Citrus Sinensis ID: 004491

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------75
MADKIPRVFCIGTADTKLEELQFLSGSVRSNLATFSNNSSSKVDVVVVDVSVSGKETENVGDFKFVKRKAVLSCLPESNGKIPDELDDDRGKAISFMSKALENFLQIAIEDQVLAGVIGLGGSGGTSLISSAFKSLPIGLPKVIVSTVASGQTEPYIGTSDLILIPSVVDVCGINSVSRVVFANAGAAFAGMVVGRLERLRDFGASKEKCTVGITMFGVTTPCVNAVKERLEKEGYETMVFHATGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIHVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADALVDSFLEISGKNLMAFSSAHHVSCERHEDSVSNIYSSSHGTICYSPSNFPDARPETLQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQYKSISIK
ccccccEEEEEEccccHHHHHHHHHHHHHccccccccccccccEEEEEEccccccccccccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHcccccccEEEEcccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHccccEEEEEccHHHHHHHHHcccccccccccHHHHHccccEEEEcccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccHHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEcccccccccccHHHHcHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHccccEEEEEccccccccccccccccccccccHHHHHHHHHHHccccccccEEEEEEcccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccEEEccHHHHHHHHHccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHHHccccc
ccccccEEEEEEEccccHHHHHHHHHHHHHccccEEEEEcccEEEEEEEEcccccccccccccccccccHHHHHHHccccccEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHHccccccEEEEEEEccccccccccHcHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccEEEEEccccccHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHcccEEEEEEEcHHHHHHHHHcccccccHHHHHHHHHccccEEEEcccHHcccccccccccHHHcccEEEEccccEEEEcccHHHHHHHHHHHHHHHHHccccEEEEEccccEEEEcccccccccHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHcccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHccccEEEcccccccccHHHHccccEEEEEEccccEEEcccccHHcccccccHHHHHHHHHHHHcHHcccccEEEEEccccHHHHHHHHHHHHHHcccccccccccEEEEcccHHHHHHHccccccHHHHHHHHHHHcccccccccccHHHHHHHHHccccEEEEEcccccccccccHHHccHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHcccccEEEccccHHHccHHHHHHHHHHHHHHcccc
madkiprvfcigTADTKLEELQFLSGsvrsnlatfsnnssskVDVVVVDVSVsgketenvgdfkfVKRKAVlsclpesngkipdeldddRGKAISFMSKALENFLQIAIEDQVLAGVIglggsggtsLISSAFkslpiglpkVIVSTVasgqtepyigtsdlilipsvvdvcginSVSRVVFANAGAAFAGMVVGRLERLrdfgaskekctVGITMFGVTTPCVNAVKERLEKEGYETMVFHATGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVmacdssrfdatiekkiPLVLSVgaldmvnfgakdtipskfqrrkIHVHNQQVSLMRTTVDENKKFAAFIANKLNqssskirlclpqngisaldapgkpfydpeatGTLISELRTLIqtnedrqvkvyphnindseFADALVDSFLEISGKNlmafssahhvscerhedsvsniyssshgticyspsnfpdarpeTLQRTQAILSKLKYQidkglpiigagagtgisakfeeagGVDLIVLYnsgrfrmagrgslagllpfADANAVVLEMANEVlpvvkevpvlagvcgtdpfrRVDYFLKQLESigffgvqnfptvglfdgnfrqnleetgmgyglEVEMIDKAHkmgllttpyafnegEAVKMAKAGADIIVAHMglttsgsigaktalsLDESVDRVQAIADAAhrinpdaivlchggpisspseAEFILKRTKgvhgfygassmerlpVEQAITSTMRQYKSISIK
MADKIPRVFCIGTADTKLEELQFLSGSVRSNLatfsnnssskvdVVVVDVSVsgketenvgdfkfvkrkavlsclpesngkipdeldDDRGKAISFMSKALENFLQIAIEDQVLAGVIGLGGSGGTSLISSAFKSLPIGLPKVIVSTVASGQTEPYIGTSDLILIPSVVDVCGINSVSRVVFANAGAAFAGMVVGRLERLRDFGASkekctvgitmfgvttpCVNAVKERLEKEGYETMVFHATGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDtipskfqrrkihVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADALVDSFLEISGKNLMAFSSAHHVSCERHEDSVSNIYSSSHGTICYSPSNFPDARPETLQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFygassmerlpveqaitstmrqyksisik
MADKIPRVFCIGTADTKLEELQFLSGSVRSNLATFsnnssskvdvvvvdvsvsGKETENVGDFKFVKRKAVLSCLPESNGKIPDELDDDRGKAISFMSKALENFLQIAIEDQvlagviglggsggtslissaFKSLPIGLPKVIVSTVASGQTEPYIGTSDLILIPSVVDVCGINSVSRvvfanagaafagmvvgRLERLRDFGASKEKCTVGITMFGVTTPCVNAVKERLEKEGYETMVFHATGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIHVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADALVDSFLEISGKNLMAFSSAHHVSCERHEDSVSNIYSSSHGTICYSPSNFPDARPETLQRTQAILSKLKYQIDKGLPiigagagtgisaKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANevlpvvkevpvlAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQYKSISIK
*****PRVFCIGTADTKLEELQFLSGSVRSNLATF******KVDVVVVDVSVSGKETENVGDFKFVKRKAVLSCLP****************AISFMSKALENFLQIAIEDQVLAGVIGLGGSGGTSLISSAFKSLPIGLPKVIVSTVASGQTEPYIGTSDLILIPSVVDVCGINSVSRVVFANAGAAFAGMVVGRLERLRDFGASKEKCTVGITMFGVTTPCVNAVKERLEKEGYETMVFHATGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIHVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADALVDSFLEISGKNLMAFSSAHHVSCER****VSNIYSSSHGTICYS************QRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGA*************************
****IPR*FCIGTADTKLEELQFLSGSVRSNLATFSNNSSSKVDVVVVDVSVSGKETENVGDFKFVKRKAVLSCLPE***************AISFMSKALENFLQIAIEDQVLAGVIGLGGSGGTSLISSAFKSLPIGLPKVIVSTVASGQTEPYIGTSDLILIPSVVDVCGINSVSRVVFANAGAAFAGMVVG***************TVGITMFGVTTPCVNAVKERLEKEGYETMVFHATGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIHVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADALVDSFLEIS*********************************CYS*S**************AILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQYKSISI*
MADKIPRVFCIGTADTKLEELQFLSGSVRSNLATFSNNSSSKVDVVVVDVSVSGKETENVGDFKFVKRKAVLSCLPESNGKIPDELDDDRGKAISFMSKALENFLQIAIEDQVLAGVIGLGGSGGTSLISSAFKSLPIGLPKVIVSTVASGQTEPYIGTSDLILIPSVVDVCGINSVSRVVFANAGAAFAGMVVGRLERLRDFGASKEKCTVGITMFGVTTPCVNAVKERLEKEGYETMVFHATGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIHVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADALVDSFLEISGKNLMAFSS*************SNIYSSSHGTICYSPSNFPDARPETLQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQYKSISIK
***KIPRVFCIGTADTKLEELQFLSGSVRSNLATFSNNSSSKVDVVVVDVSVSG******GDFKFVKRKAVLSCLPESNGKIPDELDDDRGKAISFMSKALENFLQIAIEDQVLAGVIGLGGSGGTSLISSAFKSLPIGLPKVIVSTVASGQTEPYIGTSDLILIPSVVDVCGINSVSRVVFANAGAAFAGMVVGRLERLRDFGASKEKCTVGITMFGVTTPCVNAVKERLEKEGYETMVFHATGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIHVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADALVDSFLEISGKNLM*********************SSSHGTICYSPSNFPDARPETLQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQYKSIS**
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MADKIPRVFCIGTADTKLEELQFLSGSVRSNLATFSNNSSSKVDVVVVDVSVSGKETENVGDFKFVKRKAVLSCLPESNGKIPDELDDDRGKAISFMSKALENFLQIAIEDQVLAGVIGLGGSGGTSLISSAFKSLPIGLPKVIVSTVASGQTEPYIGTSDLILIPSVVDVCGINSVSRVVFANAGAAFAGMVVGRLERLRDFGASKEKCTVGITMFGVTTPCVNAVKERLEKEGYETMVFHATGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRKIHVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADALVDSFLEISGKNLMAFSSAHHVSCERHEDSVSNIYSSSHGTICYSPSNFPDARPETLQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQYKSISIK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query749 2.2.26 [Sep-21-2011]
A4FLF6411 UPF0261 protein SACE_5696 yes no 0.524 0.956 0.464 1e-98
P55607285 Uncharacterized protein y yes no 0.359 0.943 0.609 1e-90
P55606402 UPF0261 protein y4oU OS=R no no 0.526 0.980 0.447 1e-87
Q8ZAG3405 UPF0261 protein YPO3839/y no no 0.528 0.977 0.424 6e-87
Q7W9E3402 UPF0261 protein BPP1817 O no no 0.527 0.982 0.429 1e-85
Q7WHB9402 UPF0261 protein BB3289 OS no no 0.527 0.982 0.429 2e-85
Q981G1402 UPF0261 protein mll9388 O no no 0.526 0.980 0.435 2e-84
Q7VYV4402 UPF0261 protein BP1203 OS no no 0.527 0.982 0.425 6e-84
A8GL43409 UPF0261 protein Spro_4740 yes no 0.528 0.968 0.410 6e-80
Q92YY3398 UPF0261 protein RA0729 OS no no 0.518 0.974 0.423 1e-75
>sp|A4FLF6|Y5696_SACEN UPF0261 protein SACE_5696 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=SACE_5696 PE=3 SV=1 Back     alignment and function desciption
 Score =  361 bits (926), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 197/424 (46%), Positives = 263/424 (62%), Gaps = 31/424 (7%)

