IIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKN 546
Query: 305 TAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHI-STVPWTAMISAYVQKGNLEEALNL 363
E N+L+ Y KCG + ++IF+ ++ V W +MIS Y+ L +AL+L
Sbjct: 547 NIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDL 606
Query: 364 FIEMCRANISADQATFXXXXXXXXXXXXXXXGKQLHSFVIRSGFMSNVFSGSALLDMYAK 423
M + D + G ++H+ +R+ S+V GSAL+DMY+K
Sbjct: 607 VWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSK 666
Query: 424 SGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP-DXXXXXX 482
G L A++ F MP RN SWN++IS A++G + LK FE M G P D
Sbjct: 667 CGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVG 726
Query: 483 XXXACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFE 542
ACSH GL+EEG ++F SM+ Y L P+ EH++ M D+L R+G D+ E + +MP +
Sbjct: 727 VLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMK 786
Query: 543 PDEIMWSSVINSC-RIH-KNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVS 600
P+ ++W +V+ +C R + + E KKAA+ LF++E +A YV + N+YA G+WE +
Sbjct: 787 PNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEP-ENAVNYVLLGNMYAAGGRWEDLV 845
Query: 601 QVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKP 660
+ +K M++ V+K YSWV +K VH+F A D+ HP + I +K++ L ++M+ GY P
Sbjct: 846 KARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVP 905
Query: 661 DTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGS-PILVMKNLRACTDCHAAIKLI 719
T AL+D ++E K E L YHSE+LA+AF L + PI +MKNLR C DCH+A K I
Sbjct: 906 QTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYI 965
Query: 720 SKITGREITVRDSSRFHHFKDGFCSCRDFW 749
SKI GR+I +RDS+RFHHF+DG CSC DFW
Sbjct: 966 SKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
|
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1267 (451.1 bits), Expect = 1.8e-133, Sum P(2) = 1.8e-133
Identities = 263/742 (35%), Positives = 418/742 (56%)
Query: 10 NMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGS 69
N LIS GN+ A +F+ M +R +SW + Y+Q E+F++F MR
Sbjct: 199 NSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFH-D 257
Query: 70 DPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKI-RCLDLAR 128
+ + T +TLLS D +H ++K G++S++ +CN+L+ Y R ++ A
Sbjct: 258 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVE-AN 316
Query: 129 RVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLA 188
VFK+MP KD +S+N+L+ F +G + +A+ L M G + TF +AL+A
Sbjct: 317 LVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPD 376
Query: 189 DIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMIT 248
GR +H VV + N + NAL+ +Y K + E+R++ +MP D V++N +I
Sbjct: 377 FFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIG 436
Query: 249 CYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDL-QIGRQIHTQTIVTTAI 307
YA +E ++L F+ ++ + ++LS DL + G+ +H +
Sbjct: 437 GYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFE 496
Query: 308 SEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEM 367
S+ V NSL+ MYAKCG ++++F L + + + W AM++A G+ EE L L +M
Sbjct: 497 SDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKM 556
Query: 368 CRANISADQATFXXXXXXXXXXXXXXXGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSL 427
+S DQ +F G+QLH ++ GF + F +A DMY+K G +
Sbjct: 557 RSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEI 616
Query: 428 KDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDXXXXXXXXXAC 487
+ ++ R++ SWN LISA ++G + +F +M++ G +P AC
Sbjct: 617 GEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTAC 676
Query: 488 SHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIM 547
SH GL+++GL Y++ + + + L P EH ++D+L RSG EAE +++MP +P++++
Sbjct: 677 SHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLV 736
Query: 548 WSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607
W S++ SC+IH NL+ +KAA+ L K+E D + YV SN++A G+WE V V+K M
Sbjct: 737 WRSLLASCKIHGNLDRGRKAAENLSKLEP-EDDSVYVLSSNMFATTGRWEDVENVRKQMG 795
Query: 608 ERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSCALH 667
+ ++K A SWV+LK KV F D HPQT EI K+E++ + +K+ GY DTS AL
Sbjct: 796 FKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQ 855
Query: 668 DEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLISKITGREI 727
D DEE K +L HSERLA+A+AL++TPEGS + + KNLR C+DCH+ K +S++ GR I
Sbjct: 856 DTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRI 915
Query: 728 TVRDSSRFHHFKDGFCSCRDFW 749
+RD RFHHF+ G CSC+D+W
Sbjct: 916 VLRDQYRFHHFERGLCSCKDYW 937
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1277 (454.6 bits), Expect = 2.0e-132, Sum P(2) = 2.0e-132
Identities = 264/754 (35%), Positives = 425/754 (56%)
Query: 2 PNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTIL----IGGYSQKNQFREAF 57
PN+ T+ ISG + + N D ++VS I + Y Q+
Sbjct: 244 PNEITLRLLARISG--DDSDAGQVKSFANGN-DASSVSEIIFRNKGLSEYLHSGQYSALL 300
Query: 58 KLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDS 117
K F DM + + D VTF +L+ + D+ QVH +K G + +L + NSL++
Sbjct: 301 KCFADM-VESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINM 359
Query: 118 YCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTF 177
YCK+R AR VF M ++D +S+N++I G A+ GL EA+ LF+++ G KP +T
Sbjct: 360 YCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTM 419
Query: 178 AAALSAGVGLAD-IALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMP 236
+ L A L + ++L +QVH +K N V + FV+ AL+D YS++ C+ EA LF E
Sbjct: 420 TSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF-ERH 478
Query: 237 EVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQ-FPFSTLLSVVANKLDLQIGR 295
D V++N M+ Y + ++LKLF L + +RS F +T+ + G+
Sbjct: 479 NFDLVAWNAMMAGYTQSHDGHKTLKLFA-LMHKQGERSDDFTLATVFKTCGFLFAINQGK 537
Query: 296 QIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKG 355
Q+H I + ++ V++ ++DMY KCG A+ F ++ V WT MIS ++ G
Sbjct: 538 QVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENG 597
Query: 356 NLEEALNLFIEMCRANISADQATFXXXXXXXXXXXXXXXGKQLHSFVIRSGFMSNVFSGS 415
E A ++F +M + D+ T G+Q+H+ ++ ++ F G+
Sbjct: 598 EEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGT 657
Query: 416 ALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP 475
+L+DMYAK GS+ DA FK + NI +WNA++ AQ+G+ + TL+ F+ M G +P
Sbjct: 658 SLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKP 717
Query: 476 DXXXXXXXXXACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKL 535
D ACSH GL+ E ++ SM Y ++P+ EHY+ + D L R+G +AE L
Sbjct: 718 DKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENL 777
Query: 536 MAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595
+ M E M+ +++ +CR+ + E K+ A +L ++E L D++ YV +SN+YA A +
Sbjct: 778 IESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPL-DSSAYVLLSNMYAAASK 836
Query: 596 WESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKK 655
W+ + + M+ V+K +SW+E+K+K+H+F +D + QT I RK++++++++K+
Sbjct: 837 WDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQ 896
Query: 656 EGYKPDTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAA 715
EGY P+T L D +EE K +L YHSE+LA+AF L++TP +PI V+KNLR C DCH A
Sbjct: 897 EGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNA 956
Query: 716 IKLISKITGREITVRDSSRFHHFKDGFCSCRDFW 749
+K I+K+ REI +RD++RFH FKDG CSC D+W
Sbjct: 957 MKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1090 (388.8 bits), Expect = 4.2e-132, Sum P(2) = 4.2e-132
Identities = 222/542 (40%), Positives = 313/542 (57%)
Query: 208 NVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQ 267
N + N+L+ + +A +LF M E D VS+ MI A N KE+++ FRE++
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMK 262
Query: 268 FTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFE 327
Q+PF ++L + G+QIH I T + V ++L+DMY KC
Sbjct: 263 VQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLH 322
Query: 328 EAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFXXXXXXXX 387
AK +F + + V WTAM+ Y Q G EEA+ +F++M R+ I D T
Sbjct: 323 YAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACA 382
Query: 388 XXXXXXXGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNA 447
G Q H I SG + V ++L+ +Y K G + D+ + F EM R+ VSW A
Sbjct: 383 NVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTA 442
Query: 448 LISACAQNGDAQATLKSFEDMVQSGYQPDXXXXXXXXXACSHCGLIEEGLQYFNSMTQKY 507
++SA AQ G A T++ F+ MVQ G +PD ACS GL+E+G +YF MT +Y
Sbjct: 443 MVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEY 502
Query: 508 KLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKA 567
+ P HY+ M+D+ RSG +EA + + MPF PD I W++++++CR NLE K A
Sbjct: 503 GIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWA 562
Query: 568 ADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVH 627
A+ L +++ A Y +S+IYA G+W+SV+Q+++ MRE+ V+K SW++ K K+H
Sbjct: 563 AESLIELDPHHPAG-YTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLH 621
Query: 628 VFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSCALHDEDEEIKVESLKYHSERLAI 687
F+A+DE P ++I K+E L ++ GYKPDTS HD +E +KV+ L YHSERLAI
Sbjct: 622 SFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAI 681
Query: 688 AFALINTPEGSPILVMKNLRACTDCHAAIKLISKITGREITVRDSSRFHHFKDGFCSCRD 747
AF LI P G PI V KNLR C DCH A K IS +TGREI VRD+ RFH FKDG CSC D
Sbjct: 682 AFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGD 741
Query: 748 FW 749
FW
Sbjct: 742 FW 743
|
|
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1242 (442.3 bits), Expect = 3.3e-130, Sum P(2) = 3.3e-130
Identities = 256/739 (34%), Positives = 405/739 (54%)
Query: 10 NMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGS 69
N ++ +V+ GNL A +F M +R SW +L+GGY+++ F EA L+ M GG
Sbjct: 133 NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGV 192
Query: 70 DPDYVTFATLLSGCSE-PDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLAR 128
PD TF +L C PD A +VH ++++GY + + N+L+ Y K + AR
Sbjct: 193 KPDVYTFPCVLRTCGGIPDLARGK-EVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR 251
Query: 129 RVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLA 188
+F MP++D +S+NA+I+G+ + G+ E ++LF M+ L P T + +SA L
Sbjct: 252 LLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLG 311
Query: 189 DIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMIT 248
D LGR +HA+V+ T F ++ V N+L +Y EA KLF M D VS+ MI+
Sbjct: 312 DRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMIS 371
Query: 249 CYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAIS 308
Y +N +++ +R + + + +LS A DL G ++H I IS
Sbjct: 372 GYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLIS 431
Query: 309 EVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMC 368
V VAN+L++MY+KC ++A +IF N+ + + WT++I+ EAL +F+
Sbjct: 432 YVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQM 490
Query: 369 RANISADQATFXXXXXXXXXXXXXXXGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLK 428
+ + + T GK++H+ V+R+G + F +ALLDMY + G +
Sbjct: 491 KMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMN 550
Query: 429 DAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDXXXXXXXXXACS 488
A F ++++ SWN L++ ++ G ++ F+ MV+S +PD CS
Sbjct: 551 TAWSQFNSQ-KKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCS 609
Query: 489 HCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMW 548
++ +GL YF+ M + Y + P +HYA +VD+L R+G EA K + +MP PD +W
Sbjct: 610 KSQMVRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVW 668
Query: 549 SSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608
+++N+CRIH ++ + +A +F+++K + Y+ + N+YA G+W V++V++ M+E
Sbjct: 669 GALLNACRIHHKIDLGELSAQHIFELDK-KSVGYYILLCNLYADCGKWREVAKVRRMMKE 727
Query: 609 RGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSCALHD 668
G+ SWVE+K KVH F ++D+ HPQT EI +E ++M + G + + D
Sbjct: 728 NGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMD 787
Query: 669 EDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLISKITGREIT 728
E E + E HSER AIAF LINT G PI V KNL C +CH +K ISK REI+
Sbjct: 788 ETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREIS 847
Query: 729 VRDSSRFHHFKDGFCSCRD 747
VRD+ FHHFKDG CSC D
Sbjct: 848 VRDAEHFHHFKDGECSCGD 866
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1277 (454.6 bits), Expect = 3.5e-130, P = 3.5e-130
Identities = 262/747 (35%), Positives = 418/747 (55%)
Query: 3 NQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVD 62
+ +T N L+S Y GNL +A +F++M R AV++ LI G SQ +A +LF
Sbjct: 320 SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 379
Query: 63 MRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIR 122
M DG +PD T A+L+ CS T Q+HA K G+ S I +L++ Y K
Sbjct: 380 MHLDG-LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCA 438
Query: 123 CLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALS 182
++ A F E ++ V +N ++ + + ++F +MQ P+ +T+ + L
Sbjct: 439 DIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 498
Query: 183 AGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVS 242
+ L D+ LG Q+H+ ++KTNF N +V + L+D+Y+K + A + D VS
Sbjct: 499 TCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVS 558
Query: 243 YNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTI 302
+ MI Y ++L FR++ + + +S A L+ G+QIH Q
Sbjct: 559 WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQAC 618
Query: 303 VTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALN 362
V+ S++ N+LV +Y++CG+ EE+ F + W A++S + Q GN EEAL
Sbjct: 619 VSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALR 678
Query: 363 LFIEMCRANISADQATFXXXXXXXXXXXXXXXGKQLHSFVIRSGFMSNVFSGSALLDMYA 422
+F+ M R I + TF GKQ+H+ + ++G+ S +AL+ MYA
Sbjct: 679 VFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYA 738
Query: 423 KSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDXXXXXX 482
K GS+ DA + F E+ +N VSWNA+I+A +++G L SF+ M+ S +P+
Sbjct: 739 KCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVG 798
Query: 483 XXXACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFE 542
ACSH GL+++G+ YF SM +Y L PK EHY +VD+L R+G A++ + +MP +
Sbjct: 799 VLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIK 858
Query: 543 PDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQV 602
PD ++W +++++C +HKN+E + AA L ++E D+A YV +SN+YAV+ +W++
Sbjct: 859 PDALVWRTLLSACVVHKNMEIGEFAAHHLLELEP-EDSATYVLLSNLYAVSKKWDARDLT 917
Query: 603 KKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDT 662
++ M+E+GV+K SW+E+K+ +H F D+ HP +EI ++L + + GY D
Sbjct: 918 RQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDC 977
Query: 663 SCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLISKI 722
L++ E K + HSE+LAI+F L++ P PI VMKNLR C DCHA IK +SK+
Sbjct: 978 FSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKV 1037
Query: 723 TGREITVRDSSRFHHFKDGFCSCRDFW 749
+ REI VRD+ RFHHF+ G CSC+D+W
Sbjct: 1038 SNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
Identities = 262/761 (34%), Positives = 430/761 (56%)
Query: 5 NTVSTNMLISGYVKSGNLATARELFNSMV---DRTAVSWTILIGGYSQKNQFREAFKLFV 61
++V N LIS Y KSG+ A A ++F +M R VSW+ ++ Y + +A K+FV
Sbjct: 96 DSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFV 155
Query: 62 DMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGY--NSILIICNSLVDSYC 119
+ G DY + ++ CS D ++K G+ + + + C SL+D +
Sbjct: 156 EFLELGLVPNDYC-YTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGC-SLIDMFV 213
Query: 120 K-IRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFA 178
K + A +VF +M + + V++ +IT + G EAI+ F++M GF+ FT +
Sbjct: 214 KGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLS 273
Query: 179 AALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDC---VVEARKLFGEM 235
+ SA L +++LG+Q+H++ +++ V++V + L+D+Y+K V + RK+F M
Sbjct: 274 SVFSACAELENLSLGKQLHSWAIRSGLVDDVECS--LVDMYAKCSADGSVDDCRKVFDRM 331
Query: 236 PEVDGVSYNVMITCYAWN-EQYKESLKLFRELQFTR--FDRSQFPFSTLLSVVANKLDLQ 292
+ +S+ +IT Y N E++ LF E+ T+ + + F FS+ N D +
Sbjct: 332 EDHSVMSWTALITGYMKNCNLATEAINLFSEM-ITQGHVEPNHFTFSSAFKACGNLSDPR 390
Query: 293 IGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYV 352
+G+Q+ Q S VANS++ M+ K R E+A+ F +LS + V + +
Sbjct: 391 VGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTC 450
Query: 353 QKGNLEEALNLFIEMCRANISADQATFXXXXXXXXXXXXXXXGKQLHSFVIRSGFMSNVF 412
+ N E+A L E+ + TF G+Q+HS V++ G N
Sbjct: 451 RNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQP 510
Query: 413 SGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSG 472
+AL+ MY+K GS+ A + F M RN++SW ++I+ A++G A L++F M++ G
Sbjct: 511 VCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEG 570
Query: 473 YQPDXXXXXXXXXACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEA 532
+P+ ACSH GL+ EG ++FNSM + +K++PK EHYA MVD+LCR+G +A
Sbjct: 571 VKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDA 630
Query: 533 EKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAV 592
+ + MPF+ D ++W + + +CR+H N E K AA ++ +++ AA Y+ +SNIYA
Sbjct: 631 FEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAA-YIQLSNIYAC 689
Query: 593 AGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQE 652
AG+WE +++++ M+ER + K SW+E+ K+H F D HP ++I +++ L+ E
Sbjct: 690 AGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITE 749
Query: 653 MKKEGYKPDTSCALH---DEDEEIKVESLKY-HSERLAIAFALINTPEGSPILVMKNLRA 708
+K+ GY PDT LH +E++E + E L Y HSE++A+AF LI+T + P+ V KNLR
Sbjct: 750 IKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRV 809
Query: 709 CTDCHAAIKLISKITGREITVRDSSRFHHFKDGFCSCRDFW 749
C DCH A+K IS ++GREI +RD +RFHHFKDG CSC D+W
Sbjct: 810 CGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9S7F4 | PP206_ARATH | No assigned EC number | 0.6063 | 1.0 | 0.9078 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00037946001 | SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (820 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 749 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-171 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-60 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-55 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-41 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 6e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.004 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 556 bits (1434), Expect = 0.0
Identities = 280/741 (37%), Positives = 426/741 (57%), Gaps = 11/741 (1%)
Query: 10 NMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGS 69
N ++S +V+ G L A +F M +R SW +L+GGY++ F EA L+ M G
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGV 183
Query: 70 DPDYVTFATLLSGCSE-PDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDL-- 126
PD TF +L C PD A +VHA +++FG+ + + N+L+ Y K C D+
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGR-EVHAHVVRFGFELDVDVVNALITMYVK--CGDVVS 240
Query: 127 ARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVG 186
AR VF MP++D +S+NA+I+G+ + G E ++LF M+ L P T + +SA
Sbjct: 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300
Query: 187 LADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVM 246
L D LGR++H +VVKT F +V V N+L+ +Y EA K+F M D VS+ M
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360
Query: 247 ITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTA 306
I+ Y N ++L+ + ++ + +++LS A DL +G ++H
Sbjct: 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420
Query: 307 ISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIE 366
IS V VAN+L++MY+KC ++A E+F N+ + WT++I+ EAL F +
Sbjct: 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480
Query: 367 MCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGS 426
M + + T + L A A + +L GK++H+ V+R+G + F +ALLD+Y + G
Sbjct: 481 M-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
Query: 427 LKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSA 486
+ A F E+++VSWN L++ +G ++ F MV+SG PD V+ +S+L A
Sbjct: 540 MNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598
Query: 487 CSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEI 546
CS G++ +GL+YF+SM +KY + P +HYA +VD+L R+G EA + +MP PD
Sbjct: 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPA 658
Query: 547 MWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAM 606
+W +++N+CRIH+++E + AA +F+++ Y+ + N+YA AG+W+ V++V+K M
Sbjct: 659 VWGALLNACRIHRHVELGELAAQHIFELDP-NSVGYYILLCNLYADAGKWDEVARVRKTM 717
Query: 607 RERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSCAL 666
RE G+ SWVE+K KVH F +DE HPQ EI +E ++MK G S ++
Sbjct: 718 RENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM 777
Query: 667 HDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLISKITGRE 726
DE E K + HSERLAIAF LINT G PI V KNL C +CH +K ISKI RE
Sbjct: 778 -DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRRE 836
Query: 727 ITVRDSSRFHHFKDGFCSCRD 747
I+VRD+ +FHHFKDG CSC D
Sbjct: 837 ISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 509 bits (1312), Expect = e-171
Identities = 231/625 (36%), Positives = 374/625 (59%), Gaps = 8/625 (1%)
Query: 129 RVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLG--FKPSDFTFAAALSAGVG 186
R+ +K VS + I G + EA++LF E+ G F T+ A + A +
Sbjct: 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELF-EILEAGCPFTLPASTYDALVEACIA 135
Query: 187 LADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVM 246
L I + V+ V + F + ++ N +L ++ K +++AR+LF EMPE + S+ +
Sbjct: 136 LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTI 195
Query: 247 ITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTA 306
I Y+E+ LFRE+ D F +L A + G+Q+H + T
Sbjct: 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255
Query: 307 ISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIE 366
+ + V+ +L+DMY+KCG E+A+ +F + +TV W +M++ Y G EEAL L+ E
Sbjct: 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYE 315
Query: 367 MCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGS 426
M + +S DQ TF+ ++R + LA L KQ H+ +IR+GF ++ + +AL+D+Y+K G
Sbjct: 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375
Query: 427 LKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSA 486
++DA F MP +N++SWNALI+ +G ++ FE M+ G P+ V+ L+VLSA
Sbjct: 376 MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 487 CSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEI 546
C + GL E+G + F SM++ ++++P+ HYA M+++L R G DEA ++ + PF+P
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN 495
Query: 547 MWSSVINSCRIHKNLEFAKKAADQLFKM--EKLRDAAPYVAMSNIYAVAGQWESVSQVKK 604
MW++++ +CRIHKNLE + AA++L+ M EKL + YV + N+Y +G+ ++V +
Sbjct: 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNN---YVVLLNLYNSSGRQAEAAKVVE 552
Query: 605 AMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSC 664
++ +G+ A +W+E+K + H F + D LHPQ+ EI +K++ LM+E+ + GY + +
Sbjct: 553 TLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENE 612
Query: 665 ALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLISKITG 724
L D DE+ + S +YHSE+LAIAF LINT E +P+ + ++ R C DCH IK I+ +T
Sbjct: 613 LLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTK 672
Query: 725 REITVRDSSRFHHFKDGFCSCRDFW 749
REI VRD+SRFHHFK G CSC D+W
Sbjct: 673 REIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 4e-60
Identities = 117/427 (27%), Positives = 209/427 (48%), Gaps = 15/427 (3%)
Query: 143 NALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVK 202
N+ + G E+A+KL MQ L + + A + G +V + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 203 TNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKL 262
++ V + NA+L ++ + +V A +FG+MPE D S+NV++ YA + E+L L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 263 FRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAK 322
+ + + + F +L DL GR++H + +V V N+L+ MY K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 323 CGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASI 382
CG A+ +F + + W AMIS Y + G E L LF M ++ D T S+
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 383 LRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNI 442
+ A L LG+++H +V+++GF +V ++L+ MY GS +A + F M ++
Sbjct: 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354
Query: 443 VSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNS 502
VSW A+IS +NG L+++ M Q PD +++ SVLSAC+ G ++ G++
Sbjct: 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL--- 411
Query: 503 MTQKYKLRPKKEHYA------SMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCR 556
++L +K + +++++ + C D+A ++ +P E D I W+S+I R
Sbjct: 412 ----HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLR 466
Query: 557 I-HKNLE 562
+ ++ E
Sbjct: 467 LNNRCFE 473
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 1e-55
Identities = 112/405 (27%), Positives = 195/405 (48%), Gaps = 4/405 (0%)
Query: 51 NQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILII 110
+ REA +LF + T+ L+ C + + V+ + G+ +
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 111 CNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGF 170
N ++ + K L ARR+F EMP+++ S+ +I G G EA LF EM G
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 171 KPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARK 230
TF L A GL G+Q+H V+KT V + FV+ AL+D+YSK + +AR
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
Query: 231 LFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLD 290
+F MPE V++N M+ YA + +E+L L+ E++ + QF FS ++ + +
Sbjct: 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340
Query: 291 LQIGRQIHTQTIVTTAISEVKVANS-LVDMYAKCGRFEEAKEIFANLSHISTVPWTAMIS 349
L+ +Q H I T ++ VAN+ LVD+Y+K GR E+A+ +F + + + W A+I+
Sbjct: 341 LEHAKQAHAGLIRTGFPLDI-VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399
Query: 350 AYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRS-GFM 408
Y G +A+ +F M ++ + TF ++L A G ++ + +
Sbjct: 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459
Query: 409 SNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVS-WNALISAC 452
+ ++++ + G L +A + P + V+ W AL++AC
Sbjct: 460 PRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC 504
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 7e-41
Identities = 120/447 (26%), Positives = 206/447 (46%), Gaps = 74/447 (16%)
Query: 10 NMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGS 69
N ++ +VK G L AR LF+ M +R SW +IGG +REAF LF +M D GS
Sbjct: 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED-GS 220
Query: 70 DPDYVTFATLLSGCSEPDTANELIQVHADIIKFG-YNSILIICNSLVDSYCKIRCLDLAR 128
D + TF +L + +A Q+H ++K G + C +L+D Y K ++ AR
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC-ALIDMYSKCGDIEDAR 279
Query: 129 RVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLA 188
VF MP+K +V++N+++ G+A G +EEA+ L+ EM+ G FTF+ + LA
Sbjct: 280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339
Query: 189 DIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMIT 248
+ +Q HA +++T F ++ AL+DLYSK + +AR +F MP + +S+N +I
Sbjct: 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399
Query: 249 CYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAIS 308
Y + + +++++F + I + + ++
Sbjct: 400 GYGNHGRGTKAVEMFERM------------------------------IA-EGVAPNHVT 428
Query: 309 EVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAM-----ISAYVQKGNLEEALNL 363
+ V ++ G E+ EIF ++S + AM I ++G L+EA
Sbjct: 429 FLAVLSAC----RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA- 483
Query: 364 FIEMCRANISADQATFASILRASAELASLSLGK------------QLHSFVIRSGFMSNV 411
I RA +A++L A +L LG+ +L+++V+
Sbjct: 484 MIR--RAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV-------- 533
Query: 412 FSGSALLDMYAKSGSLKDA---IQTFK 435
LL++Y SG +A ++T K
Sbjct: 534 -----LLNLYNSSGRQAEAAKVVETLK 555
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 6e-23
Identities = 49/129 (37%), Positives = 63/129 (48%), Gaps = 23/129 (17%)
Query: 618 SWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSCALHDEDEE----- 672
W E + D HP E L Q +K EG P+T HD D E
Sbjct: 4 VWSE----GKKTLSGDGSHPT------SKEELFQRIKVEGVVPETKEIGHDVDAEEFRDN 53
Query: 673 -IKVESLKYHSERLAIAFALINTPEGSPILVMKNLRA-CTDCHAAIKLISKITGREITVR 730
IK + L H+E+ A+A+ L+ T ++K L+ C DCH + I+K TGREI VR
Sbjct: 54 GIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREIIVR 107
Query: 731 DSSRFHHFK 739
D SRFHHFK
Sbjct: 108 DPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 1e-18
Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 4/231 (1%)
Query: 7 VSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTD 66
V N LI Y K + A E+F+++ ++ +SWT +I G N+ EA F M
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484
Query: 67 GGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDL 126
P+ VT LS C+ ++HA +++ G + N+L+D Y + ++
Sbjct: 485 --LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542
Query: 127 ARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVG 186
A F +KD VS+N L+TG+ G A++LF M G P + TF + L A
Sbjct: 543 AWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601
Query: 187 LADIALGRQV-HAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMP 236
+ G + H+ K + N+ ++DL + + EA +MP
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 3e-10
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 137 KDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSA 183
D V++N LI G+ K+G EEA+KLF EM+ G KP+ +T++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 3e-09
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 38 VSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGC 83
V++ LI GY +K + EA KLF +M+ G P+ T++ L+ G
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK-PNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 8e-09
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 340 STVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRA 385
V + +I Y +KG +EEAL LF EM + I + T++ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 4e-08
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 5 NTVSTNMLISGYVKSGNLATARELFNSMVDR----TAVSWTILIGGYSQ 49
+ V+ N LI GY K G + A +LFN M R +++ILI G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 5e-08
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 441 NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSH 489
++V++N LI + G + LK F +M + G +P+ + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 5e-08
Identities = 50/249 (20%), Positives = 106/249 (42%), Gaps = 28/249 (11%)
Query: 423 KSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLS 482
K ++K+A + K + + ++N L+S CA + D L+ + ++G + D +
Sbjct: 418 KQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTT 477
Query: 483 VLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDE---AEKLMAQM 539
++S C+ G ++ + F+ M + + +++D R+G + A +M
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536
Query: 540 PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK-----LRDAAPYVAMSNIYAVAG 594
+PD ++++++I++C ++ +A D L +M+ D A+ A AG
Sbjct: 537 NVKPDRVVFNALISACGQSGAVD---RAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593
Query: 595 QWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTN--EIRRKIENLMQE 652
Q + +V + + E ++ V+T Q + I +
Sbjct: 594 QVDRAKEVYQMIHEYNIKGTPE-----------VYTIAVNSCSQKGDWDFALSI---YDD 639
Query: 653 MKKEGYKPD 661
MKK+G KPD
Sbjct: 640 MKKKGVKPD 648
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 109 IICNSLVDSYCKIRCLDLARRVFKEMPQK----DSVSFNALITGFAK 151
+ N+L+D YCK ++ A ++F EM ++ + +++ LI G K
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-07
Identities = 61/325 (18%), Positives = 139/325 (42%), Gaps = 24/325 (7%)
Query: 278 FSTLLSVVAN--KLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFAN 335
++TL+S A K+D ++ + + + V +L+D A+ G+ +A +
Sbjct: 475 YTTLISTCAKSGKVDAMF--EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532
Query: 336 LSHISTVP----WTAMISAYVQKGNLEEALNLFIEMCRAN---ISADQATFASILRASAE 388
+ + P + A+ISA Q G ++ A ++ EM +A I D T ++++A A
Sbjct: 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM-KAETHPIDPDHITVGALMKACAN 591
Query: 389 LASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNI----VS 444
+ K+++ + + ++ ++ G A+ + +M ++ + V
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 445 WNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMT 504
++AL+ GD + +D + G + +VS S++ ACS+ ++ L+ + +
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI- 710
Query: 505 QKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMP---FEPDEIMWSSVINSCRIHKNL 561
+ KLRP +++ LC +A +++++M P+ I +S ++ + +
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770
Query: 562 EFAKKAADQLFKMEKLRDAAPYVAM 586
+ L K P + M
Sbjct: 771 D----VGLDLLSQAKEDGIKPNLVM 791
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 7 VSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTD 66
V+ L+ Y K G + AR +F+ M + +SW LI GY + +A ++F M +
Sbjct: 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 67 GGSDPDYVTFATLLSGCS 84
G + P++VTF +LS C
Sbjct: 421 GVA-PNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 7e-07
Identities = 62/310 (20%), Positives = 119/310 (38%), Gaps = 46/310 (14%)
Query: 2 PNQNTVSTNMLISGYVKSGNLATARELFNSMV------DRTAVSWTILIGGYSQKNQFRE 55
N +T LI G ++G +A A + M DR V + LI Q
Sbjct: 505 ANVHTFGA--LIDGCARAGQVAKAFGAYGIMRSKNVKPDR--VVFNALISACGQSGAVDR 560
Query: 56 AFKLFVDMRTDGGS-DPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSL 114
AF + +M+ + DPD++T L+ C+ + +V+ I ++ +
Sbjct: 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620
Query: 115 VDSYCKIRCLDLARRVFKEMPQK----DSVSFNALITGFAKEGLNEEAIKLFVEMQHLGF 170
V+S + D A ++ +M +K D V F+AL+ G ++A ++ + + G
Sbjct: 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680
Query: 171 KPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARK 230
K ++++ + A + L+LY +++ K
Sbjct: 681 KLGTVSYSSLMGACSNAKNWKKA----------------------LELYED----IKSIK 714
Query: 231 LFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLD 290
L P V + N +IT Q ++L++ E++ + +S LL K D
Sbjct: 715 L---RPTVS--TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769
Query: 291 LQIGRQIHTQ 300
+G + +Q
Sbjct: 770 ADVGLDLLSQ 779
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 49/273 (17%), Positives = 117/273 (42%), Gaps = 21/273 (7%)
Query: 278 FSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLS 337
F+ L+SV A+ D+ ++ ++ K+ +L+ AK G+ + E+F +
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 338 HISTVP----WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLS 393
+ + A+I + G + +A + M N+ D+ F +++ A + ++
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
Query: 394 LGKQLHSFVIRSGFMSNV-------FSGSALLDMYAKSGSLKDAIQTFKEMPERNIVS-- 444
+F + + + + AL+ A +G + A + ++ + E NI
Sbjct: 560 -----RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 445 --WNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNS 502
+ +++C+Q GD L ++DM + G +PD V +++ H G +++ +
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674
Query: 503 MTQKYKLRPKKEHYASMVDILCRSGCFDEAEKL 535
+K ++ Y+S++ + + +A +L
Sbjct: 675 A-RKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-06
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 342 VPWTAMISAYVQKGNLEEALNLFIEMCRANI 372
V + ++IS Y + G LEEAL LF EM +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 140 VSFNALITGFAKEGLNEEAIKLFVEMQHLGF 170
V++N+LI+G+ K G EEA++LF EM+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 138 DSVSFNALITGFAKEGLNEEAIKLFVEMQ 166
D V++N LI G + G +EA++L EM+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 3e-05
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 410 NVFSGSALLDMYAKSGSLKDAIQTFKEMPER----NIVSWNALISACAQ 454
+V + + L+D Y K G +++A++ F EM +R N+ +++ LI +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 208 NVFVANALLDLYSKHDCVVEARKLFGEMPE----VDGVSYNVMITCYA 251
+V N L+D Y K V EA KLF EM + + +Y+++I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 38 VSWTILIGGYSQKNQFREAFKLFVDMRTDG 67
V++ LI GY + + EA +LF +M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 4 QNTVSTNMLISGYVKSGNLATARELFNSMVDRTA----VSWTILIGGYSQKNQFREAFKL 59
++ VS N+L++GYV G + A ELFN MV+ V++ L+ S+ + +
Sbjct: 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611
Query: 60 FVDMRTDGGSDPD---YVTFATLLSGCSEPDTANELIQ 94
F M P+ Y LL + A I
Sbjct: 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 344 WTAMISAYVQKGNLEEALNLFIEMCRANISAD 375
+ +I + G +EEAL LF EM I D
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 140 VSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSD 174
V++N LI G K G EEA++LF EM+ G +P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 5 NTVSTNMLISGYVKSGNLATARELFNSMV 33
+ V+ N LI G ++G + A EL + M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 442 IVSWNALISACAQNGDAQATLKSFEDMVQSGYQP 475
+ ++NAL+ A A+ GD L E+M SG +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.003
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 516 YASMVDILCRSGCFDEAEKLMAQMP---FEPDEIMWSSVINSC 555
Y +++D C+ G +EA KL +M +P+ +S +I+
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 75/402 (18%), Positives = 151/402 (37%), Gaps = 60/402 (14%)
Query: 104 YNSILIICNSLVDSYCKIRCLDLAR-RVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLF 162
+N ++ +C S D +R L L + K D + LI+ AK G + ++F
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLK----ADCKLYTTLISTCAKSGKVDAMFEVF 495
Query: 163 VEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAF-----VVKTNFVENVFVANALLD 217
EM + G + + TF A L G A G+ AF + N + V NAL+
Sbjct: 496 HEMVNAGVEANVHTFGA-LIDGCARA----GQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 218 LYSKHDCVVEARKLFGEMP------EVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRF 271
+ V A + EM + D ++ ++ A Q + ++++ + +
Sbjct: 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH--EY 608
Query: 272 DRSQFP--FSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEA 329
+ P ++ ++ + K D I+ + ++LVD+ G ++A
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 330 KEIFANLS----HISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRA 385
EI + + TV +++++ A N ++AL L+ ++ + +T +++ A
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
Query: 386 SAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSW 445
E G QL K+ + ++ P N +++
Sbjct: 729 LCE------GNQL-----------------------PKALEVLSEMKRLGLCP--NTITY 757
Query: 446 NALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSAC 487
+ L+ A + DA L + G +P+ V + C
Sbjct: 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 109 IICNSLVDSYCKIRCLDLARRVFKEMPQKD 138
+ N+L+D CK ++ A +FKEM ++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 38 VSWTILIGGYSQKNQFREAFKLFVDMRTDG 67
V++ LI G + + EA +LF +M+ G
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 749 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.75 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.72 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.65 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.61 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.58 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.53 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.51 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.48 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.43 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.42 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.41 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.4 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.4 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.39 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.39 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.38 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.37 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.36 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.34 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.33 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.33 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.3 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.22 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.2 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.14 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.14 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.13 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.12 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.12 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.12 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.07 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.06 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.05 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.0 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.0 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.0 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.99 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.98 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.96 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.93 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.91 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.9 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.89 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.85 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.85 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.84 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.78 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.76 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.74 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.69 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.69 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.68 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.67 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.67 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.66 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.64 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.63 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.6 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.53 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.53 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.51 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.49 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.45 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.45 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.4 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.39 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.39 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.35 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.34 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.34 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.34 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.3 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.3 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.3 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.28 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.26 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.25 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.24 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.24 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.22 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.2 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.18 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.15 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.15 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.12 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.11 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.06 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.02 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.01 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.99 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.95 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.94 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.87 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.83 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.8 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.77 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.73 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.72 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.72 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.7 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.67 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.64 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.62 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.62 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.58 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.58 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.56 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.51 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.51 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.49 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.46 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.45 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.38 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.38 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.38 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.35 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.33 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.33 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.31 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.28 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.25 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.23 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.23 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.23 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.14 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.12 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.11 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.09 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.09 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.08 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.07 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.07 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.05 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.03 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.01 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.01 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.0 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.99 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.95 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.94 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.92 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.85 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.85 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.82 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.77 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.77 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.76 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.75 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.73 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.69 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.69 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.63 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.58 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.57 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.54 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.54 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.53 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.53 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.51 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.49 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.38 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.38 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.3 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.29 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.18 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.15 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.04 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.02 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.02 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.96 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.95 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.92 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.87 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.82 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.76 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.69 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.49 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.47 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.47 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.07 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.06 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.01 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.99 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.95 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.69 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.66 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.53 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.49 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.35 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.3 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.1 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 93.9 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.63 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.62 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.5 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.39 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.29 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.14 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.12 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.03 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 92.93 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.71 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.66 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.58 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.38 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.37 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.28 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 92.23 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.22 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.1 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.08 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.89 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.77 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.55 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.49 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.42 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.19 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.18 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.18 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.07 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.06 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.03 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.84 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.77 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.89 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.92 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 88.83 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 88.33 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.24 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.09 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 88.09 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.91 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.83 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.83 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 87.67 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.57 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.51 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.4 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 87.28 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 87.17 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.07 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.05 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.04 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.85 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.08 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 85.92 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.35 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.27 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.57 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.28 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.09 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.85 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 83.7 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 83.67 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.1 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 82.61 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.27 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 82.0 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.9 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 81.54 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.47 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 81.04 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-146 Score=1265.59 Aligned_cols=741 Identities=37% Similarity=0.657 Sum_probs=732.4
Q ss_pred CCCCcchhHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHH
Q 004487 2 PNQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLS 81 (749)
Q Consensus 2 ~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~ 81 (749)
+.+++.++|+||++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|... |+.||..||+++++
T Consensus 117 ~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLR 195 (857)
T ss_pred CCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 004487 82 GCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKL 161 (749)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l 161 (749)
+|+..+++..+.++|..+.+.|+.||+.++|+||.+|+++|+++.|.++|++|++||.++||+||.+|++.|++++|+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcc
Q 004487 162 FVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGV 241 (749)
Q Consensus 162 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~ 241 (749)
|++|.+.|+.||..||+.++.+|++.|+++.|+++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|+.+|++
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Q 004487 242 SYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYA 321 (749)
Q Consensus 242 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 321 (749)
+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHH
Q 004487 322 KCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSF 401 (749)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 401 (749)
++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. ++.||..||+++|.+|++.|+++.++++|..
T Consensus 436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999986 6999999999999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004487 402 VIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLL 481 (749)
Q Consensus 402 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 481 (749)
+.+.|+.++..++|+|+++|+|+|++++|.++|+.+ ++|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH
Q 004487 482 SVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNL 561 (749)
Q Consensus 482 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 561 (749)
.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+|.|++++|.+++++|+++||..+|++|+.+|+.+|+.
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcChHH
Q 004487 562 EFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNE 641 (749)
Q Consensus 562 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~ 641 (749)
+.|+.+.+++++++| .+...|+.|+++|+..|+|++|.++++.|+++|++|+||+|||++++++|.|.+||.+||+.++
T Consensus 674 e~~e~~a~~l~~l~p-~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~ 752 (857)
T PLN03077 674 ELGELAAQHIFELDP-NSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKE 752 (857)
T ss_pred HHHHHHHHHHHhhCC-CCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcCCCCcccccCchhhhhHhHhhhHHHHHHHHhhccCCCCCcEEEEeccccCcchhHHHHHhhh
Q 004487 642 IRRKIENLMQEMKKEGYKPDTSCALHDEDEEIKVESLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKLISK 721 (749)
Q Consensus 642 ~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~~~~s~ 721 (749)
||.+|++|..+|++.||.||+..++ ++++++|+..+++||||||+|||||+||+|+||||+||||||+|||+++||||+
T Consensus 753 i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~ 831 (857)
T PLN03077 753 INTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISK 831 (857)
T ss_pred HHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHH
Confidence 9999999999999999999999988 447889999999999999999999999999999999999999999999999999
Q ss_pred ccCceEEEccCCccccccccccCCCC
Q 004487 722 ITGREITVRDSSRFHHFKDGFCSCRD 747 (749)
Q Consensus 722 ~~~~~~~~~d~~~~h~~~~g~~s~~~ 747 (749)
+++|+|||||.+|||||+||+|||||
T Consensus 832 ~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 832 IVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-126 Score=1068.00 Aligned_cols=613 Identities=37% Similarity=0.651 Sum_probs=606.2
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHH
Q 004487 136 QKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLG-FKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANA 214 (749)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 214 (749)
.++.++|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.++|..+.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999999865 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHH
Q 004487 215 LLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIG 294 (749)
Q Consensus 215 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 294 (749)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..+..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCc
Q 004487 295 RQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISA 374 (749)
Q Consensus 295 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 374 (749)
+++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHh
Q 004487 375 DQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQ 454 (749)
Q Consensus 375 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 454 (749)
|..||++++.+|++.|.++.|+++|..+.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004487 455 NGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEK 534 (749)
Q Consensus 455 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 534 (749)
+|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCccC
Q 004487 535 LMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKV 614 (749)
Q Consensus 535 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 614 (749)
++++|+++|+..+|++|+.+|+.+|+++.|+.+++++++++| .+..+|..|+++|++.|+|++|.++++.|+++|+++.
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred CceeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCcCCCCcccccCchhhhhHhHhhhHHHHHHHHhhccC
Q 004487 615 TAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSCALHDEDEEIKVESLKYHSERLAIAFALINT 694 (749)
Q Consensus 615 ~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 694 (749)
||+||+++++++|.|.+||.+||+..+|+.++.++..+|++.||.||+.+++|++++++|+..+.+||||||+|||||+|
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~ 642 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT 642 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeccccCcchhHHHHHhhhccCceEEEccCCccccccccccCCCCCC
Q 004487 695 PEGSPILVMKNLRACTDCHAAIKLISKITGREITVRDSSRFHHFKDGFCSCRDFW 749 (749)
Q Consensus 695 ~~~~~~~~~~nl~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~~g~~s~~~~w 749 (749)
|||+||||+||||||+|||+|+||||++++|+|||||.+|||||+||+|||||||
T Consensus 643 ~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 643 SEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-86 Score=765.91 Aligned_cols=687 Identities=25% Similarity=0.361 Sum_probs=617.8
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 004487 35 RTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSL 114 (749)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (749)
++..++|.++.+|++.|++++|+.+|+.|.+. |++|+..+|..++.+|.+.+.+..|.++|+.+.+.|..++..++|+|
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 46778999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHH
Q 004487 115 VDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGR 194 (749)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 194 (749)
|.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004487 195 QVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRS 274 (749)
Q Consensus 195 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 274 (749)
++|..+++.|+.||..++|+|+.+|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|...|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhC
Q 004487 275 QFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQK 354 (749)
Q Consensus 275 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 354 (749)
..||+.++.+|+..|+.+.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|.++||+||.+|++.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004487 355 GNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTF 434 (749)
Q Consensus 355 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 434 (749)
|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH
Q 004487 435 KEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKE 514 (749)
Q Consensus 435 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 514 (749)
++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+. |+.|+..
T Consensus 448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~ 525 (857)
T PLN03077 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGF 525 (857)
T ss_pred HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccce
Confidence 999999999999999999999999999999999986 59999999999999999999999999999999865 9999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC
Q 004487 515 HYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAG 594 (749)
Q Consensus 515 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 594 (749)
++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.++|++|.+.+..||..+|..++.+|.+.|
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 9999999999999999999999998 79999999999999999999999999999999888789999999999999999
Q ss_pred CchhHHHHHHHHH-hCCCccCCceeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCcCCCCcccccCchhh
Q 004487 595 QWESVSQVKKAMR-ERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSCALHDEDEEI 673 (749)
Q Consensus 595 ~~~~a~~~~~~m~-~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~ 673 (749)
++++|.++++.|+ +.|+.++...-.. .+....... .+++..+.+++.+..||...|..-+..+.
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~--------lv~~l~r~G-------~~~eA~~~~~~m~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYAC--------VVDLLGRAG-------KLTEAYNFINKMPITPDPAVWGALLNACR 668 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHH--------HHHHHHhCC-------CHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 9999999999998 6687664210000 000000001 12344444555578999877655444443
Q ss_pred hhHhHhhhHHHHH-HHHhhccCCCCCcEEEEeccccCcchhHHHHHhhhccCce---------EEEccCCcccccccccc
Q 004487 674 KVESLKYHSERLA-IAFALINTPEGSPILVMKNLRACTDCHAAIKLISKITGRE---------ITVRDSSRFHHFKDGFC 743 (749)
Q Consensus 674 ~~~~~~~~~~~la-~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~~~~s~~~~~~---------~~~~d~~~~h~~~~g~~ 743 (749)
..+-+. -.|+.| ..+.+.|...+.-+.+.+-....|+-.++.+....|..+. |-+ .+..|-|..|--
T Consensus 669 ~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~--~~~~~~f~~~d~ 745 (857)
T PLN03077 669 IHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV--KGKVHAFLTDDE 745 (857)
T ss_pred HcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE--CCEEEEEecCCC
Confidence 221110 112222 2345656555555444444557888889988888776662 222 246777766644
Q ss_pred C
Q 004487 744 S 744 (749)
Q Consensus 744 s 744 (749)
|
T Consensus 746 ~ 746 (857)
T PLN03077 746 S 746 (857)
T ss_pred C
Confidence 3
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-71 Score=624.73 Aligned_cols=474 Identities=25% Similarity=0.394 Sum_probs=458.1
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 004487 35 RTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSL 114 (749)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (749)
++.++|+.+|.+|.+.|++++|+++|+.|...++..||..+|+.++.+|++.++++.+.++|..|.+.|+.||+.++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 46779999999999999999999999999986468899999999999999999999999999999999999999999999
Q ss_pred HHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHH
Q 004487 115 VDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGR 194 (749)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 194 (749)
+.+|+++|+++.|+++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.++.+.++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004487 195 QVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRS 274 (749)
Q Consensus 195 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 274 (749)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|...|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhC
Q 004487 275 QFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQK 354 (749)
Q Consensus 275 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 354 (749)
..||++++.+|++.|.++.|.++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004487 355 GNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIR-SGFMSNVFSGSALLDMYAKSGSLKDAIQT 433 (749)
Q Consensus 355 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 433 (749)
|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.+++..|.+ .|+.|+..+|++++++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 69999999999999999999999999999
Q ss_pred HhhCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 004487 434 FKEMP-ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP 511 (749)
Q Consensus 434 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 511 (749)
|++|+ +|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.++ |+.+
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99997 68999999999999999999999999999875 5665 458999999999999999999999999865 7654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-70 Score=617.04 Aligned_cols=524 Identities=18% Similarity=0.238 Sum_probs=479.5
Q ss_pred CCCcchhHHHHHHHHcCCChHHHHHHHhcCCCCCcc-----hHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHH
Q 004487 3 NQNTVSTNMLISGYVKSGNLATARELFNSMVDRTAV-----SWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFA 77 (749)
Q Consensus 3 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~ 77 (749)
.++...|..++..|+++|++++|+++|+.|+.++.+ .++.++.+|.+.|..++|+++|+.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHH
Confidence 467788999999999999999999999999887655 455677889999999999999999853 9999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCC----CCCcchHHHHHHHHHhCC
Q 004487 78 TLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMP----QKDSVSFNALITGFAKEG 153 (749)
Q Consensus 78 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g 153 (749)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+||+||.+|+++|+++.|.++|++|. .||.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999998 489999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHcCCChHHHHHH
Q 004487 154 LNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVK--TNFVENVFVANALLDLYSKHDCVVEARKL 231 (749)
Q Consensus 154 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 231 (749)
++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++++.|.+ .|+.||..+|++||.+|+++|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HccCCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 004487 232 FGEMPE----VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAI 307 (749)
Q Consensus 232 f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 307 (749)
|+.|.+ ++..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999976 5679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHH
Q 004487 308 SEVKVANSLVDMYAKCGRFEEAKEIFANLS----HISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASIL 383 (749)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 383 (749)
|+..+|++|+++|+++|++++|.++|++|. .+|.++||+||.+|++.|++++|+++|++|...|+.||..||++++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999995 5888999999999999999999999999999999999999999999
Q ss_pred HHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHH
Q 004487 384 RASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYA----KSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQ 459 (749)
Q Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 459 (749)
.+|++.|+++.|.++|..|.+.|+.||..+|++|+.++. ++++..++...|+.+...+...| .+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w------------~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW------------TS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch------------HH
Confidence 999999999999999999999999999999999998743 34444444444443333333344 35
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 004487 460 ATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 460 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (749)
+|+.+|++|++.|+.||..||+.++.++...+..+.+..+++.|... +..|+..+|+++|+++++. .++|..++++|
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 69999999999999999999999998887888888888888777644 6778889999999988432 46899999998
Q ss_pred ---CCCCCHH
Q 004487 540 ---PFEPDEI 546 (749)
Q Consensus 540 ---~~~p~~~ 546 (749)
++.|+..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 7778754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=587.94 Aligned_cols=506 Identities=13% Similarity=0.188 Sum_probs=464.4
Q ss_pred CCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcch-----HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH
Q 004487 104 YNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVS-----FNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFA 178 (749)
Q Consensus 104 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 178 (749)
..++...|..++..++++|++++|.++|++|++++... ++.++.+|.+.|..++|+++|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 35677788889999999999999999999998766554 45667779999999999999998874 8999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCC----CCCcchHHHHHHHHHhcC
Q 004487 179 AALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMP----EVDGVSYNVMITCYAWNE 254 (749)
Q Consensus 179 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g 254 (749)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++|++||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999998 489999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHH--hcCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 004487 255 QYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIV--TTAISEVKVANSLVDMYAKCGRFEEAKEI 332 (749)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 332 (749)
++++|+++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+ .|+.||..+|++|+++|+++|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 67899999999999999999999999999
Q ss_pred HHhcCCC----CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCC
Q 004487 333 FANLSHI----STVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFM 408 (749)
Q Consensus 333 ~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 408 (749)
|+.|.+. +..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999864 457799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004487 409 SNVFSGSALLDMYAKSGSLKDAIQTFKEMP----ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVL 484 (749)
Q Consensus 409 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 484 (749)
|+..+|++||++|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999995 6999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH----HcC-------------------CHHHHHHHHHhC--
Q 004487 485 SACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILC----RSG-------------------CFDEAEKLMAQM-- 539 (749)
Q Consensus 485 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~-- 539 (749)
.+|++.|++++|.++|+.|.+. |+.||..+|+++++++. +++ ..++|..+|++|
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 9999999999999999999865 99999999999997643 222 236799999999
Q ss_pred -CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCc
Q 004487 540 -PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTA 616 (749)
Q Consensus 540 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 616 (749)
++.||..+|++++.++...+..+.+..+++.+......++..+|..|++.+.+. .++|..++++|.+.|+.++..
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 899999999999987778889999999998877655447899999999988322 368999999999999987653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=321.71 Aligned_cols=579 Identities=11% Similarity=0.032 Sum_probs=362.8
Q ss_pred HHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHH
Q 004487 15 GYVKSGNLATARELFNSMVD---RTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANE 91 (749)
Q Consensus 15 ~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~ 91 (749)
.+.+.|++++|...|+...+ .+...+..+...+.+.|++++|+..++.+... .+.+...+..+...+...|++++
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGL--DPDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 44455555555555554422 12334455555555666666666666555543 23344455555555556666666
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004487 92 LIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQK---DSVSFNALITGFAKEGLNEEAIKLFVEMQHL 168 (749)
Q Consensus 92 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 168 (749)
|.+.++.+.+... .+...+..+...+...|++++|.+.|+...+. +...+..++..+.+.|++++|+++++++...
T Consensus 382 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 382 AAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 6666666555432 23445555555556666666666666554431 2234445556666666666666666666543
Q ss_pred CCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC---CCcchHHH
Q 004487 169 GFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE---VDGVSYNV 245 (749)
Q Consensus 169 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~ 245 (749)
.+++..++..+...+...|+.+.|.+.+..+++.. +.+...+..+...+...|++++|.+.|+.+.. .+..++..
T Consensus 461 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 538 (899)
T TIGR02917 461 -QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILA 538 (899)
T ss_pred -CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 23445566666666666777777777776666543 23444556666666777777777777766543 24456666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCC
Q 004487 246 MITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGR 325 (749)
Q Consensus 246 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 325 (749)
+...+.+.|+.++|...+.++...+ ..+...+..+...+...|+.+.+..++..+.+.. +.+...+..+...|.+.|+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 6667777777777777777765543 2233445556666667777777777777665543 4455667777777777777
Q ss_pred HHHHHHHHHhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHH
Q 004487 326 FEEAKEIFANLSH---ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFV 402 (749)
Q Consensus 326 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 402 (749)
+++|...|+.+.+ .+...|..+...|.+.|++++|...|+++.... +.+..++..+...+...|+++.|..++..+
T Consensus 617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777766543 233446666777777777777777777766532 224556666666777777777777777766
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004487 403 IRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP--ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSL 480 (749)
Q Consensus 403 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 480 (749)
.+.. +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..+...+.+.|++++|.+.++++.+. .+.+...+
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~ 773 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLR 773 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHH
Confidence 6654 3455566666777777777777777777665 344456666677777777777777777777664 23345566
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhc
Q 004487 481 LSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIH 558 (749)
Q Consensus 481 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 558 (749)
..+...|...|+.++|.++|+.+.+. -+++...+..+...+...|+ .+|++.++++ ...| +..++..+...+...
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 66666777777777777777777643 23455667777777777777 6677777766 3334 355666667777777
Q ss_pred CCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 559 KNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 559 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
|++++|...++++++.+| .++.++..++.+|...|++++|.+++++|.
T Consensus 851 g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777777777777777 677777777777777777777777777764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-31 Score=312.94 Aligned_cols=516 Identities=11% Similarity=0.064 Sum_probs=295.8
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHH
Q 004487 83 CSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQ---KDSVSFNALITGFAKEGLNEEAI 159 (749)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 159 (749)
+...|+++.|...+..+++... .+...+..+...+.+.|++++|...++.+.. .+...|+.+...+.+.|++++|.
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3445566666666666655432 2345555666666677777777777666543 24455666777777777777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC--
Q 004487 160 KLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE-- 237 (749)
Q Consensus 160 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-- 237 (749)
++|+++.+.. +.+...+..+...+...|+.+.|.+.+..+.+.... .......++..|.+.|+.++|.++++.+..
T Consensus 384 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 461 (899)
T TIGR02917 384 EYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ 461 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 7777766542 123344445555555666666666666655544321 122333344455555555555555544432
Q ss_pred -CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCC---------------------------------CCCcchHHHHHH
Q 004487 238 -VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRF---------------------------------DRSQFPFSTLLS 283 (749)
Q Consensus 238 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------------------------------~p~~~t~~~ll~ 283 (749)
.+..+|+.+...|...|++++|...|+++..... +.+..++..+..
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 2333455555555555555555555555443211 112233333444
Q ss_pred HHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCChhHH
Q 004487 284 VVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSH---ISTVPWTAMISAYVQKGNLEEA 360 (749)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 360 (749)
.+...|+.+.+...+..+.+.. +.+...+..+...|.+.|++++|..+++.+.. .+...|..+...|.+.|++++|
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4444444444444444444332 22333444455555555555555555554432 2233355555555555555555
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-
Q 004487 361 LNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE- 439 (749)
Q Consensus 361 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 439 (749)
+..|+++.+.. +.+...+..+...+...|+.+.|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.+
T Consensus 621 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 621 VSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555554432 1233444455555555555555555555554432 22344555555566666666666666655542
Q ss_pred --CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 004487 440 --RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYA 517 (749)
Q Consensus 440 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 517 (749)
.+...|..+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+.
T Consensus 699 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~ 774 (899)
T TIGR02917 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRT 774 (899)
T ss_pred CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 23445555666666667777777777776663 344456666666777777777777777776643 234566677
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 004487 518 SMVDILCRSGCFDEAEKLMAQM-PFE-PDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (749)
.+...|.+.|++++|.+.|+++ ... ++..+++.+...+...|+ ++|+..++++++..| .++..+..++.+|...|+
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCC
Confidence 7777777777777777777776 222 356677777777777777 668888888887777 777777788888888888
Q ss_pred chhHHHHHHHHHhCC
Q 004487 596 WESVSQVKKAMRERG 610 (749)
Q Consensus 596 ~~~a~~~~~~m~~~g 610 (749)
+++|.++++++.+.+
T Consensus 853 ~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 853 ADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHHHhhC
Confidence 888888888877654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=239.80 Aligned_cols=106 Identities=66% Similarity=1.029 Sum_probs=98.9
Q ss_pred ceeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCcCCCCcccccCchhhh--------hHhHhhhHHHHHH
Q 004487 616 AYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPDTSCALHDEDEEIK--------VESLKYHSERLAI 687 (749)
Q Consensus 616 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~la~ 687 (749)
||||+++ |.|++||.+||+. ++..+|...||.|++..++|+++++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899987 9999999999987 567788889999999999998888766 5688999999999
Q ss_pred HHhhccCCCCCcEEEEecc-ccCcchhHHHHHhhhccCceEEEccCCcccccc
Q 004487 688 AFALINTPEGSPILVMKNL-RACTDCHAAIKLISKITGREITVRDSSRFHHFK 739 (749)
Q Consensus 688 ~~~~~~~~~~~~~~~~~nl-~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~ 739 (749)
||||+++ +|+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-23 Score=244.00 Aligned_cols=575 Identities=12% Similarity=0.040 Sum_probs=292.8
Q ss_pred HHHHHcCCChHHHHHHHhcCC--CC-CcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchH-------------
Q 004487 13 ISGYVKSGNLATARELFNSMV--DR-TAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTF------------- 76 (749)
Q Consensus 13 l~~~~~~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~------------- 76 (749)
++.+...++.+.|.+.++++. .| |+..+..++..+.+.|+.++|.+.++++.+. .|+...+
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~---~P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL---APDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHhcCCc
Confidence 344455555555555555542 22 3445555555555666666666666555543 2322221
Q ss_pred ----HHHHHhcCCCCChHHHHHHHHHHHHhCCCCchhH-HHHHHHHhHcCCChhHHHHHHccCCC--C-CcchHHHHHHH
Q 004487 77 ----ATLLSGCSEPDTANELIQVHADIIKFGYNSILII-CNSLVDSYCKIRCLDLARRVFKEMPQ--K-DSVSFNALITG 148 (749)
Q Consensus 77 ----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~ 148 (749)
..+.+.+...|++++|.+.++.+++...+ +... ...+.......|+.++|.+.|+++.+ | +...+..+...