Query: 9   FCIGTADTKLEELQFLSGSVRSNLATFSNNSSSKVDVVVVDVSVSGKETENVGDFKFVKR 68
           + +GT DTK  EL +++G V          ++  V VV VDVS SG ET          R
Sbjct: 5   YVVGTFDTKGAELGYVAGLV----------AARGVPVVTVDVSTSGPETGTAD-----AR 49

Query: 69  KAVLSCLPESNGKIPDE----LDDDRGKAISFMSKALENFLQIAIEDQVLAGVIGLGGSG 124
            A +  + E  G  PD        DRG A++ M+ ALE FL      + + GVI LGGSG
Sbjct: 50  PADVGNV-EVAGHHPDGAAAVFTGDRGTAVTAMAVALERFLA----GRAVGGVIALGGSG 104

Query: 125 GTSLISSAFKSLPIGLPKVIVSTVASGQTEPYIGTSDLILIPSVVDVCGINSVSRVVFAN 184
           GT+L + A ++LP+G+PKV+VSTVASG    Y+  +D+ + PSV DV G+N +SR V  N
Sbjct: 105 GTALCTPAMRALPVGVPKVMVSTVASGDVSSYVDATDIAMFPSVTDVAGLNRISRRVLGN 164

Query: 185 AGAAFAGMVVGRLERLRDFGASKEKCTVGITMFGVTTPCVNAVKERLEKEGYETMVFHAT 244
           A  A AG + G      D  ++++K  V +TMFGVTTPCV  V  RLE   Y+ +VFHAT
Sbjct: 165 AAHALAGAMTG------DIASTEDKPAVALTMFGVTTPCVTEVASRLEAR-YDPLVFHAT 217

Query: 245 GVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGAL 304
           G GGRAME LV +G I  VLD+TTTEV D V GGVM+    R DA     +P V S GAL
Sbjct: 218 GTGGRAMEKLVDDGLIGAVLDLTTTEVCDLVAGGVMSAGEGRLDAIARTGVPYVGSCGAL 277

Query: 305 DMVNFGAKDTIPSKFQRRKIHVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCLP 364
           DMVNFGA +T+P +++ R ++VHN QV+LMRTT DE ++  +FIA KLN     +R  LP
Sbjct: 278 DMVNFGAFETVPERYRDRNLYVHNPQVTLMRTTPDECREIGSFIAAKLNACRGPVRFLLP 337

Query: 365 QNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADALVDSFL 424
           + G+S LDAPG+PF+DP+A G L   L + ++ + DR++   PHNIND  FADA++ +F 
Sbjct: 338 EGGVSLLDAPGQPFHDPDADGVLFEVLESELRQDGDRRIVRVPHNINDPAFADAVLTAFE 397

Query: 425 EISG 428
           E+ G
Sbjct: 398 EVLG 401

Saccharopolyspora erythraea (strain NRRL 23338) (taxid: 405948)
>sp|P55607|Y4OV_RHISN Uncharacterized protein y4oV OS=Rhizobium sp. (strain NGR234) GN=NGR_a02140 PE=4 SV=1 Back     alignment and function description
>sp|P55606|Y4OU_RHISN UPF0261 protein y4oU OS=Rhizobium sp. (strain NGR234) GN=NGR_a02150 PE=3 SV=1 Back     alignment and function description
>sp|Q8ZAG3|Y3839_YERPE UPF0261 protein YPO3839/y0391/YP_3209 OS=Yersinia pestis GN=YPO3839 PE=3 SV=1 Back     alignment and function description
>sp|Q7W9E3|Y1817_BORPA UPF0261 protein BPP1817 OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=BPP1817 PE=3 SV=1 Back     alignment and function description
>sp|Q7WHB9|Y3289_BORBR UPF0261 protein BB3289 OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=BB3289 PE=3 SV=1 Back     alignment and function description
>sp|Q981G1|Y9388_RHILO UPF0261 protein mll9388 OS=Rhizobium loti (strain MAFF303099) GN=mll9388 PE=3 SV=2 Back     alignment and function description
>sp|Q7VYV4|Y1203_BORPE UPF0261 protein BP1203 OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=BP1203 PE=3 SV=1 Back     alignment and function description
>sp|A8GL43|Y4740_SERP5 UPF0261 protein Spro_4740 OS=Serratia proteamaculans (strain 568) GN=Spro_4740 PE=3 SV=1 Back     alignment and function description
>sp|Q92YY3|Y4129_RHIME UPF0261 protein RA0729 OS=Rhizobium meliloti (strain 1021) GN=RA0729 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query749
297735101756 unnamed protein product [Vitis vinifera] 0.991 0.982 0.775 0.0
449464548754 PREDICTED: UPF0261 protein SACE_5696-lik 0.989 0.982 0.748 0.0
449520847754 PREDICTED: UPF0261 protein SACE_5696-lik 0.989 0.982 0.746 0.0
410610534754 Tm-1 protein [Solanum habrochaites] gi|4 0.978 0.972 0.745 0.0
410610600754 Tm-1 protein [Solanum habrochaites] 0.978 0.972 0.743 0.0
410610540754 Tm-1 protein [Solanum habrochaites] gi|4 0.978 0.972 0.743 0.0
407728547754 Tm-1 protein [Solanum habrochaites] gi|4 0.978 0.972 0.743 0.0
410610596754 Tm-1 protein [Solanum habrochaites] 0.978 0.972 0.742 0.0
410610564754 Tm-1 protein [Solanum habrochaites] gi|4 0.978 0.972 0.743 0.0
407728549754 Tm-1 protein [Solanum habrochaites] 0.978 0.972 0.743 0.0
>gi|297735101|emb|CBI17463.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1144 bits (2960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/756 (77%), Positives = 654/756 (86%), Gaps = 13/756 (1%)

Query: 3   DKIPRVFCIGTADTKLEELQFLSGSVRSNLATFSNNSSS-KVDVVVVDVSVSGKETENVG 61
           D  PRVFCIGTADTKLEE++FL+ SVRSNL  FSN SS+ KV V VVDVS    E ++VG
Sbjct: 5   DGAPRVFCIGTADTKLEEIRFLAESVRSNLNNFSNTSSTTKVQVTVVDVSTHQNEIDSVG 64

Query: 62  DFKFVKRKAVLSCLPESNGKIPDELDDDRGKAISFMSKALENFLQIAIEDQVLAGVIGLG 121
           DF FV RK +LSC   S  + P  L +DRGKA+  MSKALE++L+ A ED VLAG IG+G
Sbjct: 65  DFIFVPRKDILSCYFGSMEQTPGPLPEDRGKAVGIMSKALEHYLKKAQEDHVLAGAIGIG 124

Query: 122 GSGGTSLISSAFKSLPIGLPKVIVSTVASGQTEPYIGTSDLILIPSVVDVCGINSVSRVV 181
           GSGGTS+ISSAFKS+PIG+PK+IVSTVASGQTEPY+GTSDLIL PSVVDVCGIN+VSRVV
Sbjct: 125 GSGGTSIISSAFKSVPIGMPKIIVSTVASGQTEPYVGTSDLILFPSVVDVCGINNVSRVV 184

Query: 182 FANAGAAFAGMVVGRLERLRDFGASKEKCTVGITMFGVTTPCVNAVKERLEKEGYETMVF 241
            +NAGAAFAGMV+GRL+  RD  +S EK TVG+TMFGVTTPCVNAVKERL KEGYET+VF
Sbjct: 185 LSNAGAAFAGMVIGRLQASRDSLSSNEKFTVGVTMFGVTTPCVNAVKERLVKEGYETLVF 244

Query: 242 HATGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSV 301
           HATG GGRAME LV+ GFIQGVLDITTTEVADYVVGGVMACDSSRFDA IEKKIPLV+SV
Sbjct: 245 HATGTGGRAMEDLVRGGFIQGVLDITTTEVADYVVGGVMACDSSRFDAMIEKKIPLVVSV 304

Query: 302 GALDMVNFGAKDTIPSKFQRRKIHVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRL 361
           GALDMVNFGAK TIPS   +R IHVHN+QVSL+RTTVDENKKFA FIANKLN++SSK+R+
Sbjct: 305 GALDMVNFGAKTTIPSHLLKRNIHVHNEQVSLVRTTVDENKKFAGFIANKLNKASSKVRV 364

Query: 362 CLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADALVD 421
           CLPQ GISALDAPGKPFYDPEAT TLI EL+ LIQTNEDRQV+VYP++IND EFA+ LVD
Sbjct: 365 CLPQKGISALDAPGKPFYDPEATVTLIKELQKLIQTNEDRQVEVYPYHINDPEFANTLVD 424

Query: 422 SFLEISGKN--------LMAFSSAHHVSCERHEDSVSNIYSSSHGTICYSPSNFPDARPE 473
           SFLEI  ++        + AF     +    HEDS+S      + TICYSPS+FPDARPE
Sbjct: 425 SFLEIRKRHSEDADPRKIAAFVPNQDL----HEDSISKPNLLGNETICYSPSDFPDARPE 480

Query: 474 TLQRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSL 533
           TLQRT++I+ +LK QI KG PIIGAGAGTGISAKFEEAGGVDLI++YNSGRFRMAGRGSL
Sbjct: 481 TLQRTRSIIQRLKDQISKGKPIIGAGAGTGISAKFEEAGGVDLIIIYNSGRFRMAGRGSL 540

Query: 534 AGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNF 593
           AGLLPFADANAVV++MA+EVLPVVKEVPVLAGVCGTDPFRR+D FLKQLE IGF GVQNF
Sbjct: 541 AGLLPFADANAVVVDMASEVLPVVKEVPVLAGVCGTDPFRRMDSFLKQLELIGFVGVQNF 600

Query: 594 PTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIV 653
           PTVGL DGNFRQNLEETGMGYGLEV+MI KAHKMGLLTTPYAFN  EAV MAKAGADIIV
Sbjct: 601 PTVGLIDGNFRQNLEETGMGYGLEVQMIGKAHKMGLLTTPYAFNRDEAVGMAKAGADIIV 660