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 11122344555566666665555544321 2111 11111111223555556655555543 2 23345555555
Q ss_pred HHhCCChhHHHHHHHHHHHCC------------------------------------------------------CCCCh
Q 004487 149 FAKEGLNEEAIKLFVEMQHLG------------------------------------------------------FKPSD 174 (749)
Q Consensus 149 ~~~~g~~~~A~~l~~~m~~~g------------------------------------------------------~~p~~ 174 (749)
+...|+.++|++.|+++.... ..|+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 555566666666555554321 11111
Q ss_pred hhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC--CCc---chHHHH---
Q 004487 175 FTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE--VDG---VSYNVM--- 246 (749)
Q Consensus 175 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~---~~~~~l--- 246 (749)
.. ...-.++...|+++.|...+...++.. +.+...+..|...|.+.|+.++|...|++..+ |+. ..|..+
T Consensus 271 ~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 271 RA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred HH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 00 011122334455555555555555432 22444555555555556666666655555433 111 112111
Q ss_pred ---------HHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHH
Q 004487 247 ---------ITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLV 317 (749)
Q Consensus 247 ---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 317 (749)
...+.+.|++++|+..|++...... .+...+..+-..+...|+.+.|.+.++.+++.. +.+...+..+.
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 1234455556666666655554321 122233344445555556666666655555543 12233344444
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCC------------cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCc-CHHhHHHHHH
Q 004487 318 DMYAKCGRFEEAKEIFANLSHIS------------TVPWTAMISAYVQKGNLEEALNLFIEMCRANISA-DQATFASILR 384 (749)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 384 (749)
..|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+..
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~ 503 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4443 234555555555443211 111333445555666667777766666653 34 3334445555
Q ss_pred HhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC----cc---------hHHHHHHH
Q 004487 385 ASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERN----IV---------SWNALISA 451 (749)
Q Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~~---------~~~~li~~ 451 (749)
.+.+.|+.++|...++.+++.. +.+......+...+.+.|+.++|...++.+.... .. .+..+...
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 6666667777776666665533 2233333344445556666677776666665311 10 11223445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHH
Q 004487 452 CAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFD 530 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~ 530 (749)
+...|+.++|+++++ . .+++...+..+...+...|+.++|+..|+...+. .| +...+..++.+|...|+++
T Consensus 583 l~~~G~~~eA~~~l~---~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 583 LRDSGKEAEAEALLR---Q--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHCCCHHHHHHHHH---h--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHH
Confidence 666677777766655 1 2334445555666667777777777777766642 33 3556666677777777777
Q ss_pred HHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc------hhHHHHHHHHHHcCCchhHHHH
Q 004487 531 EAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDA------APYVAMSNIYAVAGQWESVSQV 602 (749)
Q Consensus 531 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~ 602 (749)
+|++.++.. ...|+ ..++..+..++...|+.++|...++++++..| .++ ..+..++.++...|++++|...
T Consensus 655 eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~-~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 655 AARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK-SQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc-cCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777665 33343 44555566666667777777777777766654 222 3445566777777777777777
Q ss_pred HHHHHh
Q 004487 603 KKAMRE 608 (749)
Q Consensus 603 ~~~m~~ 608 (749)
++....
T Consensus 734 y~~Al~ 739 (1157)
T PRK11447 734 YKDAMV 739 (1157)
T ss_pred HHHHHh
Confidence 776653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-22 Score=239.29 Aligned_cols=556 Identities=10% Similarity=0.020 Sum_probs=411.5
Q ss_pred CCcchhHHHHHHHHcCCChHHHHHHHhcCCC--CCcch-H----------------HHHHHHHHcCCChhHHHHHHHHhH
Q 004487 4 QNTVSTNMLISGYVKSGNLATARELFNSMVD--RTAVS-W----------------TILIGGYSQKNQFREAFKLFVDMR 64 (749)
Q Consensus 4 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~-~----------------~~li~~~~~~g~~~~a~~l~~~m~ 64 (749)
.|+.++..+...+.+.|+.++|.+.+++..+ |+... + -.+...+.+.|++++|++.|+++.
T Consensus 60 ~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l 139 (1157)
T PRK11447 60 NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLF 139 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHc
Confidence 3677788889999999999999999999854 33222 1 233446889999999999999988
Q ss_pred hcCCCCCCcch-HHHHHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCc----
Q 004487 65 TDGGSDPDYVT-FATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDS---- 139 (749)
Q Consensus 65 ~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---- 139 (749)
+. .+|+... ...........++.++|...++.+++... .+...+..+...+...|+.++|...|+++.+...
T Consensus 140 ~~--~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~ 216 (1157)
T PRK11447 140 NG--APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA 216 (1157)
T ss_pred cC--CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHH
Confidence 63 4444321 11111222356899999999999998863 3667788899999999999999999887632100
Q ss_pred --ch-----------------HH----------------------------------HHHHHHHhCCChhHHHHHHHHHH
Q 004487 140 --VS-----------------FN----------------------------------ALITGFAKEGLNEEAIKLFVEMQ 166 (749)
Q Consensus 140 --~~-----------------~~----------------------------------~li~~~~~~g~~~~A~~l~~~m~ 166 (749)
.. +. .....+...|++++|+..|++..
T Consensus 217 aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 217 AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00 00 11234567899999999999998
Q ss_pred HCCCCC-ChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCC-hhHH------------HHHHHHHHcCCChHHHHHHH
Q 004487 167 HLGFKP-SDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVEN-VFVA------------NALLDLYSKHDCVVEARKLF 232 (749)
Q Consensus 167 ~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~------------~~Li~~y~~~g~~~~A~~~f 232 (749)
+. .| +...+..+-.++.+.|++++|...+...++...... ...+ ..+...+.+.|++++|...|
T Consensus 297 ~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 297 RA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 75 34 667788888999999999999999999988654322 1111 22345678999999999999
Q ss_pred ccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-chHHHHHHHHHccCChHHHHHHHHHHHHhcCC-
Q 004487 233 GEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQ-FPFSTLLSVVANKLDLQIGRQIHTQTIVTTAI- 307 (749)
Q Consensus 233 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~- 307 (749)
++... .+...+..+...+...|++++|++.|++..+.. |+. ..+..+...+ ..++.+.|..++..+......
T Consensus 375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 375 QQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLY-RQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHHHH
Confidence 98865 345577788899999999999999999998753 443 3444444444 345778888877665432110
Q ss_pred -------cchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCc-CH
Q 004487 308 -------SEVKVANSLVDMYAKCGRFEEAKEIFANLSHIS---TVPWTAMISAYVQKGNLEEALNLFIEMCRANISA-DQ 376 (749)
Q Consensus 308 -------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~ 376 (749)
.....+..+...+...|++++|.+.|++..+.+ ...+..+...|.+.|++++|...|++..+. .| +.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~ 529 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDP 529 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCH
Confidence 012245567788889999999999999986533 334677888999999999999999998874 34 33
Q ss_pred HhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchh---------HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHH
Q 004487 377 ATFASILRASAELASLSLGKQLHSFVIRSGFMSNVF---------SGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNA 447 (749)
Q Consensus 377 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 447 (749)
..+..+...+...++.++|...+..+......++.. ....+.+.+...|+.++|.++++.- ..+...+..
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~ 608 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ-PPSTRIDLT 608 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-CCCchHHHH
Confidence 333334445677899999999888765433222221 2234567788999999999999943 345567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHH
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCR 525 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 525 (749)
+...+.+.|++++|++.|++..+. .|+ ...+..+...+...|+.++|++.++...+ ..| +...+..+..++..
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHh
Confidence 889999999999999999999984 554 56888999999999999999999998763 344 35566778889999
Q ss_pred cCCHHHHHHHHHhC-CCCC-------CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 004487 526 SGCFDEAEKLMAQM-PFEP-------DEIMWSSVINSCRIHKNLEFAKKAADQLFKME 575 (749)
Q Consensus 526 ~g~~~~A~~~~~~~-~~~p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 575 (749)
.|++++|.++++++ ...| +...+..+...+...|+.++|+..+++++...
T Consensus 684 ~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 99999999999997 2222 22456666788899999999999999998644
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-19 Score=201.24 Aligned_cols=561 Identities=9% Similarity=-0.008 Sum_probs=378.5
Q ss_pred HcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHH
Q 004487 17 VKSGNLATARELFNSMVD--R-TAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELI 93 (749)
Q Consensus 17 ~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 93 (749)
...|++++|...|++..+ | +...+..|...|.+.|+.++|+..+++..+. .|+...|..++..+ ++...|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l---dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR---HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHHHHh---ccChhHH
Confidence 345999999999998854 3 4567899999999999999999999998864 45555555555433 8888999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHH--------hHcCCChhHHHHHHccCCCC--CcchHHHH-HHHHHhCCChhHHHHHH
Q 004487 94 QVHADIIKFGYNSILIICNSLVDS--------YCKIRCLDLARRVFKEMPQK--DSVSFNAL-ITGFAKEGLNEEAIKLF 162 (749)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~--~~~~~~~l-i~~~~~~g~~~~A~~l~ 162 (749)
.+++++++.... +..++..+... |.+.+....+++ . +...+ +....... ...|.+.|++++|++++
T Consensus 129 ~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-l-r~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 129 TTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN-D-ATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH-H-hhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999998643 34455555554 888777777777 3 33333 34444444 89999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhC-CCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC----
Q 004487 163 VEMQHLGFKPSDFTFAAALSAGVG-LADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE---- 237 (749)
Q Consensus 163 ~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---- 237 (749)
.++.+.+... ..-...+-.++.. .++ +.+..++.. .+..+..+...+.+.|.+.|+.++|.+++++++.
T Consensus 206 ~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 206 NEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 9999986332 3334455556665 355 666666332 3446888899999999999999999999998864
Q ss_pred -CCcchHHH------------------------------HHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 004487 238 -VDGVSYNV------------------------------MITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVA 286 (749)
Q Consensus 238 -~~~~~~~~------------------------------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 286 (749)
++..+|-- .+..+.+.++++.+.++.. ..|.... ..+....
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~~~ 351 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--LEERYAV 351 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--HHHHHhh
Confidence 22222221 1344555566654444311 3333332 2222222
Q ss_pred --ccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc---c-cHHHHHHHHHhCCC--
Q 004487 287 --NKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSH--IST---V-PWTAMISAYVQKGN-- 356 (749)
Q Consensus 287 --~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~-~~~~li~~~~~~g~-- 356 (749)
..+...++.+.+..+.+.. +.+....--+.-...+.|+.++|..+|+.... .+. . .-+-++..|.+.+.
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred ccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 2244555555555555442 22333334444456678888888888887654 111 1 13356667776655
Q ss_pred -hhHHHHH------------HH----------HHHH-CCCCc---CHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCC
Q 004487 357 -LEEALNL------------FI----------EMCR-ANISA---DQATFASILRASAELASLSLGKQLHSFVIRSGFMS 409 (749)
Q Consensus 357 -~~~A~~l------------~~----------~m~~-~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (749)
..+|+.+ .. .... .+..| +...+..+-.++.. +..++|...+....... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence 3444333 11 1111 11222 34444444444444 67777888666655543 4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 004487 410 NVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSA 486 (749)
Q Consensus 410 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a 486 (749)
+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|.+.+++..+. .|+.. .+..+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 433333445555688999999999987653 44556667777788889999999999988874 35443 33334445
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHH
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFA 564 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 564 (749)
....|++++|...++...+ +.|+...+..+..++.+.|++++|.+.+++. ...|+ ...+..+..++...|+.++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5566999999999988874 4677888888888999999999999998887 55664 66777777788889999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 565 KKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
+..++++++..| .++..+..++.+|...|++++|...+++..+..
T Consensus 663 i~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 663 REMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999 888999999999999999999999888886543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-18 Score=194.35 Aligned_cols=579 Identities=9% Similarity=0.003 Sum_probs=390.4
Q ss_pred cchhHHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhc
Q 004487 6 TVSTNMLISGYVKSGNLATARELFNSMVD--RTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGC 83 (749)
Q Consensus 6 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~ 83 (749)
+.++..|...|.+.|+.++|+..+++..+ |+-..|..++..+ +++++|..+|+++... .+-+..++..+....
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~--~P~n~~~~~~la~~~ 152 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQ--QKACDAVPTLRCRSE 152 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHh--CCCChhHHHHHHHHh
Confidence 67788999999999999999999998855 3333444434333 8888999999998865 222333333333330
Q ss_pred -----CCCCChHHHHHHHHHHHHhCCCCchhHHHHH-HHHhHcCCChhHHHHHHccCCCC---CcchHHHHHHHHHhC-C
Q 004487 84 -----SEPDTANELIQVHADIIKFGYNSILIICNSL-VDSYCKIRCLDLARRVFKEMPQK---DSVSFNALITGFAKE-G 153 (749)
Q Consensus 84 -----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~-g 153 (749)
.+..+.+.+.+..+ .......|+..+.... ...|.+.|++++|.+++.++.+. +..-+..|-.+|.+. +
T Consensus 153 ~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~ 231 (987)
T PRK09782 153 VGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQL 231 (987)
T ss_pred hccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhC
Confidence 11222345555554 3333334444444444 77777777777777777776643 222244455556552 5
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCC-CC------------------------
Q 004487 154 LNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFV-EN------------------------ 208 (749)
Q Consensus 154 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~------------------------ 208 (749)
+ +++..+++. .++-|......+...+.+.|+.+.|.+++..+...-.. |+
T Consensus 232 ~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~ 306 (987)
T PRK09782 232 D-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV 306 (987)
T ss_pred H-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhh
Confidence 5 556555442 22345566666667777777777776666544321100 00
Q ss_pred ------hhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCcchHHH
Q 004487 209 ------VFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMIT--CYAWNEQYKESLKLFRELQFTRFDRSQFPFST 280 (749)
Q Consensus 209 ------~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 280 (749)
....-.+++.+.+.+.++.+.++.+.-+. +. . ..+. +....+...++...+..|.+... -+....--
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q 381 (987)
T PRK09782 307 QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA-NE-M--LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQ 381 (987)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc-ch-H--HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHH
Confidence 11223447778888888888877553332 22 1 2222 22344667777777777755411 12222222
Q ss_pred HHHHHHccCChHHHHHHHHHHHHh-c-CCcchhHHHHHHHHHHhcCCHH---HHHHH-----------------------
Q 004487 281 LLSVVANKLDLQIGRQIHTQTIVT-T-AISEVKVANSLVDMYAKCGRFE---EAKEI----------------------- 332 (749)
Q Consensus 281 ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~~~---~A~~~----------------------- 332 (749)
+--.....|+.+.|.+++...... + -..+..+..-|+..|.+.+.+. ++..+
T Consensus 382 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (987)
T PRK09782 382 LTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNC 461 (987)
T ss_pred HHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhH
Confidence 222345678889999998888773 2 2234556667888888876632 22222
Q ss_pred --HHhcCC---C--CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHh
Q 004487 333 --FANLSH---I--STVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRS 405 (749)
Q Consensus 333 --~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 405 (749)
+..... . +...|..+..++.. ++.++|+..+.+.... .|+......+..++...|+++.|...+..+...
T Consensus 462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~ 538 (987)
T PRK09782 462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH 538 (987)
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 111111 1 33446777777766 8899999988887764 477655445555667899999999999887554
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004487 406 GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALIS---ACAQNGDAQATLKSFEDMVQSGYQPDSVSLLS 482 (749)
Q Consensus 406 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 482 (749)
+|+......+...+.+.|+.++|.+.|+...+.++..++.... .....|++++|+..+++..+ ..|+...+..
T Consensus 539 --~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~ 614 (987)
T PRK09782 539 --DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVA 614 (987)
T ss_pred --CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 3344445677788899999999999999887544433433333 33345999999999999998 6788888999
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcC
Q 004487 483 VLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHK 559 (749)
Q Consensus 483 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 559 (749)
+..++.+.|+.++|...++.... +.| +...+..+...+...|++++|++.+++. ...| +...+..+..++...|
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999884 456 4667888888999999999999999988 5556 4788999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 004487 560 NLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 560 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
++++|+..++++++++| .+.......+++..+..+++.|.+-++..-.-.+
T Consensus 692 d~~eA~~~l~~Al~l~P-~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 692 DMAATQHYARLVIDDID-NQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred CHHHHHHHHHHHHhcCC-CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999 9999999999999999999999998877655444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-18 Score=173.12 Aligned_cols=448 Identities=10% Similarity=0.102 Sum_probs=349.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc
Q 004487 142 FNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSK 221 (749)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 221 (749)
-..|..-..+.|++++|.+.-...-+.. ..+..+...+-..+.+..+++...+--...++.. +.-..+|+.+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445555667888888887665443332 1122222222223334444444333322233222 2245678888999999
Q ss_pred CCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHH-HHHccCChHHHHHH
Q 004487 222 HDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLS-VVANKLDLQIGRQI 297 (749)
Q Consensus 222 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~~~~~~a~~~ 297 (749)
.|++++|..+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+.+...+-+. .....|.+++|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999988876 3567899999999999999999999988766 3565544333222 33456888888888
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCc
Q 004487 298 HTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHIST---VPWTAMISAYVQKGNLEEALNLFIEMCRANISA 374 (749)
Q Consensus 298 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 374 (749)
+..+++... .=..+|+.|...+...|+...|..-|++....|+ ..|-.|-..|...+.+++|+..|.+... ..|
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrp 283 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRP 283 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCC
Confidence 888877642 2345788899999999999999999999876544 3377888899999999999999988765 466
Q ss_pred C-HHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHH
Q 004487 375 D-QATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALIS 450 (749)
Q Consensus 375 ~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 450 (749)
+ .+.+..+...|...|.++.|..-+++.++... .-+..|+.|..++-..|++.+|.+.+.+... ....+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4 46777777788999999999999998887642 2356799999999999999999999998773 34567888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCC
Q 004487 451 ACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGC 528 (749)
Q Consensus 451 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 528 (749)
.|...|.+++|..+|....+ +.|.-. .++.|...|-+.|++++|+..+++.. .|.|+ ...|+.|...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999998 778754 89999999999999999999999887 68897 4789999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 004487 529 FDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVK 603 (749)
Q Consensus 529 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 603 (749)
.+.|.+.+.+. .+.|. ....+.|...+...|++.+|++.|+.++++.| +.+.+|-.++.+..-..+|.+-.+.+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP-DfpdA~cNllh~lq~vcdw~D~d~~~ 513 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP-DFPDAYCNLLHCLQIVCDWTDYDKRM 513 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC-CCchhhhHHHHHHHHHhcccchHHHH
Confidence 99999999888 77886 77899999999999999999999999999999 99999999999888888887743333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=176.89 Aligned_cols=290 Identities=9% Similarity=0.123 Sum_probs=218.9
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcC---HHhHHHHHHHhcccCcH
Q 004487 319 MYAKCGRFEEAKEIFANLSHIS---TVPWTAMISAYVQKGNLEEALNLFIEMCRANISAD---QATFASILRASAELASL 392 (749)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~ 392 (749)
.+...|++++|...|+++.+.+ ..+|..+...+...|++++|..+++.+...+..++ ..++..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3456677777777777765432 23466666777777777777777777766432221 23455666667777777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--------cchHHHHHHHHHhcCCHHHHHHH
Q 004487 393 SLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERN--------IVSWNALISACAQNGDAQATLKS 464 (749)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~ 464 (749)
+.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|.+.
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777776542 3456677788888888888888888888776321 11345677778889999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 004487 465 FEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK--KEHYASMVDILCRSGCFDEAEKLMAQM-P 540 (749)
Q Consensus 465 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 540 (749)
|+++.+. .|+ ..++..+...+.+.|++++|.++|+++... .|+ ...+..++.+|.+.|++++|.+.++++ .
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999884 344 457777888899999999999999998854 343 456788999999999999999999988 5
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH---cCCchhHHHHHHHHHhCCCccCCc
Q 004487 541 FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAV---AGQWESVSQVKKAMRERGVRKVTA 616 (749)
Q Consensus 541 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 616 (749)
..|+...+..+...+...|++++|...++++++..| +...+..+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P--~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHP--SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc--CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 567777778888899999999999999999999988 44566666666554 569999999999999999998887
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-17 Score=165.31 Aligned_cols=418 Identities=14% Similarity=0.162 Sum_probs=328.9
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCC
Q 004487 179 AALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQ 255 (749)
Q Consensus 179 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 255 (749)
.+..-..+.|++..|++--..+-... +.+....-.+-..+....+.+....--..... .-..+|+.+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444556678887776554443322 22222222333455555555554332222222 234578889999999999
Q ss_pred hhHHHHHHHHHHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHHhcCCHHHHHHHH
Q 004487 256 YKESLKLFRELQFTRFDRS-QFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEV-KVANSLVDMYAKCGRFEEAKEIF 333 (749)
Q Consensus 256 ~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~ 333 (749)
.++|+.+++.+.+. +|+ ...|..+-.++...|+.+.|.+.+...++.. |+. .+.+.+.......|++.+|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999875 443 4568888889999999999999999888753 433 33445666667789999999988
Q ss_pred HhcCC--CC-cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcC-HHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCC
Q 004487 334 ANLSH--IS-TVPWTAMISAYVQKGNLEEALNLFIEMCRANISAD-QATFASILRASAELASLSLGKQLHSFVIRSGFMS 409 (749)
Q Consensus 334 ~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (749)
.+..+ +. .+.|+.|-..+-..|+...|+..|++... +.|+ ...|..+-..+...+.++.|...+....... +.
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 77654 32 35599999999999999999999999876 4565 3567777778888888888887776665543 23
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 004487 410 NVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RN-IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLS 485 (749)
Q Consensus 410 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 485 (749)
...++..|...|...|.++-|...+++..+ |+ ...|+.|..++...|+..+|...|.+.+. +.|+.. +.+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 456677788889999999999999998874 44 56899999999999999999999999998 678765 8899999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHH
Q 004487 486 ACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLE 562 (749)
Q Consensus 486 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 562 (749)
.|...|.+++|..+|.... .+.|. ....+.|...|-..|++++|..-+++. .++|+ ...++.+...|...|+++
T Consensus 363 i~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999998877 45665 457889999999999999999999988 88897 789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 563 FAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 563 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
.|.+.+.+++...| .-..++..|+.+|-.+|+..+|..-++...+..
T Consensus 440 ~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 440 AAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999 889999999999999999999999999876543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-16 Score=174.24 Aligned_cols=418 Identities=11% Similarity=0.045 Sum_probs=262.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc
Q 004487 142 FNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSK 221 (749)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 221 (749)
+......+.+.|++++|+..|++... +.|+...|..+-.++...|+++.|...+..+++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44556677788888888888888765 45666666666666666777777776666666543 2234455556666666
Q ss_pred CCChHHHHHHHccCCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHH
Q 004487 222 HDCVVEARKLFGEMPEVD---GVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIH 298 (749)
Q Consensus 222 ~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 298 (749)
.|++++|...|......+ ......++..+.. ..+.....+.... .|
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~~------------------------- 255 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET--KP------------------------- 255 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc--CC-------------------------
Confidence 666666665553322111 0001111111000 1111111111111 01
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc---cHHHHHHH---HHhCCChhHHHHHHHHHHHCC-
Q 004487 299 TQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTV---PWTAMISA---YVQKGNLEEALNLFIEMCRAN- 371 (749)
Q Consensus 299 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~---~~~~g~~~~A~~l~~~m~~~g- 371 (749)
.+...+..+.. |......+.+..-+....+.+.. .+..+... ....+++++|++.|++....+
T Consensus 256 ---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 256 ---------ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred ---------CCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 01111111111 11111111111111111111111 11111111 122457778888888877654
Q ss_pred CCcC-HHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHH
Q 004487 372 ISAD-QATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNA 447 (749)
Q Consensus 372 ~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 447 (749)
..|+ ...+..+...+...|+++.|...+...++.. +.....+..+...|...|++++|...|++..+ .+...|..
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 404 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 2343 3455555566667788888888887777653 22355677788888899999999999987653 45678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRS 526 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 526 (749)
+...+...|++++|+..|++.++ +.|+ ...+..+..++...|++++|+..|+...+. .+.+...+..+..++...
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHc
Confidence 88999999999999999999988 4565 456777788899999999999999988753 233467888899999999
Q ss_pred CCHHHHHHHHHhC-CCCCCH-H-------hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCch
Q 004487 527 GCFDEAEKLMAQM-PFEPDE-I-------MWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWE 597 (749)
Q Consensus 527 g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 597 (749)
|++++|.+.|++. ...|+. . .++..+..+...|++++|+..++++++++| .+...+..++.+|...|+++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHH
Confidence 9999999999886 444431 1 122222233446999999999999999999 88889999999999999999
Q ss_pred hHHHHHHHHHhC
Q 004487 598 SVSQVKKAMRER 609 (749)
Q Consensus 598 ~a~~~~~~m~~~ 609 (749)
+|.+.+++..+.
T Consensus 560 eAi~~~e~A~~l 571 (615)
T TIGR00990 560 EALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-17 Score=173.06 Aligned_cols=289 Identities=15% Similarity=0.183 Sum_probs=197.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHhcCCc---chhHHHHHHHHHHhcC
Q 004487 249 CYAWNEQYKESLKLFRELQFTRFDRS-QFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAIS---EVKVANSLVDMYAKCG 324 (749)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g 324 (749)
.+...|++++|+..|.++...+ |+ ..++..+...+...|+++.|..+++.+++.+..+ ....+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3455666777777777766542 22 2234444444455555555555555444432111 1234555666666666
Q ss_pred CHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHH
Q 004487 325 RFEEAKEIFANLSH---ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSF 401 (749)
Q Consensus 325 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 401 (749)
++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..++...
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 66666666666543 2333456666666666666666666666654321111000
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 004487 402 VIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE--R-NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD-- 476 (749)
Q Consensus 402 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 476 (749)
....+..+...+.+.|++++|.+.|+++.+ | +...+..+...|.+.|++++|+++|+++.+. .|+
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 248 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYL 248 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhH
Confidence 012345677778889999999999988763 3 3557778889999999999999999999984 344
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHHHHHHHH
Q 004487 477 SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWSSVINSC 555 (749)
Q Consensus 477 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 555 (749)
..++..+..+|...|++++|.+.++.+.+. .|+...+..++..+.+.|++++|.++++++ ...|+...++.++..+
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence 356788899999999999999999998853 677777788999999999999999999877 6679999999888876
Q ss_pred Hh---cCCHHHHHHHHHHHhcCC
Q 004487 556 RI---HKNLEFAKKAADQLFKME 575 (749)
Q Consensus 556 ~~---~g~~~~a~~~~~~~~~~~ 575 (749)
.. +|+.+++...++++++..
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHH
Confidence 54 568889999999888644
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-14 Score=161.77 Aligned_cols=392 Identities=10% Similarity=0.028 Sum_probs=181.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcC
Q 004487 143 NALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKH 222 (749)
Q Consensus 143 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 222 (749)
.-.+......|+.++|++++.+..... ..+...+..+..++...++++.|.+++...++.. +.+......+...+.+.
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334455566777777777777766421 2233345555555556666666666666555442 22233344455555555
Q ss_pred CChHHHHHHHccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHH
Q 004487 223 DCVVEARKLFGEMPE--V-DGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHT 299 (749)
Q Consensus 223 g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 299 (749)
|+.++|...++...+ | +.. |..+...+...|+.++|+..+++...
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~------------------------------- 144 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP------------------------------- 144 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------
Confidence 555555555554432 1 222 44444455555555555555555443
Q ss_pred HHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc--------cHHHHHHHHH-----hCCCh---hHHHHH
Q 004487 300 QTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTV--------PWTAMISAYV-----QKGNL---EEALNL 363 (749)
Q Consensus 300 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~l 363 (749)
.. +.+..++..+..++.+.+..+.|.+.++.... ++. ....++..+. ..+++ ++|++.
T Consensus 145 ----~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 145 ----RA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred ----hC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 22 12333334455556666667777776665554 111 1111111111 11122 445555
Q ss_pred HHHHHHC-CCCcCHH-hHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 004487 364 FIEMCRA-NISADQA-TFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERN 441 (749)
Q Consensus 364 ~~~m~~~-g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 441 (749)
++.+... ...|+.. .+... ....+.++...|++++|.+.|+.+.+.+
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a-------------------------------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~ 267 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRA-------------------------------RIDRLGALLARDRYKDVISEYQRLKAEG 267 (765)
T ss_pred HHHHHhhcccCCccchHHHHH-------------------------------HHHHHHHHHHhhhHHHHHHHHHHhhccC
Confidence 5555432 1122111 10000 0000112223345555555555544211
Q ss_pred --cch--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----
Q 004487 442 --IVS--WNALISACAQNGDAQATLKSFEDMVQSGYQPD-----SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYK---- 508 (749)
Q Consensus 442 --~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~---- 508 (749)
... -..+...|...|++++|+..|+++.+.. |. ......+..++...|++++|.++++.+.....
T Consensus 268 ~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~ 345 (765)
T PRK10049 268 QIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR 345 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe
Confidence 010 1112334455555555555555544321 11 12233334444555555555555555443210
Q ss_pred ------CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 004487 509 ------LRPK---KEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKL 577 (749)
Q Consensus 509 ------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 577 (749)
-.|+ ...+..+..++...|++++|++.++++ ...| +...+..+...+...|+.++|+..+++++++.|
T Consensus 346 ~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P- 424 (765)
T PRK10049 346 LYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP- 424 (765)
T ss_pred ecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-
Confidence 0111 122334455555556666666665554 2223 344555555555556666666666666666665
Q ss_pred CCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 578 RDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 578 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
.+...+..++..+...|+|++|..+++.+.+
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555555556666666666665555543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-14 Score=148.67 Aligned_cols=538 Identities=14% Similarity=0.119 Sum_probs=345.8
Q ss_pred hhHHHHHHHHhHhcCCCCCCcchHHHHHHhc--CCCCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHhHcCCChhHHH
Q 004487 53 FREAFKLFVDMRTDGGSDPDYVTFATLLSGC--SEPDTANELIQVHADIIKFGY--NSILIICNSLVDSYCKIRCLDLAR 128 (749)
Q Consensus 53 ~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~ 128 (749)
.+.|...|....+. .++|.-.+ +.+|| -..+++..|..+|..++.... .||+.+. +-..+.++|+.+.|.
T Consensus 146 ~~~A~a~F~~Vl~~--sp~Nil~L--lGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ--SPDNILAL--LGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhh--CCcchHHH--HHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHH
Confidence 46777777777654 34443333 33443 355688888888888766543 4555432 224556788888888
Q ss_pred HHHccCCCCCcchHHHHHHHHH------hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHH
Q 004487 129 RVFKEMPQKDSVSFNALITGFA------KEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVK 202 (749)
Q Consensus 129 ~~~~~m~~~~~~~~~~li~~~~------~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 202 (749)
..|.+..+-|...-++++.... ....+..++.++...-... .-++...+.|..-+.-.++...+..+...+.+
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 8888877765554454443221 1123345555555443321 23556667777777888888888888887776
Q ss_pred cCCCC--ChhHHHHHHHHHHcCCChHHHHHHHccCCC--CC--cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-
Q 004487 203 TNFVE--NVFVANALLDLYSKHDCVVEARKLFGEMPE--VD--GVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQ- 275 (749)
Q Consensus 203 ~g~~~--~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~- 275 (749)
..... -...|--+..+|-..|++++|...|..... +| +..+--+...|.+.|+.+.+...|+..... .||.
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~ 376 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNY 376 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchH
Confidence 54221 223456677888888888888888876654 22 334455677888888888888888887654 3443
Q ss_pred chHHHHHHHHHccC----ChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHH------HHHHHHHhcC-CCCcccH
Q 004487 276 FPFSTLLSVVANKL----DLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFE------EAKEIFANLS-HISTVPW 344 (749)
Q Consensus 276 ~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~-~~~~~~~ 344 (749)
.|...+-..++..+ ..+.|..+.....+.. +.|...|-.+..+|-...-+. .|..++..-. ...+...
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 34444444444443 3455555555555443 456667777766666544332 2333332222 2233337
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHC---CCCcCH-----HhHH-HHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHH
Q 004487 345 TAMISAYVQKGNLEEALNLFIEMCRA---NISADQ-----ATFA-SILRASAELASLSLGKQLHSFVIRSGFMSNVFSGS 415 (749)
Q Consensus 345 ~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~-----~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (749)
|.+..-+...|++++|...|...... ...+|. .|.. .+-...-..++.+.|.+.+..+.+.. -
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--------p 527 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--------P 527 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--------c
Confidence 88888888888898888888887654 123333 2222 23334455668888888888887753 1
Q ss_pred HHHHHHHhc-------CCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH
Q 004487 416 ALLDMYAKS-------GSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSG-YQPDSVSLLSVL 484 (749)
Q Consensus 416 ~li~~y~~~-------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll 484 (749)
..|++|.+. +...+|...+.... ..++..|+-+...+.....+..|.+-|+...+.- ..+|..+..+|.
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 234444443 56677888877765 4567777777778888888888888776665532 236777777777
Q ss_pred HHHhc------------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHhHHH
Q 004487 485 SACSH------------CGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSS 550 (749)
Q Consensus 485 ~a~~~------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 550 (749)
+.|.. .+..++|+++|....+. -+.+...-+-+.-.++..|++.+|.++|.+. ....+..+|-.
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lN 685 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLN 685 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeee
Confidence 76543 34567788887777642 2335556666777788899999999998887 22234568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcC-CCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKM-EKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
+...|...|++..|+++|+..++. .+..++.....|+.++.+.|+|.+|.+.........
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 888999999999999999888764 344677888889999999999999988887766543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.4e-14 Score=147.97 Aligned_cols=574 Identities=11% Similarity=0.062 Sum_probs=389.5
Q ss_pred hHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHhHhc-CCCCCCcchHHHHHHhcCCCCChHHHHHHHH
Q 004487 22 LATARELFNSMVD--R-TAVSWTILIGGYSQKNQFREAFKLFVDMRTD-GGSDPDYVTFATLLSGCSEPDTANELIQVHA 97 (749)
Q Consensus 22 ~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 97 (749)
++.|...|..... | |+-..-.-.......+++..|+.+|...... +..+||+..- +-.++.+.++.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHH
Confidence 5889999988744 3 3433333334445778999999999995432 2456666432 1234567888999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHh---HcC---CChhHHHHHHccCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004487 98 DIIKFGYNSILIICNSLVDSY---CKI---RCLDLARRVFKEMP---QKDSVSFNALITGFAKEGLNEEAIKLFVEMQHL 168 (749)
Q Consensus 98 ~~~~~g~~~~~~~~~~li~~~---~~~---g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 168 (749)
..++..+ ...++++... ... ..+..+..++...- ..|++..+.|..-|...|++..+..+...+...
T Consensus 224 ralqLdp----~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 224 RALQLDP----TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHhcCh----hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 8887653 3333333222 112 23445555554432 257888999999999999999999999988765
Q ss_pred CCC--CChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCC---CcchH
Q 004487 169 GFK--PSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEV---DGVSY 243 (749)
Q Consensus 169 g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~ 243 (749)
... .-...|-.+-+++-..|+++.|.+.+....+.....-+..+-.|..+|.+.|+++.+...|+.+... +..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 311 1234577888999999999999999988887654333455567899999999999999999998763 33455
Q ss_pred HHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHH----HHHHhcCCcchhHHHH
Q 004487 244 NVMITCYAWNE----QYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHT----QTIVTTAISEVKVANS 315 (749)
Q Consensus 244 ~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~----~~~~~g~~~~~~~~~~ 315 (749)
..+...|+..+ ..+.|..++.+....- ..|...|..+-..+.. ++.......+. .+...+..+.+.+.|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 55556666664 3455666665554432 2334445444444433 33333344444 4445666788999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-------CCcc------c-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHh-HH
Q 004487 316 LVDMYAKCGRFEEAKEIFANLSH-------ISTV------P-WTAMISAYVQKGNLEEALNLFIEMCRANISADQAT-FA 380 (749)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~-------~~~~------~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~ 380 (749)
+...+...|++..|...|+.... ++.. . || +...+-..++++.|.+.|...... .|+-+. |.
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHH
Confidence 99999999999999999987642 2221 1 33 344556677899999999998875 455443 32
Q ss_pred HHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCcchHHHHHHHHHh-
Q 004487 381 SILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP-----ERNIVSWNALISACAQ- 454 (749)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~- 454 (749)
-++......+...++...+..+.... ..++.+.+.+.+.|.+...+..|.+-|+.+. .+|+.+.-+|.+.|.+
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 33222223456777777777766543 3456666667778888888888888666554 2344444444443332
Q ss_pred -----------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 004487 455 -----------NGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDIL 523 (749)
Q Consensus 455 -----------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 523 (749)
.+..++|+++|.+.+... +-|...-+.+.-.++..|++.+|..+|.+..+. ......+|-.+.+.|
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCY 690 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHH
Confidence 245778999999888842 335567777777889999999999999988865 233455678888999
Q ss_pred HHcCCHHHHHHHHHhC----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH---------
Q 004487 524 CRSGCFDEAEKLMAQM----PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIY--------- 590 (749)
Q Consensus 524 ~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--------- 590 (749)
..+|++..|++.|+.. .-+.+..+.+.|..++...|.+.+|...+..+..+.| .|+..-..++-..
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p-~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP-SNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ccchHHhHHHHHHHHHHHHHHh
Confidence 9999999999999876 2234678888999999999999999999999999999 6666554444333
Q ss_pred ----------HHcCCchhHHHHHHHHHhCCC
Q 004487 591 ----------AVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 591 ----------~~~g~~~~a~~~~~~m~~~g~ 611 (749)
...+..+.|.++|..|.+.+-
T Consensus 770 ~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 770 LEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 233445667777777766544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.2e-15 Score=163.08 Aligned_cols=347 Identities=11% Similarity=0.074 Sum_probs=254.1
Q ss_pred cCCChHHHHHHHccCCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHH
Q 004487 221 KHDCVVEARKLFGEMPE------VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIG 294 (749)
Q Consensus 221 ~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 294 (749)
+..+++.---.|..-++ .+....-.++..+.+.|++++|+.+++........+.... ..+..+....|+.+.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l-~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLL-RRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHH-HHHhhhHhhcCCHHHH
Confidence 33444444444444443 1223345566777888888888888888877654443333 3334555568888888
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 004487 295 RQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSH---ISTVPWTAMISAYVQKGNLEEALNLFIEMCRAN 371 (749)
Q Consensus 295 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 371 (749)
...++.++... +.+...+..+...+.+.|++++|...|++... .+...|..+...+.+.|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 88888887764 34556777888889999999999999988764 334458888888999999999999998886643
Q ss_pred CCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHH
Q 004487 372 ISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNAL 448 (749)
Q Consensus 372 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 448 (749)
..+ ...+.. +..+...|++++|...+..+.+....++......+...+.+.|+.++|...|++..+ .+...+..+
T Consensus 175 P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PPR-GDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCC-HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 222 222222 334677899999999888877765444444555667788899999999999988763 356677888
Q ss_pred HHHHHhcCCHHH----HHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 004487 449 ISACAQNGDAQA----TLKSFEDMVQSGYQPDS-VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDI 522 (749)
Q Consensus 449 i~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 522 (749)
...+.+.|++++ |+..|++..+ ..|+. ..+..+...+...|++++|...++..... .|+ ...+..+..+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 888999999885 7999999988 45654 47888888899999999999999988753 454 4566778889
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCCHHhHH-HHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 523 LCRSGCFDEAEKLMAQM-PFEPDEIMWS-SVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 523 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
|.+.|++++|.+.++++ ...|+...+. .+..++...|+.++|...++++++..|
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 99999999999999887 4566654443 345678889999999999999999988
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-14 Score=157.57 Aligned_cols=442 Identities=12% Similarity=0.065 Sum_probs=264.8
Q ss_pred HHHHHHHhHcCCChhHHHHHHccCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhCC
Q 004487 111 CNSLVDSYCKIRCLDLARRVFKEMPQ--KDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPS-DFTFAAALSAGVGL 187 (749)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 187 (749)
+...-..|.+.|+++.|...|++... |+...|..+..+|.+.|++++|++.++..++. .|+ ...+..+-.++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 34555677788999999999988654 67777888888899999999999999988774 443 45677788888889
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 004487 188 ADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQ 267 (749)
Q Consensus 188 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 267 (749)
|+++.|..-+..+.......+... ..++.-+.+......+...++.-+ .+..++..+.. |........+..-+.+-.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 999988877766554432222221 112221111112334444444332 23334443322 222222222221111110
Q ss_pred HCCCCCCcc-hHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------C
Q 004487 268 FTRFDRSQF-PFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHI------S 340 (749)
Q Consensus 268 ~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 340 (749)
. ..|... .+..+..... -....+++++|.+.|+...+. .
T Consensus 285 ~--~~~~~~~~~~~l~~~~~--------------------------------e~~~~~~y~~A~~~~~~al~~~~~~~~~ 330 (615)
T TIGR00990 285 E--LDEETGNGQLQLGLKSP--------------------------------ESKADESYEEAARAFEKALDLGKLGEKE 330 (615)
T ss_pred c--cccccccchHHHHHHHH--------------------------------HhhhhhhHHHHHHHHHHHHhcCCCChhh
Confidence 0 011100 0000000000 001123444555555444321 1
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcC-HHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004487 341 TVPWTAMISAYVQKGNLEEALNLFIEMCRANISAD-QATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLD 419 (749)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 419 (749)
...|+.+...+...|++++|+..|++.... .|+ ...|..+...+...|+++.|...+..+++.. +.+..++..+..
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~ 407 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQ 407 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 122444555555566666666666555543 333 3344455555555666666666665555543 234566777788
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 004487 420 MYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEE 495 (749)
Q Consensus 420 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 495 (749)
.|...|++++|...|++..+ .+...|..+...+.+.|++++|+..|++... ..|+ ...+..+..++...|++++
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHH
Confidence 88888888888888887763 3456677788888899999999999999887 3454 5577888888999999999
Q ss_pred HHHHHHHhHHhcCCCCCh-H-------HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHH
Q 004487 496 GLQYFNSMTQKYKLRPKK-E-------HYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAK 565 (749)
Q Consensus 496 a~~~~~~m~~~~~~~p~~-~-------~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 565 (749)
|+..|+.... +.|+. . .++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|.
T Consensus 486 A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 486 AIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 9999988764 34431 1 1122223344579999999999886 55565 557888999999999999999
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 566 KAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
..++++.++.+ ..... .....|.+|.++....++
T Consensus 563 ~~~e~A~~l~~-~~~e~--------~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 563 KLFERAAELAR-TEGEL--------VQAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHhc-cHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 99999999877 32221 123345556666554443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.5e-14 Score=134.32 Aligned_cols=443 Identities=15% Similarity=0.141 Sum_probs=276.3
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcC--CCCChH-HHHHHHHHHHHhCCCCchhHHHHH
Q 004487 38 VSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCS--EPDTAN-ELIQVHADIIKFGYNSILIICNSL 114 (749)
Q Consensus 38 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~--~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~l 114 (749)
++=|.|+.. ..+|...++.-+|+.|+.. |++.+...-..|++..+ ....+- .-++-|-.|.+.|-.. ..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW--- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW--- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc---
Confidence 345555543 4577888888899999988 77777665555544322 222222 1223344444444322 2222
Q ss_pred HHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHH
Q 004487 115 VDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGR 194 (749)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 194 (749)
+.|++.+ -+|+..| +...++..||.++++--..+.|.++|++-.....+.+..+||.+|.+.+- ..++
T Consensus 191 -----K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 3454433 4555555 45678999999999999999999999999998899999999999987653 3448
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004487 195 QVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRS 274 (749)
Q Consensus 195 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 274 (749)
.+..+|+.....||..|+|+++...++.|+++.|++. |++++.+|++-|+.|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePs 311 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPS 311 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcc
Confidence 8999999999999999999999999999999988755 3555566666666666
Q ss_pred cchHHHHHHHHHccCChHH-HHHHHHHHHH----hcCCc----chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------
Q 004487 275 QFPFSTLLSVVANKLDLQI-GRQIHTQTIV----TTAIS----EVKVANSLVDMYAKCGRFEEAKEIFANLSHI------ 339 (749)
Q Consensus 275 ~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------ 339 (749)
..+|..+|..+.+.++... +..+...+.. ..+.| |...+...++.+.+..+.+-|.++-.-....
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 6666666665555554432 2222222222 11211 3334444555555555555555554433321
Q ss_pred --C---cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHH
Q 004487 340 --S---TVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSG 414 (749)
Q Consensus 340 --~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (749)
+ ..-|..+....++....+.-+..|+.|.-.-+-|+..+...+++|....+.++...+++..++..|........
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 1 11156677778888888999999999988888899999999999999999999999999988887754433333
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhc-CCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 004487 415 SALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQN-GDAQA-TLKSFEDMVQSGYQPDSVSLLSVLSACSHCGL 492 (749)
Q Consensus 415 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 492 (749)
--++..+++.. +.|+...-..+-.+.++. -++.+ ....-.+|.+....|. ..+.++-.+.+.|.
T Consensus 472 eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~ 537 (625)
T KOG4422|consen 472 EEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGR 537 (625)
T ss_pred HHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcch
Confidence 22222222211 122222111111111110 01111 1222334555444443 34444445678888
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHH---HHHHHHHcCCHHHHHHHHHhC
Q 004487 493 IEEGLQYFNSMTQKYKLRPKKEHYAS---MVDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 493 ~~~a~~~~~~m~~~~~~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~~ 539 (749)
.++|.++|..+.++.+-.|.....++ +++.-.+....-.|...++-|
T Consensus 538 ~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 538 TQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888888877655554555444554 445556667777777777766
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-14 Score=161.57 Aligned_cols=363 Identities=12% Similarity=0.075 Sum_probs=217.9
Q ss_pred HHHHHHcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cchHHHHHHHHHccCC
Q 004487 215 LLDLYSKHDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRS-QFPFSTLLSVVANKLD 290 (749)
Q Consensus 215 Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~ 290 (749)
.+......|+.++|.+++.+... .+...+..+...+.+.|++++|..++++.... .|+ ......+...+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 33344444555555555544432 12223445555555555555555555554432 222 1222233333444444
Q ss_pred hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCChhHHHHHHHHH
Q 004487 291 LQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHI---STVPWTAMISAYVQKGNLEEALNLFIEM 367 (749)
Q Consensus 291 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 367 (749)
.+.|...++.+++.. +.+.. +..+..++...|+.++|...++++.+. +...+..+...+...+..++|++.++..
T Consensus 99 ~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 99 YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 444444444444441 22333 566677777788888888888776542 2233555666777777778787777654
Q ss_pred HHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHhhCCC-----
Q 004487 368 CRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSL---KDAIQTFKEMPE----- 439 (749)
Q Consensus 368 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~----- 439 (749)
.. .|+.... + ....+. ...+ ..+.......+++ ++|.+.++.+.+
T Consensus 177 ~~---~p~~~~~---l-------~~~~~~----~~~r----------~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 177 NL---TPAEKRD---L-------EADAAA----ELVR----------LSFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred CC---CHHHHHH---H-------HHHHHH----HHHH----------hhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 32 3331000 0 000000 0000 0000111122223 566666665551
Q ss_pred CCcc-hH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC--
Q 004487 440 RNIV-SW----NALISACAQNGDAQATLKSFEDMVQSGYQ-PDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-- 511 (749)
Q Consensus 440 ~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-- 511 (749)
|+.. .+ ...+.++...|++++|+..|+++.+.+.+ |+.. ...+..+|...|++++|+.+|+.+.+.....+
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 2211 11 11133456779999999999999987532 4432 22356689999999999999999875321111
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-------------C---HHhHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 004487 512 KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-------------D---EIMWSSVINSCRIHKNLEFAKKAADQLFKM 574 (749)
Q Consensus 512 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-------------~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 574 (749)
.......+..++...|++++|.++++++ ...| + ...+..+...+...|+.++|+..++++.+.
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1355677778899999999999999988 2223 2 224455667788999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 575 EKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 575 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
.| .+...+..++.++...|+.++|.+.+++..+..
T Consensus 389 ~P-~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 389 AP-GNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 99 999999999999999999999999999987754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-14 Score=157.78 Aligned_cols=324 Identities=12% Similarity=0.031 Sum_probs=261.9
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHH
Q 004487 276 FPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHI---STVPWTAMISAYV 352 (749)
Q Consensus 276 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~ 352 (749)
.-...++..+.+.|+.+.|..++..++.....+.... ..++......|+.++|...|+.+... +...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l-~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLL-RRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHH-HHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3455677788899999999999999988865554444 44556667799999999999998643 3445888889999
Q ss_pred hCCChhHHHHHHHHHHHCCCCc-CHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004487 353 QKGNLEEALNLFIEMCRANISA-DQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAI 431 (749)
Q Consensus 353 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 431 (749)
+.|++++|+..|++.... .| +...+..+...+...|+.+.|...+..+......+.. .+..+ ..+.+.|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHH
Confidence 999999999999999874 45 4567778888899999999999999887766543333 33333 3478899999999
Q ss_pred HHHhhCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH----HHHHHHH
Q 004487 432 QTFKEMPER----NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEE----GLQYFNS 502 (749)
Q Consensus 432 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~~~ 502 (749)
..++.+.+. +...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++ |...|+.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999987642 2334455567888999999999999999984 454 4577788889999999986 8999998
Q ss_pred hHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 004487 503 MTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRD 579 (749)
Q Consensus 503 m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 579 (749)
..+ +.| +...+..+...+.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++.+..| .+
T Consensus 276 Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~ 351 (656)
T PRK15174 276 ALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-VT 351 (656)
T ss_pred HHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cc
Confidence 884 355 4678889999999999999999999988 55564 66778888899999999999999999999999 77
Q ss_pred chhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 580 AAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 580 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
...+..++.++...|++++|...++...+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 6667778899999999999999999987654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-13 Score=151.47 Aligned_cols=426 Identities=11% Similarity=0.084 Sum_probs=206.6
Q ss_pred hHcCCChhHHHHHHccCCCCCcc---hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH---HHHHHHhCCCChH
Q 004487 118 YCKIRCLDLARRVFKEMPQKDSV---SFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFA---AALSAGVGLADIA 191 (749)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~~~~~ 191 (749)
.++.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+. .+...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 45666666666666666542222 12256666666666666666666655 23222221 1223444455555
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHh--cCChhHHHHHHHHHHHC
Q 004487 192 LGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAW--NEQYKESLKLFRELQFT 269 (749)
Q Consensus 192 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 269 (749)
.|.++++.+++.... +..++..|+..|...++.++|.+.++.+...+......+..+|.. .++..+|++.++++
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl--- 195 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA--- 195 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH---
Confidence 555555555554322 233334445555555555555555555444222211112222222 22232344444444
Q ss_pred CCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc---HHH
Q 004487 270 RFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVP---WTA 346 (749)
Q Consensus 270 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ 346 (749)
++.. +.+...+..++....+.|-...|.++.++-+. ..+ +.-
T Consensus 196 --------------------------------l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~ 240 (822)
T PRK14574 196 --------------------------------VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQ 240 (822)
T ss_pred --------------------------------HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHH
Confidence 3332 44566777888888888888888887776542 222 111
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCc---HHHHHHHHHHHHHh-CCCCc-hhH-HHH---H
Q 004487 347 MISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELAS---LSLGKQLHSFVIRS-GFMSN-VFS-GSA---L 417 (749)
Q Consensus 347 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~-~~~~~-~~~-~~~---l 417 (749)
+ .. +.|-+ +++.+..|+. ....+ .+.+..-++.+... +-.|. ... ..+ .
T Consensus 241 l-~~-------~~~a~----~vr~a~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Dr 298 (822)
T PRK14574 241 L-ER-------DAAAE----QVRMAVLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDR 298 (822)
T ss_pred H-HH-------HHHHH----HHhhcccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHH
Confidence 1 00 00000 0000000000 00001 12222222222221 11111 011 111 2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCC--cc--hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHh
Q 004487 418 LDMYAKSGSLKDAIQTFKEMPERN--IV--SWNALISACAQNGDAQATLKSFEDMVQSG-----YQPDSVSLLSVLSACS 488 (749)
Q Consensus 418 i~~y~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~ 488 (749)
+-++.+.|+..++.+.|+.+..+. +. +-.++.++|...+++++|+.+|+++.... ..++......|..++.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 233445566666666666665211 12 33345556666666666666666654432 1112222345566666
Q ss_pred ccCCHHHHHHHHHHhHHhcC----------CCCCh---HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHH
Q 004487 489 HCGLIEEGLQYFNSMTQKYK----------LRPKK---EHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVIN 553 (749)
Q Consensus 489 ~~g~~~~a~~~~~~m~~~~~----------~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 553 (749)
..+++++|..+++.+.+... -.|+. ..+..++..+...|++.+|++.++++ ...| |..++..+..
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~ 458 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALAS 458 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66666666666666654200 01111 22334455566666666666666666 2333 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 554 SCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 554 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.++..|....|+..++.+..++| .+......++..+...|+|++|.++.....+.
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~l~P-~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVESLAP-RSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 66666666666666666666666 66666666666666666666666666555443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-13 Score=148.97 Aligned_cols=439 Identities=8% Similarity=-0.000 Sum_probs=298.7
Q ss_pred CCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchH-HHH--HHHHHhCCChhHHHH
Q 004487 84 SEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSF-NAL--ITGFAKEGLNEEAIK 160 (749)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~l--i~~~~~~g~~~~A~~ 160 (749)
.+.|++..|...+.++++........++ .++..+...|+.++|+..+++...|+...+ ..+ ...|...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4677778888888888777543323344 788888888999999999999887644443 333 446778899999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC--C
Q 004487 161 LFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE--V 238 (749)
Q Consensus 161 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~ 238 (749)
+|+++.+.. +-+...+..+...+...++.+.|.+.+..+.+.. |+...+..++..+...++..+|.+.++++.+ |
T Consensus 124 ly~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 124 LWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 999998863 2234556677778888899999999998887763 4455555566666556777679999998876 3
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHH
Q 004487 239 -DGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLV 317 (749)
Q Consensus 239 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 317 (749)
+...+..+...+.+.|-...|+++..+ .|+.++-. . ..
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~------------------------------~-----~~ 239 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAE------------------------------H-----YR 239 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHH------------------------------H-----HH
Confidence 445667777888888888888877665 23322210 0 00
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCcCH-Hh----HHHHHHHhcccCc
Q 004487 318 DMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRA-NISADQ-AT----FASILRASAELAS 391 (749)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-~t----~~~ll~~~~~~~~ 391 (749)
. =+.+.|.+..+....+... .-. +---.+.|+.-++.+... +-.|.. .- ..--+-++...++
T Consensus 240 ~-----l~~~~~a~~vr~a~~~~~~----~~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 240 Q-----LERDAAAEQVRMAVLPTRS----ETE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred H-----HHHHHHHHHHhhccccccc----chh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 0 0112222222211100000 000 000124455555554431 112321 11 1233456677777
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---------CcchHHHHHHHHHhcCCHHHHH
Q 004487 392 LSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPER---------NIVSWNALISACAQNGDAQATL 462 (749)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~ 462 (749)
...+...++.+...+.+....+--++.++|...+++++|..+|+.+... +......|.-+|...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 8888888888877776656667788888888888888888888877431 1222466788888899999999
Q ss_pred HHHHHHHHCC-------------CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 004487 463 KSFEDMVQSG-------------YQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGC 528 (749)
Q Consensus 463 ~~~~~m~~~g-------------~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 528 (749)
.+++++.+.- ..||-. .+..+...+...|++.+|++.++.+... -+-|......+.+.+...|.
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 9999888731 112333 3445566788999999999999999753 34478889999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchh
Q 004487 529 FDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAP 582 (749)
Q Consensus 529 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 582 (749)
+.+|++.++.. ...|+ ..+...+..+....+++++|..+.+.+.+..| .+..+
T Consensus 466 p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P-e~~~~ 520 (822)
T PRK14574 466 PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP-EDIPS 520 (822)
T ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC-CchhH
Confidence 99999999777 55675 55666777788888999999999999999999 66643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-13 Score=130.68 Aligned_cols=266 Identities=19% Similarity=0.227 Sum_probs=182.8
Q ss_pred HHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHHHHHHHHhCCCC
Q 004487 27 ELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNS 106 (749)
Q Consensus 27 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 106 (749)
-+|+..|+ ...+|.+||+++++--..+.|.++|++.... ..+.+..+||.+|.+.+- ..++.+..+|+.....|
T Consensus 198 L~~E~~PK-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 198 LLFETLPK-TDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHhhcCC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCC
Confidence 44444443 4557888999999888888999999888877 678888889888876543 33477888888888889
Q ss_pred chhHHHHHHHHhHcCCChhHHHHHH----ccCC----CCCcchHHHHHHHHHhCCChhH-HHHHHHHHHH----CCCCC-
Q 004487 107 ILIICNSLVDSYCKIRCLDLARRVF----KEMP----QKDSVSFNALITGFAKEGLNEE-AIKLFVEMQH----LGFKP- 172 (749)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~g~~p- 172 (749)
|..|+|++++..++.|+++.|++.+ .+|. +|...+|..+|..+.+.+++.+ |..++.+... ..++|
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 9999999998888888887776544 3332 3666777777777777766643 3334444332 11222
Q ss_pred ---ChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHH
Q 004487 173 ---SDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITC 249 (749)
Q Consensus 173 ---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 249 (749)
|...|...+..|.+..+.+.|.+++.......- |...|.. + ....-|.-+...
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N-------------~~~ig~~------~-----~~~fYyr~~~~l 407 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN-------------WKFIGPD------Q-----HRNFYYRKFFDL 407 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-------------hhhcChH------H-----HHHHHHHHHHHH
Confidence 344566677777777777777777665432110 0000000 0 112235556677
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh
Q 004487 250 YAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAK 322 (749)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 322 (749)
.++....+.-+..|+.|.-.-.-|+..+...+++|....+.++...+++..++..|.........-++...++
T Consensus 408 icq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 408 ICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 7888888889999999988888899999999999999999999999999999888865555444444444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-11 Score=129.27 Aligned_cols=587 Identities=14% Similarity=0.073 Sum_probs=381.3
Q ss_pred HHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHH
Q 004487 16 YVKSGNLATARELFNSMVD---RTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANEL 92 (749)
Q Consensus 16 ~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a 92 (749)
+...|++++|.+++.++.. ++..+|.+|-..|-+.|+.++++..+-..-- -.+-|...|..+-.-....|.+..|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHH
Confidence 3345999999999999855 3567899999999999999999987655432 3455667888888888899999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCc-c-------hHHHHHHHHHhCCChhHHHHHHHH
Q 004487 93 IQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDS-V-------SFNALITGFAKEGLNEEAIKLFVE 164 (749)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~-------~~~~li~~~~~~g~~~~A~~l~~~ 164 (749)
.-.+..+++.... +....---+..|-+.|+...|..-|.++-+.+. + .--.++..+...++-+.|++.++.