Query: 654 AHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILK 713
           AHMGLTTSGSIGAKT++S+++SV RVQAIADAAH INP+ IVLCHGGPIS P EAEF+LK
Sbjct: 661 AHMGLTTSGSIGAKTSVSIEDSVVRVQAIADAAHSINPEVIVLCHGGPISGPQEAEFVLK 720

Query: 714 RTKGVHGFYGASSMERLPVEQAITSTMRQYKSISIK 749
           RTKGVHGFYGASSMERLPVE+AITST++QYKSI IK
Sbjct: 721 RTKGVHGFYGASSMERLPVERAITSTVQQYKSIRIK 756

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449464548|ref|XP_004149991.1| PREDICTED: UPF0261 protein SACE_5696-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449520847|ref|XP_004167444.1| PREDICTED: UPF0261 protein SACE_5696-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|410610534|dbj|BAM65780.1| Tm-1 protein [Solanum habrochaites] gi|410610570|dbj|BAM65798.1| Tm-1 protein [Solanum habrochaites] Back     alignment and taxonomy information
>gi|410610600|dbj|BAM65813.1| Tm-1 protein [Solanum habrochaites] Back     alignment and taxonomy information
>gi|410610540|dbj|BAM65783.1| Tm-1 protein [Solanum habrochaites] gi|410610548|dbj|BAM65787.1| Tm-1 protein [Solanum habrochaites] gi|410610550|dbj|BAM65788.1| Tm-1 protein [Solanum habrochaites] gi|410610576|dbj|BAM65801.1| Tm-1 protein [Solanum habrochaites] gi|410610578|dbj|BAM65802.1| Tm-1 protein [Solanum habrochaites] gi|410610580|dbj|BAM65803.1| Tm-1 protein [Solanum habrochaites] gi|410610582|dbj|BAM65804.1| Tm-1 protein [Solanum habrochaites] gi|410610584|dbj|BAM65805.1| Tm-1 protein [Solanum habrochaites] gi|410610586|dbj|BAM65806.1| Tm-1 protein [Solanum habrochaites] Back     alignment and taxonomy information
>gi|407728547|dbj|BAM48544.1| Tm-1 protein [Solanum habrochaites] gi|410610590|dbj|BAM65808.1| Tm-1 protein [Solanum habrochaites] gi|410610592|dbj|BAM65809.1| Tm-1 protein [Solanum habrochaites] Back     alignment and taxonomy information
>gi|410610596|dbj|BAM65811.1| Tm-1 protein [Solanum habrochaites] Back     alignment and taxonomy information
>gi|410610564|dbj|BAM65795.1| Tm-1 protein [Solanum habrochaites] gi|410610566|dbj|BAM65796.1| Tm-1 protein [Solanum habrochaites] Back     alignment and taxonomy information
>gi|407728549|dbj|BAM48545.1| Tm-1 protein [Solanum habrochaites] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query749
TAIR|locus:2154960754 AT5G66420 [Arabidopsis thalian 0.987 0.981 0.675 4.7e-261
ASPGD|ASPL0000051555279 AN8932 [Emericella nidulans (t 0.367 0.985 0.599 2.7e-84
ASPGD|ASPL0000046073442 AN8931 [Emericella nidulans (t 0.551 0.934 0.326 3.4e-54
UNIPROTKB|Q5LKM5411 Q5LKM5 "Putative uncharacteriz 0.387 0.705 0.302 1.1e-31
TIGR_CMR|SPO_A0356411 SPO_A0356 "conserved hypotheti 0.387 0.705 0.302 1.1e-31
TAIR|locus:2154960 AT5G66420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2512 (889.3 bits), Expect = 4.7e-261, P = 4.7e-261
 Identities = 507/751 (67%), Positives = 578/751 (76%)

Query:     7 RVFCIGTADTKLEELQFLSGSVRSNLATFXXXXXXXXXXXXXXXXXXG--KETENVGDFK 64
             RVFC+GTADTKL+EL+FL+GSVRSN+  F                     K+ +NV DF 
Sbjct:     7 RVFCVGTADTKLDELRFLAGSVRSNIGAFSKNSSSKVEVVIVDVSAGADQKQIDNVADFA 66

Query:    65 FVKRKAVLSCLPESNGKI-PDELDDDRGKAISFMSKALENFLQIAIEDQXXXXXXXXXXX 123
             FV R+ VLSC   SN +  P +L DDRG+A+  MSK LENFL+ A ED            
Sbjct:    67 FVTREEVLSCYIGSNQEEKPVKLPDDRGEAVGVMSKCLENFLRQAFEDNSLAGAIGLGGS 126

Query:   124 XXXXXXXXXFKSLPIGLPKVIVSTVASGQTEPYIGTSDLILIPSVVDVCGINSVSRXXXX 183
                      F+SLPIG+PKVIVSTVASGQTEPY+GTSDL+LIPS+VDVCGINSVSR    
Sbjct:   127 GGTSLISSAFRSLPIGIPKVIVSTVASGQTEPYVGTSDLVLIPSLVDVCGINSVSRVVFS 186

Query:   184 XXXXXXXXXXXXRLERLRDFGASKEKCTVGITMFGVTTPCVNAVKERLEKEGYETMVFHA 243
                         RLE  R   +   KCTVGITMFGVTTPCVNAV+E L +EGYET+VFHA
Sbjct:   187 NAGASFAGMVVGRLELFRSSPSDNGKCTVGITMFGVTTPCVNAVQEILTREGYETLVFHA 246

Query:   244 TGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGA 303
             TGVGGRAME+LVKEGFIQGV+DITTTEVAD++VGGVMACDSSRFD TIEK IPLVLSVGA
Sbjct:   247 TGVGGRAMESLVKEGFIQGVMDITTTEVADHLVGGVMACDSSRFDITIEKGIPLVLSVGA 306

Query:   304 LDMVNFGAKDTIPSKFQRRKIHVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCL 363
             LDMVNFG KDTIPS FQ RKIHVHN+QVSL+RTT +ENKKFA FIA+KLN+S+SK+R+C+
Sbjct:   307 LDMVNFGGKDTIPSHFQTRKIHVHNEQVSLIRTTAEENKKFARFIADKLNKSTSKVRVCI 366

Query:   364 PQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADALVDSF 423
             P+ G+SALDAPGKPF DPEATG LI+EL+ LIQTN+DRQV +Y H+IND EFA+ALV SF
Sbjct:   367 PEKGLSALDAPGKPFCDPEATGALINELQGLIQTNDDRQVNIYSHHINDPEFAEALVASF 426

Query:   424 LEISGKNLMAFSSAHHVSCE----RHEDSVSNIYSSSHGTICYSPSNFPDARPETLQRTQ 479
             LEI  K       +   S +     H+D   ++ S     I YSP  FP+A+PETL+RTQ
Sbjct:   427 LEICPKTYAQIKPSETTSTKPSTGEHDDG--HVRSRLE-RIPYSPKEFPNAKPETLERTQ 483

Query:   480 AILSKLKYQIDKGLPXXXXXXXXXXXXKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPF 539
             AIL +L+ QI+KG+P            KFEEAGG+DLIV+YNSGRFRMAGRGSLAGLLPF
Sbjct:   484 AILGRLRDQIEKGIPIIGGGAGTGISAKFEEAGGIDLIVIYNSGRFRMAGRGSLAGLLPF 543

Query:   540 ADANAVVLEMANXXXXXXXXXXXXAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLF 599
             ADANAVVLEMAN            AGVC TDPFRR+DYFLKQLESIGF GVQNFPTVGLF
Sbjct:   544 ADANAVVLEMANEVLPVVKAVPVLAGVCATDPFRRMDYFLKQLESIGFVGVQNFPTVGLF 603

Query:   600 DGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLT 659
             DGNFRQNLEETGMGYGLEV+MI +AHKMGLLTTPYAFN  E  +MAKAGADIIVAHMGLT
Sbjct:   604 DGNFRQNLEETGMGYGLEVKMISEAHKMGLLTTPYAFNPKEGEEMAKAGADIIVAHMGLT 663

Query:   660 TSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKG-V 718
             TSG+IGAKTA+S++ESV RVQAIADAA R NPD IVLCHGGPIS P EAEF+LKRT+G V
Sbjct:   664 TSGNIGAKTAVSVEESVVRVQAIADAARRFNPDIIVLCHGGPISGPEEAEFVLKRTQGCV 723

Query:   719 HGFYGASSMERLPVEQAITSTMRQYKSISIK 749
             HGFYGASSMERLPVEQAIT+T+++YKSISIK
Sbjct:   724 HGFYGASSMERLPVEQAITNTVQKYKSISIK 754
GO:0009507 "chloroplast" evidence=ISM
ASPGD|ASPL0000051555 AN8932 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000046073 AN8931 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LKM5 Q5LKM5 "Putative uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_A0356 SPO_A0356 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00036910001
SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (717 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00036914001
SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (272 aa)
• •   ••0.737
GSVIVG00033741001
SubName- Full=Chromosome undetermined scaffold_69, whole genome shotgun sequence; (204 aa)
• •   ••0.478
GSVIVG00032405001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (161 aa)
•       0.468

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query749
pfam06792403 pfam06792, UPF0261, Uncharacterized protein family 0.0
PRK02399406 PRK02399, PRK02399, hypothetical protein; Provisio 1e-170
pfam09370268 pfam09370, TIM-br_sig_trns, TIM-barrel signal tran 1e-167
COG5441401 COG5441, COG5441, Uncharacterized conserved protei 1e-135
COG5564276 COG5564, COG5564, Predicted TIM-barrel enzyme, pos 1e-124
>gnl|CDD|219178 pfam06792, UPF0261, Uncharacterized protein family (UPF0261) Back     alignment and domain information 
 Score =  546 bits (1410), Expect = 0.0
 Identities = 193/424 (45%), Positives = 263/424 (62%), Gaps = 22/424 (5%)