T Consensus 227 ~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998743 444444557788999999999888877765322 1 122345667777777999998888
Q ss_pred HHHCC-CCCChhhHHHHHHHHhCCCChHHHHHHHHHHHH---------------------------cCCCCChhH-HHHH
Q 004487 165 MQHLG-FKPSDFTFAAALSAGVGLADIALGRQVHAFVVK---------------------------TNFVENVFV-ANAL 215 (749)
Q Consensus 165 m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~---------------------------~g~~~~~~~-~~~L 215 (749)
....+ -..+..+++.++..+.+...++.+......... .+..++..+ ...+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 76632 233445566666666666666666555444443 112233333 2222
Q ss_pred HHHHHcCCChHHHHHHHccCC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCCh
Q 004487 216 LDLYSKHDCVVEARKLFGEMP----EVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDL 291 (749)
Q Consensus 216 i~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 291 (749)
.-.-.+.+...++..-|-... .-++..|.-+..+|.+.|.+.+|+.+|..+......-+.+.|-.+-.++-..+..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 222233444444444442222 2345578888899999999999999999998877667777888889999999999
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc-----H-------HHHHHHHHhCCChhH
Q 004487 292 QIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVP-----W-------TAMISAYVQKGNLEE 359 (749)
Q Consensus 292 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~-------~~li~~~~~~g~~~~ 359 (749)
+.|.+.+..++... +.+..+--.|...|-+.|+.++|.+.+..+..+|... | ......+.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998864 4455666788889999999999999999987666322 1 223456777888877
Q ss_pred HHHHHHHHHHCC-----CCc-----------------CHHhHHHHHHHhcccCcHHHHHHH------HHHHHHhCCCCch
Q 004487 360 ALNLFIEMCRAN-----ISA-----------------DQATFASILRASAELASLSLGKQL------HSFVIRSGFMSNV 411 (749)
Q Consensus 360 A~~l~~~m~~~g-----~~p-----------------~~~t~~~ll~~~~~~~~~~~a~~~------~~~~~~~~~~~~~ 411 (749)
=+.+-.+|.... +-| ...+...+..+-.+.++....+.- .......|+..+.
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd 624 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD 624 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence 666655554321 111 112222222232222221111111 1111112222221
Q ss_pred --hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc---------chHHHHHHHHHhcCCHHHHHHHHHHHHHC-C--CCCCH
Q 004487 412 --FSGSALLDMYAKSGSLKDAIQTFKEMPERNI---------VSWNALISACAQNGDAQATLKSFEDMVQS-G--YQPDS 477 (749)
Q Consensus 412 --~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--~~p~~ 477 (749)
..+.-++...++.+++++|..+...+...++ ..-..++.+....+++..|...++.|... + ..|..
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3455678888999999999998887764221 12345666777889999999999998874 1 13333
Q ss_pred H-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH--HHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHHHHHH
Q 004487 478 V-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYAS--MVDILCRSGCFDEAEKLMAQM-PFEPDEIMWSSVIN 553 (749)
Q Consensus 478 ~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 553 (749)
. .|+..++.....|+-.--.+++.... ...|+-.+.-+ ....+..++.+.-|+..+-+. ...||....+.+++
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLG 781 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 3 34445555555554333333333322 22232212222 234456678888888766554 44466444444433
Q ss_pred H-H----------HhcCCHHHHHHHHHHHhcCCCCC--CchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 554 S-C----------RIHKNLEFAKKAADQLFKMEKLR--DAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 554 ~-~----------~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
. + .+|-.+-.|..++++..++.. . .-.++..++.+|-..|-..-|..++++..+-.
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~-~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRR-CEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 2 2 233356777888888877765 4 56788899999999999999999999987643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-13 Score=141.78 Aligned_cols=449 Identities=13% Similarity=0.013 Sum_probs=250.8
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 004487 137 KDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALL 216 (749)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 216 (749)
++..+|.+++.+-.-+|+.+.|..++.+|++.|++.+..-|..+|-+ .++......+..-|...|+.|+..|+..-+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 57778999999999999999999999999999999998888888766 788888889999999999999999998877
Q ss_pred HHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCCh
Q 004487 217 DLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAW-----NEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDL 291 (749)
Q Consensus 217 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 291 (749)
-.+.+.|....+....+.-..-....+..+..+... .....-....+.+..-.|+......|...... ...|.-
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~ 357 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKG 357 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCC
Confidence 777776553332222111100011112222222110 11111112222222222332222222222211 113333
Q ss_pred HHHHHHHHHHHHhcCC---cchhHHHHHHHHHHhcC----------------------------------CHHHHHHHHH
Q 004487 292 QIGRQIHTQTIVTTAI---SEVKVANSLVDMYAKCG----------------------------------RFEEAKEIFA 334 (749)
Q Consensus 292 ~~a~~~~~~~~~~g~~---~~~~~~~~li~~~~~~g----------------------------------~~~~A~~~~~ 334 (749)
+...++-..+..-... .++..+..++.-|.+.- +...+.+-+.
T Consensus 358 e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv 437 (1088)
T KOG4318|consen 358 EEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLV 437 (1088)
T ss_pred chHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHh
Confidence 3333333333222111 11222222222222111 1111111111
Q ss_pred hcC----CCCccc-----------HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHH
Q 004487 335 NLS----HISTVP-----------WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLH 399 (749)
Q Consensus 335 ~~~----~~~~~~-----------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 399 (749)
... .+...+ -+.++..++..-+..+++..-+..... .-| ..|..++.-|.....++.|..+.
T Consensus 438 ~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~ 514 (1088)
T KOG4318|consen 438 GLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFV 514 (1088)
T ss_pred hhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhch
Confidence 110 011112 233444444444445554333322221 111 45778888888888888888888
Q ss_pred HHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004487 400 SFVIRS--GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE-----RN-IVSWNALISACAQNGDAQATLKSFEDMVQS 471 (749)
Q Consensus 400 ~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 471 (749)
+++... .+..|...+..+.+...+.+.+.++..++.++.+ ++ ..+.--++++.+..|+.+...++++-+...
T Consensus 515 ~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl 594 (1088)
T KOG4318|consen 515 DEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL 594 (1088)
T ss_pred hhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh
Confidence 776543 4556777788888999999999999999888874 21 223444667777888888888888888777
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHH------------------HHHHcCCHHHH
Q 004487 472 GYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKK-EHYASMVD------------------ILCRSGCFDEA 532 (749)
Q Consensus 472 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~------------------~~~~~g~~~~A 532 (749)
|+.-. .-+.....+.++...+++.++...++|.+.|.. +.+..++. .|.+.|++.+|
T Consensus 595 gl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a 670 (1088)
T KOG4318|consen 595 GLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDA 670 (1088)
T ss_pred hhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccch
Confidence 75442 223344556778888888888887777666632 23333322 24555555555
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 533 EKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 533 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
.++.+.-+..-.. -| ..|...|.+.--+...+.+.+++. ...|...|-+.|+|+.|..++.+|.
T Consensus 671 ~di~etpG~r~r~-~R----Dr~~de~e~~~lEll~elt~~lg~------~dRLL~sy~~~g~~erA~glwnK~Q 734 (1088)
T KOG4318|consen 671 GDITETPGVRCRN-GR----DRDTDEGEIVPLELLLELTHELGK------NDRLLQSYLEEGRIERASGLWNKDQ 734 (1088)
T ss_pred hhccccCcccccC-CC----ccccccCccccHHHHHHHHhHhHH------HHHHHHHHHhhhHHHHHHhHHhhCc
Confidence 5555443211000 00 223334444333344444333333 3448889999999999999999886
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-10 Score=116.69 Aligned_cols=509 Identities=11% Similarity=0.051 Sum_probs=341.3
Q ss_pred HHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCC
Q 004487 57 FKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQ 136 (749)
Q Consensus 57 ~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (749)
.+++++..+. ++-++..|-.. ......+.|+-++....+.- +.+.. |.-+|++...++.|.++++...+
T Consensus 366 ~RVlRKALe~--iP~sv~LWKaA----VelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 366 KRVLRKALEH--IPRSVRLWKAA----VELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHH----HhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555443 33333333332 33445555666666666553 22233 33345555667777777765543
Q ss_pred ---CCcchHHHHHHHHHhCCChhHHHHHHHH----HHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCC-
Q 004487 137 ---KDSVSFNALITGFAKEGLNEEAIKLFVE----MQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVEN- 208 (749)
Q Consensus 137 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~- 208 (749)
.+...|-+-...=-.+|+.+....+..+ +...|+..+...|..=..+|-..|..-.+..+...++..|.+..
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 4566676655555667777777766654 44567777777777777777777777777767666666665432
Q ss_pred -hhHHHHHHHHHHcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 004487 209 -VFVANALLDLYSKHDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSV 284 (749)
Q Consensus 209 -~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 284 (749)
..+|+.-.+.+.+.+.++-|+.+|....+ .+...|...+..=-..|..++-..+|++....
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--------------- 579 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--------------- 579 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---------------
Confidence 34555556666666666666666655443 23334544444444445555555555554432
Q ss_pred HHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---cccHHHHHHHHHhCCChhHHH
Q 004487 285 VANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHIS---TVPWTAMISAYVQKGNLEEAL 361 (749)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 361 (749)
-. -....+-....-+-..|+...|+.++...-+.+ ...|-+-+.....+.++++|.
T Consensus 580 --------------------~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 580 --------------------CP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred --------------------CC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHH
Confidence 21 122233333444455677777777776665433 333777777777788888888
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 004487 362 NLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE-- 439 (749)
Q Consensus 362 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 439 (749)
.+|.+... ..|+...|.--+..---++..++|.++++..++. ++.-...|-.+...+-+.++++.|.+.|..-.+
T Consensus 639 ~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 639 DLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred HHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence 88877765 4566666655555555567778888887776664 333445677777888888999999988876653
Q ss_pred C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 004487 440 R-NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYAS 518 (749)
Q Consensus 440 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 518 (749)
| .+..|-.|...--+.|+.-.|..++++..-.+ +-|...|...+..=.+.|+.+.|..+..+..++ .+.+...|.-
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaE 792 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAE 792 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHH
Confidence 3 45578888777778889999999999988753 345668888999999999999999998888875 5566778888
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchh
Q 004487 519 MVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWES 598 (749)
Q Consensus 519 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 598 (749)
-|.+..+.++-..+.+.+++.. .|+.+.-+....+....+++.|..-|+++++.+| ++..+|..+-..+.+.|.-++
T Consensus 793 aI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 793 AIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHH
Confidence 8888888888888888888764 3555666677778888899999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHhCCCccCCceeEEEeC
Q 004487 599 VSQVKKAMRERGVRKVTAYSWVELK 623 (749)
Q Consensus 599 a~~~~~~m~~~g~~~~~~~s~~~~~ 623 (749)
-.+++++-.... |.-|..|..+.
T Consensus 870 ~kev~~~c~~~E--P~hG~~W~avS 892 (913)
T KOG0495|consen 870 QKEVLKKCETAE--PTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHhccC--CCCCcHHHHHh
Confidence 999998876553 44566665443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-12 Score=125.00 Aligned_cols=270 Identities=13% Similarity=0.111 Sum_probs=197.8
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCcccH----HHHH-HHHHhCC-ChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcH
Q 004487 319 MYAKCGRFEEAKEIFANLSHISTVPW----TAMI-SAYVQKG-NLEEALNLFIEMCRANISADQATFASILRASAELASL 392 (749)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~li-~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 392 (749)
-|.+.|+++.|.++++-....|..+- |.|- --|.+-| ++..|.+.-+...... +-+....+.--+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 36788888888888887776665442 2221 1233333 4555555544433211 11222222222223446888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004487 393 SLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMV 469 (749)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 469 (749)
+.|.+.+.......-.-....|| +.-.+-+.|++++|++.|-++. ..++...-.+.+.|-...+..+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 88888888887665433333343 3345678899999999997765 4566666677888888999999999998876
Q ss_pred HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH
Q 004487 470 QSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYK-LRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEI 546 (749)
Q Consensus 470 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 546 (749)
. +.| |...+.-|...|-+.|+-.+|.+.+-.- |. ++-+.++...|..-|....-+++|+.+|++. -+.|+..
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 6 555 5557778888999999999999887543 33 3447889889999999999999999999998 6789999
Q ss_pred hHHHHHHHH-HhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCc
Q 004487 547 MWSSVINSC-RIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQW 596 (749)
Q Consensus 547 ~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 596 (749)
-|..++..| ++.|++..|..+++.....-| .|......|..++...|..
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfp-edldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFP-EDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCc-cchHHHHHHHHHhccccch
Confidence 999999887 789999999999999999999 9999999999999988853
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-11 Score=129.42 Aligned_cols=354 Identities=11% Similarity=-0.020 Sum_probs=196.2
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHH
Q 004487 238 VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLV 317 (749)
Q Consensus 238 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 317 (749)
++..++.+.+..-.-+|+.+.|..++.+|++.|+..+.+-|..++-+ .++......+..-|...|+.|+..++.-.+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 77888888888888888888888888888888888888877777665 677777788888888888888888877776
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCh-----hHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcH
Q 004487 318 DMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNL-----EEALNLFIEMCRANISADQATFASILRASAELASL 392 (749)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 392 (749)
-...+.|....+.+..+.-.......+..+..+...+.+. .-....+.+..-.|+......|..... ....|.-
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~ 357 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKG 357 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCC
Confidence 6666655432222211110000001122222221111111 111122222222333333323322222 1224455
Q ss_pred HHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-hHHHHHHHHHh---cC---------
Q 004487 393 SLGKQLHSFVIRSGFMS---NVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIV-SWNALISACAQ---NG--------- 456 (749)
Q Consensus 393 ~~a~~~~~~~~~~~~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g--------- 456 (749)
+..+++...+....... ++..+..+ +.+.|.+...+... .++ .-.+... ..
T Consensus 358 e~veqlvg~l~npt~r~s~~~V~a~~~~------------lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell 424 (1088)
T KOG4318|consen 358 EEVEQLVGQLLNPTLRDSGQNVDAFGAL------------LRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELL 424 (1088)
T ss_pred chHHHHHhhhcCCccccCcchHHHHHHH------------HHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHH
Confidence 55555554443321111 12222222 33334433322111 111 0011111 01
Q ss_pred ---CHHHHHHHHHH-----HHHCCCCC-------CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 004487 457 ---DAQATLKSFED-----MVQSGYQP-------DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVD 521 (749)
Q Consensus 457 ---~~~~A~~~~~~-----m~~~g~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 521 (749)
+...+++-+.. ..+. +.| =...-+.++..|...-+..+++..-+..... - -| ..|..||+
T Consensus 425 ~~lrkns~lr~lv~Lss~Eler~-he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-l-f~--g~ya~Li~ 499 (1088)
T KOG4318|consen 425 ENLRKNSFLRQLVGLSSTELERS-HEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-L-FA--GLYALLIK 499 (1088)
T ss_pred HHhCcchHHHHHhhhhHHHHhcc-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hh--hHHHHHhh
Confidence 11111111111 1111 111 1113345555666666666666554443321 1 22 67899999
Q ss_pred HHHHcCCHHHHHHHHHhCC-----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CCchhHHHHHHHHHHcC
Q 004487 522 ILCRSGCFDEAEKLMAQMP-----FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKL--RDAAPYVAMSNIYAVAG 594 (749)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 594 (749)
.+.+....++|..+.++.. +.-|..-+..+.+...+++....+..+++++.+.-.. .-..+...+.+.-+..|
T Consensus 500 l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~ag 579 (1088)
T KOG4318|consen 500 LMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAG 579 (1088)
T ss_pred hHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhcc
Confidence 9999999999999999882 3345566778888888999999999999988773320 22456667888888999
Q ss_pred CchhHHHHHHHHHhCCCcc
Q 004487 595 QWESVSQVKKAMRERGVRK 613 (749)
Q Consensus 595 ~~~~a~~~~~~m~~~g~~~ 613 (749)
.-+...++.+-+...|+.-
T Consensus 580 qqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 580 QQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred CHHHHHHHHHHHHHhhhhh
Confidence 9999999999999888865
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.2e-09 Score=105.38 Aligned_cols=416 Identities=11% Similarity=0.057 Sum_probs=297.3
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC
Q 004487 158 AIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE 237 (749)
Q Consensus 158 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 237 (749)
=.+++++.++. -|+... |=++.....+.+.|+.++...++.- +.+ ..|.-+|++..-++.|.+++....+
T Consensus 365 K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s----~dLwlAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 365 KKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECC-PQS----MDLWLALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cch----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555543 344332 2344555666666777777776542 222 2344556666777888888776654
Q ss_pred ---CCcchHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcc-
Q 004487 238 ---VDGVSYNVMITCYAWNEQYKESLKLFRE----LQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISE- 309 (749)
Q Consensus 238 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~- 309 (749)
.+...|.+-..-=-.+|+.+....++++ +...|+..+...|..=-.+|-..|..-.+..|...++..|+...
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 4666776666656677888777777654 56778888888888888888888888888888888888887553
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 004487 310 -VKVANSLVDMYAKCGRFEEAKEIFANLSH---ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRA 385 (749)
Q Consensus 310 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 385 (749)
..+++.-.+.+.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++.... .+-....+......
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 45677777888888999999998887654 33444877777777788888888888888775 23344555555566
Q ss_pred hcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcchHHHHHHHHHhcCCHHHHHH
Q 004487 386 SAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP--ERNIVSWNALISACAQNGDAQATLK 463 (749)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 463 (749)
.-..|+...|+.++..+.+.... +..++-+-+..-....+++.|+.+|.+.. .+....|.--+....-.+..++|++
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 66678899999988888876543 67778888888888889999999998776 4666777766666677788899999
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCC-
Q 004487 464 SFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPF- 541 (749)
Q Consensus 464 ~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 541 (749)
++++.++ .-|+-. .|..+...+.+.++++.|...|..=.+ ..+-.+..|-.|.++=-+.|.+-.|..++++...
T Consensus 673 llEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 9988887 567765 666666678888888888887765442 2334556788888888888888899999988832
Q ss_pred CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 004487 542 EP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIY 590 (749)
Q Consensus 542 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 590 (749)
.| +...|-..+..-.++|+.+.|..+..++++--| .+...|.--+.+.
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp-~sg~LWaEaI~le 797 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECP-SSGLLWAEAIWLE 797 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccchhHHHHHHhc
Confidence 24 678888888888888999998888887776555 4444444333333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-09 Score=115.10 Aligned_cols=516 Identities=12% Similarity=0.091 Sum_probs=277.0
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccC---CCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 004487 87 DTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEM---PQKDSVSFNALITGFAKEGLNEEAIKLFV 163 (749)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 163 (749)
|+.+.|..++.++++... .+...|-.|-..|-..|+.+++...+-.. ...|..-|-.+-.-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 555555555555555542 23444555555555555555554433221 12344445555555555555555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHH----HHHHHHcCCChHHHHHHHccCCC--
Q 004487 164 EMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANA----LLDLYSKHDCVVEARKLFGEMPE-- 237 (749)
Q Consensus 164 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----Li~~y~~~g~~~~A~~~f~~~~~-- 237 (749)
+..+.. +++...+--=...|-+.|+...|..-+..+.....+.|..-.-. .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 555431 11212222222334445555555555555544433222222222 23344445555666666655543
Q ss_pred ---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----------------------CCcchHH----HHHHHHHcc
Q 004487 238 ---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFD----------------------RSQFPFS----TLLSVVANK 288 (749)
Q Consensus 238 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------------------p~~~t~~----~ll~~~~~~ 288 (749)
-+...++.++..|.+...++.|......+...... |+...|. .+.-+....
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 23335667777777777777777777666551111 1111111 222334455
Q ss_pred CChHHHHHHHHHHHHhc--CCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCcccHHHHHHHHHhCCChhHHHH
Q 004487 289 LDLQIGRQIHTQTIVTT--AISEVKVANSLVDMYAKCGRFEEAKEIFANLSH----ISTVPWTAMISAYVQKGNLEEALN 362 (749)
Q Consensus 289 ~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~ 362 (749)
...+....+.....+.. ..-++..+.-+.++|...|++.+|.++|..+.. .+...|-.+..+|...|.+++|++
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 56666666666666666 344567778888888888888888888887753 344558888888888888888888
Q ss_pred HHHHHHHCCCCcCH-HhHHHHHHHhcccCcHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004487 363 LFIEMCRANISADQ-ATFASILRASAELASLSLGKQLHSFVI--------RSGFMSNVFSGSALLDMYAKSGSLKDAIQT 433 (749)
Q Consensus 363 l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 433 (749)
.|...... .|+. ..-.+|-..+.+.|+.++|.+.+..+. ..+..|+....--..+.|.+.|+.++=..+
T Consensus 471 ~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 471 FYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 88887763 4433 233344445567788888877776633 234455555555666777777776653333
Q ss_pred HhhCCC--------------------------CCcchHHHHHHHHHhcCCHHHHHH------HHHHHHHCCCCCCHH--H
Q 004487 434 FKEMPE--------------------------RNIVSWNALISACAQNGDAQATLK------SFEDMVQSGYQPDSV--S 479 (749)
Q Consensus 434 ~~~~~~--------------------------~~~~~~~~li~~~~~~g~~~~A~~------~~~~m~~~g~~p~~~--t 479 (749)
-..|.. .....--.++.+-.+.++.....+ .+.--...|+..+.. .
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 222220 011111122222222222111111 111111223333332 4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH----HHHHHHHHHHHcCCHHHHHHHHHhC----CC--CC-CHHhH
Q 004487 480 LLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKE----HYASMVDILCRSGCFDEAEKLMAQM----PF--EP-DEIMW 548 (749)
Q Consensus 480 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p-~~~~~ 548 (749)
|.-++.+.++.+.+++|..+...+...+-+..+.. .-.+++.+....+++.+|.+.++.| ++ .| -...|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 55566667777777888777776665433333332 2344556666777777777777766 11 22 24566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHH
Q 004487 549 SSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAM 606 (749)
Q Consensus 549 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 606 (749)
+...+...++++-..-.+.+..+....|..++..+..-+......+.|..|...+-..
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra 766 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRA 766 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHH
Confidence 6656666666655555555555555555233555556666667777777777755544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-13 Score=137.91 Aligned_cols=253 Identities=13% Similarity=0.178 Sum_probs=112.5
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHH-HhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 004487 349 SAYVQKGNLEEALNLFIEMCRANISADQATFASILR-ASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSL 427 (749)
Q Consensus 349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 427 (749)
..+.+.|++++|++++++.......|+...|-.++. .+...++.+.|.+.+..+...+.. ++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 344455555555555544333221333333333222 333455566666666666554432 44456666666 678888
Q ss_pred HHHHHHHhhCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 004487 428 KDAIQTFKEMP--ERNIVSWNALISACAQNGDAQATLKSFEDMVQSG-YQPDSVSLLSVLSACSHCGLIEEGLQYFNSMT 504 (749)
Q Consensus 428 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 504 (749)
++|.+++...- .++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|.+.++...
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887664 3566778888888999999999999999987643 34566677788888999999999999999998
Q ss_pred HhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 505 QKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 505 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
+. .|+ ......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...++++.+..| .|+.
T Consensus 174 ~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d~~ 249 (280)
T PF13429_consen 174 EL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DDPL 249 (280)
T ss_dssp HH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-HH
T ss_pred Hc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc-cccc
Confidence 54 564 777888999999999999988888776 2234667889999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
....+++++...|+.++|.+++.+.-
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.4e-10 Score=108.84 Aligned_cols=212 Identities=12% Similarity=0.148 Sum_probs=168.2
Q ss_pred cCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004487 389 LASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSF 465 (749)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (749)
.|+.-.+.+-++.+++....+. ..|--+..+|....+.++-.+.|+... ..|..+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 3566666677777766553332 225566678889999999999998776 345667777666667778899999999
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 004487 466 EDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP 543 (749)
Q Consensus 466 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 543 (749)
++.++ +.|+.+ .|..+-.+.-+.+.++++...|++..++ ++--++.|+-....+...+++++|.+.|+.. ..+|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99988 677654 7888888888899999999999999875 4556788999999999999999999999887 4444
Q ss_pred C---------HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 544 D---------EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 544 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
+ +.+-.+++-. +-.+|+..|+.+++++++++| ....+|..|+.+-.+.|+.++|.++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4 2333333333 344899999999999999999 999999999999999999999999999753
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-08 Score=98.67 Aligned_cols=480 Identities=11% Similarity=0.079 Sum_probs=333.9
Q ss_pred cCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHH
Q 004487 120 KIRCLDLARRVFKEMPQ---KDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQV 196 (749)
Q Consensus 120 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 196 (749)
..+++..|+++|++... ++...|--.+..=.++.....|..++++....=.+.|..-|- -+..=-..|+...|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHHH
Confidence 34667778888877664 456667777777778888888888887776532222332221 22222345778888888
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004487 197 HAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMP--EVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRS 274 (749)
Q Consensus 197 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 274 (749)
|..... ..|+...|++.|++=.+-..++.|+.++++.. .|++.+|--....=.++|+...|..+|...... -.|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 887764 46788888888888888888888888887754 478888877777777888888888777766432 112
Q ss_pred cchHHHHHHHH----HccCChHHHHHHHHHHHHhcCCc-chhHHHHHHHHHHhcCCHHHHHHHH--------HhcCC---
Q 004487 275 QFPFSTLLSVV----ANKLDLQIGRQIHTQTIVTTAIS-EVKVANSLVDMYAKCGRFEEAKEIF--------ANLSH--- 338 (749)
Q Consensus 275 ~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~--- 338 (749)
...-..++.++ .+....+.|+.++..+++.-... ...+|..++..--+.|+.....+.. +.+..
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 22223333343 35667888999999988875333 2456666666666677755444432 22222
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCH-------HhHHHHHHHh---cccCcHHHHHHHHHHHHHhCCC
Q 004487 339 ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQ-------ATFASILRAS---AELASLSLGKQLHSFVIRSGFM 408 (749)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~ 408 (749)
.|-.+|--.+..-...|+.+...++|+..... ++|-. ..|.-+=-+| ....+.+.+++++...++ -++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcC
Confidence 34556777777778889999999999998864 55532 1222222222 346788999999999888 455
Q ss_pred CchhHHHHHHHHHH----hcCCHHHHHHHHhhCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 004487 409 SNVFSGSALLDMYA----KSGSLKDAIQTFKEMP--ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLL 481 (749)
Q Consensus 409 ~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~ 481 (749)
....++.-+--+|+ ++.++..|.+++-... -|...+|...|..-.+.++++....+|++.++ ..| |..+|.
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ 475 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWS 475 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHH
Confidence 66677777666665 6789999999998776 47778888889888999999999999999999 455 456887
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHHHHHHHHH----
Q 004487 482 SVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWSSVINSCR---- 556 (749)
Q Consensus 482 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~---- 556 (749)
.....=...|+.+.|..+|.-..+...+......|-+.|+.=...|.++.|..++++. ...+...+|-++..--.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 7777777899999999999988865444445567788888888999999999999998 44556668877765332
Q ss_pred -hcC-----------CHHHHHHHHHHHhc----CCCCCC-chhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 557 -IHK-----------NLEFAKKAADQLFK----MEKLRD-AAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 557 -~~g-----------~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
+.+ ++..|..+|+++.. .+|+.. .......-+.-...|...+...+-+.|.+
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 344 67788889988754 333111 12233445555667887788888777743
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-09 Score=107.46 Aligned_cols=247 Identities=13% Similarity=0.180 Sum_probs=185.7
Q ss_pred HHhCCChhHHHHHHHHHHHCCC--CcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 004487 351 YVQKGNLEEALNLFIEMCRANI--SADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLK 428 (749)
Q Consensus 351 ~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 428 (749)
.-...++++|+.+|+++.+... --|..||+.++-.-.....+..--+....+- +--+.+...+.+.|+-.++.+
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHH
Confidence 3345566777777777665421 1145677766654333222221111111111 123456677888999999999
Q ss_pred HHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 004487 429 DAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMT 504 (749)
Q Consensus 429 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 504 (749)
+|...|++..+ .....|+.|..-|....+...|++-++..++ +.| |...|-.|..+|.-.+...-|+-+|++..
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 99999998874 3456899999999999999999999999998 555 66799999999999999999999999887
Q ss_pred HhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhc-------C
Q 004487 505 QKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFK-------M 574 (749)
Q Consensus 505 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~ 574 (749)
.++| |...|.+|.+.|.+.++.++|++-|.+. .-..+...+..|...+-+.++.++|...+++.++ .
T Consensus 426 ---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~ 502 (559)
T KOG1155|consen 426 ---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI 502 (559)
T ss_pred ---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Confidence 4566 6789999999999999999999999988 2223457888999999999999999999999887 2
Q ss_pred CCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 575 EKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 575 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
+| ....+-.-|+.-+.+.++|++|........
T Consensus 503 ~~-~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 503 DD-ETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred ch-HHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 33 334455568888999999999998776543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-10 Score=119.12 Aligned_cols=225 Identities=12% Similarity=0.100 Sum_probs=144.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHH
Q 004487 317 VDMYAKCGRFEEAKEIFANLSHI---STVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLS 393 (749)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 393 (749)
...+...|+.+.|...++.+.+. +......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------
Confidence 45667777777777777776543 2333666777778888888888888888776543221 111000
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004487 394 LGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQ 470 (749)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (749)
...+..++....+..+.+...++++.++ ..++.....+..++...|+.++|.+++++..+
T Consensus 229 -----------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 229 -----------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred -----------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0011222222233344555556666655 24566677777778888888888888877776
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHH
Q 004487 471 SGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWS 549 (749)
Q Consensus 471 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 549 (749)
.+||.... ++.+....++.+++++..+...+++ +-|...+.++..++.+.|++++|.+.|++. ...|+...+.
T Consensus 292 --~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~ 365 (398)
T PRK10747 292 --RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA 365 (398)
T ss_pred --cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 34444211 2333344577888888887777542 234556677788888888888888888777 6678877777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCC
Q 004487 550 SVINSCRIHKNLEFAKKAADQLFKME 575 (749)
Q Consensus 550 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 575 (749)
.|...+...|+.++|...+++.+.+-
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 78888888888888888888876643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-11 Score=122.71 Aligned_cols=160 Identities=13% Similarity=0.178 Sum_probs=88.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 004487 441 NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASM 519 (749)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 519 (749)
.+.+|-++.+.|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... ..++.||+++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnAw 492 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNAW 492 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHHH
Confidence 345666666666666666666666666555 444 23355555555555555666666654332 3444555543
Q ss_pred ---HHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC
Q 004487 520 ---VDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAG 594 (749)
Q Consensus 520 ---i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 594 (749)
.-.|.+.++++.|+-.|+++ .+.|. .++.-.+...+.+.|+.|+|++++++++.++| .|+-.-+..+.++...+
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLG 571 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhc
Confidence 23455666666666666555 45553 33334444445555666666666666666666 55555555566666666
Q ss_pred CchhHHHHHHHHHh
Q 004487 595 QWESVSQVKKAMRE 608 (749)
Q Consensus 595 ~~~~a~~~~~~m~~ 608 (749)
++++|.+.++++++
T Consensus 572 ~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 572 RYVEALQELEELKE 585 (638)
T ss_pred chHHHHHHHHHHHH
Confidence 66666666666554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-07 Score=95.89 Aligned_cols=444 Identities=13% Similarity=0.169 Sum_probs=222.0
Q ss_pred chhHHHHHHHHcCCChHHHHHHHhcCCCC-----CcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHH
Q 004487 7 VSTNMLISGYVKSGNLATARELFNSMVDR-----TAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLS 81 (749)
Q Consensus 7 ~~~~~ll~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~ 81 (749)
.+|-..+..+.++|++..-+..|++.... -...|...+.-....|-++-++.+|++..+- .|. .-.--+.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~---~P~--~~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV---APE--AREEYIE 177 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---CHH--HHHHHHH
Confidence 34555566666677777777777654221 2224666666666666666677777766542 222 2344445
Q ss_pred hcCCCCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHhHcCCC---hhHHHHHHccCCC--CCc--chHHHHHHH
Q 004487 82 GCSEPDTANELIQVHADIIKFG------YNSILIICNSLVDSYCKIRC---LDLARRVFKEMPQ--KDS--VSFNALITG 148 (749)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~--~~~--~~~~~li~~ 148 (749)
.+...+++++|.+.++.++... .+.+-..|+-+-+..++.-+ --....+++.+.. +|. ..|++|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 5556666777666666655321 13344455555555544322 2223344444443 232 357777777
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHcCCChHH
Q 004487 149 FAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVV-KTNFVENVFVANALLDLYSKHDCVVE 227 (749)
Q Consensus 149 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~Li~~y~~~g~~~~ 227 (749)
|.+.|.+++|.++|++-.+. ..+...|+.+.++|+.......+..+- ... +.+-+.+.. +++-
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHH
Confidence 77777777777777765553 223344555555555433222211111 000 011111111 1111
Q ss_pred HHHHHccCCC---------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChH
Q 004487 228 ARKLFGEMPE---------------VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQ 292 (749)
Q Consensus 228 A~~~f~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 292 (749)
...-|+.+.. .++..|..-+. ...|+..+-...|.+..+. +.|...
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka---------------- 382 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKA---------------- 382 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccC----------------
Confidence 2222222221 12223333222 2234455555555554332 112111
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc-------HHHHHHHHHhCCChhHHHHHHH
Q 004487 293 IGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVP-------WTAMISAYVQKGNLEEALNLFI 365 (749)
Q Consensus 293 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~A~~l~~ 365 (749)
...-...|..+.+.|-..|+++.|+.+|++..+.+-.+ |-.-...-.+..+++.|+++.+
T Consensus 383 -------------~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 383 -------------VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred -------------CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 00112334455555555555555555555554332222 2222223334445555555544
Q ss_pred HHHHC----------CCC-------cCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 004487 366 EMCRA----------NIS-------ADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLK 428 (749)
Q Consensus 366 ~m~~~----------g~~-------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 428 (749)
..... |-. -+...|+..+..--..|-++..+.+++.+++..+.....+.| ....+-...-++
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfe 528 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFE 528 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHH
Confidence 43221 000 122334444444445667788888888888876543222222 223344556678
Q ss_pred HHHHHHhhCCC----CCc-chHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCCHHHHHH
Q 004487 429 DAIQTFKEMPE----RNI-VSWNALISACAQ---NGDAQATLKSFEDMVQSGYQPDSVSLLSVLSA--CSHCGLIEEGLQ 498 (749)
Q Consensus 429 ~A~~~~~~~~~----~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~ 498 (749)
++.+++++-.. |++ ..||..+.-+.+ ....+.|..+|++.++ |.+|...-+..|+-| =..-|....|+.
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88888887652 443 478887766554 2357889999999988 677776544444433 223577788888
Q ss_pred HHHHhHH
Q 004487 499 YFNSMTQ 505 (749)
Q Consensus 499 ~~~~m~~ 505 (749)
++++...
T Consensus 608 iyerat~ 614 (835)
T KOG2047|consen 608 IYERATS 614 (835)
T ss_pred HHHHHHh
Confidence 8877653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-09 Score=105.00 Aligned_cols=416 Identities=12% Similarity=0.116 Sum_probs=300.9
Q ss_pred cCCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHH
Q 004487 221 KHDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQI 297 (749)
Q Consensus 221 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 297 (749)
..+++..|+.+|++..+ +++..|--.+..=.++.+...|..++++....-...|..-| .-+..--..|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence 34567778888888776 55667777777888888888888888887654333333332 223344567899999999
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcC
Q 004487 298 HTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLS--HISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISAD 375 (749)
Q Consensus 298 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 375 (749)
|..-.+. .|+...|.+.|+.-.+-+.++.|+.++++.. .|++.+|--...--.++|+..-|..+|....+. -.|
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 9887764 8999999999999999999999999999864 688888888888888899999999999887763 123
Q ss_pred HHhHHHHHHHh----cccCcHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCH---HHHHHHHhhC-----CC---
Q 004487 376 QATFASILRAS----AELASLSLGKQLHSFVIRSGFMS-NVFSGSALLDMYAKSGSL---KDAIQTFKEM-----PE--- 439 (749)
Q Consensus 376 ~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~---~~A~~~~~~~-----~~--- 439 (749)
...-..++.++ .+...++.|+-++...++.-... ....|..+...=-+-|+. +++.--=.++ ..
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 33333344444 34567788888998888763322 234454444444444554 3333222222 22
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---hccCCHHHHHHHHHHhHHhcCC
Q 004487 440 RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-------SLLSVLSAC---SHCGLIEEGLQYFNSMTQKYKL 509 (749)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~ 509 (749)
-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+++.+.++++...+ -|
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lI 396 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LI 396 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hc
Confidence 35678888888888889999999999999985 666321 222222222 347899999999999884 24
Q ss_pred CCChHHHHHHHHHH----HHcCCHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHH
Q 004487 510 RPKKEHYASMVDIL----CRSGCFDEAEKLMAQM-PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYV 584 (749)
Q Consensus 510 ~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 584 (749)
+....+++-+--+| .|+.++..|.+++... |.-|..-++...|..-.+.++++....++++.++-+| .|..++.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~ 475 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWS 475 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHH
Confidence 44556777665554 4788999999999877 8889999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHH
Q 004487 585 AMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENL 649 (749)
Q Consensus 585 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l 649 (749)
-.+.+-...|+++.|..+++...++...-.|..-|- ..-.|.....-+..+..+|..+.+.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----HhhhhhhhcchHHHHHHHHHHHHHh
Confidence 999999999999999999999988866555555442 1112333334455566666665543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-10 Score=119.10 Aligned_cols=274 Identities=10% Similarity=0.111 Sum_probs=202.9
Q ss_pred cCCHHHHHHHHHhcCCCC-ccc--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHH--HHHHHhcccCcHHHHHH
Q 004487 323 CGRFEEAKEIFANLSHIS-TVP--WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFA--SILRASAELASLSLGKQ 397 (749)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~-~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 397 (749)
.|+++.|++.+....+.. ... +........+.|++++|...|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888888887765432 122 322233447888899999999888763 45544333 23456677888999988
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc-----------chHHHHHHHHHhcCCHHHHHHHHH
Q 004487 398 LHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNI-----------VSWNALISACAQNGDAQATLKSFE 466 (749)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 466 (749)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887766 44677888889999999999999999888874222 133344444445556667777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-
Q 004487 467 DMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD- 544 (749)
Q Consensus 467 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~- 544 (749)
.+.+. .+.+......+..++...|+.++|.+.+++..+ ..|+.... ++.+....++.+++.+.+++. ...|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76443 345677888899999999999999999988875 35555322 223333559999999999888 55565
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 545 EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 545 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
+..+.++...|...+++++|...|+++++..| +...|..|+.++.+.|+.++|.+++++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P--~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRP--DAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56677888899999999999999999999998 67778899999999999999999988753
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-10 Score=120.16 Aligned_cols=274 Identities=14% Similarity=0.119 Sum_probs=211.4
Q ss_pred CHHHHHHHHHhcCC--CCcccH--HHHHHHHHhCCChhHHHHHHHHHHHCC--CCcCHHhHHHHHHHhcccCcHHHHHHH
Q 004487 325 RFEEAKEIFANLSH--ISTVPW--TAMISAYVQKGNLEEALNLFIEMCRAN--ISADQATFASILRASAELASLSLGKQL 398 (749)
Q Consensus 325 ~~~~A~~~~~~~~~--~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~ 398 (749)
+.++|...|..+++ .|+. | ..+-.+|...+++++|.++|+...+.. ..-+...|+++|--+-+. .+...
T Consensus 334 ~~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 46788899988664 3333 4 456678999999999999999998742 112556787777644321 11222
Q ss_pred H-HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004487 399 H-SFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPER---NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQ 474 (749)
Q Consensus 399 ~-~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 474 (749)
+ ..+++ --+..+.+|.++.+.|.-.++.+.|.+.|++..+- ...+|+.+..-+.....++.|...|+..+. +.
T Consensus 409 Laq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 2 22222 23457889999999999999999999999998854 456777777778888999999999999876 56
Q ss_pred CCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHH
Q 004487 475 PDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSS 550 (749)
Q Consensus 475 p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 550 (749)
|+.. .|..+...|.+.++++.|.-.|+... .+.|. .....++...+-+.|+.++|+++++++ ...| |+-.---
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 6554 77788889999999999999999887 57784 456677888999999999999999998 4444 3222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
-...+...+++++|...++++.++-| .+...|.+++.+|-+.|+.+.|..-+.-|.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 34445667899999999999999999 999999999999999999999999888776543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.6e-09 Score=101.59 Aligned_cols=253 Identities=11% Similarity=0.108 Sum_probs=193.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCC
Q 004487 349 SAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGF--MSNVFSGSALLDMYAKSGS 426 (749)
Q Consensus 349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~ 426 (749)
.+|-...+.++++.-.......|+.-+...-+....+.-...+++.|+.+|+.+.+... -.|..+|+.++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 44555556777777777777777655555444444555667788888888888887642 1356666665533222222
Q ss_pred HHH-HHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhH
Q 004487 427 LKD-AIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMT 504 (749)
Q Consensus 427 ~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 504 (749)
+.- |..++ .+.+-.+.|.-.+.+-|+-.++.++|...|++.++ +.|... .|+.+..-|....+...|.+-++...
T Consensus 315 Ls~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 LSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 222 22222 23333445556667778888999999999999998 567654 67777778999999999999999887
Q ss_pred HhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 505 QKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 505 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
.+.| |-..|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|.+++..+- .+..
T Consensus 392 ---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~ 467 (559)
T KOG1155|consen 392 ---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGS 467 (559)
T ss_pred ---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchH
Confidence 4556 5678888999999999999999999998 7777 689999999999999999999999999999988 7889
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
.|..|+++|-+.++.++|...+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999988755
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.2e-10 Score=107.81 Aligned_cols=256 Identities=11% Similarity=0.105 Sum_probs=175.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCcCHHh--HHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 004487 349 SAYVQKGNLEEALNLFIEMCRANISADQAT--FASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGS 426 (749)
Q Consensus 349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 426 (749)
..|.++|+++.|+++++-+.+..-+.-... -.+.+.-.-.-.++..|.++-+..+...- -+....+.-.+.-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCc
Confidence 347889999999999988876533222221 12233333333456666666655543321 111111111222345689
Q ss_pred HHHHHHHHhhCCCCCcchHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 004487 427 LKDAIQTFKEMPERNIVSWNALIS---ACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSM 503 (749)
Q Consensus 427 ~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 503 (749)
+++|.+.+.+....|...-.+|.+ .+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|++++...
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999998777665554433 366789999999999888662 2334557778888899999999999998665
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 504 TQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQ-MPFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 504 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
.. -++.|+...+.|.++|-+.|+-.+|.+..-. ...-| +..+..-|..-|....=.++++..|+++--+.| ....
T Consensus 585 ~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp-~~~k 661 (840)
T KOG2003|consen 585 NS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP-NQSK 661 (840)
T ss_pred cc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc-cHHH
Confidence 42 3555788999999999999999999987544 34334 444544455556666778999999999999998 4444
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
--..++.++.+.|++.+|..+++..-.+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4445566788999999999999887543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-09 Score=112.25 Aligned_cols=289 Identities=13% Similarity=0.089 Sum_probs=139.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCcch-HHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHH
Q 004487 252 WNEQYKESLKLFRELQFTRFDRSQFP-FSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAK 330 (749)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 330 (749)
..|+++.|.+.+.+..+. .|++.. +...-.+....|+.+.+.+.+....+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467777777777665543 233222 22223334445666666666655544332222223333345555555555555
Q ss_pred HHHHhcCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCC
Q 004487 331 EIFANLSHI---STVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGF 407 (749)
Q Consensus 331 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 407 (749)
..++.+.+. +...+..+...|.+.|++++|.+++..+.+.++.+. ..+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH-----------------------
Confidence 555554432 222244455555555555555555555555432211 11100000
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---H
Q 004487 408 MSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSL---L 481 (749)
Q Consensus 408 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~ 481 (749)
..+..+++.-......+...+.++..++ .+...+..+...+...|+.++|.+++++..+. .||.... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0011111111112223344444444442 36667777777777778888888877777773 4444321 1
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHHhHHHHHHHHHhc
Q 004487 482 SVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQ--M-PFEPDEIMWSSVINSCRIH 558 (749)
Q Consensus 482 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~ 558 (749)
.........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 111122234555666666655554322222113344555555666666666666652 2 3445555555555555666
Q ss_pred CCHHHHHHHHHHHh
Q 004487 559 KNLEFAKKAADQLF 572 (749)
Q Consensus 559 g~~~~a~~~~~~~~ 572 (749)
|+.++|.+++++.+
T Consensus 384 g~~~~A~~~~~~~l 397 (409)
T TIGR00540 384 GDKAEAAAMRQDSL 397 (409)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-09 Score=115.73 Aligned_cols=282 Identities=11% Similarity=0.051 Sum_probs=195.1
Q ss_pred HcCCChHHHHHHHccCCCC--Ccc-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc--hHHHHHHHHHccCChHHH
Q 004487 220 SKHDCVVEARKLFGEMPEV--DGV-SYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQF--PFSTLLSVVANKLDLQIG 294 (749)
Q Consensus 220 ~~~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a 294 (749)
...|+++.|++.+....+. +.. .+-.....+.+.|+++.|.+.+.+..+.. |+.. ............|+.+.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 4689999999999887653 322 23334467788899999999999987643 4443 333346677789999999
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc---HHHHH-H---HHHhCCChhHHHHHHHHH
Q 004487 295 RQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVP---WTAMI-S---AYVQKGNLEEALNLFIEM 367 (749)
Q Consensus 295 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li-~---~~~~~g~~~~A~~l~~~m 367 (749)
...++.+.+.. +.+..+...+...|.+.|+++.|.+.+..+.+.++.+ +..+- . +....+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999886 5566788999999999999999999999887654322 21110 0 111111111111122222
Q ss_pred HHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcch-
Q 004487 368 CRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RNIVS- 444 (749)
Q Consensus 368 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~- 444 (749)
... .- ...+.++..+..+...+...|+.++|.+++++..+ ||...
T Consensus 252 ~~~-------------------------------~p-~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 252 WKN-------------------------------QP-RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHH-------------------------------CC-HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 111 00 00123667777888888899999999998888764 44331
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 004487 445 --WNALISACAQNGDAQATLKSFEDMVQSGYQPDSV---SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASM 519 (749)
Q Consensus 445 --~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 519 (749)
+..........++.+.+++.+++..+ ..|+.. ...++...|.+.|++++|.++|+.... +...|+...+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHH
Confidence 12222223445788899999988887 456655 445778889999999999999984332 2568999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 004487 520 VDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~ 539 (749)
...+.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-09 Score=106.49 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=148.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004487 408 MSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERN---IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVL 484 (749)
Q Consensus 408 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 484 (749)
+..+.+|-++.-.|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 4455666777777777788888888887765322 357888888899999999999888877662 121222344455
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC--C------CCC-CHHhHHHHHHH
Q 004487 485 SACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM--P------FEP-DEIMWSSVINS 554 (749)
Q Consensus 485 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~------~~p-~~~~~~~ll~~ 554 (749)
--|.+.++.+.|.++|.... ++-| |+...+-+.-.....+.+.+|..+|+.. + -++ -..+|+.|..+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 56888899999999998766 5666 4555555655666778888888888766 1 111 24567888899
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 555 CRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 555 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
|++.+.+++|+..+++.+.+.| .+..+|..++-+|...|+++.|...+.+..
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999998764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=123.72 Aligned_cols=252 Identities=13% Similarity=0.226 Sum_probs=107.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc-CC----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhccc
Q 004487 315 SLVDMYAKCGRFEEAKEIFANL-SH----ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAEL 389 (749)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 389 (749)
.+..++.+.|++++|.++++.. .. .+..-|..+.......+++++|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3466677788888888888432 22 23333666666666778888888888888765422 34445555555 577
Q ss_pred CcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004487 390 ASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP-----ERNIVSWNALISACAQNGDAQATLKS 464 (749)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 464 (749)
++++.|.++.....+.. +++..+..++..|.+.++++++.++++.+. +.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888887776554433 455666778888899999999999888744 35667888888999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 004487 465 FEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFE 542 (749)
Q Consensus 465 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 542 (749)
+++..+ ..|+ ......++..+...|+.+++.+++....+. .+.++..+..+..+|...|+.++|...+++. ...
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999999 5676 557778888999999999999999888765 2556677888999999999999999999988 434
Q ss_pred C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 004487 543 P-DEIMWSSVINSCRIHKNLEFAKKAADQLFKM 574 (749)
Q Consensus 543 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 574 (749)
| |+.+...+..++...|+.++|..+.+++++.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 5 6777788889999999999999999887653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-09 Score=107.00 Aligned_cols=199 Identities=14% Similarity=0.118 Sum_probs=165.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004487 409 SNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLS 485 (749)
Q Consensus 409 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 485 (749)
.....+..+...|.+.|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677888999999999999999997753 345678888889999999999999999998853 334567777888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHH
Q 004487 486 ACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEF 563 (749)
Q Consensus 486 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 563 (749)
.+...|++++|.+.++..............+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999998854222234556777889999999999999999887 4444 46678888889999999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 564 AKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 564 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
|...++++.+..| .+...+..++.++...|++++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYN-QTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999977 78888889999999999999999998887543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-08 Score=95.82 Aligned_cols=311 Identities=14% Similarity=0.177 Sum_probs=187.1
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCc---chhHHHHHHHHHHhcCCHHH
Q 004487 252 WNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAIS---EVKVANSLVDMYAKCGRFEE 328 (749)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~ 328 (749)
-++++++|.++|-+|.+.. +.+..+-.++-+.+.+.|..+.|.++|..+.++.--+ .....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567888888888887631 1112223345566777788888888887777653211 12334456677888888888
Q ss_pred HHHHHHhcCCCCccc---HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHh
Q 004487 329 AKEIFANLSHISTVP---WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRS 405 (749)
Q Consensus 329 A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 405 (749)
|+.+|..+.+.+... .-.|+..|-+..+|++|++.-+++.+.+-.+..+-.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 888888877644333 566788888888888888888877776544432221
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004487 406 GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERN---IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLS 482 (749)
Q Consensus 406 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 482 (749)
...|.-|...+....+++.|..++.+..+.| +..=-.+...+...|+++.|++.++...+.+..--..+...
T Consensus 180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1223445555555667777777777666322 22223344567788888888888888887542222346667
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHH-HhCCCCCCHHhHHHHHHHHHhcCCH
Q 004487 483 VLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLM-AQMPFEPDEIMWSSVINSCRIHKNL 561 (749)
Q Consensus 483 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~ 561 (749)
|..+|.+.|+.+++...+..+.+. .+....-..+.+......-.++|...+ ++..-+|+...+.-|+..-...
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d--- 328 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD--- 328 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc---
Confidence 778888888888888888877743 344333333444333333334444433 2234455544444444321111
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEE
Q 004487 562 EFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVF 629 (749)
Q Consensus 562 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f 629 (749)
+.-|++.+...++..|....++..|.+.--.-+-+.|.|
T Consensus 329 -----------------------------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 329 -----------------------------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred -----------------------------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 123456677777777877767666655544444444554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=86.18 Aligned_cols=50 Identities=40% Similarity=0.700 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhC
Q 004487 137 KDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVG 186 (749)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 186 (749)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-11 Score=84.96 Aligned_cols=50 Identities=28% Similarity=0.530 Sum_probs=47.2
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004487 440 RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSH 489 (749)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 489 (749)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-07 Score=93.86 Aligned_cols=431 Identities=16% Similarity=0.187 Sum_probs=248.2
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHH--HHHHHH--cC
Q 004487 147 TGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANA--LLDLYS--KH 222 (749)
Q Consensus 147 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y~--~~ 222 (749)
.-+.++|++++|+....++...+ +-|...+..=+-+..+.+.++.|..+.. +.+. ..+++. +=.+|+ +.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHHc
Confidence 34445556666666666555443 2233444444455555555555543222 1111 011111 234443 67
Q ss_pred CChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchH-HHHHHHHHccCChHHHHHHHH-H
Q 004487 223 DCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPF-STLLSVVANKLDLQIGRQIHT-Q 300 (749)
Q Consensus 223 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~-~ 300 (749)
+..++|...++.....|..+...-...+.+.|++++|+++|+.+.+.+..--..-. ..++.+-+. .-. .
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~---------l~~~~ 163 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA---------LQVQL 163 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---------hhHHH
Confidence 88999999988665556556666677888999999999999999776543222221 122221111 111 1
Q ss_pred HHHhcCCc--chhHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCCcc-----c-----HHHHHHHHHhCCChhHH
Q 004487 301 TIVTTAIS--EVKVANSLVDMYAKCGRFEEAKEIFANL--------SHISTV-----P-----WTAMISAYVQKGNLEEA 360 (749)
Q Consensus 301 ~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~-----~-----~~~li~~~~~~g~~~~A 360 (749)
+......| +-..+-.....++..|++.+|+++++.. .+.|.- . --.|...+...|+.++|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 11111222 1112222334567789999999998876 222211 1 23455667789999999
Q ss_pred HHHHHHHHHCCCCcCHHhHHHH---HHHhcccCcHHHH--------------HHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 004487 361 LNLFIEMCRANISADQATFASI---LRASAELASLSLG--------------KQLHSFVIRSGFMSNVFSGSALLDMYAK 423 (749)
Q Consensus 361 ~~l~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a--------------~~~~~~~~~~~~~~~~~~~~~li~~y~~ 423 (749)
.+++...+... .+|....... |.+.....++..+ ......+. ..-...+..-++++.+|.
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls-~~qk~~i~~N~~lL~l~t- 320 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS-KKQKQAIYRNNALLALFT- 320 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHh-
Confidence 99999998864 3343222221 2222222222110 11111111 111112333456666665
Q ss_pred cCCHHHHHHHHhhCCCCC-cchHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHH
Q 004487 424 SGSLKDAIQTFKEMPERN-IVSWNALISACA--QNGDAQATLKSFEDMVQSGYQPDSV--SLLSVLSACSHCGLIEEGLQ 498 (749)
Q Consensus 424 ~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~ 498 (749)
+..+.+.++-...+... ...+.+++.... +.....+|.+++...-+. .|... .....+.--...|+++.|.+
T Consensus 321 -nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 -NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 45667777777776432 334444444332 233577888888777663 45543 33344445778999999999
Q ss_pred HHH--------HhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHhHHHHHHHHHhcCCH
Q 004487 499 YFN--------SMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM--------PFEPD-EIMWSSVINSCRIHKNL 561 (749)
Q Consensus 499 ~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~ 561 (749)
++. .+. .+.-.+.+..+++.++.+.++-+-|..++.+. ..++. ..+|.-+..--.++|+-
T Consensus 398 il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 398 ILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 998 443 23445567788999999999877777776655 22222 23444444445678999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHH
Q 004487 562 EFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKK 604 (749)
Q Consensus 562 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 604 (749)
++|...++++++..| ++......++.+|++.. .+.|..+-+
T Consensus 475 ~ea~s~leel~k~n~-~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 475 EEASSLLEELVKFNP-NDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHHhCC-chHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 999999999999999 99999999999998764 455655543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.6e-08 Score=95.20 Aligned_cols=286 Identities=12% Similarity=0.116 Sum_probs=161.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 004487 253 NEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEI 332 (749)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 332 (749)
.|+|..|.++..+-.+.+-.|- ..|.....+....|+.+.+-+...++.+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 3555555555555443332221 223333334445555555555555555544445555566666667777777777776
Q ss_pred HHhcC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCC
Q 004487 333 FANLS---HISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMS 409 (749)
Q Consensus 333 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (749)
.+++. ..++........+|.+.|++.+...++..|.+.|+--|+..- ++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH-----------
Confidence 66554 345555777788888888888888888888887754443211 00
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004487 410 NVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSA 486 (749)
Q Consensus 410 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 486 (749)
...+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+- ..+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHh
Confidence 11222333333333333333334444444 234555555666667777777777777777776666552 22234
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCCHHHHH
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWSSVINSCRIHKNLEFAK 565 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~ 565 (749)
+.+.++...-++..+.-.+.++-.| ..+.+|...|.+.+.+.+|.+.|+.. ...|+...|+-+..++-+.|+.++|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 5556666666665555554444333 45556666666666666666666655 55566666666666666666666666
Q ss_pred HHHHHHhc
Q 004487 566 KAADQLFK 573 (749)
Q Consensus 566 ~~~~~~~~ 573 (749)
+..++.+.
T Consensus 382 ~~r~e~L~ 389 (400)
T COG3071 382 QVRREALL 389 (400)
T ss_pred HHHHHHHH
Confidence 66665553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.1e-06 Score=83.93 Aligned_cols=559 Identities=11% Similarity=0.126 Sum_probs=330.5
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHh--------cCCCCChHHHHHHHHHHHHhCCCCc
Q 004487 36 TAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSG--------CSEPDTANELIQVHADIIKFGYNSI 107 (749)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~g~~~~ 107 (749)
++.+|---|..... ....+...+|++.... ++-+...|..-|++ |-....+......|+..+..- ..-
T Consensus 26 svk~W~RYIe~k~~-sp~k~~~~lYERal~~--lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~m-Hkm 101 (835)
T KOG2047|consen 26 SVKCWLRYIEHKAG-SPDKQRNLLYERALKE--LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFM-HKM 101 (835)
T ss_pred hHHHHHHHHHHHcc-CChHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH-hcC
Confidence 34456555554443 3334455567766653 44444444444421 222222233333333322211 134
Q ss_pred hhHHHHHHHHhHcCCChhHHHHHHccCCC-----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004487 108 LIICNSLVDSYCKIRCLDLARRVFKEMPQ-----KDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALS 182 (749)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 182 (749)
+.+|-..+....+.|++...+..|++... ..-..|...+.-....|-++-++.+|++.++. .|. .-.--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 56788888888999999999999987543 23446999999889999999999999998874 343 3566677
Q ss_pred HHhCCCChHHHHHHHHHHHHcC------CCCChhHHHHHHHHHHcCCChH---HHHHHHccCCC--CC--cchHHHHHHH
Q 004487 183 AGVGLADIALGRQVHAFVVKTN------FVENVFVANALLDLYSKHDCVV---EARKLFGEMPE--VD--GVSYNVMITC 249 (749)
Q Consensus 183 a~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~~---~A~~~f~~~~~--~~--~~~~~~li~~ 249 (749)
-++..++++++.+.+..++... .+.+...|..+.+..++.-+.- ....+++.+.. +| ...|++|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7888999999999988876432 3456667777777776654322 34445555543 23 3479999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC----------------------hHHHHHHHHHHHHhcC-
Q 004487 250 YAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLD----------------------LQIGRQIHTQTIVTTA- 306 (749)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~g~- 306 (749)
|.+.|.+++|-++|++-.+.- .+..-|+.+..+|+.-.. ++....-++.++....
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 999999999999999876543 233345555555543222 1112222222222110
Q ss_pred ----------CcchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCcc--cHHHHHHHHHhCCChhHHHHHHHHH
Q 004487 307 ----------ISEVKVANSLVDMYAKCGRFEEAKEIFANLS-------HISTV--PWTAMISAYVQKGNLEEALNLFIEM 367 (749)
Q Consensus 307 ----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m 367 (749)
+.++..|..-+.. ..|+..+-...+.+.. ..+.. .|..+..-|-.+|+.+.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 1111112111111 1233444444444432 11111 1888888889999999999999887
Q ss_pred HHCCCCcC---HHhHHHHHHHhcccCcHHHHHHHHHHHHHh-----------CCCC------chhHHHHHHHHHHhcCCH
Q 004487 368 CRANISAD---QATFASILRASAELASLSLGKQLHSFVIRS-----------GFMS------NVFSGSALLDMYAKSGSL 427 (749)
Q Consensus 368 ~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~~------~~~~~~~li~~y~~~g~~ 427 (749)
.+...+-- ..+|..-...=.+..+++.|..+...+... +.++ +..+++..++.--..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 65432211 122222222223344556666655544321 1111 234555566666778888
Q ss_pred HHHHHHHhhCCCCCcchHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc---cCCHHHHHHHH
Q 004487 428 KDAIQTFKEMPERNIVSWNALIS---ACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSH---CGLIEEGLQYF 500 (749)
Q Consensus 428 ~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~---~g~~~~a~~~~ 500 (749)
+....+++++.+-.+.|=..+++ .+-.+.-++++.+.|++-+..=-.|+.. .|+..|.-+.+ .-.++.|..+|
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 88888888887543333333322 2345666888888888766542345543 55555544332 34689999999
Q ss_pred HHhHHhcCCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 004487 501 NSMTQKYKLRPKK--EHYASMVDILCRSGCFDEAEKLMAQM--PFEPD--EIMWSSVINSCRIHKNLEFAKKAADQLFKM 574 (749)
Q Consensus 501 ~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 574 (749)
++..+ +.+|.. ..|-.....=-+-|....|++++++. .+++. ...|+..|.--...=-+..-..+|+++++.
T Consensus 574 EqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 574 EQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 99985 666642 22333333344668888999999998 44443 457787775432222245567889999998
Q ss_pred CCCCCc-hhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 575 EKLRDA-APYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 575 ~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
-|..+. ....-.+.+-.+.|..+.|..++..-.+
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 772222 3345667788899999999998876543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-07 Score=92.77 Aligned_cols=285 Identities=13% Similarity=0.055 Sum_probs=182.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHH
Q 004487 152 EGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKL 231 (749)
Q Consensus 152 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 231 (749)
.|++.+|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-..+..+.+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888877766655333 3445556666677788888888887777765566667777777778888888888777
Q ss_pred HccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCc
Q 004487 232 FGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAIS 308 (749)
Q Consensus 232 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 308 (749)
.+...+ ++.........+|.+.|++.+...++.+|.+.|.--++.. .++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH-----------
Confidence 665543 5677788888999999999999999999988876544321 111
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 004487 309 EVKVANSLVDMYAKCGRFEEAKEIFANLSH---ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRA 385 (749)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 385 (749)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+..+ +-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence 112334444444444444444445555542 3444466677778888888888888888888776666222 223
Q ss_pred hcccCcHHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcchHHHHHHHHHhcCCHHHHH
Q 004487 386 SAELASLSLGKQLHSFVIR-SGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP--ERNIVSWNALISACAQNGDAQATL 462 (749)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 462 (749)
+.+.++.+.-.+..+...+ .+-. +..+.+|...|.+.+.+.+|...|+... .|+..+|+.+..+|.+.|+..+|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4455555544444433333 3333 3556666677777777777777776544 466666666666677777766666
Q ss_pred HHHHHHHHC
Q 004487 463 KSFEDMVQS 471 (749)
Q Consensus 463 ~~~~~m~~~ 471 (749)
+.+++....
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 666665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-08 Score=104.49 Aligned_cols=232 Identities=16% Similarity=0.198 Sum_probs=172.6
Q ss_pred HHhHHHHHHHhcccCcHHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C-
Q 004487 376 QATFASILRASAELASLSLGKQLHSFVIRS-----GF-MSNV-FSGSALLDMYAKSGSLKDAIQTFKEMPE-------R- 440 (749)
Q Consensus 376 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~- 440 (749)
..|...+...|...|+++.|..++...++. |. .|.+ ...+.+..+|...+++.+|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666778888888888888888777664 21 1222 2334577889999999999999988762 1
Q ss_pred ---CcchHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC--
Q 004487 441 ---NIVSWNALISACAQNGDAQATLKSFEDMVQ-----SGYQ-PDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYK-- 508 (749)
Q Consensus 441 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 508 (749)
-..+++.|..+|...|++++|...+++..+ .|.. |... -++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 234677888889999999998888877654 2222 2333 455666679999999999999988765543
Q ss_pred CCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhc-
Q 004487 509 LRPK----KEHYASMVDILCRSGCFDEAEKLMAQM---------PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFK- 573 (749)
Q Consensus 509 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 573 (749)
..++ ..+++.|...|...|++++|+++++++ ...+. ...++.|..+|.+.++.++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 367899999999999999999999887 11222 45667788899999999999998887654
Q ss_pred ---CCC--CCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 574 ---MEK--LRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 574 ---~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
.+| ..-..+|..|+.+|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344 1345778899999999999999999988874
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.1e-07 Score=86.59 Aligned_cols=304 Identities=12% Similarity=0.025 Sum_probs=209.4
Q ss_pred CCCcchHHHHHHHHHc--cCChHHHHHHH-HHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHH-
Q 004487 272 DRSQFPFSTLLSVVAN--KLDLQIGRQIH-TQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAM- 347 (749)
Q Consensus 272 ~p~~~t~~~ll~~~~~--~~~~~~a~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l- 347 (749)
.|+..+...-+.+++. .++-..+.+.+ ..-....++.++....++.+.|...|+.++|...|++..-.|+.+...|
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 3444444444444432 23333333333 3333455788899999999999999999999999998876555543322
Q ss_pred --HHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 004487 348 --ISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSG 425 (749)
Q Consensus 348 --i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 425 (749)
.--+.+.|++++...+...+.... .-+...|..-....-...+++.|..+-+..++..- .+...+-.-...+...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhcc
Confidence 233467888888888777775531 11222222222233445677777777776666542 23333333345677889
Q ss_pred CHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHH
Q 004487 426 SLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVL-SACS-HCGLIEEGLQYF 500 (749)
Q Consensus 426 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~ 500 (749)
++++|.-.|+... .-+..+|.-|+..|...|.+.+|..+-+..... ++-+..+...+. ..|. ....-++|.+++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 9999999998765 357889999999999999999999888776653 344555555442 2333 333457888888
Q ss_pred HHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 004487 501 NSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLR 578 (749)
Q Consensus 501 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 578 (749)
++-. .+.|+ ....+.+..++.+.|..+++..++++. ...||....+.|....+..+.+.+|...|..++.++| .
T Consensus 428 ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP-~ 503 (564)
T KOG1174|consen 428 EKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP-K 503 (564)
T ss_pred Hhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc-c
Confidence 8665 46776 345667788999999999999999887 6678999999999999999999999999999999999 5
Q ss_pred Cchh
Q 004487 579 DAAP 582 (749)
Q Consensus 579 ~~~~ 582 (749)
|..+
T Consensus 504 ~~~s 507 (564)
T KOG1174|consen 504 SKRT 507 (564)
T ss_pred chHH
Confidence 5443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.2e-06 Score=90.30 Aligned_cols=570 Identities=14% Similarity=0.143 Sum_probs=308.0
Q ss_pred hHHHHHHHHcCCChHHHHHHHhcC-CCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcch------------
Q 004487 9 TNMLISGYVKSGNLATARELFNSM-VDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVT------------ 75 (749)
Q Consensus 9 ~~~ll~~~~~~g~~~~A~~~f~~~-~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~------------ 75 (749)
-+..+..|+.+|.++++.-...+. ..|| |-.+|+...+ -.++.+.++...|.+..+...|...
T Consensus 484 p~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQ 559 (1666)
T KOG0985|consen 484 PAKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQ 559 (1666)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhh
Confidence 466788999999999988777665 3344 3445565555 5677788777777664221112211
Q ss_pred --HHHHHHhcCCCCChHHHH---HHHHHHHHhCCC----------CchhHHHHHHHHhHcCCChhHHHHHHccCCC--CC
Q 004487 76 --FATLLSGCSEPDTANELI---QVHADIIKFGYN----------SILIICNSLVDSYCKIRCLDLARRVFKEMPQ--KD 138 (749)
Q Consensus 76 --~~~ll~~~~~~~~~~~a~---~~~~~~~~~g~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~ 138 (749)
-..+|.+ .+...++.+. .+++.-...+++ .+.+-+..+...|.+.|-...|++.+..+.. +.
T Consensus 560 q~TSFLLda-LK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~ 638 (1666)
T KOG0985|consen 560 QCTSFLLDA-LKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRV 638 (1666)
T ss_pred hhHHHHHHH-hcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHH
Confidence 1111222 1222232221 222222222211 1112255667778888999999988877654 21
Q ss_pred cchHH----HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHH-----------c
Q 004487 139 SVSFN----ALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVK-----------T 203 (749)
Q Consensus 139 ~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-----------~ 203 (749)
++.-+ --+..|.-.-.++.+++.++.|...+++-+..+...+..-+...-..+...++|+.... -
T Consensus 639 vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSiv 718 (1666)
T KOG0985|consen 639 VVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIV 718 (1666)
T ss_pred HHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHh
Confidence 11111 01234555567889999999999988888877766666555544333444444443322 1
Q ss_pred CCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC---------------C----------------CcchH------HHH
Q 004487 204 NFVENVFVANALLDLYSKHDCVVEARKLFGEMPE---------------V----------------DGVSY------NVM 246 (749)
Q Consensus 204 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---------------~----------------~~~~~------~~l 246 (749)
++..|..+.-..|.+.++.|++.+.+++-++-.- . |.+.| --.
T Consensus 719 n~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~ky 798 (1666)
T KOG0985|consen 719 NFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKY 798 (1666)
T ss_pred ccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHH
Confidence 2455666677889999999999998888765421 1 11111 112
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC-----------CcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHH
Q 004487 247 ITCYAWNEQYKESLKLFRELQFTRFDR-----------SQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANS 315 (749)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 315 (749)
|..|.+.=++...-.+...+..-.... ..+...-+..-+.+.+.+..-...++..+..| ..|+.++|+
T Consensus 799 IE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnA 877 (1666)
T KOG0985|consen 799 IEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNA 877 (1666)
T ss_pred HHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhh
Confidence 344444433333222222222111000 01111122222333444444445555555555 446777888
Q ss_pred HHHHHHhcCCHHHH----------HHHHHhcCCCCccc-------------------HHHHHHH----HHhCCCh---hH
Q 004487 316 LVDMYAKCGRFEEA----------KEIFANLSHISTVP-------------------WTAMISA----YVQKGNL---EE 359 (749)
Q Consensus 316 li~~~~~~g~~~~A----------~~~~~~~~~~~~~~-------------------~~~li~~----~~~~g~~---~~ 359 (749)
|...|...++-.+- .-+=+-.+++|+.. -|+|... +....+. .+
T Consensus 878 laKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~ 957 (1666)
T KOG0985|consen 878 LAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAK 957 (1666)
T ss_pred hhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHH
Confidence 77777654331110 00000001111100 0111111 1111111 11
Q ss_pred H--------HHHHHHHHHCCCC--cCHHhHHHHHHHhcccCcHHHHHHHHHHHHHh--CCCCchhHHHHHH---------
Q 004487 360 A--------LNLFIEMCRANIS--ADQATFASILRASAELASLSLGKQLHSFVIRS--GFMSNVFSGSALL--------- 418 (749)
Q Consensus 360 A--------~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li--------- 418 (749)
. ..+.++....++. -|+...+..+.++...+-..+-.++++.++-. .+..+...-|.|+
T Consensus 958 VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~t 1037 (1666)
T KOG0985|consen 958 VLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRT 1037 (1666)
T ss_pred HHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChH
Confidence 1 1122222222211 12223333333333333333333333322211 0111111111111
Q ss_pred ------------------HHHHhcCCHHHHHHHHhhCCC-------------------------CCcchHHHHHHHHHhc
Q 004487 419 ------------------DMYAKSGSLKDAIQTFKEMPE-------------------------RNIVSWNALISACAQN 455 (749)
Q Consensus 419 ------------------~~y~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~ 455 (749)
......+-+++|..+|+.... ..+..|..+..+-.+.
T Consensus 1038 rVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1038 RVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhc
Confidence 111222334455555543320 2345799999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004487 456 GDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKL 535 (749)
Q Consensus 456 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 535 (749)
|...+|++-|-+. -|...|..++.++++.|.+++-.+++...+++ .-+|..+ +.|+-+|++.+++.|-+++
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHH
Confidence 9999998877542 35668999999999999999999999766554 6666655 4689999999999998888
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHH
Q 004487 536 MAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAM 606 (749)
Q Consensus 536 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 606 (749)
+. -|+..-......-|...|.++.|.-+|. +...|..|+..+...|.+..|...-++.
T Consensus 1189 i~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1189 IA----GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hc----CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 85 3777777888899999999999988874 5667778888888888888887665544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-08 Score=92.00 Aligned_cols=220 Identities=10% Similarity=0.131 Sum_probs=133.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHcCCChHH
Q 004487 152 EGLNEEAIKLFVEMQHLGFKPS-DFTFAAALSAGVGLADIALGRQVHAFVVKTNFVE---NVFVANALLDLYSKHDCVVE 227 (749)
Q Consensus 152 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~~~ 227 (749)
+.++++|+++|-+|.+. .|. ..+-.++-+-+.+.|..+.|..+|+.+.++.--+ -....-.|..-|.+.|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46777777777777763 221 2222344445566677777777777766543211 12344567777888999999
Q ss_pred HHHHHccCCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHh
Q 004487 228 ARKLFGEMPEVDGV---SYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVT 304 (749)
Q Consensus 228 A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 304 (749)
|+.+|..+.+.+.. +.-.|+..|-+..+|++|++.-+++...+..+..+-..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA------------------------- 180 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA------------------------- 180 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH-------------------------
Confidence 99999888774443 45567888999999999999998887766554433221
Q ss_pred cCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc---HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHH
Q 004487 305 TAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVP---WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFAS 381 (749)
Q Consensus 305 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 381 (749)
..|..|...+....+.+.|...+.+..+.|... --.+-..+...|+++.|.+.++...+.+..--..+...
T Consensus 181 ------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 181 ------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred ------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 123344445555666777777776665433332 22233556677777777777777766543333334444
Q ss_pred HHHHhcccCcHHHHHHHHHHHHH
Q 004487 382 ILRASAELASLSLGKQLHSFVIR 404 (749)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~~~~ 404 (749)
+..+|.+.|+.+++...+..+.+
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555555555555554444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-06 Score=91.03 Aligned_cols=491 Identities=15% Similarity=0.136 Sum_probs=294.2
Q ss_pred CCChHHHHHHHhcCCC-CCcc-hHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHHH
Q 004487 19 SGNLATARELFNSMVD-RTAV-SWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVH 96 (749)
Q Consensus 19 ~g~~~~A~~~f~~~~~-~~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 96 (749)
.|+++.|..+++.... |+.. .|..+...-...|+..-|.+.|. ..|++..++.+|
T Consensus 457 ~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfa-----------------------ai~dvak~r~lh 513 (1636)
T KOG3616|consen 457 DGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFA-----------------------AIGDVAKARFLH 513 (1636)
T ss_pred cCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHH-----------------------HHHHHHHHHHHH
Confidence 4566666666665532 3333 35554444444454444444333 334555666665
Q ss_pred HHHH-------HhC-CCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004487 97 ADII-------KFG-YNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHL 168 (749)
Q Consensus 97 ~~~~-------~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 168 (749)
+... +.| -..+.+-..+++.++. .++.+|+.+|-+-. + -..-|..|....++++|+.+-+. .
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn--~---te~aigmy~~lhkwde~i~lae~---~ 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN--A---TEEAIGMYQELHKWDEAIALAEA---K 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc--c---HHHHHHHHHHHHhHHHHHHHHHh---c
Confidence 5432 122 1223333344444433 46778888775421 1 22346666677778888877543 2
Q ss_pred CCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccC--CCCCcchHHHH
Q 004487 169 GFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEM--PEVDGVSYNVM 246 (749)
Q Consensus 169 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~l 246 (749)
|.+.-...-.+-++++...|+-+.|-++- .+....-+-|..|.|.|....|.+.-..- ...|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 22111122233445555555544443321 11222345688899999888877664322 22455556666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchh-HHHHHHHHHHhcCC
Q 004487 247 ITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVK-VANSLVDMYAKCGR 325 (749)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~ 325 (749)
..++.+...+++|-++|+++.. +...+..+.+...+..|.++-... ++..+. .-..-.+-+...|+
T Consensus 655 a~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHh
Confidence 6777777778888888887642 222333333333334444433222 121111 11223334456677
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHh
Q 004487 326 FEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRS 405 (749)
Q Consensus 326 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 405 (749)
++.|...|-+... .-.-|.+-....++.+|+.+++.++.... -..-|..+..-|+..|+++.|++++-..
T Consensus 722 ~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~--- 791 (1636)
T KOG3616|consen 722 LDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA--- 791 (1636)
T ss_pred HHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---
Confidence 8888777754321 12234566778899999999998887532 3345667778899999999999988532
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004487 406 GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPER--NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSV 483 (749)
Q Consensus 406 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 483 (749)
..++--|+||.+.|++++|.++-.+...| .+.+|-+-..-+-.+|++.+|.++|-... .|+. .
T Consensus 792 ------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----a 856 (1636)
T KOG3616|consen 792 ------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----A 856 (1636)
T ss_pred ------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----H
Confidence 23567799999999999999998877654 45566666667788999999998886542 3553 3
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 004487 484 LSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEF 563 (749)
Q Consensus 484 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 563 (749)
+..|-+.|..++.+++..+-.- ..-.++.-.+..-|...|++.+|++-|-+.+ -|.+.++.|...+-+++
T Consensus 857 iqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWED 926 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHH
Confidence 5678889999998887754321 1222344556777888999999999887654 47778888888888887
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHH
Q 004487 564 AKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKA 605 (749)
Q Consensus 564 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 605 (749)
|-++.+ ..+. .|..-.+...++-+-.| +.|.+++++
T Consensus 927 ayriak---tegg-~n~~k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 927 AYRIAK---TEGG-ANAEKHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHHHh---cccc-ccHHHHHHHHHHHhhCc--HHHHHHHHh
Confidence 766654 3333 45555555555544444 577777776
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-06 Score=87.69 Aligned_cols=218 Identities=12% Similarity=0.083 Sum_probs=168.7
Q ss_pred HhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004487 352 VQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAI 431 (749)
Q Consensus 352 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 431 (749)
.-.|+.-.|...|+..+.....++.. |.-+-..+....+.++..+.|....+.+. -++.+|.--..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHH
Confidence 34688889999999988765444332 66666678888888999999988888763 35667777778888889999999
Q ss_pred HHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 004487 432 QTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYK 508 (749)
Q Consensus 432 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 508 (749)
.=|++... .++..|-.+-.+.-+.++++++...|++.+.. ++--...|+.....+...+++++|.+.|+....
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--- 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--- 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---
Confidence 99998874 34566767777777888999999999999884 444455888889999999999999999998773
Q ss_pred CCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 509 LRPKK---------EHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 509 ~~p~~---------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
+.|+. .+.-+++- +.-.+++.+|.+++++. .+.|. ...+.+|...-.+.|++++|+++|++...+..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45541 11112221 22458999999999998 66674 77889999999999999999999999877654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.3e-08 Score=107.78 Aligned_cols=244 Identities=11% Similarity=0.051 Sum_probs=174.7
Q ss_pred ChhHHHHHHHHHHHCCCCcCHH-hHHHHHHHhc---------ccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 004487 356 NLEEALNLFIEMCRANISADQA-TFASILRASA---------ELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSG 425 (749)
Q Consensus 356 ~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 425 (749)
..++|+.+|++..+. .|+.. .+..+..++. ..++.+.|...++.+++.. +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 346777777777653 45432 3333322221 3345778888888877765 335677778888899999
Q ss_pred CHHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHH
Q 004487 426 SLKDAIQTFKEMPE--R-NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFN 501 (749)
Q Consensus 426 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 501 (749)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998763 3 355788888899999999999999999998 556643 33344555667899999999998
Q ss_pred HhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 004487 502 SMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLR 578 (749)
Q Consensus 502 ~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 578 (749)
+.... ..| +...+..+..+|...|++++|...+++. +..|+ ...++.+...+...| +.|...++++++... .
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~-~ 505 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ-R 505 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh-H
Confidence 87753 234 3455777888899999999999999987 55555 444555555667777 488888888777554 3
Q ss_pred CchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 579 DAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
....+..+..+|+-.|+-+.+..+ +++.+.+
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 344444488888889998888777 7776654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-06 Score=81.67 Aligned_cols=151 Identities=19% Similarity=0.164 Sum_probs=95.5
Q ss_pred HHHHHHHHhhCCC-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 004487 427 LKDAIQTFKEMPE-----RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFN 501 (749)
Q Consensus 427 ~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 501 (749)
+.-|.+.|+-..+ ..+.--.+|.+.+.-..++++.+-.+.....- +.-|...-..+..|.+..|.+.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 4445555554332 22333455666666666677777777766653 33333333456678888888888888886
Q ss_pred HhHHhcCCC-CChHHHHH-HHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHhcCCCCC
Q 004487 502 SMTQKYKLR-PKKEHYAS-MVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVI-NSCRIHKNLEFAKKAADQLFKMEKLR 578 (749)
Q Consensus 502 ~m~~~~~~~-p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~ 578 (749)
.+. +.+ .+..+|.+ |...|.+++..+-|.+++-++.-..+..+.-.+| .-|.+.+.+=-|-++|+.+-.++|
T Consensus 418 ~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-- 492 (557)
T KOG3785|consen 418 RIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-- 492 (557)
T ss_pred hhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC--
Confidence 654 222 34455554 4577888888888888888875444455444444 458888888888888888888887
Q ss_pred CchhH
Q 004487 579 DAAPY 583 (749)
Q Consensus 579 ~~~~~ 583 (749)
++..|
T Consensus 493 ~pEnW 497 (557)
T KOG3785|consen 493 TPENW 497 (557)
T ss_pred Ccccc
Confidence 44444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-08 Score=97.88 Aligned_cols=211 Identities=13% Similarity=0.076 Sum_probs=150.1
Q ss_pred CcHHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHH
Q 004487 390 ASLSLGKQLHSFVIRSG-FMS--NVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLK 463 (749)
Q Consensus 390 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 463 (749)
+..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555555432 222 245577788889999999999999988763 456789999999999999999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--C
Q 004487 464 SFEDMVQSGYQPDS-VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM--P 540 (749)
Q Consensus 464 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~ 540 (749)
.|++..+ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 66764 5778888889999999999999998875 3565432222233455678899999999665 2
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh-------cCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 541 FEPDEIMWSSVINSCRIHKNLEFAKKAADQLF-------KMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 541 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
..|+. |.. .......|+...+ ..++.+. ++.| ....+|..++.+|...|++++|...+++..+..
T Consensus 195 ~~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~-~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAE-RLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33333 331 1222334555443 2444443 3444 556789999999999999999999999987654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-06 Score=88.84 Aligned_cols=281 Identities=14% Similarity=0.092 Sum_probs=149.5
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHH
Q 004487 240 GVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDM 319 (749)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 319 (749)
+...-.-..-+...+++.+..++++...+.. ++....+..=|.++...|+...-.-+-..+++. .+....+|-++.-.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 3333344445556666667776666664431 222222322333333444433322222222222 24455566666667
Q ss_pred HHhcCCHHHHHHHHHhcCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHH
Q 004487 320 YAKCGRFEEAKEIFANLSHIST---VPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGK 396 (749)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 396 (749)
|.-.|...+|++.|......|. ..|-....+|+-.|..++|+..+...-+.- +-...-+.-+---|.+.+.++.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHH
Confidence 7777888888888877654332 338888888888888888888776665421 111111111222344455555555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC----C
Q 004487 397 QLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQS----G 472 (749)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g 472 (749)
+.+.+..... +.|+.+.+-+.-+..+.+ .+.+|..+|+..+.. +
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~-------------------------------~y~~A~~~f~~~l~~ik~~~ 448 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYE-------------------------------EYPEALKYFQKALEVIKSVL 448 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHh-------------------------------hhHHHHHHHHHHHHHhhhcc
Confidence 5554443322 234444444444444444 444555444444310 0
Q ss_pred -CC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHH
Q 004487 473 -YQ-PDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWS 549 (749)
Q Consensus 473 -~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 549 (749)
-. --..+++.|..+|.+.+.+++|+..++..... .+.+..+++++.-.|...|+++.|.+.|.+. ..+||..+-.
T Consensus 449 ~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~ 526 (611)
T KOG1173|consen 449 NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS 526 (611)
T ss_pred ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence 01 12345666666677777777777777666532 3345666666666677777777777777665 6667666666
Q ss_pred HHHHHHHh
Q 004487 550 SVINSCRI 557 (749)
Q Consensus 550 ~ll~~~~~ 557 (749)
.+++.+..
T Consensus 527 ~lL~~aie 534 (611)
T KOG1173|consen 527 ELLKLAIE 534 (611)
T ss_pred HHHHHHHH
Confidence 66655443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.2e-05 Score=78.34 Aligned_cols=194 Identities=12% Similarity=0.162 Sum_probs=136.1
Q ss_pred HHHcCCChHHHHHHHhcCCCCCcch--HHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHH
Q 004487 15 GYVKSGNLATARELFNSMVDRTAVS--WTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANEL 92 (749)
Q Consensus 15 ~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a 92 (749)
+-.....+.+|+.+++.++.+++.+ |..+..-|+..|+++.|.++|-+.- .|+-.|..|.+.|.|..|
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHH
Confidence 3345567788888888887766554 6677778888888888888886531 245667778888888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 004487 93 IQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKP 172 (749)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 172 (749)
..+-+.. .|.+.....|-+-..-+-+.|++.+|++++-.+..|+. -|..|-+.|..+..+++..+-... .
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~ 880 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---H 880 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---h
Confidence 7765543 34455555666666666778888888888888887775 377788888888888877664321 1
Q ss_pred ChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC
Q 004487 173 SDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE 237 (749)
Q Consensus 173 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 237 (749)
-..|-..+.+-+-..|++..|..-+-... -|.+-++||-..+.+++|.++-..-..
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg 936 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGG 936 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhcccc
Confidence 13455556666777888888876654332 356778899888999999888765443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.3e-06 Score=86.62 Aligned_cols=398 Identities=12% Similarity=0.091 Sum_probs=255.5
Q ss_pred cCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHH
Q 004487 203 TNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFS 279 (749)
Q Consensus 203 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 279 (749)
..+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+-..|.-.|.-..|+.++++-......|+..+--
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567889999999999999999999999988754 345579999999999999999999999876655445544433
Q ss_pred HHH-HHHH-ccCChHHHHHHHHHHHHh--cC--CcchhHHHHHHHHHHhc----C-------CHHHHHHHHHhcCCCCcc
Q 004487 280 TLL-SVVA-NKLDLQIGRQIHTQTIVT--TA--ISEVKVANSLVDMYAKC----G-------RFEEAKEIFANLSHISTV 342 (749)
Q Consensus 280 ~ll-~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~----g-------~~~~A~~~~~~~~~~~~~ 342 (749)
.+. ..|. +.+..+.+...-..+++. +. ......+-.+.-+|... . ...++...+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333 3343 567777777776666662 21 12233444444444432 1 133455566666443322
Q ss_pred cHHH---HHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHh-CCCCchhHHHHHH
Q 004487 343 PWTA---MISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRS-GFMSNVFSGSALL 418 (749)
Q Consensus 343 ~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li 418 (749)
-++. +.--|+-.++.+.|++..++....+-.-+...|..+.-.++..+++..|+.+.+..... |......... +
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~--~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK--I 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh--h
Confidence 2222 23346677889999999999988766777888888887888888999998887765542 2211000000 0
Q ss_pred HHHHhcCCHHHHHHH--------------------------HhhCC----C-CC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 004487 419 DMYAKSGSLKDAIQT--------------------------FKEMP----E-RN-IVSWNALISACAQNGDAQATLKSFE 466 (749)
Q Consensus 419 ~~y~~~g~~~~A~~~--------------------------~~~~~----~-~~-~~~~~~li~~~~~~g~~~~A~~~~~ 466 (749)
..-..-++.++|... +..+. + .+ +.++..+..-....+ ..+..-..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~ 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc
Confidence 001112333333222 22221 0 01 122222221111111 00000000
Q ss_pred HHHHCCCCC--CH------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004487 467 DMVQSGYQP--DS------VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMA 537 (749)
Q Consensus 467 ~m~~~g~~p--~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 537 (749)
|...-+.| +. ..|......+...+..++|...+.+.. ++.| ....|.-....+...|.++||.+.|.
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 11111222 21 234445556788888999988777665 3444 44566666788889999999999988
Q ss_pred hC-CCCCC-HHhHHHHHHHHHhcCCHHHHHH--HHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 538 QM-PFEPD-EIMWSSVINSCRIHKNLEFAKK--AADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 538 ~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.. -+.|+ +.+..++...+.+.|+-..|.. ++..+++.+| .++..|..|+.++...|+.++|.+.+....+-
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 77 67786 6778888888999999888888 9999999999 99999999999999999999999999987654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-07 Score=92.09 Aligned_cols=194 Identities=18% Similarity=0.200 Sum_probs=117.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 004487 344 WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAK 423 (749)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 423 (749)
+..+...|...|++++|.+.+++..+.. |+ +...+..+...|..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~~~~ 77 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALYYQQ 77 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHHHHH
Confidence 6667777778888888888887776532 22 22333444455555
Q ss_pred cCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 004487 424 SGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQY 499 (749)
Q Consensus 424 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 499 (749)
.|++++|.+.|++.. ..+...+..+...+...|++++|.+.|++.......| +...+..+..++...|++++|.+.
T Consensus 78 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 78 LGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555443 2233455556666666677777777777766532222 223455555666777777777777
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 004487 500 FNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKME 575 (749)
Q Consensus 500 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 575 (749)
++..... .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+....
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7766643 1223456666777777777777777777665 2223 34555556666677777777777777665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-07 Score=99.27 Aligned_cols=236 Identities=17% Similarity=0.225 Sum_probs=152.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------Cccc-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHh
Q 004487 310 VKVANSLVDMYAKCGRFEEAKEIFANLSHI----------STVP-WTAMISAYVQKGNLEEALNLFIEMCRANISADQAT 378 (749)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 378 (749)
..+...|..+|...|+++.|..+++...+. .+.+ .+.+...|...+++.+|..+|+++..-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------- 270 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------- 270 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 345555777888888888888877665421 1111 334555677778888888888777541
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----------CCCcc-hHHH
Q 004487 379 FASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP----------ERNIV-SWNA 447 (749)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----------~~~~~-~~~~ 447 (749)
.........+.-..+++.|..+|.+.|++++|...++... .+.+. ..+.
T Consensus 271 --------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 271 --------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred --------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 0000000111112334445555666666655555554432 12222 3455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CCC-ChH
Q 004487 448 LISACAQNGDAQATLKSFEDMVQS---GYQPDS----VSLLSVLSACSHCGLIEEGLQYFNSMTQKY----K-LRP-KKE 514 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p-~~~ 514 (749)
++..+...+++++|..++....+. -+.++. .++..|...|.+.|++++|.++|++..... + ..+ ...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 666677788888888888765442 123333 378888889999999999999998876542 1 122 234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004487 515 HYASMVDILCRSGCFDEAEKLMAQM--------PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFK 573 (749)
Q Consensus 515 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 573 (749)
.++.|...|.+.+.+.+|.++|.+. +..|+ ..+|..|...|...|++|.|+++.+.+..
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 6677888899999999888888775 33454 57899999999999999999999988863
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-05 Score=77.15 Aligned_cols=192 Identities=16% Similarity=0.178 Sum_probs=128.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 004487 415 SALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGD-------AQATLKSFEDMVQSGYQPDSV-SLLSVLSA 486 (749)
Q Consensus 415 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a 486 (749)
-.|+-.|.+.+++.+|..+.+++....+.-|-.-.-.++..|+ ..-|.+.|+-.-+++..-|.+ --.++.++
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 3466678999999999999998875444444322222344443 344555555544555544433 34455566
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHhHHHHHHHH-HhcCCHHH
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFE-PDEIMWSSVINSC-RIHKNLEF 563 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~-~~~g~~~~ 563 (749)
+.-..++++.+-+++.+.. |-...|...+ .+..+++..|.+.+|+++|-+. +.+ .|..+|.+++.-| .+.+..+.
T Consensus 369 fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 6667788999999988873 4444555554 4788999999999999999887 222 4778888877765 56677777
Q ss_pred HHHHHHHHhcCCCCC-CchhHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 004487 564 AKKAADQLFKMEKLR-DAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 564 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
|..++ ++.+... .-...-.+++-|..++.+--|.+.+..+.....
T Consensus 447 AW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 447 AWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 66554 4444312 234455678889999999999999988866543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-07 Score=104.63 Aligned_cols=211 Identities=17% Similarity=0.095 Sum_probs=160.5
Q ss_pred CcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCC
Q 004487 390 ASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYA---------KSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGD 457 (749)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 457 (749)
++++.|...++..++.... +...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3467888888888775422 3445555555443 23458899999998773 356678888888899999
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHHcCCHHHHHHH
Q 004487 458 AQATLKSFEDMVQSGYQPDS-VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKE-HYASMVDILCRSGCFDEAEKL 535 (749)
Q Consensus 458 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~ 535 (749)
+++|...|++..+ ..|+. ..+..+..++...|++++|...++...+ +.|+.. .+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 55764 4777788889999999999999999884 456532 333445557778999999999
Q ss_pred HHhC--CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 536 MAQM--PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 536 ~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
+++. ...|+ +..+..+...+...|+.++|...++++....| .+......+...|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9887 22354 45566777778899999999999999988888 77777888888888888 5888877776554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=0.00014 Score=79.01 Aligned_cols=113 Identities=14% Similarity=0.215 Sum_probs=77.7
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 004487 342 VPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMY 421 (749)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 421 (749)
..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.++.-..++..+.+..-+|.+. +.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 34888888888888888888776432 367788888999999999988888888887777666554 6788888
Q ss_pred HhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004487 422 AKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSF 465 (749)
Q Consensus 422 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (749)
++.+++.+-++++. .||+.-...+.+-|...|.++.|.-+|
T Consensus 1177 Akt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 88888887766543 234433334444444444444444333
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-07 Score=85.17 Aligned_cols=161 Identities=14% Similarity=0.163 Sum_probs=134.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHH
Q 004487 445 WNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDI 522 (749)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 522 (749)
...|.-+|.+.|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+... .+.| +.++.|...--
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 44567788899999999999999988 567655 88888888999999999999998877 3456 45677888888
Q ss_pred HHHcCCHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchh
Q 004487 523 LCRSGCFDEAEKLMAQMPFEPD----EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWES 598 (749)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 598 (749)
+|..|++++|...|++.-..|+ ..+|..+.....+.|+.+.|...+++.++.+| ..+.+...+.......|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchH
Confidence 8999999999999988833332 56788887777889999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 004487 599 VSQVKKAMRERGV 611 (749)
Q Consensus 599 a~~~~~~m~~~g~ 611 (749)
|..+++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.9e-05 Score=81.32 Aligned_cols=492 Identities=15% Similarity=0.085 Sum_probs=258.6
Q ss_pred cCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcC---CCCChHHH-------------------HH----HHHHHHHh
Q 004487 49 QKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCS---EPDTANEL-------------------IQ----VHADIIKF 102 (749)
Q Consensus 49 ~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~---~~~~~~~a-------------------~~----~~~~~~~~ 102 (749)
..++.++++.-+...... +...+..++..+..... ..++.++. .. .+.++...
T Consensus 239 ~~~~~~~~i~s~~~~l~~-~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~ 317 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLR-SWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLK 317 (799)
T ss_pred CCCCchHHHHhhhHHhhc-ccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Confidence 445566666666666655 56666666666554432 23333333 11 11112222
Q ss_pred CCCCchhHHHHHHHHhHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHH
Q 004487 103 GYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQ---KDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPS-DFTFA 178 (749)
Q Consensus 103 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 178 (749)
.++-|..+|-.|.-+...+|+++.+-+.|++... .....|+.+-..|.-.|.-..|+.+++.-....-.|+ ...+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3445666777777777777777777777766543 2334577777777777777777777765443221232 22232
Q ss_pred HHHHHHh-CCCChHHHHHHHHHHHHcC--C--CCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhc
Q 004487 179 AALSAGV-GLADIALGRQVHAFVVKTN--F--VENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWN 253 (749)
Q Consensus 179 ~ll~a~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 253 (749)
..-+.|. +.+..+.+...-..++... . ......+-.+.-+|...- ....++. -+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~s------eR~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKS------ERD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChH------HHH
Confidence 2223333 2233333333333333210 0 001111111211221100 0000000 011
Q ss_pred CChhHHHHHHHHHHHCC-CCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 004487 254 EQYKESLKLFRELQFTR-FDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEI 332 (749)
Q Consensus 254 g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 332 (749)
....++++.+++..+.+ -.|+..-|.++- ++..++++.|.+...+.++.+-..+...+..|.-.+.-.+++.+|+.+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 12345666666664432 334333333332 334556677777777777766666666676666667777777777777
Q ss_pred HHhcCCCCcccHH---HHHHHHHhCCChhHHHHHHHHHHHCC--CCcCHHhHHHHHHHhcccCcHHHHHHHHHHHH--Hh
Q 004487 333 FANLSHISTVPWT---AMISAYVQKGNLEEALNLFIEMCRAN--ISADQATFASILRASAELASLSLGKQLHSFVI--RS 405 (749)
Q Consensus 333 ~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~--~~ 405 (749)
.+...+.-...++ .-+..-..-++.++|+.+...+..-- ..|-..+ ++-....+....+. ..
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~lk~~l~la~~ 604 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLRLKAGLHLALS 604 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhhhhcccccCcc
Confidence 6654321111111 11222223566666666665554310 0000000 00000000000000 00
Q ss_pred CCCCchhHHHHHHHHHH---hcCCHHHHHHHHhhCCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004487 406 GFMSNVFSGSALLDMYA---KSGSLKDAIQTFKEMPERN------IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD 476 (749)
Q Consensus 406 ~~~~~~~~~~~li~~y~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 476 (749)
.....+.++..+..... +.-..+.....+...+.|+ ...|......+...++.++|...+.+... +.|-
T Consensus 605 q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l 682 (799)
T KOG4162|consen 605 QPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPL 682 (799)
T ss_pred cccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchh
Confidence 11111222222222221 1111111122222222333 23466667778888999999888877766 4444
Q ss_pred H-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHH--HHHhC-CCCC-CHHhHHH
Q 004487 477 S-VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEK--LMAQM-PFEP-DEIMWSS 550 (749)
Q Consensus 477 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ 550 (749)
. ..|......+...|.+++|.+.|.... .+.|+ +....++..++.+.|+..-|.+ ++..+ .+.| +...|-.
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3 355555567788899999999998766 56775 5677889999999998777777 77766 6667 5889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLRDA 580 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 580 (749)
|.....+.|+.+.|...|+.+.++++ .++
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~P 788 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEE-SNP 788 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhcc-CCC
Confidence 99999999999999999999999988 444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4e-05 Score=79.64 Aligned_cols=424 Identities=13% Similarity=0.076 Sum_probs=224.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHH
Q 004487 86 PDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQ---KDSVSFNALITGFAKEGLNEEAIKLF 162 (749)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 162 (749)
.+++..+..+.+.+++. .+....+....--.+...|+-++|......-.+ ++.+.|..+.-.+-...++++|+..|
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 34555566666666652 221222222111123345788888877766554 45678999888888889999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCC---CCC
Q 004487 163 VEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMP---EVD 239 (749)
Q Consensus 163 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~ 239 (749)
+..... .||.... +..|.-.-+..|+++-....-.... ...
T Consensus 99 ~nAl~~--~~dN~qi----------------------------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 99 RNALKI--EKDNLQI----------------------------------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHhc--CCCcHHH----------------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 988764 4543221 1111111111222222211111111 124
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 004487 240 GVSYNVMITCYAWNEQYKESLKLFRELQFTR-FDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVD 318 (749)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 318 (749)
...|..+..++.-.|++..|..++++..+.. -.|+...+....... --..
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L-----------------------------y~n~ 193 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL-----------------------------YQNQ 193 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH-----------------------------HHHH
Confidence 5578888888889999999999998886654 244444443221111 0112
Q ss_pred HHHhcCCHHHHHHHHHhcCCC--Cccc-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcc--cCcHH
Q 004487 319 MYAKCGRFEEAKEIFANLSHI--STVP-WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAE--LASLS 393 (749)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~ 393 (749)
...+.|..+.|.+.+...+.. |-.. --+....+.+.++.++|..++..+... .||..-|...+..+.- .+..+
T Consensus 194 i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 194 ILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHH
Confidence 245667777777776655431 1111 234456677889999999999998875 5777776655544331 11111
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHCC
Q 004487 394 LGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNG-DAQATLKSFEDMVQSG 472 (749)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g 472 (749)
....++....+.-.... .|--...+ ..... -.+..-+.+..+.+.|
T Consensus 272 ~lk~ly~~ls~~y~r~e----------------------------~p~Rlpls-----vl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 272 ALKALYAILSEKYPRHE----------------------------CPRRLPLS-----VLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHHHHhhcCcccc----------------------------cchhccHH-----HhCcchhHHHHHHHHHHHhhcC
Confidence 11122222211100000 00000000 01111 1223334455556666
Q ss_pred CCCCHHHHHHHHHHHhccCCHHH-HHHHHHHhHHh--------cC-CCCChHHH--HHHHHHHHHcCCHHHHHHHHHhC-
Q 004487 473 YQPDSVSLLSVLSACSHCGLIEE-GLQYFNSMTQK--------YK-LRPKKEHY--ASMVDILCRSGCFDEAEKLMAQM- 539 (749)
Q Consensus 473 ~~p~~~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~--------~~-~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~- 539 (749)
+++-...+.++..-=-+..-+++ +..+...+... .. -+|+...| -.++..+-+.|+++.|..+++..
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 55433333332221000000111 11111111100 00 13444333 35667778888888888888777
Q ss_pred CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 004487 540 PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 540 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
...|+ +..|..-...+...|++++|-..++++.+++. +|...-.--++-..++.+.++|.++.......|.
T Consensus 399 dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 399 DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 55565 33444444567777888888888888888887 6666655666666778888888888877766654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-07 Score=88.14 Aligned_cols=230 Identities=12% Similarity=0.099 Sum_probs=138.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 004487 345 TAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKS 424 (749)
Q Consensus 345 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 424 (749)
+.|-.+|.+.|.+.+|.+.|+.-.+. .|-..||..+-++|.+..+...|..++..-.+. ++.++....-+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777666554 344445555555555555555555554443332 122333333334444444
Q ss_pred CCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 004487 425 GSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFN 501 (749)
Q Consensus 425 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 501 (749)
++.++|.++++...+ .++.+.-++..+|.-.++++-|+..|+++.+.|+. +...|..+.-+|...+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555554442 23333344444555555566666666666555543 33344444445555555555554444
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 502 SMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 502 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
+.... .-+.++ -..+|-.|.......||+..|.+.|+-++..++ .+..
T Consensus 383 RAlst-------------------at~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~e 430 (478)
T KOG1129|consen 383 RALST-------------------ATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGE 430 (478)
T ss_pred HHHhh-------------------ccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHH
Confidence 33321 111111 245666666666778999999999999999999 9999
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
+++.|+-+-.+.|+.++|..+++..++..
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999887653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00023 Score=73.39 Aligned_cols=118 Identities=16% Similarity=0.231 Sum_probs=69.3
Q ss_pred HHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHhH--
Q 004487 44 IGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNS--LVDSYC-- 119 (749)
Q Consensus 44 i~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~-- 119 (749)
+.-+..+|++++|.....++... .+-|...+..-+-++...+.+++|..+. .+.+. ..+.+. +=.+||
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~i---kk~~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLI---KKNGA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHH---Hhcch---hhhcchhhHHHHHHHH
Confidence 45556777788888888877753 3445555666666667777777666332 22221 011111 234443
Q ss_pred cCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 004487 120 KIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLG 169 (749)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 169 (749)
+.+..++|...++...+.|..+...=.+.+.+.|++++|+++|+.+.+.+
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45677777777775444444455555566667777777777777776654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-06 Score=85.67 Aligned_cols=196 Identities=10% Similarity=-0.067 Sum_probs=130.5
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHhc
Q 004487 379 FASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE--R-NIVSWNALISACAQN 455 (749)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 455 (749)
|...-..+...|+.+.|...+...++.. +.+...++.+...|...|++++|.+.|+...+ | +...|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3344444555566666666665555543 23567788888889999999999999988763 3 456788888888899
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH--H
Q 004487 456 GDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEA--E 533 (749)
Q Consensus 456 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~ 533 (749)
|++++|++.|++..+ ..|+..........+...++.++|...|...... ..|+... ..++. ...|++.++ .
T Consensus 146 g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~-~~~~~--~~lg~~~~~~~~ 218 (296)
T PRK11189 146 GRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWG-WNIVE--FYLGKISEETLM 218 (296)
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccH-HHHHH--HHccCCCHHHHH
Confidence 999999999999988 5566543222233345677899999999765532 2333222 22333 335555443 3
Q ss_pred HHHHhC-CC----CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhH
Q 004487 534 KLMAQM-PF----EP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPY 583 (749)
Q Consensus 534 ~~~~~~-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 583 (749)
+.+.+. .. .| ....|..+...+...|+.++|+..|+++++.+| ++..-+
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~ 273 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEH 273 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHH
Confidence 333221 11 12 245788999999999999999999999999998 554443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00013 Score=71.62 Aligned_cols=384 Identities=8% Similarity=0.026 Sum_probs=192.3
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHccCCCCC-cchHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 004487 208 NVFVANALLDLYSKHDCVVEARKLFGEMPEVD-GVSYNVMITCYAWNEQ-YKESLKLFRELQFTRFDRSQFPFSTLLSVV 285 (749)
Q Consensus 208 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 285 (749)
+...-.-.+..|-..++-++|.....+.+..- ..--|.|+.-+-+.|- -.++.--+.+....-+ ..+ ..|.+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp----~aL-~~i~~l 170 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP----MAL-QVIEAL 170 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc----hHH-HHHHHH
Confidence 44455667888888899999999888887643 3334444444433332 2222222222221110 000 000000
Q ss_pred HccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc--CCHHHHHHHHHhcC-----CCCcccHHHHHHHHHhCCChh
Q 004487 286 ANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKC--GRFEEAKEIFANLS-----HISTVPWTAMISAYVQKGNLE 358 (749)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~ 358 (749)
...+ +..+..--..+-+....+.......-+.+|+.+ ++...|...+-.+. ..|+.....+...+...|+..
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 0000 000000000111112223233333334444443 33333333332222 233444666677777777777
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHH-HHHhcccCcHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 004487 359 EALNLFIEMCRANISADQATFASI-LRASAELASLSLGKQLHSFVIRSG-FMSNVFSGSALLDMYAKSGSLKDAIQTFKE 436 (749)
Q Consensus 359 ~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 436 (749)
+|...|++.+. +.|+..+-.-+ .-.+.+.|+++....+...+.... ......+ . -........+++.|..+-++
T Consensus 250 ~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf-V-~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 250 QAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF-V-HAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred HHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh-h-hhhhhhhhhhHHHHHHHHHH
Confidence 77777777654 33433321111 112245566666666555554432 1111111 1 11122234556666666665
Q ss_pred CCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 004487 437 MPERN---IVSWNALISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK 512 (749)
Q Consensus 437 ~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 512 (749)
..+.| +..+-.-...+.+.|+.++|.-.|+..+. +.| +-..|..|+..|...|...+|.-.-+...+. +..+
T Consensus 326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~s 401 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNS 401 (564)
T ss_pred HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcc
Confidence 55333 33333223456667777777777777766 444 3457777777777777777776655544432 1222
Q ss_pred hHHHHHH---HHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 004487 513 KEHYASM---VDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMS 587 (749)
Q Consensus 513 ~~~~~~l---i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 587 (749)
..+...+ |...-- .--++|.+++++. ..+|+ ...-+.+...|...|..+.++.++++.+...| |....+.|+
T Consensus 402 A~~LtL~g~~V~~~dp-~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D~~LH~~Lg 478 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDP-RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--DVNLHNHLG 478 (564)
T ss_pred hhhhhhhcceeeccCc-hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--ccHHHHHHH
Confidence 2222222 111111 1225677777766 56666 33445555667777777777777777777766 677777777
Q ss_pred HHHHHcCCchhHHHHHHHHHh
Q 004487 588 NIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 588 ~~~~~~g~~~~a~~~~~~m~~ 608 (749)
+++...+.+.+|...+.....
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 777777777777777766543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.8e-05 Score=83.41 Aligned_cols=277 Identities=12% Similarity=0.080 Sum_probs=157.3
Q ss_pred HHHHHHHHhcC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHH
Q 004487 327 EEAKEIFANLS---HISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVI 403 (749)
Q Consensus 327 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 403 (749)
..|...+.... ..+...||.|--. ...|++.-|..-|-+-... -+-+..+|..+--.|....+.+.|.+.+....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35556665543 3455667776544 5556666666666544432 12355677777777778888888888887776
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC-----C---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-----
Q 004487 404 RSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEM-----P---ERNIVSWNALISACAQNGDAQATLKSFEDMVQ----- 470 (749)
Q Consensus 404 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 470 (749)
.... .+...+--....-...|+.-++..+|..- . -++..-|-.-..-..++|+.++-+...+.+-.
T Consensus 878 SLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 5432 22222222222233556677777777652 1 14444555544555667766554444333222
Q ss_pred ----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH----HHHHHHHcCCHHHHHHHHHhCCCC
Q 004487 471 ----SGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYAS----MVDILCRSGCFDEAEKLMAQMPFE 542 (749)
Q Consensus 471 ----~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~ 542 (749)
.|.+-+...|........+.+....+.+...+...-...+-+...|+. ....+...|.++.|..-+...+.+
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 123344567777777777777777777666554321112234444442 344566678888777777666555
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchh---HHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 543 PDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAP---YVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 543 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
.|..+-.+-+..+ -.++++++...|++++.+.. .+... ...++.....++.-+.|...+-+...
T Consensus 1037 vdEdi~gt~l~lF-fkndf~~sl~~fe~aLsis~-se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTLF-FKNDFFSSLEFFEQALSISN-SESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHHhhhhHHHH-HHhHHHHHHHHHHHHhhhcc-cccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 5555555555543 34788899999999888765 33332 22333344455666666665554443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00061 Score=72.72 Aligned_cols=116 Identities=12% Similarity=0.048 Sum_probs=60.5
Q ss_pred cchhHHHHHHHHcCCChHHHHHHHhcCCC-C----------CcchHHHHHH-HHHcCCChhHHHHHHHHhHhcCCCCCCc
Q 004487 6 TVSTNMLISGYVKSGNLATARELFNSMVD-R----------TAVSWTILIG-GYSQKNQFREAFKLFVDMRTDGGSDPDY 73 (749)
Q Consensus 6 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-~----------~~~~~~~li~-~~~~~g~~~~a~~l~~~m~~~~g~~p~~ 73 (749)
-.+|..+-+++.+..+++=|.-.+-.|.. + |..--.+-.. .-.+-|-.++|..+|++-++.
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------- 829 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------- 829 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH-------
Confidence 35677777788887777777666666632 0 1100011111 123456677777777766542
Q ss_pred chHHHHHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccC
Q 004487 74 VTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEM 134 (749)
Q Consensus 74 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 134 (749)
..+=+.|-..|.|++|.++-+.--+-.+. .||-....-+-..++.+.|++.|++-
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 22223344566777777665543322222 23333333334456666666666654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.7e-07 Score=84.43 Aligned_cols=226 Identities=15% Similarity=0.124 Sum_probs=180.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHH-HHHHHhcccC
Q 004487 314 NSLVDMYAKCGRFEEAKEIFANLSH--ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFA-SILRASAELA 390 (749)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~~ 390 (749)
+-+..+|.+.|.+.+|.+.|+...+ +-+.+|-.|-..|.+..+++.|+.+|.+-.+. .|-.+||. ...+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5678889999999999999987653 56677888889999999999999999988764 67777765 4556667788
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 004487 391 SLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFED 467 (749)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 467 (749)
..+.+.++++.+.+.. +.++....++...|.-.++.+-|...++++. -.+...|+.+.-+|.-.++++-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 8999999999888764 3355555667777888899999999999876 46777888888888889999999999999
Q ss_pred HHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 004487 468 MVQSGYQPDSV--SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD 544 (749)
Q Consensus 468 m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 544 (749)
.+..--.|+.. .|..+.......|++..|.+.|+-.... -....+.++.|.-+-.|.|++++|..+++.. ...|+
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 88865556654 5666777778899999999999876632 2334677888888888999999999999887 44455
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-05 Score=83.73 Aligned_cols=282 Identities=16% Similarity=0.167 Sum_probs=152.9
Q ss_pred HHhcCCHHHHHHHHHhcCC--CCccc-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhc----c--cC
Q 004487 320 YAKCGRFEEAKEIFANLSH--ISTVP-WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASA----E--LA 390 (749)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~----~--~~ 390 (749)
+...|+.++|.+.++.-.. .|..+ .......+.+.|+.++|..+++.+.+. .|+...|-..+..|. . ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccccc
Confidence 4556666666666655432 23223 334445566666666666666666664 355555554444443 1 11
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH-HHHHHHhhCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHH
Q 004487 391 SLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLK-DAIQTFKEMPERNI-VSWNALISACAQNGDAQATLKSFEDM 468 (749)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 468 (749)
+.+...++++.+...-.. ......+.-.+.....+. .+...+..+..+.+ .+|+.+-..|.......-..+++...
T Consensus 92 ~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 344444555544333211 111111111111111111 12222233333332 34555555555444444444455444
Q ss_pred HHC----C----------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHH
Q 004487 469 VQS----G----------YQPDSV--SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDE 531 (749)
Q Consensus 469 ~~~----g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 531 (749)
... | -.|... ++..+...|.+.|++++|+++.+.... ..|+ ++.|..-...|-+.|++++
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHH
Confidence 332 1 123332 444455567788888888888887774 3565 6777778888888888888
Q ss_pred HHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCCc------hhHHHHHHHHHHcCCchhHHH
Q 004487 532 AEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK--LRDA------APYVAMSNIYAVAGQWESVSQ 601 (749)
Q Consensus 532 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~------~~~~~l~~~~~~~g~~~~a~~ 601 (749)
|.+.++.. ...+ |..+-+-....+.+.|++++|+.++......+. ..|. ....-.+.+|.+.|++..|.+
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88888877 3333 444444455566788888888888887766552 1111 112356778888888888888
Q ss_pred HHHHHHh
Q 004487 602 VKKAMRE 608 (749)
Q Consensus 602 ~~~~m~~ 608 (749)
.+....+
T Consensus 327 ~~~~v~k 333 (517)
T PF12569_consen 327 RFHAVLK 333 (517)
T ss_pred HHHHHHH
Confidence 7766543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00086 Score=79.78 Aligned_cols=195 Identities=11% Similarity=0.090 Sum_probs=99.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-------CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC--HHH
Q 004487 415 SALLDMYAKSGSLKDAIQTFKEMPE-------RN----IVSWNALISACAQNGDAQATLKSFEDMVQSG--YQPD--SVS 479 (749)
Q Consensus 415 ~~li~~y~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t 479 (749)
..+...+...|+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ..+
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 3344455555666666555544321 01 1122333344555577777776666654421 1121 123
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHHHcCCHHHHHHHHHhCCC-C-CCH----HhH
Q 004487 480 LLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHY-----ASMVDILCRSGCFDEAEKLMAQMPF-E-PDE----IMW 548 (749)
Q Consensus 480 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~ 548 (749)
+..+.......|+.++|.+.+.....-.........+ ......+...|+.++|.+.+..... . ... ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 3334445566777777777666654321111100001 0112334456777777777666521 1 111 113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCC-----CCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 549 SSVINSCRIHKNLEFAKKAADQLFKMEKL-----RDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 549 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
..+..++...|+.++|...++++.+.... ....++..++.+|...|+.++|...+.+..+.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555566777777777777777654210 12235667777777888888887777777654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-06 Score=75.56 Aligned_cols=192 Identities=13% Similarity=0.113 Sum_probs=151.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc
Q 004487 415 SALLDMYAKSGSLKDAIQTFKEMPER---NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHC 490 (749)
Q Consensus 415 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~ 490 (749)
..|.-.|...|+...|.+-+++..+. +..+|..+...|.+.|+.+.|.+.|++..+ +.|+.- ..|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhC
Confidence 45667788999999999999888743 345788888888999999999999999888 566543 566666667788
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHH
Q 004487 491 GLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAA 568 (749)
Q Consensus 491 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 568 (749)
|.+++|.+.|+.....-...-...+|..++-+-.+.|+.+.|.+.+++. ...|+ ..+.-.+.......|++-.|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 8999999999888765333334567888888888999999999999887 44453 556667777788889999999999
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 569 DQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
++.....+ .+.....+.+.+-.+.|+-+.+.+.-..+...
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99988888 88888888888888999988888877776543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.6e-07 Score=89.61 Aligned_cols=148 Identities=10% Similarity=0.087 Sum_probs=100.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH---HHHHHHHHHHcCC
Q 004487 452 CAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEH---YASMVDILCRSGC 528 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~ 528 (749)
+...|++++|++++++- .+.......+..|...++++.|.+.++.|.+ +..|... ..+++..+.-.+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchh
Confidence 34456777777666532 2444555566667777777777777777762 3344321 2233443333346
Q ss_pred HHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCc-hhHHHHHHH
Q 004487 529 FDEAEKLMAQM--PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQW-ESVSQVKKA 605 (749)
Q Consensus 529 ~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 605 (749)
+.+|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+| .++.+...++-+....|+. +.+.+++.+
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 88888888888 4456778888888888999999999999999999999 8888988999888899988 667788888
Q ss_pred HHhC
Q 004487 606 MRER 609 (749)
Q Consensus 606 m~~~ 609 (749)
+++.
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 7654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-06 Score=89.44 Aligned_cols=245 Identities=12% Similarity=0.104 Sum_probs=163.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004487 390 ASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFE 466 (749)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 466 (749)
|++.+|.-.++..++.. +.+...|--|...-+..++-..|+..+++..+ .|....-+|.-.|...|.-.+|+..++
T Consensus 299 G~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred CCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33444444444443332 22344444444445555555555555555543 334455555666777777778888777
Q ss_pred HHHHCCCC-----C---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 004487 467 DMVQSGYQ-----P---DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQ 538 (749)
Q Consensus 467 ~m~~~g~~-----p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 538 (749)
.-+....+ + +..+-.. ....+...+....++|-.+....+..+|++++.+|.-+|.-.|++++|.+-|+.