Query: 6   PRVFCIGTADTKLEELQFLSGSVRSNLATFSNNSSSKVDVVVVDVSVSGKETENVGDFKF 65
             +  IGT DTK EEL +L   + +          + ++V+V+DVSV G  +        
Sbjct: 2   KTILIIGTLDTKGEELAYLRDLIEA----------AGLEVLVIDVSVLGPPSFPPD---- 47

Query: 66  VKRKAVLSCLPESNGKIPDELDDDRGKAISFMSKALENFLQIAIEDQVLAGVIGLGGSGG 125
           +  + V      S   +      DRG+A++ M++     +    ++  + GVIGLGGSGG
Sbjct: 48  ISAEEVAEAAGSSIEAVIA--GGDRGEAMAAMARGAAALVSELYDEGKIDGVIGLGGSGG 105

Query: 126 TSLISSAFKSLPIGLPKVIVSTVASGQTEPYIGTSDLILIPSVVDVCGINSVSRVVFANA 185
           T+L + A ++LPIG+PK++VSTVASG   PY+G SD+ ++PSVVDV G+N +SR V +NA
Sbjct: 106 TALATPAMRALPIGVPKLMVSTVASGDVSPYVGASDITMMPSVVDVAGLNRISRAVLSNA 165

Query: 186 GAAFAGMVVGRLERLRDFGASKEKCTVGITMFGVTTPCVNAVKERLEKEGYETMVFHATG 245
             A AGM     +   D     +K  +GITMFGVTTPCV A +E LE  GYE +VFHATG
Sbjct: 166 AGAVAGMARAYEKPDADR----DKPLIGITMFGVTTPCVQAAREALEARGYEVLVFHATG 221

Query: 246 VGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALD 305
            GGRAME+L++EG   GVLD+TTTEVAD + GGV++    R  A   K IP V+S GALD
Sbjct: 222 TGGRAMESLIREGAFAGVLDLTTTEVADELFGGVLSAGPDRLTAAARKGIPQVVSPGALD 281

Query: 306 MVNFGAKDTIPSKFQRRKIHVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQ 365
           MVNFGA DT+P +F+ RK+H HN QV+LMRTT +EN+    +IA KLN++   +R+ LP 
Sbjct: 282 MVNFGAWDTVPERFRGRKLHEHNPQVTLMRTTPEENRAIGRWIAEKLNRAKGPVRVLLPL 341

Query: 366 NGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQVKVYPHNINDSEFADALVDSFLE 425
            G+SALD  G PFYDPEA   L   L   +  + +R+V   P +IND EFA+A V +F E
Sbjct: 342 KGVSALDREGGPFYDPEADAALFDTLERTL--DPNRRVIEVPAHINDPEFAEAAVAAFDE 399