T Consensus 378 ~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 76553210 0 0000000 122233345566677777776667678899999999999999999999999999
Q ss_pred C-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCc
Q 004487 539 M-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTA 616 (749)
Q Consensus 539 ~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 616 (749)
+ .++| |...||-|...+......++|+.+|++++++.| .-......|+-.|...|.+++|.+.+-......-+.
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP-~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks--- 531 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP-GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS--- 531 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC-CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc---
Confidence 8 7788 588999999999999999999999999999999 888888899999999999999999887765432111
Q ss_pred eeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH
Q 004487 617 YSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMK 654 (749)
Q Consensus 617 ~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 654 (749)
....+..++ .+.|+..|...+..|.
T Consensus 532 ------------~~~~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 532 ------------RNHNKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred ------------cccccCCcc-hHHHHHHHHHHHHHcC
Confidence 001112233 5778888876666654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-05 Score=85.66 Aligned_cols=256 Identities=11% Similarity=0.069 Sum_probs=181.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCcCHHhH-HHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc---
Q 004487 349 SAYVQKGNLEEALNLFIEMCRANISADQATF-ASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKS--- 424 (749)
Q Consensus 349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~--- 424 (749)
..+...|++++|++.+..-.. ..+|..++ ......+.++|+.++|..++..+++.+. .+..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 456788999999999977543 35565544 4566778999999999999999999874 3555566666665322
Q ss_pred --CCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 004487 425 --GSLKDAIQTFKEMPE--RNIVSWNALISACAQNGDA-QATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQY 499 (749)
Q Consensus 425 --g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 499 (749)
...+...++++++.+ |.......+.-.+.....+ ..+...+..+...|+++ +|+.|-..|......+-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 256777788887753 2222222222222222223 24556677788888765 455555556555555555555
Q ss_pred HHHhHHhc-------------CCCCChHHH--HHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHH
Q 004487 500 FNSMTQKY-------------KLRPKKEHY--ASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLE 562 (749)
Q Consensus 500 ~~~m~~~~-------------~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 562 (749)
+....... .-.|+...| .-+...|.+.|++++|++++++. ...|+ +..|..-...+.+.|+++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 55544321 012333333 45678899999999999999987 66776 667777888899999999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 004487 563 FAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 563 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
+|...++.+.++++ .|.....-.+.-+.++|+.++|.++.......+.
T Consensus 246 ~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 246 EAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999 9999999999999999999999999998866654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.0002 Score=74.67 Aligned_cols=379 Identities=14% Similarity=0.130 Sum_probs=217.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHH
Q 004487 188 ADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFR 264 (749)
Q Consensus 188 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 264 (749)
+++..+.+..+.+++ +.+....+.....-.+...|+-++|......-.. ++.+.|..+.-.+-...++++|+..|+
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 344444444444444 2222222222222234456777777776665544 456778888777777788899999888
Q ss_pred HHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCc
Q 004487 265 ELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLS---HIST 341 (749)
Q Consensus 265 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~ 341 (749)
..... .||. ..++.-|.-.-++.++++.....-.... ....
T Consensus 100 nAl~~--~~dN----------------------------------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r 143 (700)
T KOG1156|consen 100 NALKI--EKDN----------------------------------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR 143 (700)
T ss_pred HHHhc--CCCc----------------------------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence 87654 2332 2223333333344444444444333332 2344
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCcCHHhHHHHHH------HhcccCcHHHHHHHHHHHHHhCCCCchhHH
Q 004487 342 VPWTAMISAYVQKGNLEEALNLFIEMCRAN-ISADQATFASILR------ASAELASLSLGKQLHSFVIRSGFMSNVFSG 414 (749)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (749)
..|..+..++.-.|++..|..+.++..+.. -.|+...+..... .....|.++.+.+.+...... +......-
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~ 222 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHh
Confidence 568888889999999999999998887754 2456555543322 234556666666554433221 11122223
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHHH-HHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHH-HHHHHHhc
Q 004487 415 SALLDMYAKSGSLKDAIQTFKEMPE--RNIVSWNALI-SACAQNGDAQATL-KSFEDMVQSGYQPDSVSLL-SVLSACSH 489 (749)
Q Consensus 415 ~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~-~ll~a~~~ 489 (749)
-.-.+.+.+.+++++|..++..+.. ||-.-|.-.. .++.+-.+.-+++ .+|....+. .|-...-. .=++....
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNG 300 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCc
Confidence 3456678889999999999998874 5545554443 3443333444444 666666552 22221111 11111222
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH----HHHHHHhC-C------------CCCCHHhHHHH-
Q 004487 490 CGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDE----AEKLMAQM-P------------FEPDEIMWSSV- 551 (749)
Q Consensus 490 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~-~------------~~p~~~~~~~l- 551 (749)
....+..-.++..+.++ |+++- +..+...|-.-...+- +.++...+ + -.|....|...
T Consensus 301 eel~~~vdkyL~~~l~K-g~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSK-GVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred chhHHHHHHHHHHHhhc-CCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 22233344445455443 66542 3333333332221111 22222222 1 25677778764
Q ss_pred -HHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 004487 552 -INSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 552 -l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
...+-..|+++.|+...+.+++--| .-...|..-+.++..+|..++|..+++..++...
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdHTP-TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDHTP-TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 4457788999999999999999888 7778888888999999999999999999877543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.60 E-value=9e-05 Score=77.44 Aligned_cols=295 Identities=11% Similarity=-0.019 Sum_probs=177.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCCccc---HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCH-HhHHH---H
Q 004487 313 ANSLVDMYAKCGRFEEAKEIFANLS---HISTVP---WTAMISAYVQKGNLEEALNLFIEMCRANISADQ-ATFAS---I 382 (749)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~---l 382 (749)
+..+...+...|+.+.+.+.+.... ..+... .......+...|++++|.+.+++..+. .|+. ..+.. .
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~ 86 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHH
Confidence 3444455555666666555544432 122222 222234566788999999999888775 3433 33331 1
Q ss_pred HHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHH
Q 004487 383 LRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQ 459 (749)
Q Consensus 383 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 459 (749)
.......+....+.+.... .....+........+...+...|++++|.+.+++..+ .+...+..+...+...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 1112223444555554443 1112222334445566788899999999999998763 44567788888899999999
Q ss_pred HHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHHHcCCHHHHH
Q 004487 460 ATLKSFEDMVQSGY-QPDS--VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHY-A--SMVDILCRSGCFDEAE 533 (749)
Q Consensus 460 ~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~ 533 (749)
+|...+++...... .|+. ..+..+...+...|++++|..+++.........+..... + .+...+...|....+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999998887422 2332 234567778889999999999999875321111111111 1 3334444555433333
Q ss_pred HH---HHhC-CCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--------CCchhHHHHHHHHHHcCCchh
Q 004487 534 KL---MAQM-PFEPD---EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKL--------RDAAPYVAMSNIYAVAGQWES 598 (749)
Q Consensus 534 ~~---~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~ 598 (749)
+. .... +..|. .........++...|+.+.|...++.+...... .........+.++...|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 32 2211 11111 222234566678889999999999888664321 134556678888999999999
Q ss_pred HHHHHHHHHhCC
Q 004487 599 VSQVKKAMRERG 610 (749)
Q Consensus 599 a~~~~~~m~~~g 610 (749)
|.+.+......+
T Consensus 326 A~~~L~~al~~a 337 (355)
T cd05804 326 ALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00039 Score=66.76 Aligned_cols=290 Identities=13% Similarity=0.139 Sum_probs=200.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHH-HHHHhcc
Q 004487 313 ANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMI---SAYVQKGNLEEALNLFIEMCRANISADQATFAS-ILRASAE 388 (749)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~ 388 (749)
.-.|...+.-.|++.+|..-|....+.|+..|-++. ..|...|+..-|+.-|....+ ++||-..-.. --..+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 334555666778888888888888887777776654 467788888888887877766 4676433221 1223567
Q ss_pred cCcHHHHHHHHHHHHHhCCCCc----h----------hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHH
Q 004487 389 LASLSLGKQLHSFVIRSGFMSN----V----------FSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISA 451 (749)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~----~----------~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 451 (749)
.|.++.|..=|..+++...... . ......+..+...|+...|+.....+.+ .|...|..-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 7888888888887777543211 1 1112233445667888888888877663 566777777888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH----HHHH---H----
Q 004487 452 CAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEH----YASM---V---- 520 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----~~~l---i---- 520 (749)
|...|++..|+.=++...+.. .-|..++--+-..+...|+.+.++....+.. .+.|+... |-.| +
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHH
Confidence 999999999988777665531 2334466666667788899988888887776 46676432 2211 1
Q ss_pred --HHHHHcCCHHHHHHHHHhC-CCCCC--HH---hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 004487 521 --DILCRSGCFDEAEKLMAQM-PFEPD--EI---MWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAV 592 (749)
Q Consensus 521 --~~~~~~g~~~~A~~~~~~~-~~~p~--~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 592 (749)
....+.+++.++.+-.+.. ...|. .+ .+..+-..++..+++.+|++...++++.+| +|..++.--+.+|..
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhh
Confidence 2244566777766666554 44454 22 333344455788899999999999999999 999999999999999
Q ss_pred cCCchhHHHHHHHHHhC
Q 004487 593 AGQWESVSQVKKAMRER 609 (749)
Q Consensus 593 ~g~~~~a~~~~~~m~~~ 609 (749)
...+++|..-++...+.
T Consensus 354 dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALEL 370 (504)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 99999999999888664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0027 Score=68.05 Aligned_cols=50 Identities=4% Similarity=0.084 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHhcCC----CCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 560 NLEFAKKAADQLFKME----KLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 560 ~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
|..+++.-.+.+++.. |.+-...|..|+..|....+|..|-+.++.|..+
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 4455555555555432 2233567889999999999999999999999765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.7e-06 Score=81.90 Aligned_cols=222 Identities=14% Similarity=0.135 Sum_probs=141.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHH
Q 004487 344 WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFM-SNVFSGSALLDMYA 422 (749)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~ 422 (749)
..-+.++|...|+++.++. +.... -.|....+..+...+....+-+.+..-+......... .+..+......+|.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 3445567777777665443 22222 2555555544444444433333333322222222222 23344444456677
Q ss_pred hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHH
Q 004487 423 KSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSH----CGLIEEGLQ 498 (749)
Q Consensus 423 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~ 498 (749)
..|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. ...+.+|..
T Consensus 114 ~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A~y 188 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDAFY 188 (290)
T ss_dssp CCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred HcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHHHH
Confidence 889999999888876 4556666678889999999999999999987 44454 34444444332 346899999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCH-HHHHHHHHHHhcCC
Q 004487 499 YFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNL-EFAKKAADQLFKME 575 (749)
Q Consensus 499 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~ 575 (749)
+|+++..+ ..+++.+.+.+.-+....|++++|.+++++. ...| |+.++..++..+...|+. +.+.+.++++....
T Consensus 189 ~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 189 IFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 99998764 4578888888999999999999999998886 4445 466777777777777876 67788888888888
Q ss_pred C
Q 004487 576 K 576 (749)
Q Consensus 576 ~ 576 (749)
|
T Consensus 267 p 267 (290)
T PF04733_consen 267 P 267 (290)
T ss_dssp T
T ss_pred C
Confidence 7
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.7e-05 Score=69.32 Aligned_cols=388 Identities=12% Similarity=0.059 Sum_probs=193.7
Q ss_pred hhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC--CCcchHHHH-HHHHH
Q 004487 175 FTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE--VDGVSYNVM-ITCYA 251 (749)
Q Consensus 175 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~l-i~~~~ 251 (749)
--+.+++..+.+..++..+.+++....+.. +.+....+.|...|-...++..|-..++.+.. |...-|... ...+.
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 334555555555555555555555444332 11333444555555555556655555555433 222222211 23444
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHH
Q 004487 252 WNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKE 331 (749)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 331 (749)
+.+.+.+|+++...|... |+...-..-+.+. ..-..+++..++.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaA---------------------------------IkYse~Dl~g~rs 133 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAA---------------------------------IKYSEGDLPGSRS 133 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHH---------------------------------HhcccccCcchHH
Confidence 555555666655555321 1111000001100 1123455555555
Q ss_pred HHHhcCC-CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCc
Q 004487 332 IFANLSH-ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSN 410 (749)
Q Consensus 332 ~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (749)
+.++.+. .+..+.+.......+.|++++|++-|+...+-+---....|+..+.- .+.++.+.|....+.++++|+...
T Consensus 134 LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~H 212 (459)
T KOG4340|consen 134 LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQH 212 (459)
T ss_pred HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcC
Confidence 5555552 33333333333344566666666666655543222223444443332 334555666666555555543311
Q ss_pred ----------------------------hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCcchHHHHHHHHHhcCC
Q 004487 411 ----------------------------VFSGSALLDMYAKSGSLKDAIQTFKEMPE-----RNIVSWNALISACAQNGD 457 (749)
Q Consensus 411 ----------------------------~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~ 457 (749)
+..+|.-...+.+.|+.+.|.+.+..|+. .|++|...+.-. -..++
T Consensus 213 PElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~ 291 (459)
T KOG4340|consen 213 PELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDAR 291 (459)
T ss_pred CccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCC
Confidence 12233333456788999999999999983 467776655322 22345
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHHc-CCHHHHHHH
Q 004487 458 AQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKL-RPKKEHYASMVDILCRS-GCFDEAEKL 535 (749)
Q Consensus 458 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~-g~~~~A~~~ 535 (749)
+.+..+-+.-+.... +-...||..++-.|++..-++-|-.++.+=... .. -.+...|+ |++++..+ -..++|++-
T Consensus 292 p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KK 368 (459)
T KOG4340|consen 292 PTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKK 368 (459)
T ss_pred ccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHH
Confidence 555555555555532 234569999999999999999888877431100 00 01222333 34444433 356666666
Q ss_pred HHhCCCCCCHHhHHHHHHH--HHhcCC---HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 536 MAQMPFEPDEIMWSSVINS--CRIHKN---LEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 536 ~~~~~~~p~~~~~~~ll~~--~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
++.....-....-...+.. -+..++ +..+++-+++.+++.. .....-+++|++..++..+.+.+..-.+
T Consensus 369 L~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL----PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 369 LDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL----PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 5554100000001111111 111221 2334444555555432 2455677889999999999999887654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-07 Score=58.83 Aligned_cols=33 Identities=36% Similarity=0.640 Sum_probs=25.4
Q ss_pred CCCCchhHHHHHHHHhHcCCChhHHHHHHccCC
Q 004487 103 GYNSILIICNSLVDSYCKIRCLDLARRVFKEMP 135 (749)
Q Consensus 103 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 135 (749)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777774
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-05 Score=89.49 Aligned_cols=201 Identities=12% Similarity=0.103 Sum_probs=168.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004487 408 MSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE--------RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVS 479 (749)
Q Consensus 408 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 479 (749)
+.+...|-..+......+++++|++++++... .-...|.++++.-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 33455666777778889999999999998763 23458999999988999889999999999883 333457
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHhHHHHHHHH
Q 004487 480 LLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD---EIMWSSVINSC 555 (749)
Q Consensus 480 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~ 555 (749)
|..|+..|...+..++|-++++.|.++++ .....|..+++.+.+..+-++|..++.++ ..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999876 66778999999999999999999999887 33343 44444455556
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCcc
Q 004487 556 RIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRK 613 (749)
Q Consensus 556 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 613 (749)
.++||.+.|..+|+.++.-.| .....|..+++.-.+.|..+.+..++++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 789999999999999999999 889999999999999999999999999998887643
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-05 Score=76.93 Aligned_cols=180 Identities=10% Similarity=0.031 Sum_probs=112.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-c---chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----H
Q 004487 410 NVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RN-I---VSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV----S 479 (749)
Q Consensus 410 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 479 (749)
....+..+...|.+.|++++|...|+++.+ |+ . ..|..+..++.+.|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555666677777777777777776652 22 1 34556667777777777777777777763 33322 3
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHH
Q 004487 480 LLSVLSACSHC--------GLIEEGLQYFNSMTQKYKLRPKKE-HYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSS 550 (749)
Q Consensus 480 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 550 (749)
+..+..++... |+.++|.+.|+.+... .|+.. .+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 44444444443 5677777777776643 34322 11111111 0000000 001123
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCC--CCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKL--RDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
+...+...|+.++|...++++++..|. .....+..++.+|...|++++|...++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455678889999999999999998761 23478899999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0038 Score=64.01 Aligned_cols=173 Identities=12% Similarity=0.091 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHh
Q 004487 357 LEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMS-NVFSGSALLDMYAKSGSLKDAIQTFK 435 (749)
Q Consensus 357 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~ 435 (749)
.+.....+.+....-..--..+|...++...+..-++.|+.+|..+.+.+..+ ++.++++++..|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 34444455554443222223456666666677777777777777777766655 7777777777666 366677777777
Q ss_pred hCCC--CCc-chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--
Q 004487 436 EMPE--RNI-VSWNALISACAQNGDAQATLKSFEDMVQSGYQPDS--VSLLSVLSACSHCGLIEEGLQYFNSMTQKYK-- 508 (749)
Q Consensus 436 ~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 508 (749)
--.+ +|. .--+..+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+..|++..+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 4432 333 33344555566667777777777777777666665 3677777777777777777777766665443
Q ss_pred CCCChHHHHHHHHHHHHcCCHH
Q 004487 509 LRPKKEHYASMVDILCRSGCFD 530 (749)
Q Consensus 509 ~~p~~~~~~~li~~~~~~g~~~ 530 (749)
..|...+-..+++.|.-.+...
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hcCCCChHHHHHHHHhhccccc
Confidence 3433344445566665555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.9e-07 Score=56.48 Aligned_cols=33 Identities=33% Similarity=0.601 Sum_probs=25.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 004487 406 GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP 438 (749)
Q Consensus 406 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 438 (749)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777774
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00038 Score=75.98 Aligned_cols=378 Identities=12% Similarity=0.080 Sum_probs=208.4
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCcchHHHHHHH
Q 004487 209 VFVANALLDLYSKHDCVVEARKLFGEMPE---VDGVSYNVMITCYAWNEQYKESLKLFRELQFTR-FDRSQFPFSTLLSV 284 (749)
Q Consensus 209 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~ 284 (749)
...|..|...|....++..|.+.|+..-+ .|..+|......|+....+++|..+.-.--+.. ...-...|...--.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 34678888888887788899999988765 456688889999999999999998832221110 00001112222223
Q ss_pred HHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHH-H--HHHHHhCCChhHHH
Q 004487 285 VANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTA-M--ISAYVQKGNLEEAL 361 (749)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l--i~~~~~~g~~~~A~ 361 (749)
+...++...+..-++...+.. +-|...|..|..+|..+|+...|.++|.+....++.+|-. . ...-+.+|.+.+|+
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 345566666666666555443 4477888999999999999999999998887666655322 1 22345688899998
Q ss_pred HHHHHHHHC------CCCcCHHhHHHHHHHhcccCcH-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 004487 362 NLFIEMCRA------NISADQATFASILRASAELASL-------SLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLK 428 (749)
Q Consensus 362 ~l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 428 (749)
..+...... +..--..++......+...|-. +...+.+..........+...+-.+ .
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------s 720 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------S 720 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------h
Confidence 888776542 1111112222222222222222 2222222222222212222222211 1
Q ss_pred HHHHHHhhCCCCCcc--hHHHHHHH-HHhcCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c---C-
Q 004487 429 DAIQTFKEMPERNIV--SWNALISA-CAQNGDA---Q---ATLKSFEDMVQSGYQPDSVSLLSVLSACSH----C---G- 491 (749)
Q Consensus 429 ~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~---g- 491 (749)
+|..+|-... |+.+ .+..++.. .-..+.. + -+.+.+-.-+. ...+..+|..+...|.+ . +
T Consensus 721 dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~ 797 (1238)
T KOG1127|consen 721 DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMK 797 (1238)
T ss_pred HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcch
Confidence 2333333332 3311 11111111 1111111 1 11111111111 11223334333333222 1 1
Q ss_pred CHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHH
Q 004487 492 LIEEGLQYFNSMTQKYKLRPKK-EHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAA 568 (749)
Q Consensus 492 ~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 568 (749)
+...|+..+....+ +..+. ..|+.| ..+.-.|.+.-|.--|-+. -..| ...+|..+...|....|++.|..+|
T Consensus 798 ~~~~Ai~c~KkaV~---L~ann~~~WnaL-GVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 798 DACTAIRCCKKAVS---LCANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred hHHHHHHHHHHHHH---HhhccHHHHHHH-HHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHH
Confidence 22355666655543 23333 344444 3445556777666655443 3334 5788888888888999999999999
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHH
Q 004487 569 DQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKA 605 (749)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 605 (749)
.+...++| .|...+.-.+-+-...|+.-++..++..
T Consensus 874 ~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 874 SSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999 8888888888888888887777777665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-05 Score=70.93 Aligned_cols=121 Identities=11% Similarity=0.056 Sum_probs=89.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 004487 463 KSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-P 540 (749)
Q Consensus 463 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 540 (749)
.+|++..+ +.|+. +..+..++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 45554 44456677788888888888887763 344 5667777888888888888888888887 4
Q ss_pred CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 004487 541 FEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYA 591 (749)
Q Consensus 541 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (749)
..| +...|..+..++...|+.++|+..++++++..| .++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p-~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY-ADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 445 567777888888888888888888888888888 88888877766553
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.8e-05 Score=72.57 Aligned_cols=118 Identities=8% Similarity=0.098 Sum_probs=87.7
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHH-HHhcCC--HHHH
Q 004487 490 CGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINS-CRIHKN--LEFA 564 (749)
Q Consensus 490 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 564 (749)
.++.+++...++...+. -+.+...|..+...|...|++++|...+++. ...| +..++..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55566666666665542 2345677777788888888888888888777 5555 46667666665 356666 4888
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 565 KKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
..+++++++.+| .+..++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888 888888888888888888888888888887653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00055 Score=70.04 Aligned_cols=213 Identities=14% Similarity=0.155 Sum_probs=128.9
Q ss_pred HHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc---hHHH-------HHHH
Q 004487 382 ILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIV---SWNA-------LISA 451 (749)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~-------li~~ 451 (749)
+.++..+..+++.+.+-+....... .++.-++....+|...|.+......-+...+..-. -|+. +..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 4444444555556666555555544 45555566666676666666555544443321111 1121 2334
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH-HHHHHHHHHHcCCHH
Q 004487 452 CAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEH-YASMVDILCRSGCFD 530 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~g~~~ 530 (749)
|.+.++++.|+..|.+.......||..+ +....+++....+... -+.|.... ...=...+.+.|++.
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHH
Confidence 5556677777777777665444443221 1222333333332221 23343211 111145566788888
Q ss_pred HHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 531 EAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 531 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
+|.+.+.++ ...| |...|.....+|.+.|++..|+.-.+..++++| +....|..=+.++....+|++|.+.+.+..+
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888887 4445 577888888888888888888888888888888 8888888888888888888888888887655
Q ss_pred C
Q 004487 609 R 609 (749)
Q Consensus 609 ~ 609 (749)
.
T Consensus 455 ~ 455 (539)
T KOG0548|consen 455 L 455 (539)
T ss_pred c
Confidence 4
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0014 Score=68.53 Aligned_cols=54 Identities=7% Similarity=-0.024 Sum_probs=26.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCcC-HHhHHHHHHHhcccCcHHHHHHHHHHHH
Q 004487 348 ISAYVQKGNLEEALNLFIEMCRANISAD-QATFASILRASAELASLSLGKQLHSFVI 403 (749)
Q Consensus 348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 403 (749)
...+...|++++|...+++..+. .|+ ...+..+-..+...|+++++...+....
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 34556666666666666666553 232 2233333334444444444444444333
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00015 Score=68.03 Aligned_cols=83 Identities=11% Similarity=0.139 Sum_probs=65.0
Q ss_pred HHHHHcCCHHHHHHHHHhCC----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCc
Q 004487 521 DILCRSGCFDEAEKLMAQMP----FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQW 596 (749)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 596 (749)
..+.+.|+++.|.+.+..|| .+.|++|...+.-. -..++...+.+-++-++++.| -...++..+.-+|++..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 34668899999999999994 23467777654322 345667777888888999999 8889999999999999999
Q ss_pred hhHHHHHHH
Q 004487 597 ESVSQVKKA 605 (749)
Q Consensus 597 ~~a~~~~~~ 605 (749)
+-|..++-+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 999888754
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0025 Score=65.44 Aligned_cols=429 Identities=13% Similarity=0.053 Sum_probs=234.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHcCCCh
Q 004487 147 TGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVEN-VFVANALLDLYSKHDCV 225 (749)
Q Consensus 147 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~ 225 (749)
.+....|+++.|+.+|.+..... ++|...|+.=..+++..++++.|.+=-...++. .|+ .--|+.+..+..-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34567899999999998877653 347777888888888888888776555554443 333 23466667777777888
Q ss_pred HHHHHHHccCCCC---CcchHHHHHHHHHhcCChhHH-HHHHHHH-HHCCCCCCcchHHHHHHHHHccCChHHHHHHHHH
Q 004487 226 VEARKLFGEMPEV---DGVSYNVMITCYAWNEQYKES-LKLFREL-QFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQ 300 (749)
Q Consensus 226 ~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A-~~~~~~m-~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 300 (749)
++|...|.+-.+. |...++-+..++ ..+.+ .+.|..- .-.++.-++.|-..+-+. .+ ..+...
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~-----~~---~~~l~~ 154 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYSLSDP-----AY---VKILEI 154 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhhhccH-----HH---HHHHHH
Confidence 8888888776653 333455555544 11111 1111100 000111111111111110 00 011111
Q ss_pred HHHh------cCCcchhHHHHHHHHHHhcCCHHHHHHHH--HhcCCC-----Cc-----------------ccHHHHHHH
Q 004487 301 TIVT------TAISEVKVANSLVDMYAKCGRFEEAKEIF--ANLSHI-----ST-----------------VPWTAMISA 350 (749)
Q Consensus 301 ~~~~------g~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~~~~~-----~~-----------------~~~~~li~~ 350 (749)
+.+. -+. |..+-.++.......-....+.... ..+..| +. ...-.+..+
T Consensus 155 ~~~~p~~l~~~l~-d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna 233 (539)
T KOG0548|consen 155 IQKNPTSLKLYLN-DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA 233 (539)
T ss_pred hhcCcHhhhcccc-cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence 1110 000 1111111111000000000000000 000000 00 003445566
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhc
Q 004487 351 YVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSN------VFSGSALLDMYAKS 424 (749)
Q Consensus 351 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~y~~~ 424 (749)
..+..+++.|++-+....... -+..-++..-.++...|........-...++.|...- ......+..+|.+.
T Consensus 234 aykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 666777888888887776643 2333334444556667766666555544444442210 11112244578888
Q ss_pred CCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHh
Q 004487 425 GSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSM 503 (749)
Q Consensus 425 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m 503 (749)
++++.|...|++...+... -....+....++++...+...- +.|+.. -...-.+.+.+.|++..|...+.++
T Consensus 312 ~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999885521111 1112333445666666655554 445542 2223356788999999999999998
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 504 TQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 504 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
+.. -+-|...|+...-+|.+.|.+.+|++-.+.. ...|+ ...|.-=..++....+++.|...|++.++.+| .+..
T Consensus 385 Ikr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp-~~~e 461 (539)
T KOG0548|consen 385 IKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP-SNAE 461 (539)
T ss_pred Hhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-hhHH
Confidence 864 2446778999999999999999998877666 44554 33444444455666789999999999999999 7777
Q ss_pred hHHHHHHHHHHcCCchhHHHHH
Q 004487 582 PYVAMSNIYAVAGQWESVSQVK 603 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~ 603 (749)
.-..+..++......+...++.
T Consensus 462 ~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 462 AIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHHHHHHHHHHhhcCCCHHHHH
Confidence 7777776665543333333333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.002 Score=76.62 Aligned_cols=321 Identities=11% Similarity=-0.009 Sum_probs=167.9
Q ss_pred hCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCC----CC---c---c--hHHHHHHHHHh
Q 004487 185 VGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE----VD---G---V--SYNVMITCYAW 252 (749)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~---~---~--~~~~li~~~~~ 252 (749)
...|+.+.....+..+.......+..........+...|++++|...++.... .+ . . ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34455555555554432111111222223344445566777777666654321 11 1 1 11112234556
Q ss_pred cCChhHHHHHHHHHHHCCCCCCc----chHHHHHHHHHccCChHHHHHHHHHHHHhcCC-----cchhHHHHHHHHHHhc
Q 004487 253 NEQYKESLKLFRELQFTRFDRSQ----FPFSTLLSVVANKLDLQIGRQIHTQTIVTTAI-----SEVKVANSLVDMYAKC 323 (749)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~~~~~ 323 (749)
.|++++|...+++....-...+. .....+-..+...|+++.+...+.......-. ........+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 78888888888776553111111 12233334455678888888777776643211 1123445566677788
Q ss_pred CCHHHHHHHHHhcCC----C---Cc----ccHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCcC--HHhHHHHHHHhcc
Q 004487 324 GRFEEAKEIFANLSH----I---ST----VPWTAMISAYVQKGNLEEALNLFIEMCRAN--ISAD--QATFASILRASAE 388 (749)
Q Consensus 324 g~~~~A~~~~~~~~~----~---~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t~~~ll~~~~~ 388 (749)
|+++.|...+++... . +. ..+..+...+...|++++|...+.+..... ..+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 888888887766432 1 11 113334455666788888888887765421 1121 2233334445566
Q ss_pred cCcHHHHHHHHHHHHHhCCC--Cch---h-HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-------hHHHHHHHHHhc
Q 004487 389 LASLSLGKQLHSFVIRSGFM--SNV---F-SGSALLDMYAKSGSLKDAIQTFKEMPERNIV-------SWNALISACAQN 455 (749)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~--~~~---~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~ 455 (749)
.|+.+.|...+.......-. ... . .....+..+...|+.+.|.+.+.....+... .+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 77777777776665442110 000 0 0011223445567777777777665532211 123445556677
Q ss_pred CCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 004487 456 GDAQATLKSFEDMVQS----GYQPDS-VSLLSVLSACSHCGLIEEGLQYFNSMTQ 505 (749)
Q Consensus 456 g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 505 (749)
|++++|...+++.... |..++. .+...+..++...|+.++|...+.+..+
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777766542 222222 2444555566677777777777766654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-05 Score=68.51 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 004487 513 KEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIY 590 (749)
Q Consensus 513 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 590 (749)
.+..-.+...+...|++++|.++|+-. ...| +..-|-.|...|...|++++|+..|.++..++| +++.++..++.+|
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 344455667788899999999999888 5556 577888999999999999999999999999999 9999999999999
Q ss_pred HHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH
Q 004487 591 AVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMK 654 (749)
Q Consensus 591 ~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 654 (749)
...|+.+.|.+.|+...... ..+|+..++..+.+..+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999876542 136777888888877776664
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0014 Score=66.65 Aligned_cols=140 Identities=17% Similarity=0.156 Sum_probs=106.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHH
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSV-LSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCR 525 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 525 (749)
..-.+...|++++|+..++.+.. -.||...|..+ ...+...++.++|.+.++.+.. ..|+ ....-.+..+|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHh
Confidence 33445667888999999999887 46766655544 4468888999999999988874 4666 4455567788889
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 004487 526 SGCFDEAEKLMAQM--PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVK 603 (749)
Q Consensus 526 ~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 603 (749)
.|++.+|..+++.. ..+-|+..|..|..+|...|+..++.... +..|+..|+|++|....
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFL 448 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHH
Confidence 99999999988887 33346888999999999998877776654 44677788999999998
Q ss_pred HHHHhCC
Q 004487 604 KAMRERG 610 (749)
Q Consensus 604 ~~m~~~g 610 (749)
...+++.
T Consensus 449 ~~A~~~~ 455 (484)
T COG4783 449 MRASQQV 455 (484)
T ss_pred HHHHHhc
Confidence 8887764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00027 Score=71.04 Aligned_cols=181 Identities=10% Similarity=0.128 Sum_probs=122.4
Q ss_pred HHhcC-CHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH
Q 004487 421 YAKSG-SLKDAIQTFKEMPE---RNIVSWNALISACAQNGDA--QATLKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLI 493 (749)
Q Consensus 421 y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~ 493 (749)
+.+.| .+++++..++++.+ .+..+|+.....+.+.|+. ++++.+++++.+ ..| |..+|.....++.+.|++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhH
Confidence 33444 45777777766552 3445666554445555543 677888888887 444 455788777788888888
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc---CCH----HHHHHHHHhC-CCCC-CHHhHHHHHHHHHhc----CC
Q 004487 494 EEGLQYFNSMTQKYKLRPKKEHYASMVDILCRS---GCF----DEAEKLMAQM-PFEP-DEIMWSSVINSCRIH----KN 560 (749)
Q Consensus 494 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----g~ 560 (749)
+++++.++.+.+. + .-+...|+.....+.+. |.+ +++.++..++ ...| |...|+.+.+.+... ++
T Consensus 159 ~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 159 EDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred HHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 9999988888754 1 22344555554444443 222 4566666444 5556 588999999888774 34
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC------------------CchhHHHHHHHH
Q 004487 561 LEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAG------------------QWESVSQVKKAM 606 (749)
Q Consensus 561 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m 606 (749)
..+|...+.++++.+| .++.+...|+++|+... ..++|.++.+.+
T Consensus 237 ~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 237 DPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred chhHHHHHHHhhcccC-CcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 5679999999999998 89999999999998743 235677777776
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3e-05 Score=81.72 Aligned_cols=217 Identities=17% Similarity=0.141 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhccc
Q 004487 310 VKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAEL 389 (749)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 389 (749)
-..-..+...+.++|-...|..+|+++. .|...|..|...|+..+|..+..+-.+
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le-------------------- 452 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE-------------------- 452 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--------------------
Confidence 3344455555556666666666665432 344555555555555555555544443
Q ss_pred CcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004487 390 ASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMV 469 (749)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 469 (749)
-+||...|..+.+......-+++|.++++....+--..|+.+ ..+.++++++.+.|+.-.
T Consensus 453 -----------------k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl 512 (777)
T KOG1128|consen 453 -----------------KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSL 512 (777)
T ss_pred -----------------CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHh
Confidence 234444455555544444445666666655432211111111 223577788888877766
Q ss_pred HCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCH
Q 004487 470 QSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQM-PF-EPDE 545 (749)
Q Consensus 470 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~ 545 (749)
+ +.|= ..||-.+..+..+.++++.+.+.|.... .+.|+ .+.|+.+-.+|.+.|+..+|...+++. .. .-+.
T Consensus 513 ~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 513 E--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred h--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC
Confidence 6 3333 3467777777777788888888777666 34554 456777777777777777777777666 22 2235
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 546 IMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 546 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
.+|...+-....-|.++.|.+++.++.++..
T Consensus 588 ~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 588 QIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred eeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 5666666666777777777777777766543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.8e-05 Score=77.10 Aligned_cols=214 Identities=14% Similarity=0.161 Sum_probs=160.5
Q ss_pred HccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---ccHHHHHHHHHhCCChhHHHH
Q 004487 286 ANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHIST---VPWTAMISAYVQKGNLEEALN 362 (749)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~ 362 (749)
-+.|++..|.-.++..++.. +.+...|.-|....+..++-..|+..+++..+.|+ ...-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 35677777777777777765 45778888888888888888889999888876544 446666778999999999999
Q ss_pred HHHHHHHCCCC-----c---CHHhHHHHHHHhcccCcHHHHHHHH-HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004487 363 LFIEMCRANIS-----A---DQATFASILRASAELASLSLGKQLH-SFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQT 433 (749)
Q Consensus 363 l~~~m~~~g~~-----p---~~~t~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 433 (749)
.++.-.....+ + +..+-.. ........+....++| +.....+..+|+.+...|.-.|--.|++++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99888653210 0 0000000 1222233344455544 4445556668888899999999999999999999
Q ss_pred HhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhH
Q 004487 434 FKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMT 504 (749)
Q Consensus 434 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 504 (749)
|+... ..|...||-|...++...+.++|++.|.+.++ ++|+.+ ....|.-+|...|.+++|.++|-...
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99876 34678999999999999999999999999999 899976 55567778999999999999886554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0025 Score=61.40 Aligned_cols=328 Identities=15% Similarity=0.144 Sum_probs=197.3
Q ss_pred HHHHHHHcCCChHHHHHHHccCCCCCcchHHHHH---HHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC
Q 004487 214 ALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMI---TCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLD 290 (749)
Q Consensus 214 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 290 (749)
-|...+...|++.+|..-|....+-|+..|-++. ..|...|+..-|+.=+.+..+. +||-..-
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A------------ 108 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA------------ 108 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH------------
Confidence 3455556678888888888888887887777765 3677778777777777766542 4442110
Q ss_pred hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004487 291 LQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRA 370 (749)
Q Consensus 291 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 370 (749)
+ +. -...+.|.|.++.|..-|+.+.+.++.- +....++.+.-..++-..
T Consensus 109 ----R------iQ------------Rg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~-------- 157 (504)
T KOG0624|consen 109 ----R------IQ------------RGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV-------- 157 (504)
T ss_pred ----H------HH------------hchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH--------
Confidence 0 00 1123567777777777777765433211 011111111111111111
Q ss_pred CCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHH
Q 004487 371 NISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNA 447 (749)
Q Consensus 371 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~ 447 (749)
....+..+...|+...+......+++.. +.|...+..-..+|...|++..|+.-+.... ..+....--
T Consensus 158 --------l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yk 228 (504)
T KOG0624|consen 158 --------LVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYK 228 (504)
T ss_pred --------HHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHH
Confidence 1122223344556666666665555532 3466666677778888888888776555433 455666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHH-------H--HHHhccCCHHHHHHHHHHhHHhcCCCCC--
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSGYQPDSVS----LLSV-------L--SACSHCGLIEEGLQYFNSMTQKYKLRPK-- 512 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~l-------l--~a~~~~g~~~~a~~~~~~m~~~~~~~p~-- 512 (749)
+-..+.+.|+.+.++...++-++ +.||... |..| - ......+.|.++++-.+...+. .|.
T Consensus 229 is~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~ 303 (504)
T KOG0624|consen 229 ISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEET 303 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCccc
Confidence 66677778888888887777776 6677542 1111 0 1123355666666666655532 444
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 004487 513 ---KEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMS 587 (749)
Q Consensus 513 ---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 587 (749)
...+..+-..+...|++.+|++.-.+. .+.|| +.++---..+|.....++.|+.-|+++.+.++ .|..+-.
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~-sn~~~re--- 379 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE-SNTRARE--- 379 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-ccHHHHH---
Confidence 223345556777888999999888776 66776 77777777888888999999999999999998 6554432
Q ss_pred HHHHHcCCchhHHHHHHHHHhCCC
Q 004487 588 NIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 588 ~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
| .+.|.++.+...++..
T Consensus 380 ------G-le~Akrlkkqs~kRDY 396 (504)
T KOG0624|consen 380 ------G-LERAKRLKKQSGKRDY 396 (504)
T ss_pred ------H-HHHHHHHHHHhccchH
Confidence 2 2556666655544433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.6e-05 Score=72.72 Aligned_cols=182 Identities=12% Similarity=0.069 Sum_probs=126.7
Q ss_pred cCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-cc---hH
Q 004487 374 ADQATFASILRASAELASLSLGKQLHSFVIRSGFM-S-NVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RN-IV---SW 445 (749)
Q Consensus 374 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~---~~ 445 (749)
.....+......+...|+++.|...+..+.+.... + ....+..+...|.+.|++++|...|+++.+ |+ .. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777778889999999999999988775432 1 124667788999999999999999998863 32 22 45
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 004487 446 NALISACAQN--------GDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHY 516 (749)
Q Consensus 446 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 516 (749)
..+..++.+. |+.++|.+.|+++.. ..|+.. ....+..... ... ... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~------~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRN------RLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHH------HHH---------HHH
Confidence 5555556554 788999999999988 456543 2222211100 000 000 112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 517 ASMVDILCRSGCFDEAEKLMAQM----PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 517 ~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
..+.+.|.+.|++++|...+++. |-.| ....|..+..++...|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24667788999999999988887 2233 356888899999999999999998888776554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-05 Score=69.86 Aligned_cols=99 Identities=8% Similarity=0.024 Sum_probs=88.4
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHH
Q 004487 509 LRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAM 586 (749)
Q Consensus 509 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 586 (749)
+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...|+++++++| .++..+..+
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~l 98 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQT 98 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHH
Confidence 4454 3556788899999999999999998 5556 688999999999999999999999999999999 999999999
Q ss_pred HHHHHHcCCchhHHHHHHHHHhCC
Q 004487 587 SNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 587 ~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
+.++...|++++|...+....+..
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999987653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00013 Score=80.93 Aligned_cols=140 Identities=13% Similarity=0.041 Sum_probs=116.9
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHH
Q 004487 440 RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYA 517 (749)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 517 (749)
.++..+-.|.....+.|.+++|..+++...+ +.||.. .+..+..++.+.+.+++|+...++... ..|+ .....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3467778888888999999999999999999 788876 777888899999999999999988874 4564 56777
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHH
Q 004487 518 SMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVA 585 (749)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 585 (749)
.+..++...|++++|..+|++. ...|+ ..+|-++..++...|+.++|...|+++++... +....|..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~ 227 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTR 227 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHH
Confidence 8889999999999999999998 33444 78899999999999999999999999999876 44455443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00061 Score=77.08 Aligned_cols=212 Identities=12% Similarity=0.145 Sum_probs=164.2
Q ss_pred CCc-chHHHHHHHHHccCChHHHHHHHHHHHHhc-C---CcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-Cc-ccHH
Q 004487 273 RSQ-FPFSTLLSVVANKLDLQIGRQIHTQTIVTT-A---ISEVKVANSLVDMYAKCGRFEEAKEIFANLSHI-ST-VPWT 345 (749)
Q Consensus 273 p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~ 345 (749)
||+ ..|..-|....+.++.+.|+.+.+.+++.- + .--..+|.+++++-.--|.-+...++|++..+- |. ..|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 443 345555666667777777777777777653 1 123467888888888888888899999988763 33 3388
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhc
Q 004487 346 AMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGF-MSNVFSGSALLDMYAKS 424 (749)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~ 424 (749)
.|...|.+.+.+++|-++|+.|.+. ..-....|...+..+.+..+-+.|..++..+.+.-. .-.+.+..-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999875 335667888888888888888899998888777532 23456667778888999
Q ss_pred CCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH
Q 004487 425 GSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV--SLLSVLS 485 (749)
Q Consensus 425 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~ 485 (749)
|+.+.++.+|+.... .-...|+..|..-.++|+.+.+..+|++....++.|-.. .|.-.|.
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 999999999998873 457899999999999999999999999999998887653 4444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.3e-05 Score=79.33 Aligned_cols=189 Identities=15% Similarity=0.142 Sum_probs=111.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004487 406 GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLS 485 (749)
Q Consensus 406 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 485 (749)
+++|--..-..+...+.++|-...|..+|++. ..|--.|.+|...|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555555566777777778888888877764 3566677777777777777777777666 4677777777777
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHH
Q 004487 486 ACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEF 563 (749)
Q Consensus 486 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 563 (749)
..-...-+++|+++++....+ .-..+.....+.+++.++.+.++.- .+.| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 766666677777776654432 0001111122345555555555443 3333 24455555555555555555
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 564 AKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 564 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
|.+.|...+.++| .+...|+.++.+|.+.|+-.+|...+++..+..
T Consensus 538 av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 5555555555555 555555555555555555555555555554443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00029 Score=65.84 Aligned_cols=155 Identities=11% Similarity=0.172 Sum_probs=116.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 004487 418 LDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGL 497 (749)
Q Consensus 418 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 497 (749)
+-.|.+.|+++......+.+..+. ..+...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456788888777655544332221 01223567788888888877742 445668888888999999999999
Q ss_pred HHHHHhHHhcCCCC-ChHHHHHHHHHH-HHcCC--HHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004487 498 QYFNSMTQKYKLRP-KKEHYASMVDIL-CRSGC--FDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQL 571 (749)
Q Consensus 498 ~~~~~m~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 571 (749)
..|+...+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998874 455 567788888764 67787 59999999998 5566 5778888888999999999999999999
Q ss_pred hcCCCCCCchhHHH
Q 004487 572 FKMEKLRDAAPYVA 585 (749)
Q Consensus 572 ~~~~~~~~~~~~~~ 585 (749)
+++.| ++..-+..
T Consensus 171 L~l~~-~~~~r~~~ 183 (198)
T PRK10370 171 LDLNS-PRVNRTQL 183 (198)
T ss_pred HhhCC-CCccHHHH
Confidence 99999 66555443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.3e-06 Score=53.22 Aligned_cols=35 Identities=46% Similarity=0.746 Sum_probs=32.7
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 004487 140 VSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSD 174 (749)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 174 (749)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.2e-06 Score=52.83 Aligned_cols=34 Identities=32% Similarity=0.714 Sum_probs=31.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004487 443 VSWNALISACAQNGDAQATLKSFEDMVQSGYQPD 476 (749)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 476 (749)
.+||+||.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0002 Score=66.71 Aligned_cols=135 Identities=14% Similarity=0.136 Sum_probs=101.6
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHhHHH
Q 004487 473 YQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSS 550 (749)
Q Consensus 473 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 550 (749)
..|+......+-.++...|+-+....+....... -..+......++....+.|++.+|...+.+. +-.||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 3454433355556677777777777777665432 2334455566888888888888888888887 44457888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
+..+|-+.|+.++|...|.+++++.| .++..+..|+-.|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888 888888888888888888888888888776554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0019 Score=65.58 Aligned_cols=178 Identities=11% Similarity=0.068 Sum_probs=129.1
Q ss_pred CCHHHHHHHHhhCCC------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 004487 425 GSLKDAIQTFKEMPE------RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQ 498 (749)
Q Consensus 425 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 498 (749)
.++.+++..-+.++. ++...+...+.+.........+..++. +... +--........-.+...|..++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~--~~~~aa~YG~A~~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK--RGGLAAQYGRALQTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC--ccchHHHHHHHHHHHHhcccchHHH
Confidence 345566666666662 344455555554433333223332222 2222 1111222223334567899999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 499 YFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 499 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
.++.+... .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-++..++.+.|+..+|+.+++.....+|
T Consensus 328 ~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 99998864 3345666677889999999999999999998 66776 77788889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 577 LRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 577 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
.|+..|..|+..|...|+..++..-+.++-.
T Consensus 406 -~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 406 -EDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred -CCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999999999999998887643
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00056 Score=63.75 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=58.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCC
Q 004487 483 VLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKN 560 (749)
Q Consensus 483 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 560 (749)
........|++.+|...|++... .-++|.+.|+.+.-+|.+.|++++|..-|.+. .+.| ++...+.|...+...||
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444445555555555544442 22334445555555555555555555444444 2333 24444555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 004487 561 LEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQV 602 (749)
Q Consensus 561 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 602 (749)
.+.|+.++.......+ .+...-..|.-.....|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhh
Confidence 5555555555555554 4555555555555555555555544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00022 Score=73.11 Aligned_cols=123 Identities=13% Similarity=0.165 Sum_probs=102.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHH
Q 004487 479 SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCR 556 (749)
Q Consensus 479 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 556 (749)
-...|+..+...++++.|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| |...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4456667777888999999999998854 355 4455788888888888999998887 3334 5666666667788
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 557 IHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 557 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
..++.+.|+.+++++.++.| .+..+|..|+.+|...|++++|...++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999 999999999999999999999999998774
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00081 Score=74.75 Aligned_cols=142 Identities=9% Similarity=0.139 Sum_probs=116.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHH
Q 004487 406 GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RN-IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV-SLL 481 (749)
Q Consensus 406 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 481 (749)
....+...+-.|.......|.+++|..+++...+ || ...+..+...+.+.+++++|+..+++... ..|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 3455688888899999999999999999998873 44 55777788999999999999999999998 567766 555
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHhHHHHH
Q 004487 482 SVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSSVI 552 (749)
Q Consensus 482 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 552 (749)
.+..++.+.|.+++|..+|++.... .| +...+..+..++-..|+.++|...|++. ...|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 6666788999999999999999852 34 3678888999999999999999999988 3445555655554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-05 Score=50.76 Aligned_cols=34 Identities=41% Similarity=0.653 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 004487 139 SVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKP 172 (749)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 172 (749)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0001 Score=64.51 Aligned_cols=95 Identities=23% Similarity=0.351 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 004487 514 EHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYA 591 (749)
Q Consensus 514 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (749)
.....+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+| .+...+..++.+|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 44556667777788888888887776 3344 466777777778888888888888888888888 88888888888888
Q ss_pred HcCCchhHHHHHHHHHhC
Q 004487 592 VAGQWESVSQVKKAMRER 609 (749)
Q Consensus 592 ~~g~~~~a~~~~~~m~~~ 609 (749)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.6e-05 Score=50.06 Aligned_cols=33 Identities=42% Similarity=0.851 Sum_probs=27.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004487 443 VSWNALISACAQNGDAQATLKSFEDMVQSGYQP 475 (749)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 475 (749)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888777
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0028 Score=71.34 Aligned_cols=232 Identities=9% Similarity=0.129 Sum_probs=113.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCccc-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 004487 309 EVKVANSLVDMYAKCGRFEEAKEIFANLSH--ISTVP-WTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRA 385 (749)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 385 (749)
+...+..|+..|...+++++|.++.+...+ |+... |-.+...+.+.++..++..+ . ++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhhh
Confidence 345556666667677777777776665432 22222 22222244555554444333 1 2222
Q ss_pred hcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHH
Q 004487 386 SAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATL 462 (749)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 462 (749)
.....+......++..+.+.+ .+...+..|..+|-+.|+.++|..+++++.+ .|+...|.+.-.|+.. +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 222222222223333333321 2233445556666666666666666665552 3445555555555555 666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 004487 463 KSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQMPF 541 (749)
Q Consensus 463 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 541 (749)
+++.+.... +....++..+.++|..+.. ..|+ ...+--+..... ...+.
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~------------~~~~~ 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVL------------GHREF 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHH------------hhhcc
Confidence 666555442 3334455555555555552 1222 111111111111 11111
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 004487 542 EPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYA 591 (749)
Q Consensus 542 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (749)
.--..+|--|-.-|...++++++..+++.+++.+| .|..+..-++..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 22233444455556667777777777777777777 66666666666665
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00048 Score=70.68 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 004487 412 FSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSHC 490 (749)
Q Consensus 412 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 490 (749)
....+|+..+...++++.|.++|+++.+.++..+..|+..+...++..+|++++++.... .| |...+..-...|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 334456667777888999999999988777777777888888888888999999888863 34 444555555568888
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Q 004487 491 GLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQMPFEPD 544 (749)
Q Consensus 491 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 544 (749)
++.+.|+++.+++.. +.|+ ..+|..|+..|...|++++|+-.++.+|+.|.
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 999999999988874 4665 45888999999999999999999998876543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.001 Score=66.90 Aligned_cols=187 Identities=12% Similarity=0.123 Sum_probs=132.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc
Q 004487 416 ALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNG-DAQATLKSFEDMVQSGYQPDS-VSLLSVLSACSHC 490 (749)
Q Consensus 416 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 490 (749)
.+-..+.+.+..++|....+++.+ .+...|+..-..+...| ++++++..++++.+. .|+. .+|......+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHc
Confidence 334445566778888888887764 23456666655666666 679999999999984 4443 3565554445555
Q ss_pred CC--HHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhc---CC--
Q 004487 491 GL--IEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIH---KN-- 560 (749)
Q Consensus 491 g~--~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~-- 560 (749)
|. .++++.+++.+.+ +.| +...|+...-++.+.|++++|++.++++ ...| |..+|+......... |.
T Consensus 120 ~~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 65 3678888888874 345 5667887888888899999999999998 4444 577888776665443 22
Q ss_pred --HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc----CCchhHHHHHHHHHh
Q 004487 561 --LEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVA----GQWESVSQVKKAMRE 608 (749)
Q Consensus 561 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 608 (749)
.+.+.....++++..| .|..+|..+..++... ++..+|.++.....+
T Consensus 197 ~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 197 AMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred ccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 3567788889999999 9999999999999873 445567666665433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00065 Score=59.44 Aligned_cols=113 Identities=13% Similarity=0.148 Sum_probs=85.1
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 004487 464 SFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PF 541 (749)
Q Consensus 464 ~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 541 (749)
.+++... ..|+.. ....+...+...|++++|.+.|+.+... -+.+...+..+...+.+.|++++|.+.+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 455543 4556666788889999999998887753 2335677788888888999999999888877 44
Q ss_pred CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 542 EP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 542 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
.| +...|..+...+...|+.+.|...++++++..| .+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICG-ENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccch
Confidence 45 467777778888999999999999999999998 5544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.013 Score=54.80 Aligned_cols=115 Identities=9% Similarity=0.098 Sum_probs=77.0
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHH----HHHHHHHHcCCHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHH
Q 004487 489 HCGLIEEGLQYFNSMTQKYKLRPKKEHYA----SMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSSVINSCRIHKNLE 562 (749)
Q Consensus 489 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~ 562 (749)
+..+.+-|.+.++.|.+ +. +..+.+ ++|....-.+.+.+|.-+|++| ...|+..+.+.....|...|+++
T Consensus 149 k~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 34455555555555542 11 222222 3333333445677777777777 35677788888888888899999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhH-HHHHHHHHh
Q 004487 563 FAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESV-SQVKKAMRE 608 (749)
Q Consensus 563 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 608 (749)
+|+.+++.++..++ .++.+...++-+-...|+-.++ .+.+.+++.
T Consensus 225 eAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 225 EAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999998 8888888888877788876554 455555543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.1e-05 Score=46.98 Aligned_cols=31 Identities=45% Similarity=0.800 Sum_probs=27.1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 004487 140 VSFNALITGFAKEGLNEEAIKLFVEMQHLGF 170 (749)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 170 (749)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.12 Score=56.82 Aligned_cols=160 Identities=10% Similarity=0.053 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 004487 444 SWNALISACAQNGDAQ---ATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMV 520 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 520 (749)
+-|.|+..+.+.++.. +|+-+++.-... -+-|..+-..++..|+-.|-...|.+++..+.-+ .|..|.--|- +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HH
Confidence 4567888888888765 455555555542 2335557778889999999999999999988765 5666543332 23
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC-CCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CCCchhHHHHHHHHHHcC
Q 004487 521 DILCRSGCFDEAEKLMAQM-PF-EPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEK---LRDAAPYVAMSNIYAVAG 594 (749)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~-~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g 594 (749)
..+...|++..|...++.. .+ ..+ ..+-. +|..-.++|.+..-.++..-=-.+.. ..-..+=..........+
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455566766666555443 00 000 01111 22222345655555444322112211 011222234556667778
Q ss_pred CchhHHHHHHHHH
Q 004487 595 QWESVSQVKKAMR 607 (749)
Q Consensus 595 ~~~~a~~~~~~m~ 607 (749)
+.+.-.+.++.|+
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8877777777775
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0026 Score=58.92 Aligned_cols=181 Identities=14% Similarity=0.186 Sum_probs=119.0
Q ss_pred cCCHHHHHHHHhhCCC--------CCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCCH
Q 004487 424 SGSLKDAIQTFKEMPE--------RNIV-SWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLS-ACSHCGLI 493 (749)
Q Consensus 424 ~g~~~~A~~~~~~~~~--------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~ 493 (749)
..+.++..+++.++.. ++.. .|..++-+....|+.+.|...++++... + |...-...+-. -+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3567777777776651 2221 3334455556677888888888887774 3 55432222211 24557888
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004487 494 EEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSSVINSCRIHKNLEFAKKAADQL 571 (749)
Q Consensus 494 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 571 (749)
++|.++++.+.++ -+.|..++--=+-++-..|+--+|++-+... .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888888888764 1334455555556666677766777666555 45567888888888888888888888888888
Q ss_pred hcCCCCCCchhHHHHHHHHHHcC---CchhHHHHHHHHHhC
Q 004487 572 FKMEKLRDAAPYVAMSNIYAVAG---QWESVSQVKKAMRER 609 (749)
Q Consensus 572 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~ 609 (749)
+-..| .++..+-.++..+...| +.+-+.+++.+..+.
T Consensus 181 ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 88888 88888888888776666 344455555555443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0013 Score=58.23 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=25.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHH
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKK 604 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 604 (749)
|...+...|++++|+..++.. .-.+ ..+..+..++++|.+.|++++|...++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~-~~~~-~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI-PDEA-FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-cCcc-hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444555555555555442 1122 334445555555555555555555554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.1e-05 Score=46.53 Aligned_cols=31 Identities=32% Similarity=0.621 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004487 443 VSWNALISACAQNGDAQATLKSFEDMVQSGY 473 (749)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 473 (749)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0091 Score=55.42 Aligned_cols=163 Identities=15% Similarity=0.241 Sum_probs=113.5
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCcchHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 004487 420 MYAKSGSLKDAIQTFKEMPERNIVSWNAL---ISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEG 496 (749)
Q Consensus 420 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 496 (749)
+..-+|+.+.|..+++.+...=+.++... ..-+-..|++++|+++++...+.. +.|.+++..=+...-..|.--+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence 34455677777777766553212222211 112345788999999999998865 55666777666666677777788
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 004487 497 LQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRI---HKNLEFAKKAADQL 571 (749)
Q Consensus 497 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~ 571 (749)
++-+....+. +..|.+.|.-+.++|...|++++|.--++++ -..| ++..+..+...+.- ..|++.+.+.|.+.
T Consensus 140 Ik~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 140 IKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888764 5678899999999999999999999999888 3445 34455555555433 33789999999999
Q ss_pred hcCCCCCCchhHHHH
Q 004487 572 FKMEKLRDAAPYVAM 586 (749)
Q Consensus 572 ~~~~~~~~~~~~~~l 586 (749)
+++.| .+...+.-+
T Consensus 218 lkl~~-~~~ral~GI 231 (289)
T KOG3060|consen 218 LKLNP-KNLRALFGI 231 (289)
T ss_pred HHhCh-HhHHHHHHH
Confidence 99988 665554433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.007 Score=56.62 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=111.3
Q ss_pred cCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 004487 455 NGDAQA-TLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAE 533 (749)
Q Consensus 455 ~g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 533 (749)
-++-+. --++.+.+.......|......-...|.+.|+.++|++.... .-+.+....=+..+.|..+++-|.
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-------~~~lE~~Al~VqI~lk~~r~d~A~ 157 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-------GENLEAAALNVQILLKMHRFDLAE 157 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 344333 344556666655555545444455569999999999998854 234555656677888999999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHH----hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 534 KLMAQMPFEPDEIMWSSVINSCR----IHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 534 ~~~~~~~~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
+.+++|..-.+..+.+.|..++. -.+.+..|.-+|+++-+.-| +.+.+.+..+.++...|+|++|..+++...++
T Consensus 158 ~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~-~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 158 KELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTP-PTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccC-CChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999954445666666666653 23468999999999999888 89999999999999999999999999998776
Q ss_pred C
Q 004487 610 G 610 (749)
Q Consensus 610 g 610 (749)
.