Query: 426 ISGK 429
           +   
Sbjct: 400 LLAA 403

Length = 403
>gnl|CDD|179420 PRK02399, PRK02399, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|117912 pfam09370, TIM-br_sig_trns, TIM-barrel signal transduction protein Back     alignment and domain information
>gnl|CDD|227728 COG5441, COG5441, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|227851 COG5564, COG5564, Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 749
PF06792403 UPF0261: Uncharacterised protein family (UPF0261); 100.0
PRK02399406 hypothetical protein; Provisional 100.0
COG5441401 Uncharacterized conserved protein [Function unknow 100.0
PF09370268 TIM-br_sig_trns: TIM-barrel signal transduction pr 100.0
COG5564276 Predicted TIM-barrel enzyme, possibly a dioxygenas 100.0
cd04730236 NPD_like 2-Nitropropane dioxygenase (NPD), one of 98.51
PRK00278260 trpC indole-3-glycerol-phosphate synthase; Reviewe 98.21
cd00331217 IGPS Indole-3-glycerol phosphate synthase (IGPS); 98.17
TIGR02320285 PEP_mutase phosphoenolpyruvate phosphomutase. A cl 97.98
cd06556240 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup 97.98
PRK13111258 trpA tryptophan synthase subunit alpha; Provisiona 97.89
cd04724242 Tryptophan_synthase_alpha Ttryptophan synthase (TR 97.86
PLN02591250 tryptophan synthase 97.79
TIGR02321290 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f 97.78
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 97.69
PRK11320292 prpB 2-methylisocitrate lyase; Provisional 97.67
PRK00311264 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 97.65
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 97.64
cd04722200 TIM_phosphate_binding TIM barrel proteins share a 97.6
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 97.54
TIGR03151307 enACPred_II putative enoyl-(acyl-carrier-protein) 97.52
PRK00208250 thiG thiazole synthase; Reviewed 97.49
cd04728248 ThiG Thiazole synthase (ThiG) is the tetrameric en 97.45
PRK04302223 triosephosphate isomerase; Provisional 97.43
cd00429211 RPE Ribulose-5-phosphate 3-epimerase (RPE). This e 97.42
TIGR01163210 rpe ribulose-phosphate 3-epimerase. This family co 97.35
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 97.33
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 97.29
TIGR02319294 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos 97.26
TIGR00262256 trpA tryptophan synthase, alpha subunit. Tryptopha 97.22
PRK05286344 dihydroorotate dehydrogenase 2; Reviewed 97.17
cd02809299 alpha_hydroxyacid_oxid_FMN Family of homologous FM 97.15
cd06557254 KPHMT-like Ketopantoate hydroxymethyltransferase ( 97.13
cd04726202 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl 97.12
cd00381325 IMPDH IMPDH: The catalytic domain of the inosine m 97.07
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 97.06
TIGR01037300 pyrD_sub1_fam dihydroorotate dehydrogenase (subfam 97.05
PRK13125244 trpA tryptophan synthase subunit alpha; Provisiona 97.02
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 96.97
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 96.94
PLN02274505 inosine-5'-monophosphate dehydrogenase 96.9
PRK13957247 indole-3-glycerol-phosphate synthase; Provisional 96.88
TIGR02317285 prpB methylisocitrate lyase. Members of this famil 96.88
PF03060330 NMO: Nitronate monooxygenase; InterPro: IPR004136 96.7
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 96.7
cd04731243 HisF The cyclase subunit of imidazoleglycerol phos 96.59
TIGR00737319 nifR3_yhdG putative TIM-barrel protein, nifR3 fami 96.59
TIGR01302450 IMP_dehydrog inosine-5'-monophosphate dehydrogenas 96.57
PRK06843404 inosine 5-monophosphate dehydrogenase; Validated 96.54
cd04738327 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl 96.53
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 96.43
cd02801231 DUS_like_FMN Dihydrouridine synthase-like (DUS-lik 96.41
COG2513289 PrpB PEP phosphonomutase and related enzymes [Carb 96.4
cd00331217 IGPS Indole-3-glycerol phosphate synthase (IGPS); 96.39
cd04739325 DHOD_like Dihydroorotate dehydrogenase (DHOD) like 96.35
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 96.18
PRK01060281 endonuclease IV; Provisional 96.17
cd04742 418 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom 96.1
PF13714238 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB 96.06
TIGR01303475 IMP_DH_rel_1 IMP dehydrogenase family protein. Thi 96.04
cd04727283 pdxS PdxS is a subunit of the pyridoxal 5'-phospha 96.0
PRK05581220 ribulose-phosphate 3-epimerase; Validated 95.98
TIGR01182204 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho 95.95
PLN02424332 ketopantoate hydroxymethyltransferase 95.94
PRK00043212 thiE thiamine-phosphate pyrophosphorylase; Reviewe 95.84
PF00218254 IGPS: Indole-3-glycerol phosphate synthase; InterP 95.7
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 95.67
TIGR03128206 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the 95.65
TIGR00735254 hisF imidazoleglycerol phosphate synthase, cyclase 95.6
PRK05567 486 inosine 5'-monophosphate dehydrogenase; Reviewed 95.59
cd04743320 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma 95.55
PRK08318 420 dihydropyrimidine dehydrogenase subunit B; Validat 95.47
PRK06552213 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 95.37
TIGR01304 369 IMP_DH_rel_2 IMP dehydrogenase family protein. Thi 95.34
PRK07565334 dihydroorotate dehydrogenase 2; Reviewed 95.32
PRK06801286 hypothetical protein; Provisional 95.29
TIGR00343287 pyridoxal 5'-phosphate synthase, synthase subunit 95.25
PRK05718212 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 95.22
PRK11815333 tRNA-dihydrouridine synthase A; Provisional 95.09
cd04724242 Tryptophan_synthase_alpha Ttryptophan synthase (TR 95.05
TIGR01859282 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, 95.04
PRK10550312 tRNA-dihydrouridine synthase C; Provisional 94.97
PRK07807479 inosine 5-monophosphate dehydrogenase; Validated 94.91
PRK11840326 bifunctional sulfur carrier protein/thiazole synth 94.9
PF00290259 Trp_syntA: Tryptophan synthase alpha chain; InterP 94.88
TIGR00222263 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 94.85
PRK02506310 dihydroorotate dehydrogenase 1A; Reviewed 94.82
PF04131192 NanE: Putative N-acetylmannosamine-6-phosphate epi 94.78
cd02940299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 94.74
PRK12738286 kbaY tagatose-bisphosphate aldolase; Reviewed 94.72
cd04741294 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c 94.69
cd00947276 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a 94.69
COG0134254 TrpC Indole-3-glycerol phosphate synthase [Amino a 94.68
PRK13399347 fructose-1,6-bisphosphate aldolase; Provisional 94.56
COG2070336 Dioxygenases related to 2-nitropropane dioxygenase 94.51
TIGR03572232 WbuZ glycosyl amidation-associated protein WbuZ. T 94.45
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 94.42
PRK13802 695 bifunctional indole-3-glycerol phosphate synthase/ 94.42
PRK15063428 isocitrate lyase; Provisional 94.4
PRK10558256 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro 94.37
PRK09427 454 bifunctional indole-3-glycerol phosphate synthase/ 94.32
PRK07998283 gatY putative fructose-1,6-bisphosphate aldolase; 94.32
PRK10128267 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional 94.29
TIGR00167288 cbbA ketose-bisphosphate aldolases. fructose-bisph 94.16
PRK00278260 trpC indole-3-glycerol-phosphate synthase; Reviewe 94.02
TIGR01036335 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 93.94
PRK07565334 dihydroorotate dehydrogenase 2; Reviewed 93.91
PTZ00314495 inosine-5'-monophosphate dehydrogenase; Provisiona 93.88
TIGR01521347 FruBisAldo_II_B fructose-bisphosphate aldolase, cl 93.86
TIGR01304369 IMP_DH_rel_2 IMP dehydrogenase family protein. Thi 93.81
cd04732234 HisA HisA. Phosphoribosylformimino-5-aminoimidazol 93.8
PRK07084321 fructose-bisphosphate aldolase; Provisional 93.78
TIGR00742318 yjbN tRNA dihydrouridine synthase A. Members of th 93.73
TIGR02151333 IPP_isom_2 isopentenyl-diphosphate delta-isomerase 93.7
PRK05286344 dihydroorotate dehydrogenase 2; Reviewed 93.69
PF00478352 IMPDH: IMP dehydrogenase / GMP reductase domain; I 93.68
cd00956211 Transaldolase_FSA Transaldolase-like fructose-6-ph 93.66
PRK06015201 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 93.59
PF01261213 AP_endonuc_2: Xylose isomerase-like TIM barrel; In 93.58
cd04738327 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl 93.57
PRK13125244 trpA tryptophan synthase subunit alpha; Provisiona 93.57
PRK06806281 fructose-bisphosphate aldolase; Provisional 93.53
PRK09195284 gatY tagatose-bisphosphate aldolase; Reviewed 93.4
TIGR02631 382 xylA_Arthro xylose isomerase, Arthrobacter type. T 93.3
TIGR00262256 trpA tryptophan synthase, alpha subunit. Tryptopha 93.28
PRK12857284 fructose-1,6-bisphosphate aldolase; Reviewed 93.26
PLN02460338 indole-3-glycerol-phosphate synthase 93.19
cd02911233 arch_FMN Archeal FMN-binding domain. This family o 93.17
PRK09997258 hydroxypyruvate isomerase; Provisional 93.07
PRK12595360 bifunctional 3-deoxy-7-phosphoheptulonate synthase 92.87
PRK08185283 hypothetical protein; Provisional 92.83
TIGR01858282 tag_bisphos_ald class II aldolase, tagatose bispho 92.81
PRK10415321 tRNA-dihydrouridine synthase B; Provisional 92.71
TIGR00693196 thiE thiamine-phosphate pyrophosphorylase. This mo 92.71
cd04739325 DHOD_like Dihydroorotate dehydrogenase (DHOD) like 92.7
cd00946345 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis 92.67
PRK07315293 fructose-bisphosphate aldolase; Provisional 92.66
PRK05437352 isopentenyl pyrophosphate isomerase; Provisional 92.6
PRK08091228 ribulose-phosphate 3-epimerase; Validated 92.59
PRK08649368 inosine 5-monophosphate dehydrogenase; Validated 92.54
TIGR00736231 nifR3_rel_arch TIM-barrel protein, putative. Membe 92.51
PF01116287 F_bP_aldolase: Fructose-bisphosphate aldolase clas 92.5
cd00564196 TMP_TenI Thiamine monophosphate synthase (TMP synt 92.49
PRK09196347 fructose-1,6-bisphosphate aldolase; Reviewed 92.48
PRK13210284 putative L-xylulose 5-phosphate 3-epimerase; Revie 92.44
PRK06256336 biotin synthase; Validated 92.4
cd02801231 DUS_like_FMN Dihydrouridine synthase-like (DUS-lik 92.38
cd00019279 AP2Ec AP endonuclease family 2; These endonuclease 92.33
PRK05458326 guanosine 5'-monophosphate oxidoreductase; Provisi 92.31
TIGR00007230 phosphoribosylformimino-5-aminoimidazole carboxami 92.27
TIGR00676272 fadh2 5,10-methylenetetrahydrofolate reductase, pr 92.23
cd02922344 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom 92.13
TIGR00736231 nifR3_rel_arch TIM-barrel protein, putative. Membe 92.05
PF01081196 Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 92.02
cd02803327 OYE_like_FMN_family Old yellow enzyme (OYE)-like F 92.02
cd02930353 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin 91.96
PF02219287 MTHFR: Methylenetetrahydrofolate reductase; InterP 91.89
PRK08673335 3-deoxy-7-phosphoheptulonate synthase; Reviewed 91.81
COG1902363 NemA NADH:flavin oxidoreductases, Old Yellow Enzym 91.81
PRK09856275 fructoselysine 3-epimerase; Provisional 91.78
cd04737351 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d 91.73
PRK12737284 gatY tagatose-bisphosphate aldolase; Reviewed 91.72
PF01180295 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP 91.69
PRK00748233 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met 91.68
TIGR02814 444 pfaD_fam PfaD family protein. The protein PfaD is 91.68
PRK06552213 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 91.66
PRK08610286 fructose-bisphosphate aldolase; Reviewed 91.58
COG0159265 TrpA Tryptophan synthase alpha chain [Amino acid t 91.49
COG0042323 tRNA-dihydrouridine synthase [Translation, ribosom 91.43
cd04722200 TIM_phosphate_binding TIM barrel proteins share a 91.13
TIGR01037300 pyrD_sub1_fam dihydroorotate dehydrogenase (subfam 90.86
PRK07695201 transcriptional regulator TenI; Provisional 90.79
PRK02083253 imidazole glycerol phosphate synthase subunit HisF 90.74
TIGR00640132 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal 90.68
TIGR01036335 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 90.65
PRK09989258 hypothetical protein; Provisional 90.62
cd02940299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 90.49
COG3010229 NanE Putative N-acetylmannosamine-6-phosphate epim 90.41
TIGR01334277 modD putative molybdenum utilization protein ModD. 90.41
PRK13398266 3-deoxy-7-phosphoheptulonate synthase; Provisional 90.1
KOG1606296 consensus Stationary phase-induced protein, SOR/SN 90.08
PRK14057254 epimerase; Provisional 89.97
PLN02334229 ribulose-phosphate 3-epimerase 89.82
PRK09140206 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R 89.77
TIGR01520357 FruBisAldo_II_A fructose-bisphosphate aldolase, cl 89.67
COG2185143 Sbm Methylmalonyl-CoA mutase, C-terminal domain/su 89.46
cd04734343 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN 89.44
PRK05458326 guanosine 5'-monophosphate oxidoreductase; Provisi 89.2
PRK09920219 acetyl-CoA:acetoacetyl-CoA transferase subunit alp 89.11
TIGR02311249 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 88.81
PF00478 352 IMPDH: IMP dehydrogenase / GMP reductase domain; I 88.79
TIGR00875213 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/ 88.79
KOG4201289 consensus Anthranilate synthase component II [Amin 88.75
PRK13523337 NADPH dehydrogenase NamA; Provisional 88.74
PRK07114222 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 88.63
PRK07709285 fructose-bisphosphate aldolase; Provisional 88.56
PTZ00372413 endonuclease 4-like protein; Provisional 88.54
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 88.52
TIGR03234254 OH-pyruv-isom hydroxypyruvate isomerase. This enzy 88.5
PRK13307391 bifunctional formaldehyde-activating enzyme/3-hexu 88.32
cd04741294 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c 88.31
PRK07028 430 bifunctional hexulose-6-phosphate synthase/ribonuc 88.25
PRK09722229 allulose-6-phosphate 3-epimerase; Provisional 88.19
PRK12331 448 oxaloacetate decarboxylase; Provisional 88.16
PRK08649 368 inosine 5-monophosphate dehydrogenase; Validated 88.16
PRK05835307 fructose-bisphosphate aldolase; Provisional 87.87
TIGR02429222 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit 87.85
PRK08255765 salicylyl-CoA 5-hydroxylase; Reviewed 87.68
PRK12656222 fructose-6-phosphate aldolase; Reviewed 87.63
PRK08883220 ribulose-phosphate 3-epimerase; Provisional 87.51
PRK08745223 ribulose-phosphate 3-epimerase; Provisional 87.51
PRK14024241 phosphoribosyl isomerase A; Provisional 87.4
cd00381 325 IMPDH IMPDH: The catalytic domain of the inosine m 87.29
PRK01362214 putative translaldolase; Provisional 87.23
PRK06852304 aldolase; Validated 86.79
cd04735353 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN 86.69
TIGR03239249 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co 86.68
TIGR03217333 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. 86.64
PRK14040 593 oxaloacetate decarboxylase; Provisional 86.48
PTZ00314495 inosine-5'-monophosphate dehydrogenase; Provisiona 86.46
PLN02535364 glycolate oxidase 86.29
COG1082274 IolE Sugar phosphate isomerases/epimerases [Carboh 86.21
cd06557 254 KPHMT-like Ketopantoate hydroxymethyltransferase ( 86.04
cd02811326 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di 86.01
cd08210364 RLP_RrRLP Ribulose bisphosphate carboxylase like p 85.99
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 85.9
TIGR02660 365 nifV_homocitr homocitrate synthase NifV. This fami 85.8
PRK08508279 biotin synthase; Provisional 85.77
smart00518273 AP2Ec AP endonuclease family 2. These endonuclease 85.76
PRK07455187 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 85.74
PRK08318420 dihydropyrimidine dehydrogenase subunit B; Validat 85.56
cd00537274 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 85.22
TIGR03700351 mena_SCO4494 putative menaquinone biosynthesis pro 85.19
TIGR02708367 L_lactate_ox L-lactate oxidase. Members of this pr 85.15
cd00453340 FTBP_aldolase_II Fructose/tagarose-bisphosphate al 85.14
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 84.88
cd04736361 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin 84.88
PF00809210 Pterin_bind: Pterin binding enzyme This Prosite en 84.81
PRK05848273 nicotinate-nucleotide pyrophosphorylase; Provision 84.58
PRK07807479 inosine 5-monophosphate dehydrogenase; Validated 84.5
TIGR00433296 bioB biotin synthetase. Catalyzes the last step of 84.35
PRK13366284 protocatechuate 4,5-dioxygenase subunit beta; Prov 84.1
PRK00311 264 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 84.01
cd08601256 GDPD_SaGlpQ_like Glycerophosphodiester phosphodies 83.95
PRK08654 499 pyruvate carboxylase subunit A; Validated 83.9
PRK07455187 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 83.78
cd00429211 RPE Ribulose-5-phosphate 3-epimerase (RPE). This e 83.46
cd00311242 TIM Triosephosphate isomerase (TIM) is a glycolyti 83.35
PRK05581220 ribulose-phosphate 3-epimerase; Validated 83.17
PRK04180293 pyridoxal biosynthesis lyase PdxS; Provisional 83.12
cd01311263 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) 83.03
PF01729169 QRPTase_C: Quinolinate phosphoribosyl transferase, 83.03
cd06298268 PBP1_CcpA_like Ligand-binding domain of the catabo 82.75
cd07939259 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and 82.7
PRK06096284 molybdenum transport protein ModD; Provisional 82.57
PRK08591 451 acetyl-CoA carboxylase biotin carboxylase subunit; 82.5
cd04732234 HisA HisA. Phosphoribosylformimino-5-aminoimidazol 82.44
PRK08195337 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac 82.37
COG3836255 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 82.27
PF07302221 AroM: AroM protein; InterPro: IPR010843 This famil 82.25
CHL00162267 thiG thiamin biosynthesis protein G; Validated 82.22
TIGR01305343 GMP_reduct_1 guanosine monophosphate reductase, eu 82.15
PRK14567253 triosephosphate isomerase; Provisional 82.07
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 82.07
cd01573272 modD_like ModD; Quinolinate phosphoribosyl transfe 82.0
TIGR03699340 mena_SCO4550 menaquinone biosynthesis protein, SCO 81.95
cd04731243 HisF The cyclase subunit of imidazoleglycerol phos 81.93
PF01207309 Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 81.9
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 81.88
PRK12677 384 xylose isomerase; Provisional 81.7
TIGR03551343 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav 81.27
TIGR00259257 thylakoid_BtpA membrane complex biogenesis protein 81.17
PLN02389379 biotin synthase 81.15
PRK09197350 fructose-bisphosphate aldolase; Provisional 80.62
cd08607290 GDPD_GDE5 Glycerophosphodiester phosphodiesterase 80.3
PRK07428288 nicotinate-nucleotide pyrophosphorylase; Provision 80.18
PF02514 1098 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: 80.17
cd06306268 PBP1_TorT-like TorT-like proteins, a periplasmic b 80.02
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised Back     alignment and domain information 
Probab=100.00  E-value=1.6e-154  Score=1247.01  Aligned_cols=402  Identities=48%  Similarity=0.780  Sum_probs=384.3