T Consensus 237 d 237 (299)
T KOG3081|consen 237 D 237 (299)
T ss_pred c
Confidence 3
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00055 Score=55.16 Aligned_cols=92 Identities=15% Similarity=0.257 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc
Q 004487 516 YASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVA 593 (749)
Q Consensus 516 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 593 (749)
+..+...+...|++++|.+.+++. ...|+ ...|..+...+...++++.|...+++..+..| .+...+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHH
Confidence 344566677778888888887776 33343 45666677777788888888888888888888 7777888888888888
Q ss_pred CCchhHHHHHHHHHh
Q 004487 594 GQWESVSQVKKAMRE 608 (749)
Q Consensus 594 g~~~~a~~~~~~m~~ 608 (749)
|++++|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 888888888877654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0032 Score=55.76 Aligned_cols=123 Identities=19% Similarity=0.209 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHHHH
Q 004487 445 WNALISACAQNGDAQATLKSFEDMVQSGYQPDS----VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKK--EHYAS 518 (749)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ 518 (749)
|..++..+ ..++...+.+.++.+.... |+. .....+...+...|++++|...|+..... .-.|.. ...-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 33444444 3677777777777777742 332 23333445677778888888888877754 222221 22334
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004487 519 MVDILCRSGCFDEAEKLMAQMPFE-PDEIMWSSVINSCRIHKNLEFAKKAADQL 571 (749)
Q Consensus 519 li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 571 (749)
|...+...|++++|+..++..+.. .....+..+...+...|+.++|...|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 567777888888888888775322 23455666667788888888888888765
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.045 Score=62.00 Aligned_cols=168 Identities=11% Similarity=0.079 Sum_probs=91.3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 004487 239 DGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVD 318 (749)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 318 (749)
+...|..|+..|...+++++|.++.+..... .|+...+-..+ ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~----------------------------------G~ 73 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYIS----------------------------------GI 73 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHH----------------------------------HH
Confidence 4557888888888888899988888865543 45444332111 11
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHH
Q 004487 319 MYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQL 398 (749)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 398 (749)
.|.+.++.+++..+ .++.......++.-...+...|... .-+...+..+..+|.+.|..+++..+
T Consensus 74 l~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~ 138 (906)
T PRK14720 74 LSLSRRPLNDSNLL-------------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGV 138 (906)
T ss_pred HHHhhcchhhhhhh-------------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHH
Confidence 23333333333222 1222222222232222222223221 12233445555556666666666666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004487 399 HSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQ 470 (749)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (749)
++.+++.. +.++.+.|.+...|+.. ++++|.+++.+. +..|...+++.++.++|.++..
T Consensus 139 yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 139 WERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHh
Confidence 66666655 45666677777777777 777777766553 2235556677777777777766
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00095 Score=68.85 Aligned_cols=82 Identities=12% Similarity=0.142 Sum_probs=38.8
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 004487 525 RSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQV 602 (749)
Q Consensus 525 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 602 (749)
..|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++| .+...|..++.+|...|++++|...
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344444444444444 2223 233444444444445555555555555555555 4444555555555555555555555
Q ss_pred HHHHH
Q 004487 603 KKAMR 607 (749)
Q Consensus 603 ~~~m~ 607 (749)
++...
T Consensus 93 ~~~al 97 (356)
T PLN03088 93 LEKGA 97 (356)
T ss_pred HHHHH
Confidence 54443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=9.1e-05 Score=58.43 Aligned_cols=77 Identities=12% Similarity=0.213 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHhC-CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 004487 527 GCFDEAEKLMAQM-PFEP---DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQV 602 (749)
Q Consensus 527 g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 602 (749)
|++++|+.+++++ ...| +...|-.+...+.+.|++++|..++++ .+.++ .+......++.+|...|++++|.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4445555555444 1112 333444455556666666666666666 55555 4445555556666666666666666
Q ss_pred HHH
Q 004487 603 KKA 605 (749)
Q Consensus 603 ~~~ 605 (749)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0013 Score=56.03 Aligned_cols=91 Identities=11% Similarity=0.057 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---chhHHHHHHH
Q 004487 518 SMVDILCRSGCFDEAEKLMAQM-PFEPD----EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRD---AAPYVAMSNI 589 (749)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 589 (749)
.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...++++....| .+ ...+..++.+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP-KSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC-CCCcccHHHHHHHHH
Confidence 3344444445555555544444 11121 22333344455555555555555555555544 21 3345555555
Q ss_pred HHHcCCchhHHHHHHHHHhC
Q 004487 590 YAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 590 ~~~~g~~~~a~~~~~~m~~~ 609 (749)
+...|++++|.+.++.+.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0019 Score=54.84 Aligned_cols=101 Identities=16% Similarity=0.101 Sum_probs=55.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHhHHHHHHH
Q 004487 481 LSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD----EIMWSSVINS 554 (749)
Q Consensus 481 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~ 554 (749)
..+...+...|++++|.+.|+.+...+.-.| ....+..+..++.+.|++++|.+.+++. ...|+ ..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344445555555555555555554321111 1223444555666666666666666554 22222 3455566666
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchh
Q 004487 555 CRIHKNLEFAKKAADQLFKMEKLRDAAP 582 (749)
Q Consensus 555 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 582 (749)
+...|+.+.|...++++++..| .+...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~ 112 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYP-GSSAA 112 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCc-CChhH
Confidence 6777777777777777777777 55443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.14 Score=51.48 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 004487 416 ALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEE 495 (749)
Q Consensus 416 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 495 (749)
.-|.-+...|+...|.++-.+..-||..-|-..+.+++..+++++-.++... .- .++-|..++.+|...|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHH
Confidence 3344455667777777777766667777777777777777777665554321 11 23556666777777777777
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 004487 496 GLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQ 538 (749)
Q Consensus 496 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 538 (749)
|..+...+. +..-+.+|.++|++.+|.+.--+
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 776665421 13346667777777776665444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00031 Score=52.91 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=58.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC-CchhHHHHHHHHHh
Q 004487 544 DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAG-QWESVSQVKKAMRE 608 (749)
Q Consensus 544 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 608 (749)
++.+|..+...+...|++++|+..|+++++.+| .++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 467888899999999999999999999999999 99999999999999999 79999999988754
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00079 Score=64.06 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHh
Q 004487 460 ATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAEKLMAQ 538 (749)
Q Consensus 460 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 538 (749)
+...+-++++..| .-..+.+++.+|+..|...+ .+.|+ ...|..-..+|.+.|.++.|.+-.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3455555555555 34667888999999888887 45664 44555667888999999988888877
Q ss_pred C-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHH
Q 004487 539 M-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYV 584 (749)
Q Consensus 539 ~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 584 (749)
. .+.|. ..+|..|..+|...|++++|++.|+++++++| .+.....
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP-~Ne~~K~ 187 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDP-DNESYKS 187 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCC-CcHHHHH
Confidence 6 66665 67888888889999999999999999999998 6664333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0069 Score=65.34 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=28.0
Q ss_pred CCCcchHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 004487 439 ERNIVSWNALISACAQ--N---GDAQATLKSFEDMVQSGYQPDSV-SLLSV 483 (749)
Q Consensus 439 ~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g~~p~~~-t~~~l 483 (749)
..+...|...+.+... . ++...|..+|++..+ ..||.. .+..+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~l 382 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEK 382 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 4566777777776433 2 236688899999888 677754 34433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0032 Score=60.07 Aligned_cols=96 Identities=19% Similarity=0.320 Sum_probs=79.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcC
Q 004487 450 SACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSG 527 (749)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 527 (749)
.-+.+.+++.+|+..|.+.++ +.| |.+-|..-..||++.|.++.|++-.+... .+.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 446778999999999999999 666 45667777889999999999999887666 46675 468999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHhHHH
Q 004487 528 CFDEAEKLMAQM-PFEPDEIMWSS 550 (749)
Q Consensus 528 ~~~~A~~~~~~~-~~~p~~~~~~~ 550 (749)
++++|.+.|++. .+.|+..+|.+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHH
Confidence 999999999988 88898666543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0023 Score=55.84 Aligned_cols=108 Identities=16% Similarity=0.199 Sum_probs=87.8
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCch
Q 004487 520 VDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWE 597 (749)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 597 (749)
.--+...|++++|..+|+-+ -..| +..-|..|...|...++++.|+..|..+..+++ .|+.++...+.+|...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 34455789999999998877 2223 455688888889999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 004487 598 SVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKK 655 (749)
Q Consensus 598 ~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 655 (749)
.|...++...+ +|+..++..+...+++.+++
T Consensus 123 ~A~~~f~~a~~---------------------------~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 123 KARQCFELVNE---------------------------RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred HHHHHHHHHHh---------------------------CcchHHHHHHHHHHHHHHHc
Confidence 99999998765 24455666677777766654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.042 Score=57.71 Aligned_cols=196 Identities=19% Similarity=0.236 Sum_probs=102.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHH
Q 004487 316 LVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLG 395 (749)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 395 (749)
+.+.++-.|.+.+|.++|.+ +|....|+++|..|..-. ...-+...|+.++-
T Consensus 638 lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD----------~aQE~~~~g~~~eK 689 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD----------YAQEFLGSGDPKEK 689 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH----------HHHHHhhcCChHHH
Confidence 34445667778888777754 566677777777664311 11122233333333
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004487 396 KQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP 475 (749)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 475 (749)
+.+...-.+. .-++.--.+-..++..+|+.++|..+ +..+|-.+-+.++-+++-. .
T Consensus 690 KmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~----~ 745 (1081)
T KOG1538|consen 690 KMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK----A 745 (1081)
T ss_pred HHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----h
Confidence 3332211111 01111112345566667777776544 3344545555555444322 2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHh-------
Q 004487 476 DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMP-FEPDEIM------- 547 (749)
Q Consensus 476 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~------- 547 (749)
+..+...+..-+-+...+.-|-++|.+|-. ...++++....+++++|..+-++.| +.||+..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLA 815 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhh
Confidence 333444444444555666777777776642 2457788888888888888888873 4455321
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004487 548 ----WSSVINSCRIHKNLEFAKKAADQLFK 573 (749)
Q Consensus 548 ----~~~ll~~~~~~g~~~~a~~~~~~~~~ 573 (749)
+.-.-.++.+.|+..+|.++++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 11112344555666666666666543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00069 Score=50.27 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=47.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
+...+...|++++|+..++++++..| .+...+..++.++...|++++|..+++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566778888888888888888888 88888888888888888888888888887654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0065 Score=55.59 Aligned_cols=129 Identities=14% Similarity=0.225 Sum_probs=81.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHH
Q 004487 442 IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD--SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYAS 518 (749)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 518 (749)
...+..+...+...|++++|+..|++..+....++ ...+..+...+.+.|++++|...+++.... .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34566666677777888888888888776433222 245666667777788888888877777642 34 3445555
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 004487 519 MVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 519 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (749)
+..++...|+...+..-++.. ...+++|.+.++++++.+| .+ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p-~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAP-NN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCc-hh---HHHHHHHHHhcCc
Confidence 566666666655544332221 1226778888888888888 44 5556666655554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.29 Score=50.90 Aligned_cols=211 Identities=11% Similarity=0.087 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCC----CCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004487 393 SLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSG---SLKDAIQTFKEMP----ERNIVSWNALISACAQNGDAQATLKSF 465 (749)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (749)
+++..+++..+..-...+..+|.++.+.=-..- ..+.....+++.. ..-..+|-.+++.-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555554433334445544443221111 1334444444443 223456777888777777789999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CC
Q 004487 466 EDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM---PF 541 (749)
Q Consensus 466 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~ 541 (749)
.+..+.+..+ +.....+++.-+ ..++.+-|.++|+.=.+++|- ++.--.+.++-+.+.++-..|..+|++. ..
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 444666666644 467889999999887766543 3445567889999999999999999998 23
Q ss_pred CCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CC-CchhHHHHHHHHHHcCCchhHHHHHHHH
Q 004487 542 EPD--EIMWSSVINSCRIHKNLEFAKKAADQLFKMEK--LR-DAAPYVAMSNIYAVAGQWESVSQVKKAM 606 (749)
Q Consensus 542 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 606 (749)
.|| ..+|..++.--..-||+..+.++-++....-| .. ....-..+.+.|.-.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 444 57999999998999999999999888776555 11 1234446677787777776665555554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.45 Score=52.60 Aligned_cols=212 Identities=13% Similarity=0.088 Sum_probs=120.9
Q ss_pred cCCChHHHHHHHhcCCC--CCcchHHHHHHHH--HcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHH
Q 004487 18 KSGNLATARELFNSMVD--RTAVSWTILIGGY--SQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELI 93 (749)
Q Consensus 18 ~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 93 (749)
..+++..|+...+++.. ||. .|...+.++ .+.|+.++|..+++..... +.. |..|..++-..+...+..+++.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGL-KGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccC-CCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 45677777777777643 332 344555544 5788888888877776544 222 6677777778888888888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhHcCCCh----hHHHHHHccCCCCCcchHHHHHHHHHhC-CChh---------HHH
Q 004487 94 QVHADIIKFGYNSILIICNSLVDSYCKIRCL----DLARRVFKEMPQKDSVSFNALITGFAKE-GLNE---------EAI 159 (749)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~---------~A~ 159 (749)
.++++..... |+......+..+|++.+++ ..|.+++...|++--.-|+.+ +.+.+. ..++ -|.
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHH
Confidence 8888877664 4466666677777776655 456777777666555556543 333222 1221 233
Q ss_pred HHHHHHHHCC-CCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHcCCChHHHHHHHccC
Q 004487 160 KLFVEMQHLG-FKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTN-FVENVFVANALLDLYSKHDCVVEARKLFGEM 235 (749)
Q Consensus 160 ~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 235 (749)
+.++.+.+.+ ---+..-...-+..+...+.+++|..++..-.... ..-+...-+.-++++.+++++.+..++-.++
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 4444444433 11111112222223345566777777764333222 2334444455667777777766655544443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0028 Score=57.76 Aligned_cols=93 Identities=13% Similarity=-0.075 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 004487 513 KEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD----EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMS 587 (749)
Q Consensus 513 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 587 (749)
...|..++..+...|++++|...+++. ...|+ ..+|..+...+...|+.++|+..+++++++.| ....++..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 445566667777788888888888776 23232 35788888889999999999999999999998 8888888888
Q ss_pred HHHH-------HcCCchhHHHHHHHH
Q 004487 588 NIYA-------VAGQWESVSQVKKAM 606 (749)
Q Consensus 588 ~~~~-------~~g~~~~a~~~~~~m 606 (749)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 778888666665544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0097 Score=59.16 Aligned_cols=143 Identities=13% Similarity=0.170 Sum_probs=103.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 004487 443 VSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSA-CSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVD 521 (749)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 521 (749)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 468888888888888999999999998543 2233344444333 444677777999999998764 456778889999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 004487 522 ILCRSGCFDEAEKLMAQM-PFEPDE----IMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIY 590 (749)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 590 (749)
.+.+.|+.+.|..+|++. ..-|.. .+|...+.--...|+++....+.+++.+.-| . ......+++-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~-~-~~~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP-E-DNSLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT-T-S-HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-h-hhHHHHHHHHh
Confidence 999999999999999998 333433 5999999999999999999999999999887 3 33444444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0036 Score=57.33 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 004487 515 HYASMVDILCRSGCFDEAEKLMAQM-PFEPD----EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNI 589 (749)
Q Consensus 515 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 589 (749)
.+..+...+.+.|++++|...+++. ...|+ ...|..+...+...|++++|...++++++..| .+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4455556666667777777666655 22222 35677777788888888888888888888888 778888888888
Q ss_pred HHHcCC
Q 004487 590 YAVAGQ 595 (749)
Q Consensus 590 ~~~~g~ 595 (749)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.023 Score=56.56 Aligned_cols=161 Identities=12% Similarity=0.109 Sum_probs=117.3
Q ss_pred chHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH--
Q 004487 443 VSWNALI-SACAQNGDAQATLKSFEDMVQSGYQPDS-VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYAS-- 518 (749)
Q Consensus 443 ~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-- 518 (749)
.+|-.+- ..+.-.|++++|.+.-....+. .++. .....--.++-..++.+.+...|++.. .+.|+...-..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHh
Confidence 4444432 3456778999998887776663 3322 222222224556788899999998766 45565322221
Q ss_pred -----------HHHHHHHcCCHHHHHHHHHhC-CCCC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 519 -----------MVDILCRSGCFDEAEKLMAQM-PFEP-----DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 519 -----------li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
=.+-..+.|++.+|.+.+.+. .+.| ++-.|.....+..+.|+.++|+.-.+.++++++ .-..
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syik 322 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIK 322 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHH
Confidence 123467899999999999887 5444 455666666778899999999999999999999 8889
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.|..-+++|...++|++|.+-+++..+.
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999987654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.092 Score=52.45 Aligned_cols=111 Identities=18% Similarity=0.346 Sum_probs=49.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhc
Q 004487 417 LLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQN-GDAQATLKSFEDMVQS----GYQPD--SVSLLSVLSACSH 489 (749)
Q Consensus 417 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~ 489 (749)
.++.|.+.|++..|-+++.. +...|-.. |++++|++.|++..+. | .+. ...+..+...+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 34455555555555444333 33444444 5666666666555431 2 111 1234445555666
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC----Ch-HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 004487 490 CGLIEEGLQYFNSMTQKYKLRP----KK-EHYASMVDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 490 ~g~~~~a~~~~~~m~~~~~~~p----~~-~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (749)
.|++++|.++|++.....--.+ +. ..+-..+-++...|+...|.+.+++.
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666666554311111 11 12222233444456666666666654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0074 Score=62.31 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=50.5
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHH
Q 004487 488 SHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFA 564 (749)
Q Consensus 488 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 564 (749)
...|++++|+++|+...+. .| +...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3444555555555544421 22 2334444445555555555555555554 3333 344555555556666666666
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHH
Q 004487 565 KKAADQLFKMEKLRDAAPYVAMSNI 589 (749)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~l~~~ 589 (749)
+..++++++++| .+......+..+
T Consensus 90 ~~~~~~al~l~P-~~~~~~~~l~~~ 113 (356)
T PLN03088 90 KAALEKGASLAP-GDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 666666666666 555555444444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0058 Score=48.93 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 004487 445 WNALISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMT 504 (749)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 504 (749)
|..+...+...|++++|+..+++..+. .|+ ...+..+...+...|++++|.+.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666555552 222 2344444444555555555555554443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.56 Score=50.20 Aligned_cols=284 Identities=15% Similarity=0.161 Sum_probs=129.9
Q ss_pred HHHHHcCCChHHHHHHHccCCCC-----CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC
Q 004487 216 LDLYSKHDCVVEARKLFGEMPEV-----DGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLD 290 (749)
Q Consensus 216 i~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 290 (749)
|.++.+.|++-...++++.-... -..+|+.+...++....|++|.+.|..-.. ....+.++-+...
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHh
Confidence 55566666666666665443221 123566666666666666666666654311 0111222222222
Q ss_pred hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004487 291 LQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRA 370 (749)
Q Consensus 291 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 370 (749)
++.-+. ....++.+....-.+.+|+.+.|.-++|.+.|-+...+. +.+..|...+++.+|.++-+..+-
T Consensus 838 f~~LE~-----la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l- 906 (1189)
T KOG2041|consen 838 FGELEV-----LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQL- 906 (1189)
T ss_pred hhhHHH-----HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccc-
Confidence 221111 112234455555666677777777777766655443332 234555666666666666544322
Q ss_pred CCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHH
Q 004487 371 NISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERN---IVSWNA 447 (749)
Q Consensus 371 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~ 447 (749)
|...|+ +. ..+-+++ ..+ .+ ---|.++.+.|..-+|.+++.+|.++. -+.|--
T Consensus 907 ---~qv~tl---ia--------k~aaqll----~~~-----~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr 962 (1189)
T KOG2041|consen 907 ---PQVQTL---IA--------KQAAQLL----ADA-----NH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLR 962 (1189)
T ss_pred ---hhHHHH---HH--------HHHHHHH----hhc-----ch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHH
Confidence 222221 11 0111111 111 00 123566777777777777776665311 111111
Q ss_pred HHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 004487 448 LISAC----AQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDIL 523 (749)
Q Consensus 448 li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 523 (749)
+-..| .-..+..++++-.++....|...|... +...|...++-++.+..-+ -....||-.|..--
T Consensus 963 ~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFmilAQrq 1031 (1189)
T KOG2041|consen 963 LKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFMILAQRQ 1031 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHHHHHHHH
Confidence 11111 111223344444444444454333221 1223333343333332221 12344555555666
Q ss_pred HHcCCHHHHHHHHHhC----CCCCCHHhHHHHHHH
Q 004487 524 CRSGCFDEAEKLMAQM----PFEPDEIMWSSVINS 554 (749)
Q Consensus 524 ~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~ 554 (749)
...|.++.|++---.+ .+-|-..+|+.|.-+
T Consensus 1032 l~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1032 LFEGRVKDALQTALILSDYEDFLPPAEIYSLLALA 1066 (1189)
T ss_pred HHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHH
Confidence 6778888887654333 344555666655433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.33 Score=48.93 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=73.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC
Q 004487 211 VANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLD 290 (749)
Q Consensus 211 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 290 (749)
+.+..|.-+...|+...|.++-.+..-||..-|-..|.+++..++|++-..+... +-++.-|..++.+|...|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4455566677788889999998888888888899999999999999877765432 2234667777777777777
Q ss_pred hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 004487 291 LQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEI 332 (749)
Q Consensus 291 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 332 (749)
...|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 66666555441 114456666777776666544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0016 Score=51.29 Aligned_cols=80 Identities=21% Similarity=0.364 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHH
Q 004487 455 NGDAQATLKSFEDMVQSGYQ-PDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEA 532 (749)
Q Consensus 455 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 532 (749)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...|+ ....-.+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46677777777777664321 1333444456667777777777777765 2 12222 22223345666666666666
Q ss_pred HHHHHh
Q 004487 533 EKLMAQ 538 (749)
Q Consensus 533 ~~~~~~ 538 (749)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0013 Score=49.22 Aligned_cols=52 Identities=8% Similarity=0.224 Sum_probs=39.7
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 557 IHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 557 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
..|++++|+..++++++..| .+...+..++.+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46778888888888888888 77788888888888888888888887766543
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.091 Score=46.50 Aligned_cols=151 Identities=10% Similarity=0.107 Sum_probs=106.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHHcCCHHH
Q 004487 453 AQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKL-RPKKEHYASMVDILCRSGCFDE 531 (749)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~ 531 (749)
.+.=+++...+-..+-.+ ..|...--..|..+....|+..+|...|++... |+ --|....-.+..+....+++.+
T Consensus 67 ~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 67 QQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHH
Confidence 333344444333333333 567777777788888889999999998887764 43 3456667777788888889999
Q ss_pred HHHHHHhC-CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 532 AEKLMAQM-PFEP---DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 532 A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
|...++.. ...| ++...-.+...+...|..+.|+..|+.++...| ++..-......++++|+.+++..-...+.
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 88888876 2222 123344566778889999999999999999888 55555666788899999888877666654
Q ss_pred hC
Q 004487 608 ER 609 (749)
Q Consensus 608 ~~ 609 (749)
+.
T Consensus 221 d~ 222 (251)
T COG4700 221 DT 222 (251)
T ss_pred HH
Confidence 43
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.4 Score=47.72 Aligned_cols=272 Identities=16% Similarity=0.195 Sum_probs=171.7
Q ss_pred cCCHHHHHHHHHhcC---CCCcccHHHHHHH--HHhCCChhHHHHHHHHHHHCCCCcCH--HhHHHHHHHhcccCcHHHH
Q 004487 323 CGRFEEAKEIFANLS---HISTVPWTAMISA--YVQKGNLEEALNLFIEMCRANISADQ--ATFASILRASAELASLSLG 395 (749)
Q Consensus 323 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a 395 (749)
.|+-..|++.-.+.. ..|-.+.-.++.+ -.-.|+++.|.+-|+.|... |.. .-+..+.-..-+.|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 345555555443322 2333333333332 23467778888888877652 211 1222333334566777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCcc--hHHHHHHHHHh---cCCHHHHHHHH
Q 004487 396 KQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP-----ERNIV--SWNALISACAQ---NGDAQATLKSF 465 (749)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~ 465 (749)
+++-+..-..- +.-.....+.+...+..|+++.|+++.+.-. ++++. .--.|+.+-+. .-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 77666554432 1224456778888889999999999888654 34432 22233333221 23456666665
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 004487 466 EDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM----P 540 (749)
Q Consensus 466 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 540 (749)
.+..+ +.||.+ .-..-..++.+.|++.++-.+++.+-+ ..|.+..+...+ +.|.|+ .+++-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGD--TALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCC--cHHHHHHHHHHHHh
Confidence 55555 788866 444556689999999999999999874 477776654433 344554 333333332 4
Q ss_pred CCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc-CCchhHHHHHHHHHhC
Q 004487 541 FEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVA-GQWESVSQVKKAMRER 609 (749)
Q Consensus 541 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 609 (749)
++|| ..+-.++..+-...|++..|..-.+.+....| ....|.+|+++-... |+-.++...+.+....
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p--res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP--RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc--hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5665 55666667778889999999999999999998 778899999987655 9988888888776654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.019 Score=55.28 Aligned_cols=102 Identities=6% Similarity=-0.008 Sum_probs=85.5
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHh---cCCHHHHHHHHHHHhcCCCCCCchhHH
Q 004487 510 RPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRI---HKNLEFAKKAADQLFKMEKLRDAAPYV 584 (749)
Q Consensus 510 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 584 (749)
+-|.+.|--|...|.+.|++..|..-|.+. .+.| ++..+..+..++.. .....++..++++++.++| .|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHH
Confidence 346788999999999999999999999887 4444 46677777766432 2357889999999999999 9999999
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 004487 585 AMSNIYAVAGQWESVSQVKKAMRERGVR 612 (749)
Q Consensus 585 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 612 (749)
.|+..+...|++.+|...++.|.+....
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999887543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.014 Score=53.38 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=77.5
Q ss_pred cCHHhHHHHHHHhc-----ccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHH
Q 004487 374 ADQATFASILRASA-----ELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNAL 448 (749)
Q Consensus 374 p~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l 448 (749)
.|..+|..++..+. +.|..+-....+..|.+.|+.-|..+|+.|++.+=| |.+- -.. .+.++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n-----------~fQ~~ 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRN-----------FFQAE 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-ccc-----------HHHHH
Confidence 34455555555443 235555556667778888888888888888887754 2221 011 11111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhHHhcCCCC
Q 004487 449 ISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGL-IEEGLQYFNSMTQKYKLRP 511 (749)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p 511 (749)
..- ...+.+-|++++++|...|+-||..|+..+++.+.+.+. +.+.++..-.|-+-.++.|
T Consensus 112 F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP 173 (228)
T PF06239_consen 112 FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINP 173 (228)
T ss_pred hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCC
Confidence 111 124567899999999999999999999999999988765 3444454444544333443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0024 Score=47.31 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=47.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 004487 519 MVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRD 579 (749)
Q Consensus 519 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 579 (749)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..| .+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P-~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP-DN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CC
Confidence 345677888888888888887 5556 477888888888999999999999999999888 54
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0064 Score=48.91 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=67.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHhcCCC-CCCcchHHHHHHhcCCCC--------ChHHHHHHHHHHHHhCCCCchh
Q 004487 39 SWTILIGGYSQKNQFREAFKLFVDMRTDGGS-DPDYVTFATLLSGCSEPD--------TANELIQVHADIIKFGYNSILI 109 (749)
Q Consensus 39 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~ 109 (749)
|-...|..+...+++.....+|+.+++. |+ .|+..+|+.+|.+..+.. .+-....+++.|+..++.|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3455677777789999999999999998 88 999999999999876543 2445678899999999999999
Q ss_pred HHHHHHHHhHc
Q 004487 110 ICNSLVDSYCK 120 (749)
Q Consensus 110 ~~~~li~~~~~ 120 (749)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.016 Score=59.95 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=92.4
Q ss_pred CCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcc
Q 004487 370 ANISADQATFASILRASAELASLSLGKQLHSFVIRS--GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE----RNIV 443 (749)
Q Consensus 370 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~ 443 (749)
.+...+...+..++..+....+++.++.++-..... ....-..+..++|..|.+.|..+.+..+++.=.. ||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345567778888888888888888888877666654 2223344456888888888888888888876543 7888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 004487 444 SWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHC 490 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 490 (749)
++|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888888877777777777777776655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.71 Score=50.10 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004487 474 QPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMWSSVIN 553 (749)
Q Consensus 474 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 553 (749)
.-...|.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+++. .+.-|.-...
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHH
Confidence 3444466666777888899999988775443 5888888888899999999999999888773 2455667889
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHH
Q 004487 554 SCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAM 606 (749)
Q Consensus 554 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 606 (749)
+|.+.|+.++|.+.+-+.-.+ .-...+|.+.|++.+|.++--+-
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHHh
Confidence 999999999999988664322 25778999999999998875543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.013 Score=47.18 Aligned_cols=79 Identities=19% Similarity=0.316 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCCCChHHH
Q 004487 446 NALISACAQNGDAQATLKSFEDMVQSGY-QPDSVSLLSVLSACSHCG--------LIEEGLQYFNSMTQKYKLRPKKEHY 516 (749)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~~ 516 (749)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+..+.. .+-+.+.+++.|... +++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456666667999999999999999999 899999999999866532 345677888888865 789999999
Q ss_pred HHHHHHHHH
Q 004487 517 ASMVDILCR 525 (749)
Q Consensus 517 ~~li~~~~~ 525 (749)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0028 Score=48.24 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=50.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 553 NSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 553 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
..+...++++.|...++++++++| .++..+...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788999999999999999999 899999999999999999999999999887654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.15 Score=53.80 Aligned_cols=261 Identities=14% Similarity=0.159 Sum_probs=127.0
Q ss_pred cchHHHHHHHHHcCCChhHHHHHH---------HHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHH--HHHHHHhCCC
Q 004487 37 AVSWTILIGGYSQKNQFREAFKLF---------VDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQV--HADIIKFGYN 105 (749)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~a~~l~---------~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~ 105 (749)
.+.+.+-+-.|...|.+++|.++- +.+... ..+.-.|+..=.+|.+.++..-.+-+ ++++.+.|-.
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 345566666777888888877642 111111 12334455555666666665544433 3456667777
Q ss_pred CchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 004487 106 SILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGV 185 (749)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 185 (749)
|+... +...++-.|++.+|-++|.+ +|.-..|+++|..|+--. ...-+.
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD----------~aQE~~ 681 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD----------YAQEFL 681 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH----------HHHHHh
Confidence 77654 34455667888888888865 444455555555543210 111122
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004487 186 GLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRE 265 (749)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 265 (749)
..|+.++-+.+...-... ..++.--.+-..++...|+.++|..+. ..+|-.+-+.++-++
T Consensus 682 ~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rk 741 (1081)
T KOG1538|consen 682 GSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARK 741 (1081)
T ss_pred hcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhh
Confidence 223322222222111100 000000123345555666666665543 122222223333332
Q ss_pred HHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHH
Q 004487 266 LQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWT 345 (749)
Q Consensus 266 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 345 (749)
+- ..+..+...+-..+-+...+..|.++|..+-+. .+++++....+++++|..+-++.++--...|-
T Consensus 742 ld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~ 808 (1081)
T KOG1538|consen 742 LD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYM 808 (1081)
T ss_pred cc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccc
Confidence 21 112223333333344455555566666554332 35777888889999999988888763332222
Q ss_pred HHHHHHHhCCChhHHHHHH
Q 004487 346 AMISAYVQKGNLEEALNLF 364 (749)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~ 364 (749)
....-++...++++|.+.|
T Consensus 809 pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred hHHHHhhhhhhHHHHHHHH
Confidence 2223333344444444333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.01 Score=58.97 Aligned_cols=129 Identities=14% Similarity=0.144 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH-cCCHHHHHHHHHhC--CCCCCHHhHHHHHHH
Q 004487 478 VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCR-SGCFDEAEKLMAQM--PFEPDEIMWSSVINS 554 (749)
Q Consensus 478 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~ 554 (749)
.+|..++...-+.+..+.|..+|....+.. .-+...|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467888888889999999999999998432 2234556555555444 56666699999998 444578899999999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCC---chhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 555 CRIHKNLEFAKKAADQLFKMEKLRD---AAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 555 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
+...++.+.|..+|++.+..-+ .+ ...|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~-~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLP-KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSS-CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765 33 358889999999999999999999998775
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.066 Score=48.71 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=51.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 004487 442 IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD--SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYAS 518 (749)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 518 (749)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+..++..... .|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 34566666777778888888888888876432221 236667777788888888888888776632 332 334444
Q ss_pred HHHHHH
Q 004487 519 MVDILC 524 (749)
Q Consensus 519 li~~~~ 524 (749)
+...+.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 554554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.17 Score=49.01 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCccc------HHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004487 319 MYAKCGRFEEAKEIFANLSHISTVP------WTAMISAYVQKGNLEEALNLFIEMCRA 370 (749)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~l~~~m~~~ 370 (749)
.+.+.|++++|.+.|+.+....+.+ .-.+..+|.+.+++++|...|++..+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456788888888888876533332 123456777888888888888888774
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.018 Score=57.16 Aligned_cols=130 Identities=9% Similarity=0.089 Sum_probs=93.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh---HHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CC-CCCHH
Q 004487 479 SLLSVLSACSHCGLIEEGLQYFNSM---TQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-------PF-EPDEI 546 (749)
Q Consensus 479 t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 546 (749)
.|..|.+.|.-.|+++.|+..++.- .+++|-.. ....++.+..++.-.|+++.|.+.++.. +- ...+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666666788999999877642 33444333 2356778888999999999999988765 21 12344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCC-----CCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKME-----KLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 547 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
+.-+|.+.|....+++.|+..+++-+.+. ......+|..|+++|...|..++|..+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55678888888889999998887655421 124567899999999999999999988776543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.022 Score=59.01 Aligned_cols=110 Identities=13% Similarity=0.035 Sum_probs=53.8
Q ss_pred CCCChhhHHHHHHHHhCCCChHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHcCCChHHHHHHHccCCC----CCcchH
Q 004487 170 FKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTN--FVENVFVANALLDLYSKHDCVVEARKLFGEMPE----VDGVSY 243 (749)
Q Consensus 170 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~ 243 (749)
.+.+...+..++..+....+++.++.++-...... ...-..+..+++..|.+.|..+.+..++..=.. +|..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 44466666666666666666666666655554431 111122333445555555544444444443322 444444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHH
Q 004487 244 NVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFS 279 (749)
Q Consensus 244 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 279 (749)
|.++..+.+.|++..|.++..+|...+...+..|+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~ 177 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQA 177 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHH
Confidence 444444444455555555444444444444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0033 Score=47.26 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcC-CHHHHHHHHHHHhcCCC
Q 004487 513 KEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHK-NLEFAKKAADQLFKMEK 576 (749)
Q Consensus 513 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~ 576 (749)
...|..+...+...|++++|++.|++. ...| +...|..+..++...| +.++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666777777788888888877776 4445 3667777888888888 68888888888888876
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.037 Score=48.23 Aligned_cols=94 Identities=9% Similarity=0.116 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC--C-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 004487 413 SGSALLDMYAKSGSLKDAIQTFKEMP--E-RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACS 488 (749)
Q Consensus 413 ~~~~li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 488 (749)
..-.+...+...|++++|.++|+-+. . .+..-|-.|...+-..|++++|+..|...... .|| ..++-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHH
Confidence 33445556677888888888888765 2 34566777888888888888888888888884 454 457777777888
Q ss_pred ccCCHHHHHHHHHHhHHhcC
Q 004487 489 HCGLIEEGLQYFNSMTQKYK 508 (749)
Q Consensus 489 ~~g~~~~a~~~~~~m~~~~~ 508 (749)
..|+.+.|++.|+......+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhc
Confidence 88888888888887775433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0028 Score=47.44 Aligned_cols=59 Identities=22% Similarity=0.432 Sum_probs=32.3
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHHH
Q 004487 489 HCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWSS 550 (749)
Q Consensus 489 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 550 (749)
..|++++|+++|+.+... .| +...+..+..+|.+.|++++|.++++++ ...|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 456666666666666543 23 4455555666666666666666666666 34455333333
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.041 Score=46.18 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=67.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHH
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSGYQPDS--VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILC 524 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 524 (749)
+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..+|+.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 456677889999999999999998876653 3677788889999999999999998886532111 1222233445778
Q ss_pred HcCCHHHHHHHHHh
Q 004487 525 RSGCFDEAEKLMAQ 538 (749)
Q Consensus 525 ~~g~~~~A~~~~~~ 538 (749)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999999887754
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.072 Score=57.66 Aligned_cols=134 Identities=10% Similarity=0.094 Sum_probs=97.6
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHc--------CCHHHHHHHHH
Q 004487 472 GYQPDSVSLLSVLSACSH--C---GLIEEGLQYFNSMTQKYKLRPKK-EHYASMVDILCRS--------GCFDEAEKLMA 537 (749)
Q Consensus 472 g~~p~~~t~~~ll~a~~~--~---g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~--------g~~~~A~~~~~ 537 (749)
+.+.|...|...+.+... . +..++|..+|++..+ +.|+- ..|..+..++... ++++++.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 456677888888887543 2 337799999999884 57864 3444433333221 12344555555
Q ss_pred hC---C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 538 QM---P-FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 538 ~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
+. + ...+..+|.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 53 1 223567788777777778999999999999999998 57899999999999999999999999886654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.58 E-value=1.5 Score=47.65 Aligned_cols=338 Identities=14% Similarity=0.052 Sum_probs=162.3
Q ss_pred HCCCCCChhhHHH-----HHHHHhCCCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCC---ChHHHHHHHccCCC-
Q 004487 167 HLGFKPSDFTFAA-----ALSAGVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHD---CVVEARKLFGEMPE- 237 (749)
Q Consensus 167 ~~g~~p~~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~~~~- 237 (749)
.-|++.+..-|.. +++-+...+.+..|.++-..+--.-... ..++.....-+.+.. +-+-+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3456655554443 4555556666677776665553211111 456666666666553 23334444444444
Q ss_pred -CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCcchHHHHHHHHHccCChHHHHHHHHHHHHhcCCcchhH
Q 004487 238 -VDGVSYNVMITCYAWNEQYKESLKLFRELQFTRF----DRSQFPFSTLLSVVANKLDLQIGRQIHTQTIVTTAISEVKV 312 (749)
Q Consensus 238 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 312 (749)
.+-++|..+.+.-.+.|+++.|..+++.=...+- -.+..-+...+.-+...|+.+...++.-++...-...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s---- 579 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS---- 579 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH----
Confidence 5667788888887888888888887764222110 1122234445555566666666555554444321000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-CCcccHHHHHHHHHhCCChhHHHHHHHHH------HHCCCCcCHHhHHHHHHH
Q 004487 313 ANSLVDMYAKCGRFEEAKEIFANLSH-ISTVPWTAMISAYVQKGNLEEALNLFIEM------CRANISADQATFASILRA 385 (749)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m------~~~g~~p~~~t~~~ll~~ 385 (749)
+......+...|..++..... .|..+ +..+-+.++-.+++.-|..= ...|..|+.. ..-.+
T Consensus 580 -----~l~~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~ 647 (829)
T KOG2280|consen 580 -----SLFMTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANA 647 (829)
T ss_pred -----HHHHHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHH
Confidence 001111122233333333221 11111 11111222222222222110 0122333322 22333
Q ss_pred hcccCcHHHHHH----------HHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHh
Q 004487 386 SAELASLSLGKQ----------LHSFVI-RSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQ 454 (749)
Q Consensus 386 ~~~~~~~~~a~~----------~~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 454 (749)
|++........+ +...+. +.|....-.+.+--+.-+...|+..+|.++-.+.+-||-..|-.=+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 433333111111 111111 112222222233334445556777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004487 455 NGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEK 534 (749)
Q Consensus 455 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 534 (749)
.+++++-+++-+.+.. .+-|.-...+|.+.|+.++|.+++.+.. |.. -.+.+|.+.|++.+|.+
T Consensus 728 ~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHH
Confidence 7777666555444321 3345556677777777777777775432 111 35667777777777766
Q ss_pred HHH
Q 004487 535 LMA 537 (749)
Q Consensus 535 ~~~ 537 (749)
+--
T Consensus 792 ~A~ 794 (829)
T KOG2280|consen 792 LAA 794 (829)
T ss_pred HHH
Confidence 543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.02 Score=52.33 Aligned_cols=96 Identities=15% Similarity=0.238 Sum_probs=72.0
Q ss_pred HHHhhC--CCCCcchHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------------
Q 004487 432 QTFKEM--PERNIVSWNALISACAQ-----NGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHC-------------- 490 (749)
Q Consensus 432 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------------- 490 (749)
..|+.. ..++..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 444444 35666777777777764 467777778888899999999999999999886542
Q ss_pred --CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 004487 491 --GLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGC 528 (749)
Q Consensus 491 --g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 528 (749)
.+-+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234678888888874 5888888888888888877665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.002 Score=40.12 Aligned_cols=33 Identities=18% Similarity=0.431 Sum_probs=30.7
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 004487 568 ADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQ 601 (749)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 601 (749)
|+++++++| .++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNP-NNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999 999999999999999999999863
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.071 Score=47.14 Aligned_cols=107 Identities=14% Similarity=0.202 Sum_probs=92.4
Q ss_pred hHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-C
Q 004487 503 MTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM---PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKL-R 578 (749)
Q Consensus 503 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~ 578 (749)
..++..+-|+..+--.|..++.+.|+..||...|++. .+.-|....-.+..+....++...|...++++.+..|. .
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 3344467889888889999999999999999999988 45668888888999999999999999999999998772 2
Q ss_pred CchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 579 DAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
++.+...++..|...|+..+|+.-++...+.
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 5677888999999999999999999988765
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.38 Score=40.10 Aligned_cols=141 Identities=13% Similarity=0.160 Sum_probs=86.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 004487 452 CAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDE 531 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 531 (749)
+.-.|..++..++..+...+. +..-++.++.--..+-+-+-..++++.+-+-+.+.|-. ..-.++..|.+.|..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~-- 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKL-- 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcch--
Confidence 344678888888888877642 44455666655455555566666666665443333311 122344444444432
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 004487 532 AEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 532 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
..-....++.....|.-+.-.++++.+.+.+. .++....-++++|.+.|+..++.+++.+.-++|+
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~-~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKKNEE-INPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhccC-CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 23344567777888999999999999987665 7999999999999999999999999999999997
Q ss_pred c
Q 004487 612 R 612 (749)
Q Consensus 612 ~ 612 (749)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.38 Score=48.89 Aligned_cols=158 Identities=15% Similarity=0.153 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-C------cchHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004487 416 ALLDMYAKSGSLKDAIQTFKEMPER-N------IVSWNALISACAQ---NGDAQATLKSFEDMVQSGYQPDSVSLLSVLS 485 (749)
Q Consensus 416 ~li~~y~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 485 (749)
.++-.|-...+++...++.+.+... + ...-....-++.+ .|+.++|++++..+....-.++..|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4445677888888888888887743 1 1122233445556 7899999999999776667778888877777
Q ss_pred HHhc---------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH----HHHHH---Hh-----CC--CC
Q 004487 486 ACSH---------CGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDE----AEKLM---AQ-----MP--FE 542 (749)
Q Consensus 486 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~---~~-----~~--~~ 542 (749)
.|-. ...+++|...+.+. +.+.|+..+--.++-++...|...+ ..++- .. -. -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 23467777776543 4566765544445555555554222 22222 11 11 22
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 543 PDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 543 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
.|--.+.+++.++.-.||.+.|.+.+++++++.|
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 3455567899999999999999999999999877
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=1.3 Score=47.54 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=69.6
Q ss_pred CCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhCCCChHHHHHH
Q 004487 121 IRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPS----DFTFAAALSAGVGLADIALGRQV 196 (749)
Q Consensus 121 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~ 196 (749)
.|.+++|++++-.|.++|.. |..+.+.|++-...++++. -|-..| ...++.+-..++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888777653 5556667777666666542 111111 12344455555555555555555
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004487 197 HAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRE 265 (749)
Q Consensus 197 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 265 (749)
+..--.. ..+++.|.+...+++-+.+-..+++ |......|...+...|.-++|.+.|-+
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 5432111 2344555555555555555555554 333444555666666666666665543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.26 Score=46.30 Aligned_cols=135 Identities=14% Similarity=0.136 Sum_probs=90.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhC-----CCCchhHHHHHHH
Q 004487 345 TAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSG-----FMSNVFSGSALLD 419 (749)
Q Consensus 345 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~ 419 (749)
+.++..+...|.+.-.+.++++.++...+.++...+.+.+.-.+.|+.+.+...++...+.. +.....+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 45666666677777788888888876656677777778888888888888888888776643 2333333334444
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004487 420 MYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLL 481 (749)
Q Consensus 420 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 481 (749)
.|.-++++..|...|++++. .|++.-|.-.-...-.|+..+|++..+.|.. ..|...+-.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 56667778888888877764 3444555444444556788888888888887 455554444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.045 Score=54.85 Aligned_cols=84 Identities=8% Similarity=0.143 Sum_probs=73.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCC
Q 004487 545 EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKS 624 (749)
Q Consensus 545 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~ 624 (749)
..++..|...|.+.+++..|+...++.++++| +|.-..+.-+.+|...|.++.|...++++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------------- 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKL--------------- 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh---------------
Confidence 34667777888999999999999999999999 99999999999999999999999999999764
Q ss_pred EEEEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 004487 625 KVHVFTANDELHPQTNEIRRKIENLMQEMKK 655 (749)
Q Consensus 625 ~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 655 (749)
.|.+++|...+..+.+++++
T Consensus 321 -----------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 -----------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred -----------CCCcHHHHHHHHHHHHHHHH
Confidence 56778888888888777764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.04 Score=46.24 Aligned_cols=84 Identities=12% Similarity=-0.064 Sum_probs=50.7
Q ss_pred HHHHHcCCHHHHHHHHHhC---CCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchhHHHHHHHHHH
Q 004487 521 DILCRSGCFDEAEKLMAQM---PFEPD--EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLR---DAAPYVAMSNIYAV 592 (749)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 592 (749)
.++-..|+.++|+.++++. +.... ...+-.+.+.++..|++++|+.++++.....| . +......++-++..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p-~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP-DDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHH
Confidence 3445556666666666554 22111 23444556667777777777777777776655 4 44455556667777
Q ss_pred cCCchhHHHHHHH
Q 004487 593 AGQWESVSQVKKA 605 (749)
Q Consensus 593 ~g~~~~a~~~~~~ 605 (749)
.|++++|.+.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 7777777776544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.30 E-value=2.4 Score=46.85 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=78.3
Q ss_pred HHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHH----HHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCC
Q 004487 11 MLISGYVKSGNLATARELFNSMVDRTAVSWTILIG----GYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEP 86 (749)
Q Consensus 11 ~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~----~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~ 86 (749)
.-|+++.+...++-|..+-..-..+ ...-..+.+ -+.+.|++++|..-|-+-... +.| ..+++-+...
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHHHHHhcCH
Confidence 3466777777777787777654432 222233333 345789999998877665432 333 2345555666
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCC
Q 004487 87 DTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMP 135 (749)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 135 (749)
.........++.+.+.|+. +...-+.|+..|.+.++.+.-.++.+...
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 6777777788888888875 44555788999999999998888887766
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.031 Score=54.55 Aligned_cols=56 Identities=11% Similarity=-0.050 Sum_probs=25.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLR---DAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
+...+...|++++|...|+++++..| . .+..+..++.+|...|++++|.++++...
T Consensus 186 LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 186 LGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444555555555555544444 2 12333334444445555555555554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.021 Score=58.62 Aligned_cols=63 Identities=6% Similarity=-0.080 Sum_probs=30.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch---hHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 545 EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA---PYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 545 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
...|+.+..+|...|++++|+..|+++++++| .+.. +|..++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNP-NPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555555555555544 3332 244455555555555555554444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.14 Score=48.03 Aligned_cols=170 Identities=9% Similarity=0.005 Sum_probs=105.7
Q ss_pred hHHHHHHHHcCCChHHHHHHHhcCCCC--C--------cchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHH
Q 004487 9 TNMLISGYVKSGNLATARELFNSMVDR--T--------AVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFAT 78 (749)
Q Consensus 9 ~~~ll~~~~~~g~~~~A~~~f~~~~~~--~--------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ 78 (749)
+++|++.+.-..-+++-...|+.-..| . ...-+.++..+.-.|.+.-...++.+..+. ..+.++.....
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~ 217 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSG 217 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHH
Confidence 566666665555555555555544332 1 123356777777778888888888887775 44556666666
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHhHcCCChhHHHHHHccCCCC---CcchHHHHHHHHH
Q 004487 79 LLSGCSEPDTANELIQVHADIIKFGYNSI-----LIICNSLVDSYCKIRCLDLARRVFKEMPQK---DSVSFNALITGFA 150 (749)
Q Consensus 79 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~ 150 (749)
|.+.-.+.||.+.+...++.+.+..-..| ..+.......|.-..++..|.+.|+++++. |.+.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 66777778888888888887776533333 333333344455567778888888777763 4444444444444
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 004487 151 KEGLNEEAIKLFVEMQHLGFKPSDFTFAAAL 181 (749)
Q Consensus 151 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 181 (749)
-.|+...|++..+.|.+. .|...+-++++
T Consensus 298 Ylg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 567888888888888764 45555444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.04 E-value=2.1 Score=43.83 Aligned_cols=188 Identities=12% Similarity=0.112 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcc-------hHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004487 413 SGSALLDMYAKSGSLKDAIQTFKEMP--ERNIV-------SWNALISACA----QNGDAQATLKSFEDMVQSGYQPDSVS 479 (749)
Q Consensus 413 ~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~-------~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t 479 (749)
.+..++....+.++...|.+.+.-+. +|+.. +-..+-+..+ .+-+..+=+.+|++.....+.-..-.
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLv 379 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLV 379 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 34455555566666666666555443 23221 0011111111 12233444566666666433221111
Q ss_pred HHHHHH--HHhccCC-HHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHc--------C---CHHHHHHHHHhCCCCC-
Q 004487 480 LLSVLS--ACSHCGL-IEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRS--------G---CFDEAEKLMAQMPFEP- 543 (749)
Q Consensus 480 ~~~ll~--a~~~~g~-~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~--------g---~~~~A~~~~~~~~~~p- 543 (749)
...+-. -+-+.|. -++|+++++.+.+ +.| |.+.-| .+-.+.+. . ++-+-+.++++.++.|
T Consensus 380 h~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n-~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 380 HYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECEN-IVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 111111 2444554 7778888877763 333 222222 22211111 1 1123344566666655
Q ss_pred ---CHHhHHHHHHH--HHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHH
Q 004487 544 ---DEIMWSSVINS--CRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAM 606 (749)
Q Consensus 544 ---~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 606 (749)
+...-|.|..| ...+|++.++.-...=+.+..| ++.+|..++-+.....++++|..++..+
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP--S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP--SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 35566777777 4789999999988888888988 9999999999999999999999999865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.35 Score=46.85 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=99.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CCcc-hH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 004487 416 ALLDMYAKSGSLKDAIQTFKEMPE--RNIV-SW---NALISACAQNGDAQATLKSFEDMVQSGYQPDS--VSLLSVLSAC 487 (749)
Q Consensus 416 ~li~~y~~~g~~~~A~~~~~~~~~--~~~~-~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~ 487 (749)
.....+.+.|++++|.+.|+.+.. |+.. .- -.+..+|.+.+++++|...|++..+. .|+. ..+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHH
Confidence 344555667888888888887763 2221 11 23456667788888888888888773 3432 2333333333
Q ss_pred hc--cC---------------C---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHh
Q 004487 488 SH--CG---------------L---IEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIM 547 (749)
Q Consensus 488 ~~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~ 547 (749)
+. .+ + ..+|.+.|+.+.++| |+. .-..+|.+.+..+...--..-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~la~~e 178 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRLAKYE 178 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHHHHHH
Confidence 21 10 1 223444555554432 332 222333333322210000000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 548 WSSVINSCRIHKNLEFAKKAADQLFKMEKLR---DAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 548 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
-....-|.+.|.+.-|..-++.+++.-| . ...+...+..+|...|..++|.++...+.
T Consensus 179 -~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 -LSVAEYYTKRGAYVAVVNRVEQMLRDYP-DTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHcCchHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0233447788999999999999998777 4 34567788899999999999999887664
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.9 Score=43.05 Aligned_cols=95 Identities=8% Similarity=0.095 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCCC--hHH
Q 004487 445 WNALISACAQNGDAQATLKSFEDMVQSGYQ-----PDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKY-KLRPK--KEH 515 (749)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~--~~~ 515 (749)
+..+...+.+.|++++|+++|++....-.. ++.. .|...+-++...|++..|.+.|+...... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 344667788888999999999888764322 1222 23333445667888999999888876321 22223 234
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHhC
Q 004487 516 YASMVDILCR--SGCFDEAEKLMAQM 539 (749)
Q Consensus 516 ~~~li~~~~~--~g~~~~A~~~~~~~ 539 (749)
...|++++-. ...+++|..-|+++
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 4555666543 23455666666666
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.014 Score=39.06 Aligned_cols=42 Identities=12% Similarity=0.276 Sum_probs=36.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 004487 546 IMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSN 588 (749)
Q Consensus 546 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 588 (749)
.+|..+..++...|+.++|++.++++++..| .|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHhhh
Confidence 3677888899999999999999999999999 88888877764
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.087 Score=44.71 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=25.1
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHhHHHHHHHH
Q 004487 509 LRPKKEHYASMVDILCRSGCFDEAEKLMAQM----PFEPDEIMWSSVINSC 555 (749)
Q Consensus 509 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~ 555 (749)
+.|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.-+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455555555555555555555555555444 3333455555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.026 Score=42.77 Aligned_cols=62 Identities=15% Similarity=0.252 Sum_probs=46.8
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhH
Q 004487 521 DILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPY 583 (749)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 583 (749)
.+|.+.+++++|.+.++++ ...| +...|......+...|++++|...++++++..| .+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p-~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP-DDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC-CcHHHH
Confidence 4677788888888888877 4445 466677777778888888888888888888888 555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.092 Score=51.26 Aligned_cols=26 Identities=19% Similarity=-0.038 Sum_probs=16.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
+...+...|+.+.|...++++++..|
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 34445556666666666666666666
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.1 Score=44.23 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 004487 411 VFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHC 490 (749)
Q Consensus 411 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 490 (749)
..++.+++-++++.|+++....+++..=..|+. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 456677777788888887777777654322111 0011111 112234789999999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH
Q 004487 491 GLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCR 525 (749)
Q Consensus 491 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 525 (749)
|++..|+++.+...+.|+++-+...|..|+.-...
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988888899888764433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.14 Score=45.36 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 547 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
+...++..+...|+.+.|...+++++..+| .+...|..++.+|...|+..+|.++++.++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455677778889999999999999999999 9999999999999999999999999988743
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.69 E-value=3 Score=42.82 Aligned_cols=199 Identities=18% Similarity=0.148 Sum_probs=104.0
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHH----------hHHHHHHHhcccCcHHHH---HHHHHHHHHhCCC
Q 004487 342 VPWTAMISAYVQKGNLEEALNLFIEMCRANISADQA----------TFASILRASAELASLSLG---KQLHSFVIRSGFM 408 (749)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------t~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~ 408 (749)
.++..++....+.++..+|-+.+.-+.- +.|+.. ++..++ |....++..- ..++..+...++.
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv--~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIV--CEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHH--hcchHHHHHHHHHHHHHHHHHhhccc
Confidence 3477777888888888888877766544 233322 111111 1111111111 2233333333222
Q ss_pred CchhHHHHHH---HHHHhcCC-HHHHHHHHhhCCC---CCcchHHHHH----HHHHhc---CCHHHHHHHHHHHHHCCCC
Q 004487 409 SNVFSGSALL---DMYAKSGS-LKDAIQTFKEMPE---RNIVSWNALI----SACAQN---GDAQATLKSFEDMVQSGYQ 474 (749)
Q Consensus 409 ~~~~~~~~li---~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~ 474 (749)
.- ....-|+ .-+-+.|. -++|.++++.+.+ -|..+-|... .+|.+. .....-+.+-+-..+.|+.
T Consensus 375 rq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 375 RQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 11 1111111 22233344 6777777776652 3444444322 223221 2233334444445566776
Q ss_pred CCHH----HHHHHHHH--HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHhH
Q 004487 475 PDSV----SLLSVLSA--CSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPFEPDEIMW 548 (749)
Q Consensus 475 p~~~----t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 548 (749)
|-.+ .-+.|..| ....|++.++.-+-..+. .+.|++.+|.-+.-.+....+++||.+++...| |+..+|
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ 528 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMR 528 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhH
Confidence 6433 23333333 445678888776665554 478888888888777788888888888888875 466666
Q ss_pred HH
Q 004487 549 SS 550 (749)
Q Consensus 549 ~~ 550 (749)
++
T Consensus 529 ds 530 (549)
T PF07079_consen 529 DS 530 (549)
T ss_pred HH
Confidence 54
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.13 Score=42.49 Aligned_cols=88 Identities=17% Similarity=0.253 Sum_probs=68.6
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC----chhHHHHHHHHHHcCC
Q 004487 522 ILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRD----AAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 595 (749)
++...|+++.|++.|.+. .+-| .+..||.-..+++-.|+.++|..-+++++++.. +. ...|+.-+.+|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHhCc
Confidence 566778888888888776 3333 577888888888999999999999999888754 32 3457788888999999
Q ss_pred chhHHHHHHHHHhCC
Q 004487 596 WESVSQVKKAMRERG 610 (749)
Q Consensus 596 ~~~a~~~~~~m~~~g 610 (749)
-++|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999988888876665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.023 Score=43.83 Aligned_cols=62 Identities=10% Similarity=0.085 Sum_probs=41.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCC--CCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 546 IMWSSVINSCRIHKNLEFAKKAADQLFKM----EKL--RDAAPYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 546 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
.+++.+...+...|++++|+..+++++++ ++. .-..++..++.+|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666677777777777777776643 210 124567788888888888888888887754
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.021 Score=44.10 Aligned_cols=29 Identities=7% Similarity=-0.101 Sum_probs=18.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004487 545 EIMWSSVINSCRIHKNLEFAKKAADQLFK 573 (749)
Q Consensus 545 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 573 (749)
..++..+...+...|++++|+..+++.++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555666666677777777777766654
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.07 E-value=2.6 Score=42.46 Aligned_cols=154 Identities=10% Similarity=-0.024 Sum_probs=92.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHh---cC-CCCChH
Q 004487 444 SWNALISACAQNGDAQATLKSFEDM----VQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQK---YK-LRPKKE 514 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~-~~p~~~ 514 (749)
.|..|-+.|.-.|+++.|+..-+.= ++-|-+. ....+..+.+++.-.|+++.|.++++....- .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555556666677888887665432 2223222 2236677777888888888888887654321 01 111233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCC-----CCCCch
Q 004487 515 HYASMVDILCRSGCFDEAEKLMAQM-------P-FEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKME-----KLRDAA 581 (749)
Q Consensus 515 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~ 581 (749)
..-+|...|.-..++++|+.++.+- + ..-....+-+|..++...|+.++|..+.+..++.. +.....