Q ss_pred             CCEEEEEEcCcccHHHHHHHHHHHHccccccCCCCCCCCcEEEEeccCCCCCCCCCCCccccChHHHHhhCCCCCCCCCC
Q 004491            5 IPRVFCIGTADTKLEELQFLSGSVRSNLATFSNNSSSKVDVVVVDVSVSGKETENVGDFKFVKRKAVLSCLPESNGKIPD   84 (749)
Q Consensus         5 ~~tV~lIGT~DTK~~E~~ylr~~I~~~~~~~~~~~~~G~~v~~iDvg~~~~~~~~~~D~~~Is~~~Va~~~~~~~~~~~~   84 (749)
                      ||+|+||||||||++|+.|||++|++          .|++|++||||+.+.++ ..+|   ||+++|+++++.+.   +.
T Consensus         1 M~tI~iigT~DTK~~E~~yl~~~i~~----------~G~~v~~iDvg~~~~~~-~~~d---i~~~eVa~~~g~~~---~~   63 (403)
T PF06792_consen    1 MKTIAIIGTLDTKGEELLYLRDQIEA----------QGVEVLLIDVGTLGEPS-FPPD---ISREEVARAAGDSI---EA   63 (403)
T ss_pred             CCEEEEEEccCCCHHHHHHHHHHHHH----------CCCcEEEEEcCCCCCCC-CCCC---cCHHHHHHhcCCCh---HH
Confidence            79999999999999999999999999          69999999999998665 4478   99999999987652   23


Q ss_pred             c-ccCcHHHHHHHHHHHHHHHHHHhHhcCcccEEEEecCcchhHHHHHHhhhCCCCCCeeEEecccCCCCCCCcccCCce
Q 004491           85 E-LDDDRGKAISFMSKALENFLQIAIEDQVLAGVIGLGGSGGTSLISSAFKSLPIGLPKVIVSTVASGQTEPYIGTSDLI  163 (749)
Q Consensus        85 ~-~~~dRg~Ai~~M~~~~~~~l~~l~~~g~i~GVIglGGs~GT~lat~aMr~LPiG~PKlmVSTmASGd~~pyVG~sDI~  163 (749)
                      . ...||++||++|++|+++++++||++|+||||||+|||+||+|++++||+||+||||||||||||||++||||++||+
T Consensus        64 ~~~~~dRg~ai~~M~~ga~~~v~~l~~~g~i~Gvi~~GGs~GT~lat~aMr~LPiG~PKlmVST~ASGd~~~yvg~sDI~  143 (403)
T PF06792_consen   64 VRSSGDRGEAIEAMARGAARFVSDLYDEGKIDGVIGIGGSGGTALATAAMRALPIGFPKLMVSTMASGDTSPYVGESDIT  143 (403)
T ss_pred             hhccCCHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCccHHHHHHHHHhCCCCCCeEEEEccCCCCcccccCcCCEE
Confidence            3 346999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccccccCcHHHHHHHHHHHHHHhccccchhhhccccCCCCCCcEEEEeccCCchHHHHHHHHHHHhcCccEEEEec
Q 004491          164 LIPSVVDVCGINSVSRVVFANAGAAFAGMVVGRLERLRDFGASKEKCTVGITMFGVTTPCVNAVKERLEKEGYETMVFHA  243 (749)
Q Consensus       164 mm~SVvDIaGLN~Isr~VL~NAA~AiaGMv~~~~~~~~~~~~~~~kp~IgiTMFGvTTp~V~~~r~~Le~~GyEvlVFHA  243 (749)
                      ||||||||+|||+|||+||+|||+||+||++.+...    ....+||+|||||||||||||+++|++||++||||+||||
T Consensus       144 mm~SVvDiaGlN~isr~vL~NAA~Ai~GM~~~~~~~----~~~~~kp~I~iTmfGvTTp~V~~~~~~Le~~G~Ev~VFHA  219 (403)
T PF06792_consen  144 MMYSVVDIAGLNSISRRVLSNAAGAIAGMAKAYESP----NQQEDKPLIGITMFGVTTPCVDAIRERLEEEGYEVLVFHA  219 (403)
T ss_pred             EeeeccccccCCHHHHHHHHHHHHHHHHHhcccccc----cccCCCcEEEEECCCCcHHHHHHHHHHHHhcCCeEEEEcC
Confidence            999999999999999999999999999999866432    2337899999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHcCCceEEEeCchhhhhhhhhCCccCCCCchhhhhhhcCCCeEEecCccccccCCCCCCCCccccCCc
Q 004491          244 TGVGGRAMEALVKEGFIQGVLDITTTEVADYVVGGVMACDSSRFDATIEKKIPLVLSVGALDMVNFGAKDTIPSKFQRRK  323 (749)
Q Consensus       244 TG~GGrAME~Li~eG~~~gVlDlTttElaD~l~GGv~saGp~RL~AA~~~GIPqVVspGalDmVnFG~~dtvPe~f~~R~  323 (749)
                      ||+||||||+||++|+||||||||||||||||+||+++|||+||+||+|+||||||||||||||||||+||||++|++|+
T Consensus       220 tG~GG~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~GIP~Vvs~GalDmVnFg~~~tvPe~~~~R~  299 (403)
T PF06792_consen  220 TGTGGRAMERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARAGIPQVVSPGALDMVNFGPPDTVPEKFKGRK  299 (403)
T ss_pred             CCCchHHHHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHcCCCEEEecCccceeccCCcccCCHhhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCcceEEecCHHHHHHHHHHHHHHHccCCCCeEEEeeCCCCcccCCCCCCCCChhhhHHHHHHHHHhcccCCCceE
Q 004491          324 IHVHNQQVSLMRTTVDENKKFAAFIANKLNQSSSKIRLCLPQNGISALDAPGKPFYDPEATGTLISELRTLIQTNEDRQV  403 (749)
Q Consensus       324 ~~~HNp~vTlmRTt~eE~~~ig~~iA~kLn~a~gpv~vllP~~G~S~lD~~G~pf~DPeAd~al~~~L~~~l~~~~~~~v  403 (749)
                      +|+|||+|||||||+|||+++|+|||+|||+++|||+||||+||||++|+||+||||||||++||++||++|++ ..++|
T Consensus       300 ~~~HNp~vTlmRtt~eE~~~~g~~ia~kLn~~~gpv~v~lP~~G~S~~d~~G~~f~Dpead~al~~~l~~~l~~-~~i~v  378 (403)
T PF06792_consen  300 LYEHNPQVTLMRTTPEENRQLGEFIAEKLNRAKGPVRVLLPLGGVSALDRPGGPFYDPEADEALFDALRENLDG-SGIEV  378 (403)
T ss_pred             ceecCCceeEeeCCHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCcccCCCCCcCcChhHHHHHHHHHHHhCCC-CCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997 35789


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHHh
Q 004491          404 KVYPHNINDSEFADALVDSFLEISG  428 (749)
Q Consensus       404 ~~~d~hINDp~FA~a~a~~l~~l~~  428 (749)
                      +++|+|||||+||++++++|+++|+
T Consensus       379 ~~~~~hIND~~FA~~~~~~l~~~~~  403 (403)
T PF06792_consen  379 IEVDAHINDPEFADAAAEALLELME  403 (403)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999984

>PRK02399 hypothetical protein; Provisional Back     alignment and domain information
>COG5441 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) Back     alignment and domain information
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only] Back     alignment and domain information
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites Back     alignment and domain information
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed Back     alignment and domain information
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water Back     alignment and domain information
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase Back     alignment and domain information
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds Back     alignment and domain information
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>PRK11320 prpB 2-methylisocitrate lyase; Provisional Back     alignment and domain information
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II Back     alignment and domain information
>PRK00208 thiG thiazole synthase; Reviewed Back     alignment and domain information
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism Back     alignment and domain information
>PRK04302 triosephosphate isomerase; Provisional Back     alignment and domain information
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) Back     alignment and domain information
>TIGR01163 rpe ribulose-phosphate 3-epimerase Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase Back     alignment and domain information
>TIGR00262 trpA tryptophan synthase, alpha subunit Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes Back     alignment and domain information
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway Back     alignment and domain information
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) Back     alignment and domain information
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein Back     alignment and domain information
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>PLN02274 inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional Back     alignment and domain information
>TIGR02317 prpB methylisocitrate lyase Back     alignment and domain information
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) Back     alignment and domain information
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family Back     alignment and domain information
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain Back     alignment and domain information
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water Back     alignment and domain information
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>PRK01060 endonuclease IV; Provisional Back     alignment and domain information
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD Back     alignment and domain information
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B Back     alignment and domain information
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein Back     alignment and domain information
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa Back     alignment and domain information
>PRK05581 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>TIGR01182 eda Entner-Doudoroff aldolase Back     alignment and domain information
>PLN02424 ketopantoate hydroxymethyltransferase Back     alignment and domain information
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed Back     alignment and domain information
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase Back     alignment and domain information
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit Back     alignment and domain information
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed Back     alignment and domain information
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) Back     alignment and domain information
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated Back     alignment and domain information
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein Back     alignment and domain information
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PRK06801 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 Back     alignment and domain information
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>PRK11815 tRNA-dihydrouridine synthase A; Provisional Back     alignment and domain information
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) Back     alignment and domain information
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist Back     alignment and domain information
>PRK10550 tRNA-dihydrouridine synthase C; Provisional Back     alignment and domain information
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional Back     alignment and domain information
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 Back     alignment and domain information
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase Back     alignment and domain information
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed Back     alignment and domain information
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [] Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed Back     alignment and domain information
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain Back     alignment and domain information
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases Back     alignment and domain information
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional Back     alignment and domain information
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] Back     alignment and domain information
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PRK15063 isocitrate lyase; Provisional Back     alignment and domain information
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional Back     alignment and domain information
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional Back     alignment and domain information
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed Back     alignment and domain information
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional Back     alignment and domain information
>TIGR00167 cbbA ketose-bisphosphate aldolases Back     alignment and domain information
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed Back     alignment and domain information
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 Back     alignment and domain information
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype Back     alignment and domain information
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein Back     alignment and domain information
>cd04732 HisA HisA Back     alignment and domain information
>PRK07084 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>TIGR00742 yjbN tRNA dihydrouridine synthase A Back     alignment and domain information
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase Back     alignment and domain information
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases Back     alignment and domain information
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 Back     alignment and domain information
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 Back     alignment and domain information
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>PRK06806 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed Back     alignment and domain information
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type Back     alignment and domain information
>TIGR00262 trpA tryptophan synthase, alpha subunit Back     alignment and domain information
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed Back     alignment and domain information
>PLN02460 indole-3-glycerol-phosphate synthase Back     alignment and domain information
>cd02911 arch_FMN Archeal FMN-binding domain Back     alignment and domain information
>PRK09997 hydroxypyruvate isomerase; Provisional Back     alignment and domain information
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed Back     alignment and domain information
>PRK08185 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family Back     alignment and domain information
>PRK10415 tRNA-dihydrouridine synthase B; Provisional Back     alignment and domain information
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase Back     alignment and domain information
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins Back     alignment and domain information
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases Back     alignment and domain information
>PRK07315 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional Back     alignment and domain information
>PRK08091 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative Back     alignment and domain information
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate Back     alignment and domain information
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI Back     alignment and domain information
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed Back     alignment and domain information
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed Back     alignment and domain information
>PRK06256 biotin synthase; Validated Back     alignment and domain information
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain Back     alignment and domain information
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Back     alignment and domain information
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form Back     alignment and domain information
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain Back     alignment and domain information
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative Back     alignment and domain information
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 Back     alignment and domain information
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain Back     alignment and domain information
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain Back     alignment and domain information
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1 Back     alignment and domain information
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed Back     alignment and domain information
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] Back     alignment and domain information
>PRK09856 fructoselysine 3-epimerase; Provisional Back     alignment and domain information
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain Back     alignment and domain information
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed Back     alignment and domain information
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway Back     alignment and domain information
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated Back     alignment and domain information
>TIGR02814 pfaD_fam PfaD family protein Back     alignment and domain information
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>PRK08610 fructose-bisphosphate aldolase; Reviewed Back     alignment and domain information
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] Back     alignment and domain information
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure Back     alignment and domain information
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein Back     alignment and domain information
>PRK07695 transcriptional regulator TenI; Provisional Back     alignment and domain information
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional Back     alignment and domain information
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain Back     alignment and domain information
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 Back     alignment and domain information
>PRK09989 hypothetical protein; Provisional Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01334 modD putative molybdenum utilization protein ModD Back     alignment and domain information
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional Back     alignment and domain information
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK14057 epimerase; Provisional Back     alignment and domain information
>PLN02334 ribulose-phosphate 3-epimerase Back     alignment and domain information
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed Back     alignment and domain information
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E Back     alignment and domain information
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] Back     alignment and domain information
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional Back     alignment and domain information
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase Back     alignment and domain information
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family Back     alignment and domain information
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13523 NADPH dehydrogenase NamA; Provisional Back     alignment and domain information
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>PRK07709 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>PTZ00372 endonuclease 4-like protein; Provisional Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase Back     alignment and domain information
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional Back     alignment and domain information
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain Back     alignment and domain information
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated Back     alignment and domain information
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK12331 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>PRK05835 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit Back     alignment and domain information
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed Back     alignment and domain information
>PRK12656 fructose-6-phosphate aldolase; Reviewed Back     alignment and domain information
>PRK08883 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK08745 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK14024 phosphoribosyl isomerase A; Provisional Back     alignment and domain information
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase Back     alignment and domain information
>PRK01362 putative translaldolase; Provisional Back     alignment and domain information
>PRK06852 aldolase; Validated Back     alignment and domain information
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 Back     alignment and domain information
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase Back     alignment and domain information
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase Back     alignment and domain information
>PRK14040 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional Back     alignment and domain information
>PLN02535 glycolate oxidase Back     alignment and domain information
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway Back     alignment and domain information
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain Back     alignment and domain information
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>TIGR02660 nifV_homocitr homocitrate synthase NifV Back     alignment and domain information
>PRK08508 biotin synthase; Provisional Back     alignment and domain information
>smart00518 AP2Ec AP endonuclease family 2 Back     alignment and domain information
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated Back     alignment and domain information
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR) Back     alignment and domain information
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family Back     alignment and domain information
>TIGR02708 L_lactate_ox L-lactate oxidase Back     alignment and domain information
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain Back     alignment and domain information
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder Back     alignment and domain information
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>TIGR00433 bioB biotin synthetase Back     alignment and domain information
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional Back     alignment and domain information
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed Back     alignment and domain information
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) Back     alignment and domain information
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate Back     alignment and domain information
>PRK05581 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional Back     alignment and domain information
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM) Back     alignment and domain information
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation Back     alignment and domain information
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PRK06096 molybdenum transport protein ModD; Provisional Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>cd04732 HisA HisA Back     alignment and domain information
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated Back     alignment and domain information
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins Back     alignment and domain information
>CHL00162 thiG thiamin biosynthesis protein G; Validated Back     alignment and domain information
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic Back     alignment and domain information
>PRK14567 triosephosphate isomerase; Provisional Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport Back     alignment and domain information
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family Back     alignment and domain information
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) Back     alignment and domain information
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>PRK12677 xylose isomerase; Provisional Back     alignment and domain information
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit Back     alignment and domain information
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family Back     alignment and domain information
>PLN02389 biotin synthase Back     alignment and domain information
>PRK09197 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins Back     alignment and domain information
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase Back     alignment and domain information
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query749
2p10_A286 Crystal Structure Of A Putative Phosphonopyruvate H 3e-73
>pdb|2P10|A Chain A, Crystal Structure Of A Putative Phosphonopyruvate Hydrolase (Mll9387) From Mesorhizobium Loti Maff303099 At 2.15 A Resolution Length = 286 Back     alignment and structure 
Iteration: 1