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 4445677777777788888776553 1 11134566678888888899999888887766532 211233
Q ss_pred hHHHHHHHHHHcCCch
Q 004487 582 PYVAMSNIYAVAGQWE 597 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~ 597 (749)
.-..|++.-...|.-+
T Consensus 357 ar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 357 ARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhHHHHHHhCCCc
Confidence 4455666666666544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=3.3 Score=39.42 Aligned_cols=194 Identities=16% Similarity=0.141 Sum_probs=127.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004487 411 VFSGSALLDMYAKSGSLKDAIQTFKEMP-----ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLS 485 (749)
Q Consensus 411 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 485 (749)
..........+...+.+..+...+.... ......+..+...+...+++..+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4555666667777777777777766543 23344555566666677777888888887776433331 12222222
Q ss_pred -HHhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHhHHHHHHHHHh
Q 004487 486 -ACSHCGLIEEGLQYFNSMTQKYKLRP----KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD--EIMWSSVINSCRI 557 (749)
Q Consensus 486 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~ 557 (749)
++...|+++.+...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67788888888888887743 233 2333444444466778888888888777 33333 5667777777888
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 558 HKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 558 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.++.+.|...+.......| .....+..+...+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDP-DNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCc-ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888887 55566667777777777788888777776554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.5 Score=48.94 Aligned_cols=197 Identities=12% Similarity=0.103 Sum_probs=108.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 004487 452 CAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDE 531 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 531 (749)
.-+..+.+.-+++-++..+ +.||-.+-..++ +-..+..+.++.+++++..+. + ...+..- ......|..
T Consensus 178 AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~~-- 246 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGHF-- 246 (539)
T ss_pred HHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccch--
Confidence 3445666777777777777 677765444433 333455678888888776542 1 0000000 000011111
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 532 AEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKL-RDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 532 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
.+.+.+-...|-..+=..|...+++.|..++|++.++++++..|. ++-.....|+..+...+++.++..++.+-.+..
T Consensus 247 -~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 247 -WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred -hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 111111111222333345666778889999999999999887663 245678889999999999999999998876544
Q ss_pred CccCCceeEEEeCCEEEEEEeCCCCCcCh-------HHHHHHHHHHHHHHHHcCCcCCC
Q 004487 611 VRKVTAYSWVELKSKVHVFTANDELHPQT-------NEIRRKIENLMQEMKKEGYKPDT 662 (749)
Q Consensus 611 ~~~~~~~s~~~~~~~~~~f~~~~~~~~~~-------~~~~~~l~~l~~~m~~~g~~pd~ 662 (749)
.++....+|..- -+.....+|+..|.. ......++.+.+-++-..++|+-
T Consensus 326 lpkSAti~YTaA--LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 326 LPKSATICYTAA--LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred CCchHHHHHHHH--HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 444333333210 000111233333321 12223455677777777777763
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.9 Score=44.86 Aligned_cols=157 Identities=12% Similarity=0.100 Sum_probs=99.3
Q ss_pred chH--HHHHHHHHhc-----CCHHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhc---------cCCHHHHHHHHHHhH
Q 004487 443 VSW--NALISACAQN-----GDAQATLKSFEDMVQ-SGYQPDSV-SLLSVLSACSH---------CGLIEEGLQYFNSMT 504 (749)
Q Consensus 443 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 504 (749)
..| ..++.|.... -..+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555554441 135678888998882 22667654 44333332211 234456666665555
Q ss_pred HhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 505 QKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 505 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
+ +.| |......+..++.-.|+++.|..+|++. ...|| +.+|-.....+...|+.++|.+.+++.++++| ....
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP-~~~~ 407 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP-RRRK 407 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc-hhhH
Confidence 3 344 5556666677777788899999999988 66776 66676666677788999999999999999999 4433
Q ss_pred hHH--HHHHHHHHcCCchhHHHHHH
Q 004487 582 PYV--AMSNIYAVAGQWESVSQVKK 604 (749)
Q Consensus 582 ~~~--~l~~~~~~~g~~~~a~~~~~ 604 (749)
.-. ..++.|+..+ .++|.+++-
T Consensus 408 ~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 408 AVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 322 3333565554 466666654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.95 E-value=6.3 Score=42.15 Aligned_cols=182 Identities=10% Similarity=0.107 Sum_probs=122.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004487 410 NVFSGSALLDMYAKSGSLKDAIQTFKEMPERN---IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSA 486 (749)
Q Consensus 410 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 486 (749)
+..+|..-++.-.+.|+.+.+.-.|+...-|- ...|--.+.-....|+.+-|..++....+--++-...+...-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45677777787888899988888888876432 234555555445558888887777665553232222232222233
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHHhHHHHHH-----HHH
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRPKK-EHYASMVDILCRSGCFDEAE---KLMAQM-PFEPDEIMWSSVIN-----SCR 556 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~-----~~~ 556 (749)
+-..|+.+.|..+++.+..++ |+. ..-.--+....|.|..+.+. +++... +.+-+..+...+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 667889999999999998763 553 33334466778889988888 555444 33333333333332 245
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 004487 557 IHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 557 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (749)
..++.+.|..++.++.+..| ++...|..+++.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~-~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILP-DCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCC-ccHHHHHHHHHHHHhCCc
Confidence 67899999999999999999 999999999998877663
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.21 Score=51.49 Aligned_cols=62 Identities=10% Similarity=0.057 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 004487 513 KEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDE----IMWSSVINSCRIHKNLEFAKKAADQLFKM 574 (749)
Q Consensus 513 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 574 (749)
...++.+..+|...|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555566666666665553 444542 23566666666666666666666666664
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.26 Score=46.69 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=80.3
Q ss_pred HHHHHhhCC--CCCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 004487 430 AIQTFKEMP--ERNIVSWNALISACAQN-----GDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCG----------- 491 (749)
Q Consensus 430 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 491 (749)
.++.|.... ++|-.+|-+++..+..+ ++.+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666666 67888898888888754 566777777889999999999999999999875532
Q ss_pred -----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 004487 492 -----LIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFD 530 (749)
Q Consensus 492 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 530 (749)
+-+-++.++++|. .+|+.||.++-..|+.+++|.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 2355788999997 5699999999999999999988643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.21 Score=52.84 Aligned_cols=132 Identities=18% Similarity=0.272 Sum_probs=82.9
Q ss_pred HHhcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 004487 452 CAQNGDAQATLKSFED-MVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFD 530 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 530 (749)
..-.|+++++.++... -.-..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 4456777777666641 1111122 33456677777778888888876643322 246667888888
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 004487 531 EAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 531 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
.|.++.++.. +...|..|......+||++.|+..+++..+ +..|+-+|...|+.+.-.++.+....+|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8888877653 677898888888888999888888887443 4457778888888877777777766665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.49 E-value=2.6 Score=39.57 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=76.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSGYQ-PD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCR 525 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 525 (749)
....+.+.|++.+|++.|+++...-.. |- ......+..++...|++++|...++...+.+.-.|... +.....+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~ 89 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSY 89 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHH
Confidence 445567788888888888888874211 11 23555667778888888888888888887765555432 2211211111
Q ss_pred cCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchh-----------------HHHHHH
Q 004487 526 SGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAP-----------------YVAMSN 588 (749)
Q Consensus 526 ~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----------------~~~l~~ 588 (749)
...... .+ .. .+..+....|...|+.+++.-| .+... -..++.
T Consensus 90 ~~~~~~---~~---~~-------------~~D~~~~~~A~~~~~~li~~yP-~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 90 YKQIPG---IL---RS-------------DRDQTSTRKAIEEFEELIKRYP-NSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHH---HH----T-------------T---HHHHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcc---ch---hc-------------ccChHHHHHHHHHHHHHHHHCc-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000 00 00 1122234455555555555555 33222 225788
Q ss_pred HHHHcCCchhHHHHHHHHHhC
Q 004487 589 IYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 589 ~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.|.+.|.+..|..-++.+.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 899999999999999988765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.43 Score=42.10 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH----HhcCCCCChHH
Q 004487 445 WNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMT----QKYKLRPKKEH 515 (749)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 515 (749)
...++..+...|++++|+.+.+.+.... +-|...+..++.++...|+..+|.++|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445566667777777777777777732 3355577777777888888777777776653 24577777654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.30 E-value=6.8 Score=45.36 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC
Q 004487 517 ASMVDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 517 ~~li~~~~~~g~~~~A~~~~~~~ 539 (749)
..|+..+...++.-+|-++..+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHH
Confidence 34555555555555555555554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.3 Score=41.68 Aligned_cols=176 Identities=17% Similarity=0.229 Sum_probs=82.8
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCcc------cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHH--hHHHHHHHhcccC
Q 004487 319 MYAKCGRFEEAKEIFANLSHISTV------PWTAMISAYVQKGNLEEALNLFIEMCRANISADQA--TFASILRASAELA 390 (749)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~ 390 (749)
.+...|++++|.+.|+.+...-+. ..-.++.++-+.|++++|...|++..+. -|+.. -+...+.+.+...
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 345677788888777777532111 1445667777888888888888887664 23221 1221121111100
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004487 391 SLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQ 470 (749)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (749)
.... .+ .. ....+...+|...| ..++.-|=......+|.....++.+
T Consensus 92 ~~~~---~~------~~-------------~~D~~~~~~A~~~~-----------~~li~~yP~S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 92 QIPG---IL------RS-------------DRDQTSTRKAIEEF-----------EELIKRYPNSEYAEEAKKRLAELRN 138 (203)
T ss_dssp HHHH---HH-------T-------------T---HHHHHHHHHH-----------HHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred hCcc---ch------hc-------------ccChHHHHHHHHHH-----------HHHHHHCcCchHHHHHHHHHHHHHH
Confidence 0000 00 00 01111222333333 3344444445555555554444433
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHH
Q 004487 471 SGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-KEHYASMVDILCRSGCFDEAE 533 (749)
Q Consensus 471 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 533 (749)
. .-. --..+..-|.+.|.+..|..-++.+.+.|.-.|. .+....|+.+|.+.|..+.|.
T Consensus 139 ~---la~-~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 139 R---LAE-HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp H---HHH-HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred H---HHH-HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 1 000 1112445577777888888777777776533332 234456777777777776443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.93 Score=44.00 Aligned_cols=26 Identities=12% Similarity=-0.021 Sum_probs=13.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
|..++...|++.+|...++.|++..|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 33345555555555555555555554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.63 E-value=7.1 Score=39.99 Aligned_cols=162 Identities=17% Similarity=0.126 Sum_probs=102.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHH-HHHHHHHHHhc---cCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 004487 447 ALISACAQNGDAQATLKSFEDMVQSGY--QPDSV-SLLSVLSACSH---CGLIEEGLQYFNSMTQKYKLRPKKEHYASMV 520 (749)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~-t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 520 (749)
.|+-+|....+++..+++++.|...-- .++.. .--...-|+.+ .|+.++|++++..+... .-.+++++|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 455569999999999999999987410 11111 11123335566 89999999999985544 5567788887776
Q ss_pred HHH----HHc-----CCHHHHHHHHHhC-CCCCCHHh---HHHHHHHHHhcC-CHHHHHHHH----HHHhcC---CCCCC
Q 004487 521 DIL----CRS-----GCFDEAEKLMAQM-PFEPDEIM---WSSVINSCRIHK-NLEFAKKAA----DQLFKM---EKLRD 579 (749)
Q Consensus 521 ~~~----~~~-----g~~~~A~~~~~~~-~~~p~~~~---~~~ll~~~~~~g-~~~~a~~~~----~~~~~~---~~~~~ 579 (749)
..| ... ..+++|.+.+.+. ..+||... +-+|+......- .-.+..++. ..+.+. ++..+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 554 332 2477888888887 66666432 233333322211 112222322 222222 23345
Q ss_pred chhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 580 AAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 580 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
--.+.++..++.-.|+.++|.+..+.|...
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 666778899999999999999999999865
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.62 E-value=9.9 Score=39.13 Aligned_cols=399 Identities=10% Similarity=0.084 Sum_probs=209.5
Q ss_pred CCChhHHHHHHHHHHcCCChHHHHHHHccCCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHH
Q 004487 206 VENVFVANALLDLYSKHDCVVEARKLFGEMPEVDGV---SYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLL 282 (749)
Q Consensus 206 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 282 (749)
+.|...|-.|+.-|...|.+++.++++++|..|-+. +|...+++=....++.....+|.+.+......| .|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ld--LW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD--LWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHh--HHHHHH
Confidence 557788888999998889999999999988876543 688888887788888888888888876655433 333334
Q ss_pred HHHHccCChH------HHHHHHHHHHH-hcCCc-chhHHHHHHHHHH---------hcCCHHHHHHHHHhcCCCCccc--
Q 004487 283 SVVANKLDLQ------IGRQIHTQTIV-TTAIS-EVKVANSLVDMYA---------KCGRFEEAKEIFANLSHISTVP-- 343 (749)
Q Consensus 283 ~~~~~~~~~~------~a~~~~~~~~~-~g~~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~-- 343 (749)
.-..+....- ...+.++..+. .++.| ....|+..++..- ...++|..++.+.++.......
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 3333332211 11233333333 23333 2334444444322 1234555666666665321111
Q ss_pred --HHH------HHHHH-Hh--CC----ChhHHHHHHHHHHH--CCCCc----CHHhHHHHHHH-hcc-------------
Q 004487 344 --WTA------MISAY-VQ--KG----NLEEALNLFIEMCR--ANISA----DQATFASILRA-SAE------------- 388 (749)
Q Consensus 344 --~~~------li~~~-~~--~g----~~~~A~~l~~~m~~--~g~~p----~~~t~~~ll~~-~~~------------- 388 (749)
|+- =+... ++ .| -+..|...+++... .|++. +..|++-+-+. .++
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 211 11111 10 11 23456666666543 34322 22333322110 000
Q ss_pred --cCc--HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcc------------------h
Q 004487 389 --LAS--LSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RNIV------------------S 444 (749)
Q Consensus 389 --~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~------------------~ 444 (749)
.++ .....-+|.+.... +.....+|----..+...++-+.|.+....-.+ |... +
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~ 355 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGC 355 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhh
Confidence 000 01111122222221 111222222222333455666777766654332 2210 1
Q ss_pred HHHHHHHHHh---cCCHHHHHHH------HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CCCChH
Q 004487 445 WNALISACAQ---NGDAQATLKS------FEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYK-LRPKKE 514 (749)
Q Consensus 445 ~~~li~~~~~---~g~~~~A~~~------~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~~~ 514 (749)
|..++..+.+ .++.+.+... ..+..-....-=...|...+++-.+..-++.|..+|-++.+. + +.+++.
T Consensus 356 fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vy 434 (660)
T COG5107 356 FDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVY 434 (660)
T ss_pred HHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCccee
Confidence 1112221111 1111111111 011110000111234556667777777889999999988865 5 677888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCCchhHHHHHHHHH
Q 004487 515 HYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMW-SSVINSCRIHKNLEFAKKAADQLFKMEK-LRDAAPYVAMSNIYA 591 (749)
Q Consensus 515 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 591 (749)
.+++++.-++ .|+..-|.++|+-- ..-||...| .-.+.-+...++-+.|..+|+..++.-. ..-...|..++.--.
T Consensus 435 i~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs 513 (660)
T COG5107 435 IYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYES 513 (660)
T ss_pred eeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH
Confidence 9999998665 68888899998764 334665554 3345556677888889999986654322 012567888887777
Q ss_pred HcCCchhHHHHHHHHHhC
Q 004487 592 VAGQWESVSQVKKAMRER 609 (749)
Q Consensus 592 ~~g~~~~a~~~~~~m~~~ 609 (749)
.-|+...|..+-+.|.+.
T Consensus 514 ~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 514 MVGSLNNVYSLEERFREL 531 (660)
T ss_pred hhcchHHHHhHHHHHHHH
Confidence 888888887777777553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.50 E-value=10 Score=38.99 Aligned_cols=90 Identities=11% Similarity=0.089 Sum_probs=68.1
Q ss_pred HHHHHHhcCCC-C-CcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCCChHHHHHHHHHHHH
Q 004487 24 TARELFNSMVD-R-TAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPDTANELIQVHADIIK 101 (749)
Q Consensus 24 ~A~~~f~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 101 (749)
+-+++=+++++ | |+.+|-.||.-|..+|..++..+++++|... .+--...|..-+++-....++.....+|.+-++
T Consensus 27 D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 27 DELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred hHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 44466666655 3 7889999999999999999999999999763 455556677777776677888889999998887
Q ss_pred hCCCCchhHHHHHHHH
Q 004487 102 FGYNSILIICNSLVDS 117 (749)
Q Consensus 102 ~g~~~~~~~~~~li~~ 117 (749)
..+. +..|...++-
T Consensus 105 k~l~--ldLW~lYl~Y 118 (660)
T COG5107 105 KSLN--LDLWMLYLEY 118 (660)
T ss_pred hhcc--HhHHHHHHHH
Confidence 7654 5556655553
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.39 E-value=8.3 Score=37.56 Aligned_cols=155 Identities=11% Similarity=0.157 Sum_probs=102.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 004487 450 SACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCF 529 (749)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 529 (749)
......|++.+|..+|....... +-+...-..+..+|...|+++.|..++..+-.+. -.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 34567888999999998888742 2233456677788899999999999998765331 111111123456677777777
Q ss_pred HHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCCchhHHHHHHHHHHcCCchh-HHHHHHHH
Q 004487 530 DEAEKLMAQMPFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK-LRDAAPYVAMSNIYAVAGQWES-VSQVKKAM 606 (749)
Q Consensus 530 ~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m 606 (749)
.+..++-.+..-.| |...--.|...+...|+.+.|...+=.+++.+. ..|...-..|+.++...|.-+. +.+.+++|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 77777777765556 455556677778888999988887777766532 1466777778888877774443 34444444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.29 E-value=2.2 Score=45.20 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=60.5
Q ss_pred HHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHH
Q 004487 216 LDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGR 295 (749)
Q Consensus 216 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 295 (749)
.+...++|+++.|.++-+... +...|..|.....+.|+++-|.+.|.+... +..++-.+...|+.+.-.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 345567888888888877765 556888888888888888888888887642 455555555556655555
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 004487 296 QIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIF 333 (749)
Q Consensus 296 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 333 (749)
++-......|- +|....++...|+.++..+++
T Consensus 394 kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 394 KLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 55544444331 223333334445555444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.14 E-value=4.3 Score=43.73 Aligned_cols=158 Identities=14% Similarity=0.132 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 004487 447 ALISACAQNGDAQATLKSFEDMVQSG-YQPDS-----VSLLSVLSACS----HCGLIEEGLQYFNSMTQKYKLRPKKEHY 516 (749)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 516 (749)
.+++...-.||-+.+++++.+..+.+ +.-.. -+|..++..+. .....+.+.++++.+.+. -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 34455555677777777766654432 11111 12333333222 245788899999998865 4766555
Q ss_pred HHH-HHHHHHcCCHHHHHHHHHhCC-CCC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHH-HHHH
Q 004487 517 ASM-VDILCRSGCFDEAEKLMAQMP-FEP-----DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYV-AMSN 588 (749)
Q Consensus 517 ~~l-i~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~ 588 (749)
.-. ...+...|++++|.+.|++.- .+. ....+--+...+....++++|...+.++.+... .+...|. ..+-
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 433 456778899999999998752 111 122333345556778899999999999999887 5555544 5555
Q ss_pred HHHHcCCc-------hhHHHHHHHHHh
Q 004487 589 IYAVAGQW-------ESVSQVKKAMRE 608 (749)
Q Consensus 589 ~~~~~g~~-------~~a~~~~~~m~~ 608 (749)
+|...|+. ++|.+++.+...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 67888988 777777777644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.7 Score=45.16 Aligned_cols=117 Identities=11% Similarity=0.038 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHH---------HcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcC
Q 004487 492 LIEEGLQYFNSMTQKYKLRPKK-EHYASMVDILC---------RSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHK 559 (749)
Q Consensus 492 ~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~---------~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 559 (749)
..+.|+.+|.+......+.|+- ..|..+...+. ......+|.++.++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4577888898887555677763 34444333222 122345677777666 4445 5777777777777788
Q ss_pred CHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 560 NLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 560 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
+.+.|...|+++..+.| +...+|...+....-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 89999999999999999 99999999999999999999999999885443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.03 E-value=5.6 Score=34.61 Aligned_cols=42 Identities=2% Similarity=0.082 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004487 447 ALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSH 489 (749)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 489 (749)
.++..+.+.+.......+++.+...+ ..+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444555555555544443 2333344444444443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.1 Score=37.59 Aligned_cols=67 Identities=7% Similarity=-0.069 Sum_probs=48.4
Q ss_pred CCHHhHHHHHHHHHh---cCCHHHHHHHHHHHhc-CCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 543 PDEIMWSSVINSCRI---HKNLEFAKKAADQLFK-MEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 543 p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
++..+--.+..+... ..++.+++.+++.+.+ -.|.........|+-.+++.|+++++.++.+...+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333344444555443 3467889999999997 555445666777888999999999999999988664
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.71 E-value=2.2 Score=36.70 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=40.4
Q ss_pred HHcCCHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 004487 524 CRSGCFDEAEKLMAQM----PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNI 589 (749)
Q Consensus 524 ~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 589 (749)
.+.|++++|.+.|+.+ |..| ....--.|+.++.+.+++++|...+++.+++.|......|.....+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 3566666776666665 3222 2334445667777777777777777777777774444445444444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.66 E-value=6.4 Score=34.27 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=35.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHH
Q 004487 282 LSVVANKLDLQIGRQIHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEAL 361 (749)
Q Consensus 282 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 361 (749)
+..+...+.......+++.+++.+ ..+....+.++..|++.+ .++..+.++. ..+.......+..|.+.+.++++.
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~ 89 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAV 89 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHH
Confidence 333333333444444444444443 244556666777776653 2333333331 122222333444444444444444
Q ss_pred HHHHH
Q 004487 362 NLFIE 366 (749)
Q Consensus 362 ~l~~~ 366 (749)
-++.+
T Consensus 90 ~l~~k 94 (140)
T smart00299 90 ELYKK 94 (140)
T ss_pred HHHHh
Confidence 44433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.58 E-value=20 Score=39.79 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChh
Q 004487 212 ANALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYK 257 (749)
Q Consensus 212 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 257 (749)
+..+|+.+.-.|++++|-...-.|-..+..-|.-.+..+...++..
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 3445555555666666666666665555555555555555555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.38 E-value=3.7 Score=40.37 Aligned_cols=112 Identities=13% Similarity=0.197 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHhccCCHHHH
Q 004487 424 SGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVL----SACSHCGLIEEG 496 (749)
Q Consensus 424 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll----~a~~~~g~~~~a 496 (749)
.|+..+|...++++. ..|..+|+--=.+|...|+...-...+++.... ..||...|..+= -++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 455555555555544 235555655556666666666666666665543 234443222221 123445666666
Q ss_pred HHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 004487 497 LQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 497 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (749)
.+.-++.. .+.| |.-...+....+.-.|++.++.+++.+-
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 66554443 2333 2222334555556666666666666554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.37 E-value=9.9 Score=35.82 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHhcCC----CCCCchh
Q 004487 515 HYASMVDILCRSGCFDEAEKLMAQMP-------FEPDE-IMWSSVINSCRIHKNLEFAKKAADQLFKME----KLRDAAP 582 (749)
Q Consensus 515 ~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~ 582 (749)
.|......|.|..+++||-..+.+-+ --|+. ..+-++|-.+....|+..|+..++.--+.+ + .+..+
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s-ed~r~ 230 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS-EDSRS 230 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh-HHHHH
Confidence 34444555666666666665554431 11221 123334444455557777777777654432 3 45556
Q ss_pred HHHHHHHHHHcCCchhHHHHH
Q 004487 583 YVAMSNIYAVAGQWESVSQVK 603 (749)
Q Consensus 583 ~~~l~~~~~~~g~~~~a~~~~ 603 (749)
...|+.+| ..|+.+++.++.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 66666655 566666665554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.4 Score=42.18 Aligned_cols=92 Identities=22% Similarity=0.282 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHH
Q 004487 445 WNALISACAQNGDAQATLKSFEDMVQSGYQPDS----VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKK-EHYASM 519 (749)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l 519 (749)
|+.-+.. .+.|++..|...|...++.. |+. ..+-.|..++...|++++|..+|..+.+.|+-.|.. +.+--|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5544443 33455666666666666632 221 133345566666666666666666666555444432 444444
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 004487 520 VDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~ 539 (749)
.....+.|+.++|...+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 44555555555554444444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.23 E-value=14 Score=37.33 Aligned_cols=209 Identities=18% Similarity=0.170 Sum_probs=124.3
Q ss_pred hcCCHHHHHHHHHhcCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCcCHH--hHHHHHHHhcc---cCcH
Q 004487 322 KCGRFEEAKEIFANLSHIST---VPWTAMISAYVQKGNLEEALNLFIEMCRAN-ISADQA--TFASILRASAE---LASL 392 (749)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~~~~~---~~~~ 392 (749)
+.|..+.|+..-+...+.-. -.|.+.+...+..|+++.|+++++.-.... +.++.. .-..+|.+-+. ..+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 45666666666655543222 226778888899999999999888765532 444432 12233332211 1234
Q ss_pred HHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004487 393 SLGKQLHSFVIRSGFMSNVFSG-SALLDMYAKSGSLKDAIQTFKEMPE--RNIVSWNALISACAQNGDAQATLKSFEDMV 469 (749)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 469 (749)
..++..-.+..+ +.||..-. -.-...|.+.|++.++-.+++.+-+ |.+..|.. -.+++.|+ .++.-+++..
T Consensus 246 ~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~ 319 (531)
T COG3898 246 ASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGD--TALDRLKRAK 319 (531)
T ss_pred HHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHHHHHHHH
Confidence 444444333333 33332221 1234678889999999999888864 44444432 22344554 3443333332
Q ss_pred HC-CCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc-CCHHHHHHHHHhC
Q 004487 470 QS-GYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRS-GCFDEAEKLMAQM 539 (749)
Q Consensus 470 ~~-g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 539 (749)
.. .++||.. +...+..+-...|++..|..--+... ...|....|..|.+.-... |+-.++...+.+.
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 21 2667654 66677778888888888777655544 4678888888887776554 8888888888776
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.7 Score=44.05 Aligned_cols=138 Identities=12% Similarity=0.079 Sum_probs=93.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 004487 449 ISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGC 528 (749)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 528 (749)
.+.|.+.|++..|...|++.... |. +...-+.++...... .-...+..+.-.+.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 35677778888888887776551 00 111111122222211 112345667778888899
Q ss_pred HHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhH-HHHHHH
Q 004487 529 FDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESV-SQVKKA 605 (749)
Q Consensus 529 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 605 (749)
+.+|++.-++. ...| |.-..--=..+|...|+++.|+..|+++++++| .|..+-.-|+.+-.+..+..+. .+++..
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P-~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP-SNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887776 4444 444444446678889999999999999999999 9988888888887777766555 778888
Q ss_pred HHhC
Q 004487 606 MRER 609 (749)
Q Consensus 606 m~~~ 609 (749)
|-..
T Consensus 352 mF~k 355 (397)
T KOG0543|consen 352 MFAK 355 (397)
T ss_pred Hhhc
Confidence 8554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.5 Score=42.05 Aligned_cols=101 Identities=20% Similarity=0.166 Sum_probs=67.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HHhHHHHH
Q 004487 479 SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM----PFEPD-EIMWSSVI 552 (749)
Q Consensus 479 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll 552 (749)
.|+.-+. +...|++.+|.+-|....++|.-.+ ....+-.|...+...|++++|...|..+ |-.|. +..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4554444 3456678888888888887652211 2344556788888888888888887776 33332 34555566
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 004487 553 NSCRIHKNLEFAKKAADQLFKMEKLRDAA 581 (749)
Q Consensus 553 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 581 (749)
......|+.++|...++++.+..| ..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP-~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP-GTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC-CCHH
Confidence 667778888888888888888887 4433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.08 E-value=7.1 Score=37.23 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=36.9
Q ss_pred HhcCCHHHHHHHHHhcCCCCccc------HHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004487 321 AKCGRFEEAKEIFANLSHISTVP------WTAMISAYVQKGNLEEALNLFIEMCRA 370 (749)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~l~~~m~~~ 370 (749)
.+.|++++|.+.|+.+....+.+ --.++.++-+.+++++|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 56788999999998887543333 334556777888999999888887764
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.89 E-value=11 Score=35.48 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=111.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc-chHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHH
Q 004487 410 NVFSGSALLDMYAKSGSLKDAIQTFKEMPE--RNI-VSWNALIS-ACAQNGDAQATLKSFEDMVQSGYQP----DSVSLL 481 (749)
Q Consensus 410 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~ 481 (749)
....+..+...+...+....+.+.+..... ++. ..+..... .+...|+++.|...+.+... ..| ....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 171 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALL 171 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHH
Confidence 334444555556666667777777766553 221 22333333 67888999999999998865 333 233444
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhc
Q 004487 482 SVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIH 558 (749)
Q Consensus 482 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~ 558 (749)
.....+...++.+.+...+...... ... ....+..+...+...+.+++|...+... ...|+ ...+..+...+...
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc
Confidence 4444567788999999999888743 222 3667778888888899999999998887 44454 45555555565577
Q ss_pred CCHHHHHHHHHHHhcCCC
Q 004487 559 KNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 559 g~~~~a~~~~~~~~~~~~ 576 (749)
++.+.+...+++..+..|
T Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 250 GRYEEALEALEKALELDP 267 (291)
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 789999999999999888
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.27 Score=30.35 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 546 IMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 546 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
.+|..+...+...|++++|+..++++++++|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4677777788888888888888888888877
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.67 E-value=4.2 Score=43.82 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=37.7
Q ss_pred CCHHHHHHHHhhCCC--CCcchHHHHH-HHHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCCHHHHHH
Q 004487 425 GSLKDAIQTFKEMPE--RNIVSWNALI-SACAQNGDAQATLKSFEDMVQSGY---QPDSVSLLSVLSACSHCGLIEEGLQ 498 (749)
Q Consensus 425 g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~ 498 (749)
...+.|.++++.+.+ |+...|.-.- ..+...|+.++|++.|++...... +.....+--+...+.-.++|++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 345556666655553 5544444332 223445666666666665432110 1112223333334445555555555
Q ss_pred HHHHhHH
Q 004487 499 YFNSMTQ 505 (749)
Q Consensus 499 ~~~~m~~ 505 (749)
.|..+.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 5555554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.55 E-value=6.3 Score=33.99 Aligned_cols=108 Identities=17% Similarity=0.156 Sum_probs=57.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC
Q 004487 451 ACAQNGDAQATLKSFEDMVQSGYQPD---SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSG 527 (749)
Q Consensus 451 ~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 527 (749)
...+.|++++|.+.|+.+... .+.. ...-..++.+|...|++++|...+++..+-+.-.|++ .|.....+++.-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHH
Confidence 345567777777777777664 2211 2345556667777777777777777776544333332 2333333333222
Q ss_pred CHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 528 CFDEAEKLMAQM-PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 528 ~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
..+ ..+..+ +.+ +..+....|...|+++++.-|
T Consensus 97 ~~~---~~~~~~~~~d-------------rD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 97 QDE---GSLQSFFRSD-------------RDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred Hhh---hHHhhhcccc-------------cCcHHHHHHHHHHHHHHHHCc
Confidence 221 111111 111 122346678888888888887
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.42 Score=29.38 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 547 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
.|..+...+...|++++|+..++++++++|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 456666777777778888888887777777
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.42 E-value=1.5 Score=36.50 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=48.3
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHH---hHHHHHHHHHhc
Q 004487 486 ACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM----PFEPDEI---MWSSVINSCRIH 558 (749)
Q Consensus 486 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~---~~~~ll~~~~~~ 558 (749)
+.+..|+++.|++.|.....- .+.....||.-..++.-.|+.++|++-+++. +-+ ... .|-.-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 345556666666666555421 2224455666666666666666666655554 111 111 122222346777
Q ss_pred CCHHHHHHHHHHHhcCCC
Q 004487 559 KNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 559 g~~~~a~~~~~~~~~~~~ 576 (749)
|+.+.|..-|+.+-+++.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 788888887777777665
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.19 E-value=2.1 Score=38.72 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=66.4
Q ss_pred HHHcCCHHHHHHHHHhC----CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 004487 523 LCRSGCFDEAEKLMAQM----PFEP---DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 523 ~~~~g~~~~A~~~~~~~----~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (749)
+.+.|++++|..-|... |..| ..+.|..-..+..+.+..+.|+.-..+++++.| ....+...-+.+|.+..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhhh
Confidence 45567777777666655 2111 134455555667888999999999999999999 777888888999999999
Q ss_pred chhHHHHHHHHHhCC
Q 004487 596 WESVSQVKKAMRERG 610 (749)
Q Consensus 596 ~~~a~~~~~~m~~~g 610 (749)
+++|.+-++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987754
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.18 E-value=8.9 Score=35.38 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=91.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 004487 442 IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDS-VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMV 520 (749)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 520 (749)
+..||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++-..|+++-|.+-|...-+ -.|+.. |.+|.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DP-fR~LW 172 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDP-FRSLW 172 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCCh-HHHHH
Confidence 35677776667788888888888888877 34432 2333333345567888877765544332 233321 22222
Q ss_pred -HHHHHcCCHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-------CchhHHHHHHHHHH
Q 004487 521 -DILCRSGCFDEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLR-------DAAPYVAMSNIYAV 592 (749)
Q Consensus 521 -~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~ 592 (749)
-.-.+.-+..+|..-+.+--...|..-|+.-|-.+.- |.+. .+.+++++.+-.. + -..+|..|+.-|..
T Consensus 173 LYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~-~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 173 LYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADAT-DNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHhc
Confidence 1222344566666544332223456667766655432 1111 1233333333222 2 25688999999999
Q ss_pred cCCchhHHHHHHHHHhC
Q 004487 593 AGQWESVSQVKKAMRER 609 (749)
Q Consensus 593 ~g~~~~a~~~~~~m~~~ 609 (749)
.|..++|..+++.....
T Consensus 250 ~G~~~~A~~LfKLaian 266 (297)
T COG4785 250 LGDLDEATALFKLAVAN 266 (297)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999999999987654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.18 E-value=17 Score=36.10 Aligned_cols=19 Identities=16% Similarity=-0.041 Sum_probs=13.4
Q ss_pred HHHhcCCHHHHHHHHHHHh
Q 004487 554 SCRIHKNLEFAKKAADQLF 572 (749)
Q Consensus 554 ~~~~~g~~~~a~~~~~~~~ 572 (749)
.+.+.++++.|...|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4566778888888877543
|
It is also involved in sporulation []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.07 E-value=30 Score=38.79 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=66.6
Q ss_pred HHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHH----HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCC
Q 004487 112 NSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALI----TGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGL 187 (749)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 187 (749)
..-+++..+...++.|..+-+.-.- |...-..+. .-+.+.|++++|...|-+-... +.|. .+++-+-..
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 3445556666666777766654332 222222222 2344678888888877665432 2332 234444333
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcCCChHHHHHHHccCC
Q 004487 188 ADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMP 236 (749)
Q Consensus 188 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 236 (749)
.....-...++.+.+.|+..... -+.|+..|.|.++.+.-.++.+...
T Consensus 411 q~IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHHHHHhcCC
Confidence 44444445566666777654333 3678888888888888777776655
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.06 E-value=9.3 Score=38.14 Aligned_cols=127 Identities=17% Similarity=0.096 Sum_probs=76.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHh---HHhcCCCCChHHHHH
Q 004487 447 ALISACAQNGDAQATLKSFEDMVQSGYQP-----DSVSLLSVLSACSHCGLIEEGLQYFNSM---TQKYKLRPKKEHYAS 518 (749)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~~~~~~~ 518 (749)
+|..++...+.++++++.|+...+---.. .-..+..|-+-|....++++|.-+.... .+.+++..-..-|.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 35556666677888888887766521111 1235777777788888888877655432 334444333333333
Q ss_pred H-----HHHHHHcCCHHHHHHHHHhC-------CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004487 519 M-----VDILCRSGCFDEAEKLMAQM-------PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFK 573 (749)
Q Consensus 519 l-----i~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 573 (749)
+ .-+|...|++.+|.+.-++. +-.| .......+.+.|+..|+.|.|..-|+.+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 3 33456666666555555443 4333 244556677788888888888888877654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.03 E-value=2.5 Score=41.47 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=119.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH----HHHHHHHcCCH
Q 004487 454 QNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYAS----MVDILCRSGCF 529 (749)
Q Consensus 454 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~ 529 (749)
-.|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.....++++..+ ..|+...|.- +.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999999885 6777788888889999999999999999888754 3566544443 33456689999
Q ss_pred HHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CCCchhHHHHHHHHHHcCCchhHHHHHH
Q 004487 530 DEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEK---LRDAAPYVAMSNIYAVAGQWESVSQVKK 604 (749)
Q Consensus 530 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 604 (749)
++|++.-++. .+.| |.-.-.++.......|+..++.++.++--..=. -.-...|-..+-.|...+.++.|.+++.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5555 444556677778888999999988776543211 0224556777788888899999999998
Q ss_pred HHHhCCCccCCce
Q 004487 605 AMRERGVRKVTAY 617 (749)
Q Consensus 605 ~m~~~g~~~~~~~ 617 (749)
.=.-..+.++.++
T Consensus 272 ~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 272 REIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHhhccchh
Confidence 7544445555553
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.6 Score=41.64 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=60.4
Q ss_pred HHHHHhcCC--CCCcchHHHHHHHHHcC-----CChhHHHHHHHHhHhcCCCCCCcchHHHHHHhcCCCC----------
Q 004487 25 ARELFNSMV--DRTAVSWTILIGGYSQK-----NQFREAFKLFVDMRTDGGSDPDYVTFATLLSGCSEPD---------- 87 (749)
Q Consensus 25 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~~g~~p~~~~~~~ll~~~~~~~---------- 87 (749)
..+.|...+ ++|-.+|-+++..+... +..+=....++.|++- |+.-|..+|+.||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~ey-GVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEY-GVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh-cchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 345565555 56667777777766543 3444455556667766 78888888888877654432
Q ss_pred ------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCC
Q 004487 88 ------TANELIQVHADIIKFGYNSILIICNSLVDSYCKIRC 123 (749)
Q Consensus 88 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (749)
.-.-+..++++|.-.|+.||..+-..|++++.+.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 122345566666666666666666666666665543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.25 Score=43.48 Aligned_cols=84 Identities=20% Similarity=0.269 Sum_probs=61.2
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHH
Q 004487 79 LLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQKDSVSFNALITGFAKEGLNEEA 158 (749)
Q Consensus 79 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 158 (749)
++..+.+.+.+......++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566677778888888888888877777888999999999999888888888884333 3345566666777777777
Q ss_pred HHHHHHH
Q 004487 159 IKLFVEM 165 (749)
Q Consensus 159 ~~l~~~m 165 (749)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 7766654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.58 Score=29.45 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHH
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 607 (749)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999988888743
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.92 E-value=8.5 Score=38.45 Aligned_cols=92 Identities=16% Similarity=0.342 Sum_probs=55.6
Q ss_pred HHHHHHHHhhCCC-------CCcchHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCCCHH-H-HHHHHHHHhccCC-
Q 004487 427 LKDAIQTFKEMPE-------RNIVSWNALISACAQNGD----AQATLKSFEDMVQSGYQPDSV-S-LLSVLSACSHCGL- 492 (749)
Q Consensus 427 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~-t-~~~ll~a~~~~g~- 492 (749)
..+|..+|+.|++ ++-.++..|+.. ..++ .+.+..+|+.+.+.|+..+.. . ...+|..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 4456667777663 344455555443 2222 356777888888888776544 3 3334433332222
Q ss_pred -HHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 004487 493 -IEEGLQYFNSMTQKYKLRPKKEHYASMVD 521 (749)
Q Consensus 493 -~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 521 (749)
+.++.++++.+.+. ++++...+|..+.-
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 45788888888765 89888888876643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=88.83 E-value=6.4 Score=34.87 Aligned_cols=82 Identities=13% Similarity=0.011 Sum_probs=42.1
Q ss_pred HhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 004487 422 AKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQ 498 (749)
Q Consensus 422 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 498 (749)
...|++++|..+|+-+. .-+..-|..|...+-..+++++|+..|......+. -|...+-....++...|+.+.|+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 34566666666665443 12333455555555556666666666655544321 122233334445555666666666
Q ss_pred HHHHhH
Q 004487 499 YFNSMT 504 (749)
Q Consensus 499 ~~~~m~ 504 (749)
.|+...
T Consensus 127 ~f~~a~ 132 (165)
T PRK15331 127 CFELVN 132 (165)
T ss_pred HHHHHH
Confidence 665544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.33 E-value=33 Score=35.22 Aligned_cols=149 Identities=9% Similarity=0.018 Sum_probs=85.2
Q ss_pred hcccCcHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc---------------hHHHHH
Q 004487 386 SAELASLSLGKQLHSFVIRSGFM-SNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIV---------------SWNALI 449 (749)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li 449 (749)
+...++.+.+.++-..+.+..-. .+....+. .++.-.++.+.|...|++...-|+. .|.-=.
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg--~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRG--LCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhcc--cccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 35567777777766666554311 11111111 1222346778888888877643222 122223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHH
Q 004487 450 SACAQNGDAQATLKSFEDMVQSG---YQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKK-EHYASMVDILCR 525 (749)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~ 525 (749)
+-..+.|++..|.+.|.+.+... .+|+...|.....+..+.|+.++|+.--+... .+.|.- ..|-.-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHH
Confidence 34567788888888888887621 33444456566666778888888888776554 333321 122222334455
Q ss_pred cCCHHHHHHHHHhC
Q 004487 526 SGCFDEAEKLMAQM 539 (749)
Q Consensus 526 ~g~~~~A~~~~~~~ 539 (749)
.+++++|.+-+++.
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 66788888877776
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.24 E-value=29 Score=34.47 Aligned_cols=235 Identities=10% Similarity=-0.015 Sum_probs=106.9
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCcCHHhHHHHH
Q 004487 308 SEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNL----EEALNLFIEMCRANISADQATFASIL 383 (749)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll 383 (749)
+|..+....+..+.+.|..+....+..-+...|...-...+.++.+.|+. .+++..+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444455555555555433333333333344444444455556666653 3566666655332 34544444444
Q ss_pred HHhcccCcHHH--HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcC-CHHH
Q 004487 384 RASAELASLSL--GKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNG-DAQA 460 (749)
Q Consensus 384 ~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~ 460 (749)
.++...+.... .......+...-..++..+-...+.++++.|+.+....+..-+..+|...-..-+.++.+.+ +...
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH
Confidence 44444332110 11112222222223344555556666666665433333333333444444444444444432 1334
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 004487 461 TLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM- 539 (749)
Q Consensus 461 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 539 (749)
+...+..+.. .+|...-...+.+..+.|+ .++...+-...+. ++ .....+.+++..|.. +|...+.++
T Consensus 193 ~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 193 IREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 5555555543 3455555556666666665 3444444333321 12 223455666666663 455555554
Q ss_pred CCCCCHHhHHHHHHHH
Q 004487 540 PFEPDEIMWSSVINSC 555 (749)
Q Consensus 540 ~~~p~~~~~~~ll~~~ 555 (749)
.-.||..+-...+.+|
T Consensus 262 ~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 262 YKFDDNEIITKAIDKL 277 (280)
T ss_pred hhCCChhHHHHHHHHH
Confidence 2234544444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.09 E-value=18 Score=36.11 Aligned_cols=147 Identities=13% Similarity=0.208 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHHcCCH
Q 004487 458 AQATLKSFEDMVQSGYQPDSVSLLSVLSACSH--CG----LIEEGLQYFNSMTQKYKLRP--KKEHYASMVDILCRSGCF 529 (749)
Q Consensus 458 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~ 529 (749)
+++.+.+++.|.+.|++-+..+|.+....... .. ...++..+++.|++++..-- +...+..|+.. +.++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788999999998888777664433322 22 35678899999998765433 33444444332 44444
Q ss_pred HH----HHHHHHhC---CCCC-CHHhH-HHHHHHHHhcCC--HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchh
Q 004487 530 DE----AEKLMAQM---PFEP-DEIMW-SSVINSCRIHKN--LEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWES 598 (749)
Q Consensus 530 ~~----A~~~~~~~---~~~p-~~~~~-~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 598 (749)
++ ++..++.+ ++.. |..-+ ..++..+-...+ +..+..+++.+.+.+.+.....|-.++-+-.-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 33 33334333 5554 33333 333333322222 45677888888887774555556655544434444424
Q ss_pred HHHHHHHH
Q 004487 599 VSQVKKAM 606 (749)
Q Consensus 599 a~~~~~~m 606 (749)
...-+..+
T Consensus 236 ~~~~i~ev 243 (297)
T PF13170_consen 236 IVEEIKEV 243 (297)
T ss_pred HHHHHHHH
Confidence 44444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=88.09 E-value=15 Score=31.05 Aligned_cols=139 Identities=12% Similarity=0.199 Sum_probs=68.3
Q ss_pred HhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004487 352 VQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAI 431 (749)
Q Consensus 352 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 431 (749)
.-.|..++..++..+...+ .+..-++.++--.....+-+...+.++ .-|-..|.. .||++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~Ld---sIGkiFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLD---SIGKIFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHH---HHGGGS-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHH---HHhhhcCch----------hhcchHHHH
Confidence 3456777777777776653 234444444433333333333333222 222222221 233333333
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 004487 432 QTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKL 509 (749)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 509 (749)
..+-.+. .+......-+..+...|+-++-.+++.++... -+|+......+..||.+.|+..++.+++.+..++ |+
T Consensus 77 ~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 77 ECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3333222 12223344566677778888877888777653 4677777778888888888888888888777654 44
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.91 E-value=63 Score=38.03 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=38.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc
Q 004487 449 ISACAQNGDAQATLKSFEDMVQSGYQPDSVS--LLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRS 526 (749)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 526 (749)
+.+|...|++.+|+.+..+|.. .-|... -..|.+-+...++.-+|-++...... .| .--+..|+++
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka 1039 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhH
Confidence 4445555555555555554422 112211 13445555666666666655544332 12 1234556666
Q ss_pred CCHHHHHHHHHhC
Q 004487 527 GCFDEAEKLMAQM 539 (749)
Q Consensus 527 g~~~~A~~~~~~~ 539 (749)
..+++|..+....
T Consensus 1040 ~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1040 KEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHHHhc
Confidence 6666666665544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.83 E-value=0.84 Score=28.68 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKM 574 (749)
Q Consensus 547 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 574 (749)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888885543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.83 E-value=1.6 Score=28.93 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004487 444 SWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV 478 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 478 (749)
+|..+...|.+.|++++|.++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 455666667777777777777777766 345443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.67 E-value=27 Score=33.48 Aligned_cols=57 Identities=7% Similarity=0.046 Sum_probs=46.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCC---chhHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 004487 552 INSCRIHKNLEFAKKAADQLFKMEKLRD---AAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 552 l~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
..-|.+.|.+.-|..-++++++.-| .. ...+..|..+|...|..++|.+..+-+...
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~-~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYP-DTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3457788999999999999998866 43 345667888999999999999998887654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.57 E-value=8.4 Score=34.19 Aligned_cols=118 Identities=14% Similarity=0.210 Sum_probs=51.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH-----HHHHHHc
Q 004487 453 AQNGDAQATLKSFEDMVQSGYQPDSV-SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASM-----VDILCRS 526 (749)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~ 526 (749)
++.+..++|+.-|.++.+.|..-=.+ ............|+-..|...|+++-.. .|.+....-+ .-++...
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhcc
Confidence 34444555555555555544322111 1111222244455555555555555433 1111111111 1123445
Q ss_pred CCHHHHHHHHHhCCCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004487 527 GCFDEAEKLMAQMPFE--P-DEIMWSSVINSCRIHKNLEFAKKAADQLFK 573 (749)
Q Consensus 527 g~~~~A~~~~~~~~~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 573 (749)
|.+++.....+.+... | ....-.+|.-+-.+.|++..|...|+.+..
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555555554211 1 122334444455566666666666666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.51 E-value=3.8 Score=39.98 Aligned_cols=76 Identities=17% Similarity=0.314 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHH-----CCCCcCHHhHHH
Q 004487 310 VKVANSLVDMYAKCGRFEEAKEIFANLSHI---STVPWTAMISAYVQKGNLEEALNLFIEMCR-----ANISADQATFAS 381 (749)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 381 (749)
..++..++..+..+|+.+.+.+.++++.+. +...|..++.+|.++|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345677889999999999999999988754 445599999999999999999999999866 567776665544
Q ss_pred HHHH
Q 004487 382 ILRA 385 (749)
Q Consensus 382 ll~~ 385 (749)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.40 E-value=4.1 Score=28.33 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCC
Q 004487 582 PYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGY 658 (749)
Q Consensus 582 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 658 (749)
....++-++.+.|++++|.+..+.+.+. +|...+.......+.++|++.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 3557888999999999999999998764 45555555555667777877774
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=87.28 E-value=9.1 Score=38.18 Aligned_cols=162 Identities=12% Similarity=0.136 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CC--ChHH
Q 004487 444 SWNALISACAQNGDAQATLKSFEDMVQ-SGYQPDS---VSLLSVLSACSHCGLIEEGLQYFNSMTQKYKL--RP--KKEH 515 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~ 515 (749)
.|-.+..++-+.-++.+++.+-..-.. .|..|.. ....++..|....+.++++++.|+...+-..- .| ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444555444455555554433222 2333311 23334566677777899999999877642111 12 2357
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHhHH-----HHHHHHHhcCCHHHHHHHHHHHhcCCCC-CC---
Q 004487 516 YASMVDILCRSGCFDEAEKLMAQM-------PFEPDEIMWS-----SVINSCRIHKNLEFAKKAADQLFKMEKL-RD--- 579 (749)
Q Consensus 516 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~--- 579 (749)
|..|...|.+..++++|.-+..+. +++.=..-|. -+.-+++..|.+-.|.+..+++.++... .|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 889999999999999876554443 3332122333 2345789999999999998888664320 23
Q ss_pred -chhHHHHHHHHHHcCCchhHHHHHHH
Q 004487 580 -AAPYVAMSNIYAVAGQWESVSQVKKA 605 (749)
Q Consensus 580 -~~~~~~l~~~~~~~g~~~~a~~~~~~ 605 (749)
......++++|...|+.|.|-.-++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 34455899999999998887665554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=87.17 E-value=44 Score=35.38 Aligned_cols=96 Identities=11% Similarity=0.229 Sum_probs=64.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCC--HHhHHHHHHHHH
Q 004487 481 LSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMP-F-EPD--EIMWSSVINSCR 556 (749)
Q Consensus 481 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~ll~~~~ 556 (749)
..+..++-+.|+.++|.+.|.+|.+.+...-.......|+..|...+.+.++..++.+-. + -|. ...|++.+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345556677899999999999998664322234456678899999999999999988873 1 233 455665554444
Q ss_pred hcCC---------------HHHHHHHHHHHhcCCC
Q 004487 557 IHKN---------------LEFAKKAADQLFKMEK 576 (749)
Q Consensus 557 ~~g~---------------~~~a~~~~~~~~~~~~ 576 (749)
.-++ -..|.+++.++++.+|
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 3333 1235577888877776
|
The molecular function of this protein is uncertain. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.07 E-value=21 Score=31.57 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=45.7
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCCHHHH
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRPKKE-HYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWSSVINSCRIHKNLEFA 564 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a 564 (749)
-...++.+++..+++.+. -+.|... +-..-.-.+.+.|++.+|..++++. .-.|....-.+|+.-|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 445566777777776665 3445432 2122233456677777777777776 2233333444555555444333333
Q ss_pred HHHHHHHhcCCC
Q 004487 565 KKAADQLFKMEK 576 (749)
Q Consensus 565 ~~~~~~~~~~~~ 576 (749)
....+++++.++
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 344555555554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.05 E-value=34 Score=33.98 Aligned_cols=75 Identities=9% Similarity=-0.032 Sum_probs=41.4
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHh
Q 004487 307 ISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASILRAS 386 (749)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 386 (749)
.++..+....+.++++.|+.+....+.+.+...+ ..-..+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3455555666666666666443333333333333 234566777777774 677777777653 34555554444444
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.04 E-value=31 Score=33.58 Aligned_cols=57 Identities=11% Similarity=-0.013 Sum_probs=51.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 551 VINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 551 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
....|...|++.+|.++.++++.++| -+...+..|.+.++..|+--.|.+-++.+.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34568899999999999999999999 9999999999999999998888888887744
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.85 E-value=10 Score=34.59 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC------hHHHH
Q 004487 446 NALISACAQNGDAQATLKSFEDMVQSGYQPDSV--SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK------KEHYA 517 (749)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~ 517 (749)
..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..+...-..-..+ ...|.
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~ 119 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYE 119 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 334444444555555555555544443333332 2334444444455555544444443321100001 12222
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 004487 518 SMVDILCRSGCFDEAEKLMAQM 539 (749)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~ 539 (749)
.+. +...+++.+|-+.|-..
T Consensus 120 gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 120 GLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHH--HHHhchHHHHHHHHHcc
Confidence 222 22356777776666555
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.08 E-value=33 Score=35.36 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=56.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchhHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 004487 544 DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLR---DAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 544 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
...+|..+...++++|+++.|...+.++.+..+.. .+.....-+......|+.++|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999876322 456777779999999999999999988877433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.92 E-value=33 Score=32.82 Aligned_cols=243 Identities=13% Similarity=0.229 Sum_probs=144.2
Q ss_pred hcCCHHHHHHHHHhcCCC-------CcccHHHHHHHHHhCCChhHHHHHHHHHHH---CCC--CcCHHhHHHHHHHhccc
Q 004487 322 KCGRFEEAKEIFANLSHI-------STVPWTAMISAYVQKGNLEEALNLFIEMCR---ANI--SADQATFASILRASAEL 389 (749)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~--~p~~~t~~~ll~~~~~~ 389 (749)
+..++++|..-|+.+.+. +....-.||..+.+.+++++.+..+.+|.. +.+ .-+..+.++++...+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345678888888876532 222345688999999999999999998864 222 23556777777776666
Q ss_pred CcHHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC-------cchHHHHH
Q 004487 390 ASLSLGKQLHSFVIRS-----GFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE--------RN-------IVSWNALI 449 (749)
Q Consensus 390 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li 449 (749)
.+.+.-..+++...+. +-..--.+-+-|...|...|++.+-.+++.++.+ .| ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6655555554433221 1111222334567778888888888888776641 11 23566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-----ccCCHHHHHHHHHHhHHhcCC--CCCh---HHHHHH
Q 004487 450 SACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACS-----HCGLIEEGLQYFNSMTQKYKL--RPKK---EHYASM 519 (749)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~--~p~~---~~~~~l 519 (749)
..|....+-.+-..+|++...-.-.........+++-|. +.|.+++|-.-|-+..+.|.- .|.. --|-.|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 778888888888888888765332222334445666664 568888876544444444432 2322 224556
Q ss_pred HHHHHHcCCHHHHHHHHHhC---CCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 004487 520 VDILCRSGCFDEAEKLMAQM---PFE--PDEIMWSSVINSCRIHKNLEFAKKAADQ 570 (749)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~---~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 570 (749)
..++.+.|-- -|+.- |.+ |.......|+.+|.. +++.+-++++..
T Consensus 279 ANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 279 ANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 6777776621 11111 333 445666788888755 455555554443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.35 E-value=70 Score=36.00 Aligned_cols=49 Identities=24% Similarity=0.245 Sum_probs=35.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhCCCC
Q 004487 139 SVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSAGVGLAD 189 (749)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 189 (749)
...| ++|--+.+.|++++|.++..+... ........|...+..+....+
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~ 160 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPD 160 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTS
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCC
Confidence 3456 567788999999999999855543 356667788889999877643
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.27 E-value=27 Score=31.24 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 004487 315 SLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGNLEEALNLFIEMCR 369 (749)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (749)
.+++.+...|++-+|.+..+.....+.++-..++.+-.+.++..-=..+|+-..+
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666666666665544445555555555555555444444444433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.57 E-value=1.5 Score=26.92 Aligned_cols=30 Identities=7% Similarity=0.024 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 547 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
+|..+...+...|+.++|...+++.+++.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455666667777777777777777777666
|
... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.28 E-value=78 Score=35.64 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=42.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHhcccCcHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHh---
Q 004487 348 ISAYVQKGNLEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSG-FMSNVFSGSALLDMYAK--- 423 (749)
Q Consensus 348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~--- 423 (749)
...+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-+.-.+... ..+.... -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4556678999999998876 3445678888887777664443322221 1111111 11112445677777775
Q ss_pred cCCHHHHHHHHhhCC
Q 004487 424 SGSLKDAIQTFKEMP 438 (749)
Q Consensus 424 ~g~~~~A~~~~~~~~ 438 (749)
..+..+|.+.|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 356777777776554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.09 E-value=55 Score=33.73 Aligned_cols=148 Identities=11% Similarity=0.054 Sum_probs=76.0
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hH
Q 004487 440 RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP---DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK--KE 514 (749)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 514 (749)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+-.+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 445677888888888888888888888877643211 2223333344455677778888877776652 11111 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHHhHHHHHHHHHh------cCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 004487 515 HYASMVDILCRSGCFDEAEKL-MAQMPFEPDEIMWSSVINSCRI------HKNLEFAKKAADQLFKMEKLRDAAPYVAMS 587 (749)
Q Consensus 515 ~~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 587 (749)
....+...+.. ..+..... ........-..++..+..-+.. .++.+++...|+++.++.| .....|..++
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~k~~~~~a 299 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP-SWEKAWHSWA 299 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh-hHHHHHHHHH
Confidence 11111100000 00000000 0000000001222222222333 3788999999999999999 7777777777
Q ss_pred HHHH
Q 004487 588 NIYA 591 (749)
Q Consensus 588 ~~~~ 591 (749)
..+.
T Consensus 300 ~~~~ 303 (352)
T PF02259_consen 300 LFND 303 (352)
T ss_pred HHHH
Confidence 6653
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.85 E-value=9.8 Score=30.06 Aligned_cols=50 Identities=10% Similarity=0.183 Sum_probs=38.0
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 004487 537 AQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMS 587 (749)
Q Consensus 537 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 587 (749)
-.+...|++.+..+.+.||++-+|+..|.++++.+...-. .+...|-.++
T Consensus 34 ~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~-~~~~~y~~~l 83 (103)
T cd00923 34 FGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG-AHKEIYPYIL 83 (103)
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-CchhhHHHHH
Confidence 3346779999999999999999999999999998875443 2444555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.70 E-value=5.2 Score=39.12 Aligned_cols=61 Identities=10% Similarity=0.250 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 547 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
++..++..+...|+.+.+...+++++..+| -+...|..+..+|.+.|+...|...++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 445566666777778888888888888888 7888888888888888888888888877765
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.67 E-value=47 Score=32.62 Aligned_cols=117 Identities=13% Similarity=0.115 Sum_probs=69.3
Q ss_pred hcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CcchHH---HHHHHHHhcCCHHHH
Q 004487 386 SAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPER-NIVSWN---ALISACAQNGDAQAT 461 (749)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~---~li~~~~~~g~~~~A 461 (749)
....++...+..+++......-.. ....-.++..|...|+.+.|..++..++.. ...-|. +-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 345566667777666666544332 344556788899999999999999998832 111222 223333333333333
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 004487 462 LKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQK 506 (749)
Q Consensus 462 ~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 506 (749)
..+-.+.-. .| |...-..+...+...|+.++|.+.+-.+.++
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333332 35 4445556667788888888888776666544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.10 E-value=2.5 Score=25.83 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004487 444 SWNALISACAQNGDAQATLKSFEDMVQSGYQPD 476 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 476 (749)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 566677777777788888887777776 4454
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=82.61 E-value=5.4 Score=35.13 Aligned_cols=70 Identities=14% Similarity=0.042 Sum_probs=34.4
Q ss_pred HcCCHHHHHHHHHhC-CCCCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 004487 525 RSGCFDEAEKLMAQM-PFEPDEIMWSSVI-NSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 525 ~~g~~~~A~~~~~~~-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (749)
+.++.+++..+++.+ -..|.......+- ..+...|++.+|..+++.+.+..| ..+..-..++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~-~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP-GFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHHcCC
Confidence 455566666666555 3334322222221 224455666666666666555555 444444444444444443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.27 E-value=9.5 Score=37.29 Aligned_cols=100 Identities=14% Similarity=0.195 Sum_probs=70.9
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004487 405 SGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE-------RNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDS 477 (749)
Q Consensus 405 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 477 (749)
.|.+.+..+...+++.-....+++++...+-++.. ++... .+.+..+. .-++++++.++..=++.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 35555566666677766777788888877766652 22111 12233222 34677999998888899999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 004487 478 VSLLSVLSACSHCGLIEEGLQYFNSMTQK 506 (749)
Q Consensus 478 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 506 (749)
.|+..+++.+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999988887766543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.00 E-value=41 Score=30.78 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH-----HHHHHHcCCHHHH
Q 004487 460 ATLKSFEDMVQSGYQPDSVSLL--SVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASM-----VDILCRSGCFDEA 532 (749)
Q Consensus 460 ~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A 532 (749)
+.....+++....-+....++. .+..++...|++++|...++.... .|..+.+..+ .......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555556665542122222232 233457888999999988876652 2444445444 4567788999999
Q ss_pred HHHHHhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 004487 533 EKLMAQMPFEPD--EIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 533 ~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
++.++...- ++ ...-..-...+...|+-++|...|++.++.++
T Consensus 146 L~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 146 LKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 999987521 11 11122233567888999999999999998865
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.90 E-value=38 Score=30.35 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=27.4
Q ss_pred HHHHHHHcCCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004487 214 ALLDLYSKHDCVVEARKLFGEMPEVDGVSYNVMITCYAWNEQYKESLKLFREL 266 (749)
Q Consensus 214 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 266 (749)
.+++.+...|++-+|.++.......+...-..++.+-.+.++...-..+|+-.
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555666666666665544444444455555555555544444444333
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=81.54 E-value=22 Score=28.31 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=45.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004487 418 LDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLS 482 (749)
Q Consensus 418 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 482 (749)
+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 345667899999999999888899999877754 46677777777777787776 455555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.47 E-value=2.9 Score=41.08 Aligned_cols=111 Identities=13% Similarity=0.120 Sum_probs=77.4
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhcCCH
Q 004487 485 SACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNL 561 (749)
Q Consensus 485 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 561 (749)
+-|.+.|.+++|+..+..-. .+.| ++..+..-..+|.+..++..|+.-.+.. .+.. -.-.|.--+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 46999999999999998766 4566 7778888888999999998887766554 1110 123444444444567889
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 004487 562 EFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVK 603 (749)
Q Consensus 562 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 603 (749)
++|.+-++.+++++| .+. -|-..|++.....++.-+.
T Consensus 182 ~EAKkD~E~vL~LEP-~~~----ELkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 182 MEAKKDCETVLALEP-KNI----ELKKSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHhHHHHHhhCc-ccH----HHHHHHHHhcchHhhhHHh
Confidence 999999999999999 432 3445565655555554443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=81.04 E-value=22 Score=32.43 Aligned_cols=94 Identities=19% Similarity=0.133 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 004487 412 FSGSALLDMYAKSGSLKDAIQTFKEMPERN------IVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD---SVSLLS 482 (749)
Q Consensus 412 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ 482 (749)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+....--.+. ...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456778999999999999999999988543 34566788888889999999888877665322222 222222
Q ss_pred HHH--HHhccCCHHHHHHHHHHhHH
Q 004487 483 VLS--ACSHCGLIEEGLQYFNSMTQ 505 (749)
Q Consensus 483 ll~--a~~~~g~~~~a~~~~~~m~~ 505 (749)
+.. ++...+++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 222 24567899999988866553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 6e-11
Identities = 97/732 (13%), Positives = 200/732 (27%), Gaps = 245/732 (33%)
Query: 17 VKSGN-LATARELFNSMVDRTAVSWTILIGGYSQKNQFREAFKLFVDMRTDGGSDPDYVT 75
+ S + ++ LF WT+L K + E + FV+ +Y
Sbjct: 55 IMSKDAVSGTLRLF----------WTLL-----SKQE--EMVQKFVE----EVLRINYKF 93
Query: 76 FATLLSG-CSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRVFKEM 134
+ + +P + D + YN N + Y +++R
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRL---YND-----NQVFAKY------NVSR------ 133
Query: 135 PQKDSVSFNALITGFAKEGLNE--EAIKLFVE-MQHLGFKPSDFTFAAALSAGVG---LA 188
Q + L ++ L E A + ++ + G G +A
Sbjct: 134 LQP----YLKL-----RQALLELRPAKNVLIDGV-----------------LGSGKTWVA 167
Query: 189 DIALGRQVHAFVVKTNFVENVF------------VANALLDLYSKHDCVVEARKLFGEMP 236
++ V+ +F V L L + D +R
Sbjct: 168 LDVC----LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 237 EVDGVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQ 296
++ S + ++ Y+ L + +Q + N +L
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQ----NAK----------AWNAFNLS---- 265
Query: 297 IHTQTIVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQKGN 356
+ ++TT +V + L +
Sbjct: 266 --CKILLTT--RFKQVTDFLSAATTTHISLDHHSMTL----------------------T 299
Query: 357 LEEALNLFIEMCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSA 416
+E +L ++ + L + +
Sbjct: 300 PDEVKSLLLKY--LDCRPQD------LPREV--------LTTNPRRL------------- 330
Query: 417 LLDMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD 476
+ A+S ++D + T+ N +I + + K F+ + P
Sbjct: 331 --SIIAES--IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VFPP 383
Query: 477 SV----SLLSVLSACSHCGLIEEGLQYFNSMTQKYKL---RPKKEHYASMVDILCRSGCF 529
S LLS++ +I+ + + KY L +PK+ S+ I
Sbjct: 384 SAHIPTILLSLI----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVK 438
Query: 530 DEAEKLMAQMPFEPDEIMWSSVINSCRIHKNLE---FAKKAADQLFKMEKLRDAAPYVA- 585
E E + + S+++ I K + DQ F ++
Sbjct: 439 LENEYALHR-----------SIVDHYNIPKTFDSDDLIPPYLDQYF--------YSHIGH 479
Query: 586 -MSNIYAVAGQWESVSQVKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRR 644
+ N E ++ + + + ++E K + H TA +
Sbjct: 480 HLKN----IEHPERMTLFRMVFLD--------FRFLEQKIR-HDSTAWNA--------SG 518
Query: 645 KIENLMQEMKKEGYKPDTSCALHDEDEEIKVESLK----------YHSERLAIA-FALIN 693
I N +Q++K YKP +D E V ++ S+ + AL+
Sbjct: 519 SILNTLQQLKF--YKPYIC--DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 694 TPEGSPILVMKN 705
E I +
Sbjct: 575 --EDEAIFEEAH 584
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.2 bits (144), Expect = 2e-09
Identities = 37/304 (12%), Positives = 89/304 (29%), Gaps = 23/304 (7%)
Query: 369 RANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLK 428
+A S + A +L+ + SL + + ++ A + L
Sbjct: 85 QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP 144
Query: 429 DAIQTFKEMPER-------NIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLL 481
A + + +NA++ A+ G + + + +G PD +S
Sbjct: 145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204
Query: 482 SVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQMPF 541
+ L ++ + L+ + A ++ R+ K+
Sbjct: 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSL 264
Query: 542 EPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQ 601
P +N+ ++ +++ +AK K+ + + E S+
Sbjct: 265 PPQLP---PPVNTSKLLRDV-YAKDGRVSYPKLHLPLKTLQCLFEKQL-----HMELASR 315
Query: 602 VKKAMRERGVRKVTAYSWVELKSKVHVFTANDELHPQTNEIRRKIENLMQEMKKEGYKPD 661
V E+ + + K T + R + +++E Y+
Sbjct: 316 VCVVSVEK-------PTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGR 368
Query: 662 TSCA 665
S
Sbjct: 369 FSLY 372
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.1 bits (141), Expect = 5e-09
Identities = 37/372 (9%), Positives = 96/372 (25%), Gaps = 64/372 (17%)
Query: 314 NSLVDMYAKCGRFEEAKEIF-------ANLSHISTVPWTAMISAYVQKGNLEEALNLFIE 366
+ + A + ++ + A++ + ++G +E + +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 367 MCRANISADQATFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGS 426
+ A ++ D ++A A L +
Sbjct: 191 VKDAGLTPDLLSYA-----------------------------------AALQCMGRQDQ 215
Query: 427 LKDAIQT-FKEMPERNI----VSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSV--- 478
I+ ++M + + + L+S + +A K P V
Sbjct: 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275
Query: 479 SLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQ 538
LL + A + ++ ++ + E + + + E A+
Sbjct: 276 KLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHAR 335
Query: 539 MPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAP-----YVAMSNIYAVA 593
+ W + ++ + F + + + + A+
Sbjct: 336 KTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALP 395
Query: 594 GQWESVSQVKKAMRERGVRKVTAY---------SWVELKSKVHVFTANDELHPQTNEIRR 644
Q ES + + + + R + + K A+D P+ R+
Sbjct: 396 AQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQ 455
Query: 645 KIENLMQEMKKE 656
E L
Sbjct: 456 YWEALGAPEALR 467
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.9 bits (138), Expect = 9e-09
Identities = 28/209 (13%), Positives = 56/209 (26%), Gaps = 7/209 (3%)
Query: 43 LIGGYSQKNQFREAFKLFVDMRTDG--GSDPDYVTFATLLSGCSEPDTANELIQVHADII 100
L+ K G + F + A+ L+ VH
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 101 KFGYNSILIICNSLVDSYCKIRCLDLARRVFKEMPQK----DSVSFNALITGFAKEGLNE 156
+ L + N+++ + + V + D +S+ A + ++ +
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 157 EAI-KLFVEMQHLGFKPSDFTFAAALSAGVGLADIALGRQVHAFVVKTNFVENVFVANAL 215
I + +M G K A LS + +V + + L
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
Query: 216 LDLYSKHDCVVEARKLFGEMPEVDGVSYN 244
L D V KL + + +
Sbjct: 278 LRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 4e-07
Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 9/131 (6%)
Query: 12 LISGYVKSGNLATARELFNSMVDR-------TAVSWTILIGGYSQKNQFREAFKLFVDMR 64
+ + L A L + T + ++ G++++ F+E + ++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 65 TDGGSDPDYVTFATLLSGCSEPDTANELIQ-VHADIIKFGYNSILIICNSLVDSYCKIRC 123
G + PD +++A L D I+ + + G + L+ +
Sbjct: 193 DAGLT-PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 124 LDLARRVFKEM 134
L +V
Sbjct: 252 LKAVHKVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.5 bits (124), Expect = 5e-07
Identities = 44/395 (11%), Positives = 99/395 (25%), Gaps = 69/395 (17%)
Query: 71 PDYVTFATLLSGCSEPDTANELIQVHADIIKFGYNSILIICNSLVDSYCKIRCLDLARRV 130
P A LL + + + + + L LA +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 131 FKEMPQK-------DSVSFNALITGFAKEGLNEEAIKLFVEMQHLGFKPSDFTFAAALSA 183
+ +NA++ G+A++G +E + + ++ G P ++AAAL
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ- 208
Query: 184 GVGLADIALGRQVHAFVVKTNFVENVFVANALLDLYSKHDCVVEARKLFGEMPE----VD 239
+GR + + +M + +
Sbjct: 209 -------CMGR--------------------------QDQDAGTIERCLEQMSQEGLKLQ 235
Query: 240 GVSYNVMITCYAWNEQYKESLKLFRELQFTRFDRSQFPFSTLLSVVANKLDLQIGRQIHT 299
+ V+++ K K+ S LL V K ++H
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL 295
Query: 300 QTIVTTAISEV-----KVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMISAYVQK 354
+ E + V K + + W +
Sbjct: 296 PLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQW---------E 346
Query: 355 GNLEEALNLFIEMCRANISADQATFASILRA--SAELASLSLGKQLHSFVIRSGFMSNVF 412
L AL + + + L E+ + L + L + + + +
Sbjct: 347 KALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLL-QVLQALPAQGESFTTLA 405
Query: 413 S-------GSALLDMYAKSGSLKDAIQTFKEMPER 440
++ SG ++ +++
Sbjct: 406 RELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCL 440
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-04
Identities = 20/182 (10%), Positives = 52/182 (28%), Gaps = 13/182 (7%)
Query: 421 YAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSL 480
Y + K + + A + A + + + + +
Sbjct: 44 YLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTF 103
Query: 481 LSVLSAC-SHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM 539
L + ++ + + L+ + A V IL + D A K + +M
Sbjct: 104 LLMAASIYFYDQNPDAALRTLHQGDSLE-------CMAMTVQILLKLDRLDLARKELKKM 156
Query: 540 -PFEPDEI---MWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595
+ D + ++ ++ + L+ A ++ + + G+
Sbjct: 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGR 215
Query: 596 WE 597
WE
Sbjct: 216 WE 217
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 34/241 (14%), Positives = 66/241 (27%), Gaps = 23/241 (9%)
Query: 302 IVTTAISEVKVANSLVDMYAKCGRFEEAKEIFANLSHISTVPWTAMI-----SAYVQKGN 356
I ++ E++ + A R + S S Y N
Sbjct: 57 IKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN 116
Query: 357 LEEALNLFIEMCRANISADQA-TFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGS 415
+ AL + A + R L + + +
Sbjct: 117 PDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLAT------ 170
Query: 416 ALLDMYAKSGSLKDAIQTFKEMPER---NIVSWNALISACAQNGDAQATLKSFEDMVQSG 472
A + + A L+DA F+EM ++ ++ N + G +A ++ +
Sbjct: 171 AWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK- 229
Query: 473 YQPDSVSLLSVLSACS-HCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDE 531
L L S H G E + S +L+ + + + + FD
Sbjct: 230 -DSGHPETLINLVVLSQHLGKPPEVTNRYLS-----QLKDAHRSHPFIKEYRAKENDFDR 283
Query: 532 A 532
Sbjct: 284 L 284
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 40.3 bits (93), Expect = 5e-04
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 13/41 (31%)
Query: 638 QTNEIRRKIENLMQEMKKEGYKPDTSCALHDEDEEIK--VE 676
+ ++ K++ +K Y D++ AL IK +E
Sbjct: 18 EKQALK-KLQA---SLKL--YADDSAPAL-----AIKATME 47
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 749 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.26 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.18 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.14 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.05 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.98 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.96 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.96 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.79 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.56 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.54 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.48 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.44 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.35 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.27 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.19 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.19 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.17 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.08 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.07 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.96 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.96 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.95 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.92 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.91 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.82 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.82 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.7 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.69 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.57 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.45 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.42 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.42 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.29 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.2 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.2 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.13 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.08 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.92 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.76 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.7 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 96.19 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.15 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.08 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.96 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 85.52 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3e-20 Score=145.06 Aligned_cols=212 Identities=12% Similarity=0.142 Sum_probs=146.8
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCCCHHHHHHHHHHH
Q ss_conf 6999999823517479899999999980999725389999999991399989999984099---9982059999999994
Q 004487 378 TFASILRASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQ 454 (749)
Q Consensus 378 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 454 (749)
.+..+...+...+..+.+...+....... +.+...+..+...+...|++++|...++... ..+...+..+...+..
T Consensus 171 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 249 (388)
T d1w3ba_ 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99863630102471999999999999849-46499999971552200529999999998577755479999999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 4998899999999998799989-999999999986138799999999993884299888589999999999829977899
Q 004487 455 NGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAE 533 (749)
Q Consensus 455 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 533 (749)
.|++++|+..|++..+ ..|+ ..++..+..++...|++++|.+.++..... .+.+...+..+...+...|++++|.
T Consensus 250 ~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 325 (388)
T d1w3ba_ 250 QGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp TTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf 7899999999999998--49998999999999999748799999999865404--8730010157999999878999999
Q ss_pred HHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 999849-99999-786999999997159988999999998627888995259999899887299
Q 004487 534 KLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 534 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (749)
+.+++. ...|+ ..+|..+...+...|++++|+..++++++++| .++..|..++.+|.+.|+
T Consensus 326 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCC
T ss_conf 999999986889899999999999985999999999999997099-989999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.8e-19 Score=140.00 Aligned_cols=237 Identities=15% Similarity=0.128 Sum_probs=186.6
Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 823517479899999999980999725389999999991399989999984099---99820599999999944998899
Q 004487 385 ASAELASLSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQAT 461 (749)
Q Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 461 (749)
.....+....+........... +.....+..+...+...|+.+.|...++... ..+...|..+...+...|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 222 (388)
T d1w3ba_ 144 LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHH
T ss_conf 2211000135678888740258-610689986363010247199999999999984946499999971552200529999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC-
Q ss_conf 99999999879998999999999998613879999999999388429988-8589999999999829977899999849-
Q 004487 462 LKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM- 539 (749)
Q Consensus 462 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~- 539 (749)
+..+++..... +.+...+..+...+...|++++|...++...+. .| +...+..+...+...|++++|.+.++..
T Consensus 223 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 298 (388)
T d1w3ba_ 223 VAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999857775-547999999999999878999999999999984---99989999999999997487999999998654
Q ss_pred -CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf -9999978699999999715998899999999862788899525999989988729901599999999867983478636
Q 004487 540 -PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGVRKVTAYS 618 (749)
Q Consensus 540 -~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s 618 (749)
..+.+...+..+...+...|++++|+..++++++..| .++..+..++.+|...|++++|...+++..+.
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--------- 368 (388)
T d1w3ba_ 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------- 368 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT---------
T ss_pred CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------
T ss_conf 04873001015799999987899999999999998688-98999999999999859999999999999970---------
Q ss_pred EEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99869989899837988969199999999999999
Q 004487 619 WVELKSKVHVFTANDELHPQTNEIRRKIENLMQEM 653 (749)
Q Consensus 619 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m 653 (749)
+|...+.+..+..+..+|
T Consensus 369 -----------------~P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 369 -----------------SPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHT
T ss_pred -----------------CCCCHHHHHHHHHHHHHC
T ss_conf -----------------999899999999999985
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=5.7e-13 Score=97.80 Aligned_cols=120 Identities=12% Similarity=0.064 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 138799999999993884299888589999999999829977899999849-9999-97869999999971599889999
Q 004487 489 HCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKK 566 (749)
Q Consensus 489 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 566 (749)
..+...++...+........-.++...+..+...+...|++++|.+.+++. ...| +...|..+...+...|+.++|..
T Consensus 148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 227 (323)
T d1fcha_ 148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 227 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHH
T ss_conf 76579999999999999713012221110368888888877550021112222222221110133301221111013788
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 9999862788899525999989988729901599999999867
Q 004487 567 AADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.++++++.+| .++..+..++.+|...|++++|...+++..+.
T Consensus 228 ~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 228 AYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 8778998843-24999999999999878999999999999970
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=4.9e-12 Score=91.77 Aligned_cols=145 Identities=11% Similarity=0.039 Sum_probs=93.6
Q ss_pred HCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 4499889999999999879-998999999999998613879999999999388429988858999999999982997789
Q 004487 454 QNGDAQATLKSFEDMVQSG-YQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEA 532 (749)
Q Consensus 454 ~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 532 (749)
..+...++...+.+..... -.++...+..+...+...|++++|...++..... .+-+...+..+...+...|++++|
T Consensus 148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A 225 (323)
T d1fcha_ 148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 225 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCHHHHHHCCCCCCCCHHH
T ss_conf 765799999999999997130122211103688888888775500211122222--222211101333012211110137
Q ss_pred HHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHH-----------HHHHHHHHHCCCCHHH
Q ss_conf 9999849-9999-9786999999997159988999999998627888995259-----------9998998872990159
Q 004487 533 EKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPY-----------VAMSNIYAVAGQWESV 599 (749)
Q Consensus 533 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~a 599 (749)
.+.+++. ...| +..+|..+..+|...|++++|+..+++++++.| .+...+ ..+..++...|+.+.+
T Consensus 226 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 226 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR-KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 8887789988432499999999999987899999999999997097-570011245999999999999999982988999
Q ss_pred HH
Q ss_conf 99
Q 004487 600 SQ 601 (749)
Q Consensus 600 ~~ 601 (749)
..
T Consensus 305 ~~ 306 (323)
T d1fcha_ 305 GA 306 (323)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=2.8e-08 Score=67.40 Aligned_cols=160 Identities=10% Similarity=0.008 Sum_probs=73.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-----HHHHHH
Q ss_conf 999999449988999999999987999----89999999999986138799999999993884299888-----589999
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSGYQ----PDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPK-----KEHYAS 518 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~ 518 (749)
+...+...|+.+.+...+......... ....++......+...+....+...+............ ...+..
T Consensus 139 la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 218 (366)
T d1hz4a_ 139 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 218 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 87899981456666899999888766300246899998888888764667888899999999998731157269999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHC-CCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHC------CCCCCCCHHHHHH
Q ss_conf 999999829977899999849-9999-----978699999999715998899999999862------7888995259999
Q 004487 519 MVDILCRSGCFDEAEKLMAQM-PFEP-----DEIMWSSVINSCRIHKNLEFAKKAADQLFK------MEKLRDAAPYVAM 586 (749)
Q Consensus 519 li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~~l 586 (749)
+...+...|++++|...+++. ...| ....+..+...+...|+.++|...+++++. ..| .....+..+
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l 297 (366)
T d1hz4a_ 219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS-DLNRNLLLL 297 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHH
T ss_conf 9999986044898999999999762246667778899999999875879999999999998876426674-799999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 8998872990159999999986
Q 004487 587 SNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 587 ~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
+.+|...|++++|.+.+++..+
T Consensus 298 a~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 298 NQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999987899999999999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=2.2e-08 Score=68.07 Aligned_cols=182 Identities=9% Similarity=0.064 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--C-C-CCHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 798999999999809997253899999999913999899999840999--9-8-20599999999944998899999999
Q 004487 392 LSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE--R-N-IVSWNALISACAQNGDAQATLKSFED 467 (749)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~~ 467 (749)
.+.+..+++..++...+.+...+...+..+.+.|+.+.|..+|+.+.+ | + ...|...+....+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 59999999999987499879999999999986133899999999999871578699999999999982786889999999
Q ss_pred HHHCCCCCCHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC----CCC
Q ss_conf 998799989999999999-986138799999999993884299888589999999999829977899999849----999
Q 004487 468 MVQSGYQPDSVSLLSVLS-ACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM----PFE 542 (749)
Q Consensus 468 m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~ 542 (749)
+...+. .+...+..... -+...|+.+.|..+|+.+... .+.+...+...++.+.+.|++++|..+|++. +..
T Consensus 160 al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 998088-867999999999987655778999999999986--10038899999999998698689999999999827898
Q ss_pred CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf 99--78699999999715998899999999862788
Q 004487 543 PD--EIMWSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 543 p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
|+ ...|...+.--..+|+.+.+..+.+++.+..|
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 689999999999999984999999999999998771
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=9.5e-08 Score=63.92 Aligned_cols=28 Identities=7% Similarity=-0.143 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 6999999997159988999999998627
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKM 574 (749)
Q Consensus 547 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 574 (749)
.+..+...+...|+.++|...+++.+++
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999999878999999999999997
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=1.3e-08 Score=69.55 Aligned_cols=171 Identities=11% Similarity=0.165 Sum_probs=81.1
Q ss_pred HHHHHHHHHCC-CHHHHHHHHHHCC---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHC
Q ss_conf 99999999139-9989999984099---9982059999999994499889999999999879998-99999999999861
Q 004487 415 SALLDMYAKSG-SLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSH 489 (749)
Q Consensus 415 ~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 489 (749)
+.....+...| ++++|...++... ..+..+|+.+...+...|++++|+..++++.+ ..| +...+..+...+..
T Consensus 81 ~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~ 158 (315)
T d2h6fa1 81 HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQE 158 (315)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHH
T ss_conf 999999998376799999999999988774226898875888850537889988755543--210046889988778888
Q ss_pred CCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCC------HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCC
Q ss_conf 3879999999999388429988-85899999999998299------77899999849-9999-97869999999971599
Q 004487 490 CGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGC------FDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKN 560 (749)
Q Consensus 490 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 560 (749)
.|++++|++.++.+.+. .| +...|..+..++.+.+. +++|.+.+.++ ...| +...|..+...+.. ..
T Consensus 159 ~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~ 234 (315)
T d2h6fa1 159 FKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RG 234 (315)
T ss_dssp HTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CC
T ss_conf 88667899999999987---974499998899999874563102354776799999998498856999998779886-27
Q ss_pred HHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHH
Q ss_conf 889999999986278889-9525999989988
Q 004487 561 LEFAKKAADQLFKMEKLR-DAAPYVAMSNIYA 591 (749)
Q Consensus 561 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 591 (749)
.+++...++.+.++.|.. +...+..++.+|.
T Consensus 235 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 235 LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 18899999999972877578999999999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.05 E-value=2e-07 Score=61.81 Aligned_cols=182 Identities=9% Similarity=0.034 Sum_probs=118.9
Q ss_pred CCHHHHHHHHHHCC----CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99989999984099----99820599999999944998899999999998799989999999999986138799999999
Q 004487 425 GSLKDAIQTFKEMP----ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYF 500 (749)
Q Consensus 425 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 500 (749)
+..++|..+|+... ..+...|...+......|+.+.|..+|+++...........+...+..+.+.|..+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 24599999999999874998799999999999861338999999999998715786999999999999827868899999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99388429988858999999999-9829977899999849--99999786999999997159988999999998627888
Q 004487 501 NSMTQKYKLRPKKEHYASMVDIL-CRSGCFDEAEKLMAQM--PFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKL 577 (749)
Q Consensus 501 ~~m~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 577 (749)
..+... .+.+...|....... ...|+.+.|..+++.+ ....+...|...+......|+.+.|..+|++++...|
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~- 234 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS- 234 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS-
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-
T ss_conf 999980--88867999999999987655778999999999986100388999999999986986899999999998278-
Q ss_pred CCC----HHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 995----25999989988729901599999999867
Q 004487 578 RDA----APYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 578 ~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.++ ..|...+..-...|+.+.+.++.+++.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 986899999999999999849999999999999987
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=5.4e-08 Score=65.49 Aligned_cols=191 Identities=8% Similarity=0.087 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q ss_conf 3899999999913999899999840999---98205999999999449-98899999999998799989-9999999999
Q 004487 412 FSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNG-DAQATLKSFEDMVQSGYQPD-SVSLLSVLSA 486 (749)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 486 (749)
..++.+...+.+.+..++|.+.++.+.+ .+...|+.....+...| ++++|+..+++... ..|+ ..++..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_conf 999999999995886699999999999879887699999999999837679999999999998--877422689887588
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCC---
Q ss_conf 8613879999999999388429988-8589999999999829977899999849-9999-97869999999971599---
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKN--- 560 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~--- 560 (749)
+...|++++|+..+..+.+. .| +...|..+...+...|++++|.+.++++ ...| +...|+.+...+...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~---dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHCCHHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCH
T ss_conf 88505378899887555432---100468899887788888866789999999998797449999889999987456310
Q ss_pred ---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf ---8899999999862788899525999989988729901599999999867
Q 004487 561 ---LEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 561 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.++|...+.++++..| .+...+..+..++...| .+++.+.++...+.
T Consensus 199 ~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_conf 2354776799999998498-85699999877988627-18899999999972
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=3.5e-08 Score=66.74 Aligned_cols=35 Identities=6% Similarity=-0.197 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 699999999715998899999999862788899525
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAP 582 (749)
Q Consensus 547 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 582 (749)
+|..+...+...|+.++|...++++++..| .+...
T Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 245 (259)
T d1xnfa_ 211 TNFYLGKYYLSLGDLDSATALFKLAVANNV-HNFVE 245 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCHHH
T ss_conf 999999999987899999999999998399-77999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.96 E-value=6.1e-09 Score=71.65 Aligned_cols=193 Identities=6% Similarity=-0.096 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 798999999999809997253899999999913999899999840999---98205999999999449988999999999
Q 004487 392 LSLGKQLHSFVIRSGFMSNVFSGSALLDMYAKSGSLKDAIQTFKEMPE---RNIVSWNALISACAQNGDAQATLKSFEDM 468 (749)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 468 (749)
.+.+...+..+..................+...+..+.|...++...+ .+...|+.+...+...|++++|...+...
T Consensus 125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~ 204 (334)
T d1dcea1 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 89999999999855921211110578999874455289999999988718987999999999999826889899988776
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHH
Q ss_conf 98799989999999999986138799999999993884299888589999999999829977899999849-9999-978
Q 004487 469 VQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEI 546 (749)
Q Consensus 469 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 546 (749)
.. +.|+.. .....+...+..+++...+...... -.+....+..+...+...|+..+|.+.+.+. ...| +..
T Consensus 205 ~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 277 (334)
T d1dcea1 205 EN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL 277 (334)
T ss_dssp HH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HH--HHHHHH---HHHHHHHHHCCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 77--689999---9999998824414889999988771--8660567887999999986699999999988762913799
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6999999997159988999999998627888995259999899887
Q 004487 547 MWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAV 592 (749)
Q Consensus 547 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 592 (749)
.|..+...+...|+.++|...++++++++| .+...|..|...+..
T Consensus 278 ~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP-~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 278 TIILLMRALDPLLYEKETLQYFSTLKAVDP-MRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHCTGGGHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
T ss_conf 999999999878999999999999998796-639999999999867
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=1.3e-08 Score=69.43 Aligned_cols=190 Identities=14% Similarity=0.062 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q ss_conf 89999999991399989999984099---99820599999999944998899999999998799989-999999999986
Q 004487 413 SGSALLDMYAKSGSLKDAIQTFKEMP---ERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACS 488 (749)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 488 (749)
++..+...|.+.|++++|...|++.. ..+..+|+.+..++...|++++|+..|+++.. +.|+ ..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_conf 9999999999879999999999985434999889996004278887778875234468999--87611115888999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHC----CCHH
Q ss_conf 13879999999999388429988-8589999999999829977899999849-9999978699999999715----9988
Q 004487 489 HCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPDEIMWSSVINSCRIH----KNLE 562 (749)
Q Consensus 489 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~----g~~~ 562 (749)
..|++++|...++...+. .| +......+...+.+.+..+.+..+.... ...++...+. ++..+... +..+
T Consensus 117 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 876679999999999865---300078889999999885358789999987640314443455-7788888877777899
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 99999999862788899525999989988729901599999999867
Q 004487 563 FAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 563 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.+...+.......| .....+..++.+|...|++++|.+.+++....
T Consensus 193 ~~~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 193 RLKADATDNTSLAE-HLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHCCSHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999998664084-50999999999999878999999999999983
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.79 E-value=4e-08 Score=66.33 Aligned_cols=188 Identities=7% Similarity=-0.070 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHCC---CCCCCHHHHH-HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 8999999999139--9989999984099---9982059999-99999449988999999999987999899999999999
Q 004487 413 SGSALLDMYAKSG--SLKDAIQTFKEMP---ERNIVSWNAL-ISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSA 486 (749)
Q Consensus 413 ~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 486 (749)
.+..+...+...+ +.++|...++.+. .++...|... ...+...+..++|+..+++..... +-+...+..+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~ 187 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHH
T ss_conf 898864899884304289999999999855921211110578999874455289999999988718-9879999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 86138799999999993884299888589999999999829977899999849--9999978699999999715998899
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM--PFEPDEIMWSSVINSCRIHKNLEFA 564 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a 564 (749)
+...|++++|...+...... .|. .......+...+..+++...+... ...++...+..+...+...++.++|
T Consensus 188 ~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99826889899988776776---899---999999998824414889999988771866056788799999998669999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999986278889952599998998872990159999999986
Q 004487 565 KKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
...+.+..+..| .+...+..++.+|...|++++|.+.+++..+
T Consensus 262 ~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 262 CKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999998876291-3799999999999878999999999999998
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=5.2e-06 Score=52.65 Aligned_cols=84 Identities=8% Similarity=0.044 Sum_probs=48.3
Q ss_pred HHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHH
Q ss_conf 9999139998999998409999820599999999944998899999999998799989-999999999986138799999
Q 004487 419 DMYAKSGSLKDAIQTFKEMPERNIVSWNALISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGL 497 (749)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 497 (749)
..+...|+++.|.+.|..+.+++...|..+...|...|++++|++.|++..+ +.|+ ...|..+..++.+.|++++|.
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 9999877999999999864898899999999999985891467878999999--85523466788999998542499999
Q ss_pred HHHHHHH
Q ss_conf 9999938
Q 004487 498 QYFNSMT 504 (749)
Q Consensus 498 ~~~~~m~ 504 (749)
..|+...
T Consensus 91 ~~~~kAl 97 (192)
T d1hh8a_ 91 KDLKEAL 97 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.54 E-value=7.4e-07 Score=58.13 Aligned_cols=100 Identities=7% Similarity=-0.077 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHH
Q ss_conf 89999999999986138799999999993884299888589999999999829977899999849-99999-78699999
Q 004487 475 PDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVI 552 (749)
Q Consensus 475 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 552 (749)
|+...+......+...|++++|+..|...... -+.+...|..+..+|.+.|++++|.+.+++. ...|+ ...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 64999999999999869999999999999985--9998999981789874100000124788888871887389999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf 999715998899999999862788
Q 004487 553 NSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 553 ~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
.++...|++++|...+++++++.|
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 999987999999999999987495
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.48 E-value=7.2e-06 Score=51.69 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=6.5
Q ss_pred CCCHHHHHHHHHHHHCCC
Q ss_conf 599889999999986278
Q 004487 558 HKNLEFAKKAADQLFKME 575 (749)
Q Consensus 558 ~g~~~~a~~~~~~~~~~~ 575 (749)
.++.+.|...+++..+.+
T Consensus 212 ~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 212 ATDAVAAARTLQEGQSED 229 (290)
T ss_dssp TTCHHHHHHHHHGGGCC-
T ss_pred HCCHHHHHHHHHHHHHHC
T ss_conf 465999999999999759
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=6.4e-06 Score=52.02 Aligned_cols=117 Identities=10% Similarity=0.079 Sum_probs=56.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHH
Q ss_conf 86138799999999993884299888589999999999829977899999849-9999-978699999999715998899
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFA 564 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 564 (749)
+...|+++.|++.|..+ .+|+...+..+..++...|++++|++.|++. ...| +...|..+..++...|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99877999999999864-----8988999999999999858914678789999998552346678899999854249999
Q ss_pred HHHHHHHHCCCCCCC----------------CHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 999999862788899----------------525999989988729901599999999867
Q 004487 565 KKAADQLFKMEKLRD----------------AAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 565 ~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
...+++.+...+ .+ ...+..++.+|...|++++|.+.++.....
T Consensus 90 ~~~~~kAl~~~~-~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQLR-GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHTTT-TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999998672-673678998665436305889999999999978999999999999836
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=2.7e-06 Score=54.49 Aligned_cols=97 Identities=7% Similarity=0.052 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 88589999999999829977899999849-9999-978699999999715998899999999862788899525999989
Q 004487 511 PKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSN 588 (749)
Q Consensus 511 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 588 (749)
|+...+......|.+.|++++|++.|++. ...| +...|..+..++...|+++.|+..++++++++| .+..+|..++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_conf 64999999999999869999999999999985999899998178987410000012478888887188-73899999999
Q ss_pred HHHHCCCCHHHHHHHHHHHH
Q ss_conf 98872990159999999986
Q 004487 589 IYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 589 ~~~~~g~~~~a~~~~~~m~~ 608 (749)
+|...|++++|...+++..+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
T ss_conf 99987999999999999987
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=1.2e-05 Score=50.26 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=10.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9999999861387999999999938
Q 004487 480 LLSVLSACSHCGLIEEGLQYFNSMT 504 (749)
Q Consensus 480 ~~~ll~a~~~~g~~~~a~~~~~~m~ 504 (749)
+..+...+...|++++|...++...
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~ 185 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLI 185 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 8999999998173999999999999
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=9e-06 Score=51.08 Aligned_cols=84 Identities=12% Similarity=0.193 Sum_probs=33.8
Q ss_pred HHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99829977899999849-9999-978699999999715998899999999862788899525999989988729901599
Q 004487 523 LCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVS 600 (749)
Q Consensus 523 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 600 (749)
+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++++| .+...|..++.+|...|++++|.
T Consensus 20 ~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~g~~~eA~ 98 (159)
T d1a17a_ 20 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAAL 98 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99958999999986602110001133324567888740542128888999998754-46687799999999949999999
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q 004487 601 QVKKAMR 607 (749)
Q Consensus 601 ~~~~~m~ 607 (749)
..+++..
T Consensus 99 ~~~~~a~ 105 (159)
T d1a17a_ 99 RDYETVV 105 (159)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9899998
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=1.1e-05 Score=50.49 Aligned_cols=88 Identities=9% Similarity=0.131 Sum_probs=49.0
Q ss_pred HHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 99999829977899999849-9999-978699999999715998899999999862788899525999989988729901
Q 004487 520 VDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWE 597 (749)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 597 (749)
...+...|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++| .++..|..++.+|...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCHH
T ss_conf 99999969999999999998861996013430001101100001121001346777402-20267788999999812799
Q ss_pred HHHHHHHHHHH
Q ss_conf 59999999986
Q 004487 598 SVSQVKKAMRE 608 (749)
Q Consensus 598 ~a~~~~~~m~~ 608 (749)
+|...++...+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=6.3e-05 Score=45.57 Aligned_cols=78 Identities=9% Similarity=0.051 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 999999999829977899999849-9999-97869999999971599889999999986278889952599998998872
Q 004487 516 YASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVA 593 (749)
Q Consensus 516 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 593 (749)
|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++| .|......+..+....
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHH
T ss_conf 999999988642110110000000100223103467779999872229999999999997298-9899999999999999
Q ss_pred C
Q ss_conf 9
Q 004487 594 G 594 (749)
Q Consensus 594 g 594 (749)
+
T Consensus 144 ~ 144 (170)
T d1p5qa1 144 R 144 (170)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=3.2e-05 Score=47.52 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=77.8
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCC
Q ss_conf 999986138799999999993884299888589999999999829977899999849-9999-97869999999971599
Q 004487 483 VLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKN 560 (749)
Q Consensus 483 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 560 (749)
-...+...|++++|...|...... -+.+...|..+..++...|++++|+..+++. ...| +...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999969999999999998861--996013430001101100001121001346777402202677889999998127
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 8899999999862788899525999989988
Q 004487 561 LEFAKKAADQLFKMEKLRDAAPYVAMSNIYA 591 (749)
Q Consensus 561 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (749)
+++|+..+++.++.+| .++..+..+.++..
T Consensus 87 ~~~A~~~~~~a~~~~p-~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEA-NNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHC
T ss_conf 9999999999998498-98999999997838
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=4.5e-05 Score=46.56 Aligned_cols=115 Identities=9% Similarity=0.057 Sum_probs=72.3
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCH
Q ss_conf 99986138799999999993884299888589999999999829977899999849-9999-978699999999715998
Q 004487 484 LSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNL 561 (749)
Q Consensus 484 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 561 (749)
...|.+.|++++|...|+...+. -+.+...|..+..++...|++++|.+.++++ ...| +...|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf 99999958999999986602110--0011333245678887405421288889999987544668779999999994999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHH--HCCCCHHHHH
Q ss_conf 899999999862788899525999989988--7299015999
Q 004487 562 EFAKKAADQLFKMEKLRDAAPYVAMSNIYA--VAGQWESVSQ 601 (749)
Q Consensus 562 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~ 601 (749)
++|...+++++.+.| .+...+..+..+.. ..+.++++..
T Consensus 95 ~eA~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 95 RAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998999987299-97999999999999999898999975
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=6.1e-05 Score=45.68 Aligned_cols=63 Identities=3% Similarity=-0.013 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 8699999999715998899999999862788899525999989988729901599999999867
Q 004487 546 IMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.+|..+..+|...|++++|+..++++++++| .++..+..++.+|...|++++|...++...+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998864211011000000010022-31034677799998722299999999999972
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.07 E-value=0.00016 Score=43.01 Aligned_cols=63 Identities=11% Similarity=0.050 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 8699999999715998899999999862788899525999989988729901599999999867
Q 004487 546 IMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.++..+...+...|++++|+..++++++.+| .+..+|..++.+|...|++++|...++...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9996199999984653011101000100000-00124677689999968999999999999982
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.96 E-value=0.00037 Score=40.56 Aligned_cols=78 Identities=9% Similarity=0.068 Sum_probs=37.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 999999999829977899999849-9999-97869999999971599889999999986278889952599998998872
Q 004487 516 YASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVA 593 (749)
Q Consensus 516 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 593 (749)
|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++| .+......+..+....
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHH
T ss_conf 984999987762201100022322201310488999889999882789999999999998598-9899999999999999
Q ss_pred C
Q ss_conf 9
Q 004487 594 G 594 (749)
Q Consensus 594 g 594 (749)
+
T Consensus 146 ~ 146 (168)
T d1kt1a1 146 K 146 (168)
T ss_dssp H
T ss_pred H
T ss_conf 8
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.96 E-value=1.7e-05 Score=49.30 Aligned_cols=88 Identities=15% Similarity=0.053 Sum_probs=75.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999999829977899999849-9999-9786999999997159988999999998627888995259999899887299
Q 004487 518 SMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ 595 (749)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (749)
.+...+.+.|++++|...+++. ...| +...|..+...+...|+.++|+..++++++++| .+...+..++.+|...|+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHHHHHCCC
T ss_conf 9999999876058999988610112111100123354564101258774100000111111-000003789999999789
Q ss_pred CHHHHHHHHHH
Q ss_conf 01599999999
Q 004487 596 WESVSQVKKAM 606 (749)
Q Consensus 596 ~~~a~~~~~~m 606 (749)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=0.00015 Score=43.13 Aligned_cols=62 Identities=5% Similarity=-0.040 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 869999999971599889999999986278889952599998998872990159999999986
Q 004487 546 IMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
..|..+...+...|++++|+..++++++++| .++..|..++.+|...|++++|...+++..+
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999899999864021013666554431000-2236777699999980479999999999998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.92 E-value=0.0003 Score=41.19 Aligned_cols=63 Identities=8% Similarity=0.049 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 8699999999715998899999999862788899525999989988729901599999999867
Q 004487 546 IMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
.++..+..++...|++++|+..++++++++| .+...|..++.+|...|++++|...++.+.+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9998499998776220110002232220131-04889998899998827899999999999985
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=6.9e-05 Score=45.32 Aligned_cols=105 Identities=16% Similarity=0.009 Sum_probs=52.6
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHC-CCCCCH---HHHHHHHHH
Q ss_conf 999998613879999999999388429988858999999999982997---7899999849-999997---869999999
Q 004487 482 SVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCF---DEAEKLMAQM-PFEPDE---IMWSSVINS 554 (749)
Q Consensus 482 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~l~~~ 554 (749)
.+++.+...+++++|.+.|+..... -+.+..++..+..++.+.++. ++|++++++. ...|+. .+|..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 7988736999999999999998832--99989999999999998512678999999999998606993199999999999
Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 97159988999999998627888995259999899
Q 004487 555 CRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNI 589 (749)
Q Consensus 555 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 589 (749)
|...|++++|+..++++++++| .+......+..+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P-~~~~A~~l~~~I 115 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEP-QNNQAKELERLI 115 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_conf 9997316999999999997690-989999999999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=3e-06 Score=54.20 Aligned_cols=69 Identities=10% Similarity=0.098 Sum_probs=32.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCC---CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 8999999943997899999972588---993319999999996899469999999998879886897699999
Q 004487 314 NSLVDMYAKCGRFEEAKEIFANLSH---ISTVPWTAMISAYVQKGNLEEALNLFIEMCRANISADQATFASIL 383 (749)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 383 (749)
..+.+.+...++++.|...|....+ .+..+|+.+...+...|+..+|+..|.+..... .|-..++..+.
T Consensus 156 ~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~ 227 (497)
T d1ya0a1 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ 227 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHH
T ss_conf 9999999980247899999999998789965999999999998699999999999998179-99789999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.82 E-value=0.00029 Score=41.33 Aligned_cols=85 Identities=7% Similarity=-0.026 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 8589999999999829977899999849-9999-9786999999997159988999999998627888995259999899
Q 004487 512 KKEHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNI 589 (749)
Q Consensus 512 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 589 (749)
....+..+..++.+.|++++|+..+++. ...| +...|..+..++...|+++.|+..++++++++| .+......+..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~~~ 154 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_conf 3999998999998640210136665544310002236777699999980479999999999998598-999999999999
Q ss_pred HHHCCCCH
Q ss_conf 88729901
Q 004487 590 YAVAGQWE 597 (749)
Q Consensus 590 ~~~~g~~~ 597 (749)
+.......
T Consensus 155 ~~~l~~~~ 162 (169)
T d1ihga1 155 KQKIKAQK 162 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999899
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=8.2e-05 Score=44.84 Aligned_cols=93 Identities=5% Similarity=-0.050 Sum_probs=64.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHH
Q ss_conf 99999999829977899999849-9999-9786999999997159---98899999999862788899-52599998998
Q 004487 517 ASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHK---NLEFAKKAADQLFKMEKLRD-AAPYVAMSNIY 590 (749)
Q Consensus 517 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 590 (749)
..++..+...+++++|++.|++. ...| +..++..+..++...+ +.++|+.++++++..+|.++ ...+..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 77988736999999999999998832999899999999999985126789999999999986069931999999999999
Q ss_pred HHCCCCHHHHHHHHHHHHC
Q ss_conf 8729901599999999867
Q 004487 591 AVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 591 ~~~g~~~~a~~~~~~m~~~ 609 (749)
...|++++|.+.++++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9973169999999999976
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=0.0003 Score=41.23 Aligned_cols=89 Identities=9% Similarity=0.153 Sum_probs=45.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCH-------HHHHHHH
Q ss_conf 9999999829977899999849-9999-97869999999971599889999999986278889952-------5999989
Q 004487 518 SMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAA-------PYVAMSN 588 (749)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~ 588 (749)
.+...+.+.|++++|.+.|++. ...| +...|..+..++...|+++.|+..++++++++| .+.. +|..++.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~-~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-ENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHH
T ss_conf 9999999859999999999999884964589998688999881860778999999998680-127889889999999999
Q ss_pred HHHHCCCCHHHHHHHHHHH
Q ss_conf 9887299015999999998
Q 004487 589 IYAVAGQWESVSQVKKAMR 607 (749)
Q Consensus 589 ~~~~~g~~~~a~~~~~~m~ 607 (749)
.+...+++++|.+.+++..
T Consensus 88 ~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHH
T ss_conf 9999388999999999998
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.69 E-value=0.00043 Score=40.20 Aligned_cols=77 Identities=6% Similarity=-0.056 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 89999999999829977899999849-9999-978699999999715998899999999862788899525999989988
Q 004487 514 EHYASMVDILCRSGCFDEAEKLMAQM-PFEP-DEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYA 591 (749)
Q Consensus 514 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (749)
..|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++.|...+++.++++| .|......+..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
T ss_conf 99961999999846530111010001000000012467768999996899999999999998298-98999999999999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.57 E-value=0.00068 Score=38.86 Aligned_cols=60 Identities=3% Similarity=-0.029 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 8699999999715998899999999862788899525999989988729901599999999
Q 004487 546 IMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAM 606 (749)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 606 (749)
..+..+...+...|++++|...++++++.+| .+...|..++.+|...|++.+|.+.++++
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 9999999999887990578999999998498-51999999999999855799999999999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.45 E-value=0.0025 Score=35.20 Aligned_cols=25 Identities=4% Similarity=0.092 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8999999999982997789999984
Q 004487 514 EHYASMVDILCRSGCFDEAEKLMAQ 538 (749)
Q Consensus 514 ~~~~~li~~~~~~g~~~~A~~~~~~ 538 (749)
...+++.+.|...++++.-.+.++.
T Consensus 281 ~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 281 SVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999998671246789999987
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.00024 Score=41.83 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 1368889999999439978999999725
Q 004487 309 EVKVANSLVDMYAKCGRFEEAKEIFANL 336 (749)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 336 (749)
+...++.|...|...|+..+|...|.+.
T Consensus 185 ~~~~~~~Lg~~~~~~~~~~~A~~~y~ra 212 (497)
T d1ya0a1 185 NGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp BSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 6599999999999869999999999999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.42 E-value=0.0027 Score=35.02 Aligned_cols=80 Identities=11% Similarity=-0.049 Sum_probs=42.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH----CCCCHHHH
Q ss_conf 77899999849999997869999999971----59988999999998627888995259999899887----29901599
Q 004487 529 FDEAEKLMAQMPFEPDEIMWSSVINSCRI----HKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAV----AGQWESVS 600 (749)
Q Consensus 529 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 600 (749)
...+...++...-..+......+...+.. ..|.+.|+..+++..+.+ ++..+..|+.+|.. ..+.++|.
T Consensus 162 ~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~ 238 (265)
T d1ouva_ 162 LKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAI 238 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHH
T ss_pred CCCCHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCC---CHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 220001221132322223322113121267654310344454676653036---89999999999983999761899999
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999986798
Q 004487 601 QVKKAMRERGV 611 (749)
Q Consensus 601 ~~~~~m~~~g~ 611 (749)
+.+++..+.|.
T Consensus 239 ~~~~kAa~~g~ 249 (265)
T d1ouva_ 239 ENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHCCC
T ss_conf 99999998769
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.29 E-value=0.0013 Score=37.06 Aligned_cols=86 Identities=10% Similarity=-0.021 Sum_probs=42.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH
Q ss_conf 99999944998899999999998799989-99999999998613879999999999388429988-85899999999998
Q 004487 448 LISACAQNGDAQATLKSFEDMVQSGYQPD-SVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRP-KKEHYASMVDILCR 525 (749)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 525 (749)
+...+.+.|++++|+..|++.... .|+ ..++..+..++...|++++|...++...+. .| +...+..+...|..
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCCHHHHHHHHHH
T ss_conf 999999876058999988610112--1111001233545641012587741000001111---11000003789999999
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 2997789999984
Q 004487 526 SGCFDEAEKLMAQ 538 (749)
Q Consensus 526 ~g~~~~A~~~~~~ 538 (749)
.|++++|.+.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 7899999999999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.20 E-value=0.0039 Score=33.97 Aligned_cols=26 Identities=12% Similarity=-0.083 Sum_probs=12.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99998998872990159999999986
Q 004487 583 YVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 583 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
+..++.+|...|++++|...+++..+
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75269999988888888999999998
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.0048 Score=33.40 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=30.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9999999449988999999999987999899999999999861387999999999938
Q 004487 447 ALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMT 504 (749)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 504 (749)
.+...+.+.|++++|+..|.+.++.. +.+...+..+..+|...|++++|...++.+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999998599999999999998849-6458999868899988186077899999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.13 E-value=0.0022 Score=35.60 Aligned_cols=125 Identities=12% Similarity=0.060 Sum_probs=73.1
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHCCCH
Q ss_conf 994499889999999999879998-99999999999861387999999999938842998885-8999999999982997
Q 004487 452 CAQNGDAQATLKSFEDMVQSGYQP-DSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKK-EHYASMVDILCRSGCF 529 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~ 529 (749)
..+.|++++|+..+++..+. .| |...+..+...++..|++++|...++...+. .|+. ..+..+..++...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCC
T ss_conf 98888999999999999997--8999999999999999879999999999999986---997389999999999834663
Q ss_pred HHHHHHHHHC--CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 7899999849--99999-78699999999715998899999999862788899525
Q 004487 530 DEAEKLMAQM--PFEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAP 582 (749)
Q Consensus 530 ~~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 582 (749)
+++..-.... ...|+ ...+......+...|+.++|...++++.+..| ..+..
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p-~~~~~ 135 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ-EKGFL 135 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCCEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCCCC
T ss_conf 78998754442035864799999999999967998999999999983399-99810
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.08 E-value=0.00053 Score=39.58 Aligned_cols=122 Identities=15% Similarity=0.181 Sum_probs=85.7
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHHH
Q ss_conf 86138799999999993884299888589999999999829977899999849-99999-78699999999715998899
Q 004487 487 CSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDEAEKLMAQM-PFEPD-EIMWSSVINSCRIHKNLEFA 564 (749)
Q Consensus 487 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a 564 (749)
....|++++|+..++...+. -+.+...+..+..+|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 98888999999999999997--8999999999999999879999999999999986997389999999999834663789
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 9999998627888995259999899887299015999999998679
Q 004487 565 KKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERG 610 (749)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 610 (749)
...........+.++...+...+..+...|+.++|...+..+.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 9875444203586479999999999996799899999999998339
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.92 E-value=0.00097 Score=37.88 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 9889999999986278889952599998998872990159999999986798
Q 004487 560 NLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 560 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
+++.|...|+++++++| .+...+..|... .++.++..+..++|+
T Consensus 101 ~~~~A~~~~~kal~l~P-~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQP-DNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHHHHHCT-TCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHCCCCCCC-CHHHHHHHHHHH-------HHHHHHHHHHHHHHC
T ss_conf 67876312110002598-889999999999-------997978999998735
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.76 E-value=0.0015 Score=36.59 Aligned_cols=49 Identities=8% Similarity=0.144 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC-----------CHHHHHHHHHHHH
Q ss_conf 9988999999998627888995259999899887299-----------0159999999986
Q 004487 559 KNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQ-----------WESVSQVKKAMRE 608 (749)
Q Consensus 559 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~ 608 (749)
+.+++|+..++++++++| .+..+|..++.+|...|+ +++|.+.+++..+
T Consensus 55 ~~~~~Ai~~~~kAl~l~P-~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 878889999999887301-205877668999987010113578898867876312110002
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.0086 Score=31.74 Aligned_cols=75 Identities=11% Similarity=0.067 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHC----C----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 89999999999829977899999849----9----9999-7869999999971599889999999986278889952599
Q 004487 514 EHYASMVDILCRSGCFDEAEKLMAQM----P----FEPD-EIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYV 584 (749)
Q Consensus 514 ~~~~~li~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 584 (749)
+.+-.+...+.+.|++++|.+.+++. + ..++ ..++..|..++.+.|++++|+..++++++++| .++.++.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P-~~~~a~~ 84 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP-EHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHH
T ss_conf 999999999999779999999999999988653014764789999872688865773988878877988692-9799999
Q ss_pred HHHHH
Q ss_conf 99899
Q 004487 585 AMSNI 589 (749)
Q Consensus 585 ~l~~~ 589 (749)
.+...
T Consensus 85 Nl~~~ 89 (95)
T d1tjca_ 85 NLKYF 89 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.53 E-value=0.016 Score=29.93 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HCCCCCCHHH
Q ss_conf 59999999994499889999999999879998999999999998613879999999999388----4299888589
Q 004487 444 SWNALISACAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQ----KYKLRPKKEH 515 (749)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 515 (749)
.+..+...+...|++++|+..++++.... +-+...+..++.++...|+..+|++.|+.+.. ..|+.|...+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999988799057899999999849-8519999999999998557999999999999998998489968999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=96.19 E-value=0.025 Score=28.70 Aligned_cols=17 Identities=18% Similarity=0.005 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHCCCC
Q ss_conf 98899999999862788
Q 004487 560 NLEFAKKAADQLFKMEK 576 (749)
Q Consensus 560 ~~~~a~~~~~~~~~~~~ 576 (749)
|.+.|...+++..+.+.
T Consensus 233 n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 233 NEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CSTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCCC
T ss_conf 89999999999998769
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.15 E-value=0.026 Score=28.58 Aligned_cols=29 Identities=10% Similarity=-0.207 Sum_probs=13.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999999715998899999999862788
Q 004487 548 WSSVINSCRIHKNLEFAKKAADQLFKMEK 576 (749)
Q Consensus 548 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 576 (749)
+..+..++...|+.++|...+++++++.|
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75269999988888888999999998668
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.028 Score=28.35 Aligned_cols=58 Identities=9% Similarity=0.021 Sum_probs=25.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCCC-------CHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999715998899999999862788899-------52599998998872990159999999986
Q 004487 550 SVINSCRIHKNLEFAKKAADQLFKMEKLRD-------AAPYVAMSNIYAVAGQWESVSQVKKAMRE 608 (749)
Q Consensus 550 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 608 (749)
.+...+...|+++.|+..++++++..| .+ ..++..|+.+|.+.|++++|...++++.+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~-~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLD-EGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-TTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999997799999999999999886-53014764789999872688865773988878877988
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.96 E-value=0.48 Score=20.40 Aligned_cols=66 Identities=6% Similarity=-0.037 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 9978699999999715---998899999999862788899-525999989988729901599999999867
Q 004487 543 PDEIMWSSVINSCRIH---KNLEFAKKAADQLFKMEKLRD-AAPYVAMSNIYAVAGQWESVSQVKKAMRER 609 (749)
Q Consensus 543 p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 609 (749)
|...+.-....+..++ .+.++|+.+++.++..+| .+ ...+..|+-+|.+.|++++|.+.++.+.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8810199999999827968899999999999985495-059999999999999873299999999999823
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=85.52 E-value=0.64 Score=19.56 Aligned_cols=141 Identities=11% Similarity=0.076 Sum_probs=87.7
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99449988999999999987999899999999999861387999999999938842998885899999999998299778
Q 004487 452 CAQNGDAQATLKSFEDMVQSGYQPDSVSLLSVLSACSHCGLIEEGLQYFNSMTQKYKLRPKKEHYASMVDILCRSGCFDE 531 (749)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 531 (749)
+...|..++..++..+...+ .+..-++.++.-....-+-+...++++.+-+-+.+.|-. ....++..+.+.+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHCCC---CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHH-CHHHHHHHHHHHCC---
T ss_conf 98742488679999998466---775512445452430002689999999876340852432-67899999988362---
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999849999997869999999971599889999999986278889952599998998872990159999999986798
Q 004487 532 AEKLMAQMPFEPDEIMWSSVINSCRIHKNLEFAKKAADQLFKMEKLRDAAPYVAMSNIYAVAGQWESVSQVKKAMRERGV 611 (749)
Q Consensus 532 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 611 (749)
+..-....+....++|.-+.-..+++.+++.+. .++....-++++|.+.|...++.+++.+.-++|+
T Consensus 85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~-i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNE-VSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ------------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf ------------189999999999982608789999999875379-9879999999999885224448999999999759
Q ss_pred C
Q ss_conf 3
Q 004487 612 R 612 (749)
Q Consensus 612 ~ 612 (749)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
T ss_conf 9
|