 Score =  273 bits (698), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 139/266 (52%), Positives = 174/266 (65%)
Query: 481 ILSKLKYQIDKGLPXXXXXXXXXXXXKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFA 540
           ++ + + +I  G P            K EEAG +DLIV+YNSGR+R AGRGSLAGLL + 
Sbjct: 16  LVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRXAGRGSLAGLLAYG 75
Query: 541 DANAVVLEMANXXXXXXXXXXXXAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFD 600
           +AN +V++ A             AGV GTDPF     FL++L+ IGF GVQNFPTVGL D
Sbjct: 76  NANQIVVDXAREVLPVVRHTPVLAGVNGTDPFXVXSTFLRELKEIGFAGVQNFPTVGLID 135
Query: 601 GNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGLTT 660
           G FRQNLEETG  Y  EVE I +AHK+ LLTTPY F+  +AV  AKAGADI+V H GLTT
Sbjct: 136 GLFRQNLEETGXSYAQEVEXIAEAHKLDLLTTPYVFSPEDAVAXAKAGADILVCHXGLTT 195
Query: 661 SGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSEAEFILKRTKGVHG 720
            G+IGA++  S D+ V  +    +AA  I  D I+L HGGPI++P +A FIL   +G HG
Sbjct: 196 GGAIGARSGKSXDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQGCHG 255
Query: 721 FYGASSMERLPVEQAITSTMRQYKSI 746
           FYGASS ERLP E+AI S    +K+I
Sbjct: 256 FYGASSXERLPAEEAIRSQTLAFKAI 281

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query749
2p10_A286 MLL9387 protein; putative phosphonopyruvate hydrol 1e-140
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 Length = 286 Back     alignment and structure
 Score =  412 bits (1059), Expect = e-140
 Identities = 166/282 (58%), Positives = 209/282 (74%), Gaps = 2/282 (0%)

Query: 470 ARPETLQRT--QAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRM 527
           +    ++R     ++ + + +I  G PIIG GAGTG+SAK EEAG +DLIV+YNSGR+RM
Sbjct: 3   STDTCIKRPTRSELVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRM 62

Query: 528 AGRGSLAGLLPFADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGF 587
           AGRGSLAGLL + +AN +V++MA EVLPVV+  PVLAGV GTDPF  +  FL++L+ IGF
Sbjct: 63  AGRGSLAGLLAYGNANQIVVDMAREVLPVVRHTPVLAGVNGTDPFMVMSTFLRELKEIGF 122

Query: 588 FGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKA 647
            GVQNFPTVGL DG FRQNLEETGM Y  EVEMI +AHK+ LLTTPY F+  +AV MAKA
Sbjct: 123 AGVQNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPYVFSPEDAVAMAKA 182

Query: 648 GADIIVAHMGLTTSGSIGAKTALSLDESVDRVQAIADAAHRINPDAIVLCHGGPISSPSE 707
           GADI+V HMGLTT G+IGA++  S+D+ V  +    +AA  I  D I+L HGGPI++P +
Sbjct: 183 GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPED 242

Query: 708 AEFILKRTKGVHGFYGASSMERLPVEQAITSTMRQYKSISIK 749
           A FIL   +G HGFYGASSMERLP E+AI S    +K+I  +
Sbjct: 243 ARFILDSCQGCHGFYGASSMERLPAEEAIRSQTLAFKAIRRQ 284
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 749
d2p10a1197 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 2e-61
>d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} Length = 197 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Mll9387-like
domain: Uncharacterized protein Mll9387
species: Mesorhizobium loti [TaxId: 381]

 Score =  202 bits (516), Expect = 2e-61
 Identities = 126/191 (65%), Positives = 153/191 (80%)

Query: 479 QAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLP 538
             ++ + + +I  G PIIG GAGTG+SAK EEAG +DLIV+YNSGR+RMAGRGSLAGLL 
Sbjct: 6   SELVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLA 65

Query: 539 FADANAVVLEMANEVLPVVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGL 598
           + +AN +V++MA EVLPVV+  PVLAGV GTDPF  +  FL++L+ IGF GVQNFPTVGL
Sbjct: 66  YGNANQIVVDMAREVLPVVRHTPVLAGVNGTDPFMVMSTFLRELKEIGFAGVQNFPTVGL 125

Query: 599 FDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYAFNEGEAVKMAKAGADIIVAHMGL 658
            DG FRQNLEETGM Y  EVEMI +AHK+ LLTTPY F+  +AV MAKAGADI+V HMGL
Sbjct: 126 IDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPYVFSPEDAVAMAKAGADILVCHMGL 185

Query: 659 TTSGSIGAKTA 669
           TT G+IGA++ 
Sbjct: 186 TTGGAIGARSG 196

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query749
d2p10a1197 Uncharacterized protein Mll9387 {Mesorhizobium lot 100.0
d1yxya1230 Putative N-acetylmannosamine-6-phosphate 2-epimera 98.07
d1hg3a_224 Triosephosphate isomerase {Archaeon Pyrococcus woe 97.95
d1w0ma_226 Triosephosphate isomerase {Thermoproteus tenax [Ta 97.64
d1a53a_247 Indole-3-glycerophosphate synthase, IPGS {Archaeon 97.35
d1y0ea_222 Putative N-acetylmannosamine-6-phosphate 2-epimera 97.33
d1muma_289 2-methylisocitrate lyase {Escherichia coli [TaxId: 97.31
d1s2wa_275 Phosphoenolpyruvate mutase {Blue mussel (Mytilus e 96.52
d1vc4a_254 Indole-3-glycerophosphate synthase, IPGS {Thermus 96.49
d1qopa_267 Trp synthase alpha-subunit {Salmonella typhimurium 95.95
d1piia2254 Indole-3-glycerophosphate synthase, IPGS {Escheric 95.37
d1wa3a1202 KDPG aldolase {Thermotoga maritima [TaxId: 2336]} 94.15
d1i4na_251 Indole-3-glycerophosphate synthase, IPGS {Thermoto 93.64
d1f61a_418 Isocitrate lyase {Mycobacterium tuberculosis [TaxI 93.56
d2flia1217 D-ribulose-5-phosphate 3-epimerase {Streptococcus 93.12
d1tqja_221 D-ribulose-5-phosphate 3-epimerase {Synechocystis 92.24
d1d3ga_367 Dihydroorotate dehydrogenase {Human (Homo sapiens) 92.21
d1vhna_305 Putative flavin oxidoreducatase TM0096 {Thermotoga 88.97
d1geqa_248 Trp synthase alpha-subunit {Archaeon Pyrococcus fu 88.24
d1wbha1213 KDPG aldolase {Escherichia coli [TaxId: 562]} 85.18
d1izca_299 Macrophomate synthase {Macrophoma commelinae [TaxI 84.78
d1mxsa_216 KDPG aldolase {Pseudomonas putida [TaxId: 303]} 84.7
d1juba_311 Dihydroorotate dehydrogenase {Lactococcus lactis, 82.12
d1gtea2312 Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su 81.95
d1rd5a_261 Trp synthase alpha-subunit {Maize (Zea mays) [TaxI 80.47
d1vhca_212 Hypothetical protein HI0047 {Haemophilus influenza 80.45
>d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Mll9387-like
domain: Uncharacterized protein Mll9387
species: Mesorhizobium loti [TaxId: 381]

Probab=100.00  E-value=4e-42  Score=310.04  Aligned_cols=194  Identities=65%  Similarity=1.053  Sum_probs=191.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             44899999999876429986993026312156666359739998425211134886311365556702899996411168
Q 004491          476 QRTQAILSKLKYQIDKGLPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLEMANEVLP  555 (749)
Q Consensus       476 ~~r~~il~~l~~~i~~~~piig~gaGtGlsAk~ae~gGaDlii~ynsGrfR~~G~~SlagllpygdaN~iv~e~~~eilp  555 (749)
                      .+|+|++++||+++++++||++.+++.|||||.+|++|.|+|.+|++|.++++|++|++|+|+|+|+|+.+++++++|++
T Consensus         3 ~tr~e~~~~lr~~l~~~~~l~~~g~~d~lsAklae~aGfdai~~~~~g~~~s~g~~~~~g~l~~~d~~~~~~~~a~~i~~   82 (197)
T d2p10a1           3 PTRSELVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLP   82 (197)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGG
T ss_pred             CCHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCEEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             78999999999998579978971510099999999859989998337999971785110346720779999999999997


Q ss_pred             CCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             88999658840258998778999999998195402317743213326666544229954799899999998398433211
Q 004491          556 VVKEVPVLAGVCGTDPFRRVDYFLKQLESIGFFGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIDKAHKMGLLTTPYA  635 (749)
Q Consensus       556 ~v~~tPViaGv~atDP~~~~~~~l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~G~gy~~EVemi~~A~~~gl~T~~yv  635 (749)
                      ++.++||++++.+.||+.++.+.++++.+.|++||||||+.|.+||++|..+|+.++.+.+|+|++..||..++++.+|.
T Consensus        83 ~v~~iPviaD~dG~g~~~nv~rtv~~~~~aG~agI~~~pk~g~~~g~~~~~~e~a~~~~~~~~d~liiARtda~~~~g~~  162 (197)
T d2p10a1          83 VVRHTPVLAGVNGTDPFMVMSTFLRELKEIGFAGVQNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPYV  162 (197)
T ss_dssp             GCSSSCEEEEECTTCTTCCHHHHHHHHHHHTCCEEEECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECCEE
T ss_pred             HCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHH
T ss_conf             51368668702789850669999999998298388436434676514552099998876468439998988666333688


Q ss_pred             CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf             2989999999616859996257776555565442
Q 004491          636 FNEGEAVKMAKAGADIIVAHMGLTTSGSIGAKTA  669 (749)
Q Consensus       636 f~~eea~~Ma~AGaDiiv~H~GlT~gG~~Ga~~~  669 (749)
                      +..++++++++||||+||+|+|||++|.+|+++.
T Consensus       163 ~Ai~Ra~ay~eAGAD~i~~h~Glt~~~~~g~~~~  196 (197)
T d2p10a1         163 FSPEDAVAMAKAGADILVCHMGLTTGGAIGARSG  196 (197)
T ss_dssp             CSHHHHHHHHHHTCSEEEEECSCC---------C
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC
T ss_conf             8999999999869999997888887766476568
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} Back     information, alignment and structure
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} Back     information, alignment and structure
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} Back     information, alignment and structure
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure