Citrus Sinensis ID: 004493

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------75

MYKTVAYLGKEILGEVEIYPQQQGEGGEGEEKNKKVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSSSTTTLPTSQAAVMPLANMQFPPATSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPSTSDRPHENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEVLYALWLTKF

cccEEEEEccEEEEEEEEEEcccccccccccccccccccEEEEEEccccccccccHHHHHcccccEEEEEEccccccHHHHHHHHHHHHccccEEEEcccccEEEEEEEEcccccccccEEEEEEccccHHHHHHHHHHcccEEEEEcccHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHcHHHHHHcHHHHHHHHHHHcccccccccEEEEEccEEEccccccccccccccEEcccccEEEEEccccccccEEEEEEcccHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHccccccccccccccccEEEccccccccHHHccccccccccEEEEEEcccccccccccccEEEEcccccccccHHHHcccccHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEcccccccccEEHHHHHHHHHHccc

ccEEEEEEccEEEEEEEEEEccccccccccccHHHcccEEEEcccccccccccccEEEEEEccccEEEEEccccccccHHHHHHHHHHHHccEEEEEcccccEEEEEEcccccccccccEEEEEEccccHHHHHHHHHHHcccEEEEEccHHEEEEccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEccccEEEEEEEEEccccccccccccccEEEcccccEEEEEEcccccccEEEEEccccHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHccccccccHHHHHHcEEEcccccccHHHHHcccccccccEEEEEEcccccccccccccEEEEcccccccccHHHHHccccEHEEHHHHHHcccccHHHHHHHHHHHHHHHHEccccHcccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccEEEEEEEEcccHHHHHHHHHHHHHHHHcc

MYKTVAYLGKEIlgeveiypqqqgeggegeeknkKVFDEIRISYFSeasercpplaVLHTITASGIcfkmeskssdniqLHLLHSScirenktavmplglTEELHLVAMYSrnnekqypcfwafsvgsglynscLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAendqvnengkvIKVQSEVVPALSDSHQALVRPLIRLQEkniiltrinpqirdtsvlvRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRlldpesnlintKELLDRIVcvksgsrkslfnvfqdgtchpkmalVIDDrlkvwddkdqprvhvvpafapyyapqaeannaiPVLCVARNIacnvrggffkeFDEGLlqripeisyeddvkdipsppdvsnylvseddaatangikdplsfdgmADAEVERRLKEAIAASATISSAvanldprlapfqytmpsssstttlptsqaavmplanmqfppatslvkplghvgppeqslqsspareegevpeseldpdTRRRLLILQHgmdtrenapseapfpartqmqvsvprvpsrgswfpveeemsprqlnravpkefplnseamqiekhrpphpsffpkienpstsdrphenqrmpkealrRDDRLRLNhtlsdyqsfsgeeiplsrsssssrdvdfesgrdvsstetpsgvLQDIAMKcgtkvefrpalvastELQFSIEVLYALWLTKF

MYKTVAYLgkeilgeveiypqqqgeggegeeknkKVFDEIRISYFseasercppLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLrkistevdpqrIAGMQAEVKRYQDDKNILKQYaendqvnengKVIKVQSEVVPALSDSHQALVRPLIrlqekniiltrinpqirdtsvlvrlrpaWEDLRSYltargrkrfeVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLfnvfqdgtchpKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEIsyeddvkdipspPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSSSTTTLPTSQAAVMPLANMQFPPATSLVKPLGHVGPPEqslqsspareegevpeseldpdtrRRLLILQHGMdtrenapseapfpartqmqvsvprVPSRGSWFPVeeemsprqlnravPKEFPLNSEAMQIEKhrpphpsffpkienpstsdrphenqrmpkealrrddrlrLNHTlsdyqsfsgeeiplsrsssssrdvdfesgrdvsstetpsgvlQDIAMKCGTKVEFRPalvastelqfSIEVLYALWLTKF

MYKTVAYLGKEILGEVEIYPqqqgeggegeeKNKKVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEaiaasatissavaNLDPRLAPFQYtmpsssstttlptsQAAVMPLANMQFPPATSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPSTSDRPHENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLsrsssssrDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEVLYALWLTKF

***TVAYLGKEILGEVEIY****************VFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDP*RIAG*******Y****NILKQYA********GKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYE******************************************************************************************************************************************************************************************************************************************************************************************************VLQDIAMKCGTKVEFRPALVASTELQFSIEVLYALWLT**

***TVAYLGKEILGEVEIYPQ************KKVFDEIRISYFSEASERCPPLAVLHTITASGI******************SSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLR*****************************QYAENDQVNENGKVIKVQSEV***********VRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELL**************FNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIP********************************************************************************************************************************************************************************************************************************************************************************************************PSGVLQDIAMKCGTKVEFRPALVASTELQFSIEVLYALWLTKF

MYKTVAYLGKEILGEVEIYPQ**********KNKKVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYT**********PTSQAAVMPLANMQFPPATSLVKPLG*************************DPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIEN****************ALRRDDRLRLNHTLSDYQS********************************SGVLQDIAMKCGTKVEFRPALVASTELQFSIEVLYALWLTKF

MYKTVAYLGKEILGEVEIYPQQQGEGGEGEEKNKKVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSSSTTTLPTSQAAVMPLANMQFPPATSLVKPLGHVGPP***********EGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVPSRGSWFPVEE**S************************************************************************************************DVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEVLYALWLTKF

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		749	2.2.26 [Sep-21-2011]
Q5YDB6		967	RNA polymerase II C-termi	yes	no	0.975	0.755	0.654	0.0
Q5YDB5		770	RNA polymerase II C-termi	no	no	0.907	0.883	0.477	1e-169
Q03254		732	RNA polymerase II subunit	yes	no	0.146	0.150	0.314	0.0001
Q7TSG2		960	RNA polymerase II subunit	yes	no	0.180	0.140	0.295	0.0001
Q9Y5B0		961	RNA polymerase II subunit	no	no	0.109	0.085	0.329	0.0001

>sp\|Q5YDB6\|CPL1_ARATH RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1	Back alignment and function desciption

 Score =  971 bits (2509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/764 (65%), Positives = 589/764 (77%), Gaps = 33/764 (4%)

Query: 7   YLGKEILGEVEIYP-----QQQGEGGEGEEKNKKVFDE-----IRISYFSEASERCPPLA 56
           + G   LGE+EIYP     QQQ +  +  +K ++   E     IRIS+FS++ ERCPPLA
Sbjct: 10  FHGDGRLGELEIYPSRELNQQQDDVMKQRKKKQREVMELAKMGIRISHFSQSGERCPPLA 69

Query: 57  VLHTITASGICFKME-SKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNE 115
           +L TI++ G+CFK+E S S     L L +SSC+R+NKTAVM LG  EELHLVAMYS N +
Sbjct: 70  ILTTISSCGLCFKLEASPSPAQESLSLFYSSCLRDNKTAVMLLG-GEELHLVAMYSENIK 128

Query: 116 KQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKIST 175
              PCFWAFSV  G+Y+SCL MLNLRCLGIVFDLDETL+VANTMRSFED+I+   R+I+ 
Sbjct: 129 NDRPCFWAFSVAPGIYDSCLVMLNLRCLGIVFDLDETLVVANTMRSFEDKIDGFQRRINN 188

Query: 176 EVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRP 235
           E+DPQR+A + AE+KRYQDDKN+LKQY E+DQV ENG+VIKVQSE+VPALSD+HQ LVRP
Sbjct: 189 EMDPQRLAVIVAEMKRYQDDKNLLKQYIESDQVVENGEVIKVQSEIVPALSDNHQPLVRP 248

Query: 236 LIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYAL 295
           LIRLQEKNIILTRINP IRDTSVLVR+RP+WE+LRSYLTA+GRKRFEVYVCTMAERDYAL
Sbjct: 249 LIRLQEKNIILTRINPMIRDTSVLVRMRPSWEELRSYLTAKGRKRFEVYVCTMAERDYAL 308

Query: 296 EMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDK 355
           EMWRLLDPE NLINT +LL RIVCVKSG +KSLFNVF DGTCHPKMALVIDDRLKVWD+K
Sbjct: 309 EMWRLLDPEGNLINTNDLLARIVCVKSGFKKSLFNVFLDGTCHPKMALVIDDRLKVWDEK 368

Query: 356 DQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYE 415
           DQPRVHVVPAFAPYY+PQAEA  A PVLCVARN+AC VRGGFF++FD+ LL RI EISYE
Sbjct: 369 DQPRVHVVPAFAPYYSPQAEA-AATPVLCVARNVACGVRGGFFRDFDDSLLPRIAEISYE 427

Query: 416 DDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAV 475
           +D +DIPSPPDVS+YLVSEDD +  NG KDPLSFDGMAD EVERRLKEAI+AS+ +  A 
Sbjct: 428 NDAEDIPSPPDVSHYLVSEDDTSGLNGNKDPLSFDGMADTEVERRLKEAISASSAVLPA- 486

Query: 476 ANLDPRL-APFQYTM---------PSSSSTTTLPTSQAAVMPLANMQFPPA-TSLVKPLG 524
           AN+DPR+ AP Q+ M                      A   P    Q P   TS+ K   
Sbjct: 487 ANIDPRIAAPVQFPMASASSVSVPVPVQVVQQAIQPSAMAFPSIPFQQPQQPTSIAK--- 543

Query: 525 HVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQV 584
           H+ P E SLQSSPAREEGEVPESELDPDTRRRLLILQHG DTR+ APSE  FP R  +Q 
Sbjct: 544 HLVPSEPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPAPSEPSFPQRPPVQA 603

Query: 585 SVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPSTS 644
               V SR  WFPVEEEM P Q+ RAV KE+PL+SE + +EKHRP HPSFF KI+N + S
Sbjct: 604 PPSHVQSRNGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEKHRPRHPSFFSKIDNSTQS 663

Query: 645 DRP-HENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVSS 703
           DR  HEN+R PKE+LRRD++LR N+ L D   F GE+   ++SSS + D+DF   R VS+
Sbjct: 664 DRMLHENRRPPKESLRRDEQLRSNNNLPDSHPFYGEDASWNQSSSRNSDLDFLPERSVSA 723

Query: 704 TETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEVLYALWLT 747
           TET + VL  IA+KCG KVE++P+LV+ST+L+FS+E     WL+
Sbjct: 724 TETSADVLHGIAIKCGAKVEYKPSLVSSTDLRFSVEA----WLS 763

Processively dephosphorylates 'Ser-5' but not 'Ser-2' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II. Together with CPL2, required for male gametes fertility. Multifunctional regulator that modulates plant growth, stress, and phytohormones responses. Negative regulator of stress gene transcription involved in abscisic acid (ABA) mediated and jasmonic acid (JA) mediated signaling pathways, NaCl, osmotic stress, wounding, and cold resistance. Regulates negatively the expression of jasmonic acid (JA) biosynthetic genes in response to wounding.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6

>sp\|Q5YDB5\|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3	Back alignment and function description

>sp\|Q03254\|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCP1 PE=1 SV=1	Back alignment and function description

>sp\|Q7TSG2\|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus musculus GN=Ctdp1 PE=1 SV=1	Back alignment and function description

>sp\|Q9Y5B0\|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		749
255555995		978	double-stranded RNA binding protein, put	0.990	0.758	0.762	0.0
356521333		954	PREDICTED: RNA polymerase II C-terminal	0.975	0.766	0.723	0.0
359496595		860	PREDICTED: RNA polymerase II C-terminal	0.903	0.787	0.757	0.0
224076842		967	predicted protein [Populus trichocarpa]	0.982	0.761	0.729	0.0
297742899		788	unnamed protein product [Vitis vinifera]	0.903	0.859	0.757	0.0
356548751		960	PREDICTED: RNA polymerase II C-terminal	0.986	0.769	0.714	0.0
356555137		958	PREDICTED: RNA polymerase II C-terminal	0.975	0.763	0.714	0.0
449433867		803	PREDICTED: RNA polymerase II C-terminal	0.969	0.904	0.727	0.0
147832855		894	hypothetical protein VITISV_004100 [Viti	0.901	0.755	0.724	0.0
356549363		960	PREDICTED: RNA polymerase II C-terminal	0.974	0.760	0.709	0.0

>gi\|255555995\|ref\|XP_002519032.1\| double-stranded RNA binding protein, putative [Ricinus communis] gi\|223541695\|gb\|EEF43243.1\| double-stranded RNA binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1141 bits (2951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/761 (76%), Positives = 651/761 (85%), Gaps = 19/761 (2%)

Query: 1   MYKTVAYLGKEILGEVEIYPQQQGEGGEGEEKNK--------KVFDEI----RISYFSEA 48
           MYK+V Y G E+LGEVEIY QQ+ +  + EE  +        +V DEI    RIS+FS+A
Sbjct: 1   MYKSVVYKGDELLGEVEIYAQQEQKLQQQEELQEQEQELKKKRVIDEILKGIRISHFSQA 60

Query: 49  SERCPPLAVLHTITASGICFKMESKSSDNIQ--LHLLHSSCIRENKTAVMPLGLTEELHL 106
           SERCPPLAVLHTIT +GICFKMESK+S ++   LHLLHSSCI+E+KTAV+ L   EELHL
Sbjct: 61  SERCPPLAVLHTITTNGICFKMESKNSVSLDTPLHLLHSSCIQESKTAVVLLQGGEELHL 120

Query: 107 VAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRI 166
           VAM+SRN+E+QYPCFWAF++ SGLY+SCL MLNLRCLGIVFDLDETLIVANTMRSFEDRI
Sbjct: 121 VAMFSRNDERQYPCFWAFNISSGLYDSCLVMLNLRCLGIVFDLDETLIVANTMRSFEDRI 180

Query: 167 EALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALS 226
           EAL RKISTE+DPQRI+GM +EVKRYQDDK ILKQY +NDQV ENG+VIK Q EVVPALS
Sbjct: 181 EALQRKISTELDPQRISGMLSEVKRYQDDKTILKQYVDNDQVVENGRVIKTQFEVVPALS 240

Query: 227 DSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVC 286
           D+HQ +VRPLIRLQE+NIILTRINPQIRDTSVLVRLRPAWE+LRSYLTARGRKRFEVYVC
Sbjct: 241 DNHQTIVRPLIRLQERNIILTRINPQIRDTSVLVRLRPAWEELRSYLTARGRKRFEVYVC 300

Query: 287 TMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVID 346
           TMAERDYALEMWRLLDPESNLIN+KELLDRIVCVKSG RKSLFNVFQDG CHPKMALVID
Sbjct: 301 TMAERDYALEMWRLLDPESNLINSKELLDRIVCVKSGLRKSLFNVFQDGICHPKMALVID 360

Query: 347 DRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLL 406
           DRLKVWD+KDQPRVHVVPAFAPYYAPQAEANNA+PVLCVARN+ACNVRGGFFKEFDEGLL
Sbjct: 361 DRLKVWDEKDQPRVHVVPAFAPYYAPQAEANNAVPVLCVARNVACNVRGGFFKEFDEGLL 420

Query: 407 QRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIA 466
           QRIPEIS+EDD+ DIPSPPDVSNYLV EDDA T+NG +DPLSFDGMADAEVE+RLKEAI+
Sbjct: 421 QRIPEISFEDDMNDIPSPPDVSNYLVPEDDAFTSNGNRDPLSFDGMADAEVEKRLKEAIS 480

Query: 467 ASATISSAVANLDPRLA-PFQYTMPSSSSTTTLPTSQAAVMPLANMQFPPATSLVKPLGH 525
            S+   S VANLD RL  P QYTM +SSS+  +PTSQ AV+   +MQ P A  LVKPLG 
Sbjct: 481 ISSAFPSTVANLDARLVPPLQYTM-ASSSSIPVPTSQPAVVTFPSMQLPQAAPLVKPLGQ 539

Query: 526 VGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPAR--TQMQ 583
           V P E SLQSSPAREEGEVPESELDPDTRRRLLILQHG D R+ APSE+PFP R    MQ
Sbjct: 540 VVPSEPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQDLRDPAPSESPFPVRPSNSMQ 599

Query: 584 VSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPST 643
           VSVPRV SRG+W PVEEEMSPRQLNRAV +EFP+++E M I+KHRP HPSFFPK+E+   
Sbjct: 600 VSVPRVQSRGNWVPVEEEMSPRQLNRAVTREFPMDTEPMHIDKHRPHHPSFFPKVESSIP 659

Query: 644 SDR-PHENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVS 702
           S+R PHENQR+PK A  +DDRLRLN T+S+YQS SGEE  LSRSSSS+RD+D ES R VS
Sbjct: 660 SERMPHENQRLPKVAPYKDDRLRLNQTMSNYQSLSGEENSLSRSSSSNRDLDVESDRAVS 719

Query: 703 STETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEVLYA 743
           S ETP  VL +I+MKCG KVEF+ +LV S +LQFS+E  +A
Sbjct: 720 SAETPVRVLHEISMKCGAKVEFKHSLVNSRDLQFSVEAWFA 760

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356521333\|ref\|XP_003529311.1\| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|359496595\|ref\|XP_002267987.2\| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224076842\|ref\|XP_002305017.1\| predicted protein [Populus trichocarpa] gi\|222847981\|gb\|EEE85528.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297742899\|emb\|CBI35690.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356548751\|ref\|XP_003542763.1\| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356555137\|ref\|XP_003545893.1\| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|449433867\|ref\|XP_004134718.1\| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Cucumis sativus] gi\|449479317\|ref\|XP_004155567.1\| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain phosphatase-like 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147832855\|emb\|CAN72816.1\| hypothetical protein VITISV_004100 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356549363\|ref\|XP_003543063.1\| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		749
TAIR\|locus:2119053		967	CPL1 "C-terminal domain phosph	0.970	0.751	0.645	2.4e-250

TAIR\|locus:2119053 CPL1 "C-terminal domain phosphatase-like 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2411 (853.8 bits), Expect = 2.4e-250, P = 2.4e-250
 Identities = 488/756 (64%), Positives = 569/756 (75%)

Query:    13 LGEVEIYPXXXXXXXXXXX------KNKKVFD----EIRISYFSEASERCPPLAVLHTIT 62
             LGE+EIYP                 K ++V +     IRIS+FS++ ERCPPLA+L TI+
Sbjct:    16 LGELEIYPSRELNQQQDDVMKQRKKKQREVMELAKMGIRISHFSQSGERCPPLAILTTIS 75

Query:    63 ASGICFKME-SKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCF 121
             + G+CFK+E S S     L L +SSC+R+NKTAVM LG  EELHLVAMYS N +   PCF
Sbjct:    76 SCGLCFKLEASPSPAQESLSLFYSSCLRDNKTAVMLLG-GEELHLVAMYSENIKNDRPCF 134

Query:   122 WAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQR 181
             WAFSV  G+Y+SCL MLNLRCLGIVFDLDETL+VANTMRSFED+I+   R+I+ E+DPQR
Sbjct:   135 WAFSVAPGIYDSCLVMLNLRCLGIVFDLDETLVVANTMRSFEDKIDGFQRRINNEMDPQR 194

Query:   182 IAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQE 241
             +A + AE+KRYQDDKN+LKQY E+DQV ENG+VIKVQSE+VPALSD+HQ LVRPLIRLQE
Sbjct:   195 LAVIVAEMKRYQDDKNLLKQYIESDQVVENGEVIKVQSEIVPALSDNHQPLVRPLIRLQE 254

Query:   242 KNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLL 301
             KNIILTRINP IRDTSVLVR+RP+WE+LRSYLTA+GRKRFEVYVCTMAERDYALEMWRLL
Sbjct:   255 KNIILTRINPMIRDTSVLVRMRPSWEELRSYLTAKGRKRFEVYVCTMAERDYALEMWRLL 314

Query:   302 DPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVH 361
             DPE NLINT +LL RIVCVKSG +KSLFNVF DGTCHPKMALVIDDRLKVWD+KDQPRVH
Sbjct:   315 DPEGNLINTNDLLARIVCVKSGFKKSLFNVFLDGTCHPKMALVIDDRLKVWDEKDQPRVH 374

Query:   362 VVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDI 421
             VVPAFAPYY+PQAEA  A PVLCVARN+AC VRGGFF++FD+ LL RI EISYE+D +DI
Sbjct:   375 VVPAFAPYYSPQAEAA-ATPVLCVARNVACGVRGGFFRDFDDSLLPRIAEISYENDAEDI 433

Query:   422 PSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEXXXXXXXXXXXXXNLDPR 481
             PSPPDVS+YLVSEDD +  NG KDPLSFDGMAD EVERRLKE             N+DPR
Sbjct:   434 PSPPDVSHYLVSEDDTSGLNGNKDPLSFDGMADTEVERRLKEAISASSAVLPAA-NIDPR 492

Query:   482 LA-PFQYXXXXXXXXXX---XXXXQAAVMPLANMQFP--PATSLVKPLG---HVGPPEQS 532
             +A P Q+                 Q A+ P A M FP  P     +P     H+ P E S
Sbjct:   493 IAAPVQFPMASASSVSVPVPVQVVQQAIQPSA-MAFPSIPFQQPQQPTSIAKHLVPSEPS 551

Query:   533 LQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVPSR 592
             LQSSPAREEGEVPESELDPDTRRRLLILQHG DTR+ APSE  FP R  +Q     V SR
Sbjct:   552 LQSSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPAPSEPSFPQRPPVQAPPSHVQSR 611

Query:   593 GSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPSTSDRP-HENQ 651
               WFPVEEEM P Q+ RAV KE+PL+SE + +EKHRP HPSFF KI+N + SDR  HEN+
Sbjct:   612 NGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEKHRPRHPSFFSKIDNSTQSDRMLHENR 671

Query:   652 RMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLXXXXXXXXDVDFESGRDVSSTETPSGVL 711
             R PKE+LRRD++LR N+ L D   F GE+           D+DF   R VS+TET + VL
Sbjct:   672 RPPKESLRRDEQLRSNNNLPDSHPFYGEDASWNQSSSRNSDLDFLPERSVSATETSADVL 731

Query:   712 QDIAMKCGTKVEFRPALVASTELQFSIEVLYALWLT 747
               IA+KCG KVE++P+LV+ST+L+FS+E     WL+
Sbjct:   732 HGIAIKCGAKVEYKPSLVSSTDLRFSVEA----WLS 763


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      749       703   0.00082  121 3  11 22  0.40    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  359 KB (2179 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  64.09u 0.17s 64.26t   Elapsed:  00:00:03
  Total cpu time:  64.09u 0.17s 64.26t   Elapsed:  00:00:03
  Start:  Mon May 20 15:31:08 2013   End:  Mon May 20 15:31:11 2013

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0019204 "nucleotide phosphatase activity" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0004647 "phosphoserine phosphatase activity" evidence=IDA

GO:0016791 "phosphatase activity" evidence=IDA

GO:0009611 "response to wounding" evidence=IMP

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5YDB6	CPL1_ARATH	3, ., 1, ., 3, ., 1, 6	0.6544	0.9759	0.7559	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3.16	0.946
3rd Layer	3.1.3	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00010272001	SubName- Full=Chromosome undetermined scaffold_252, whole genome shotgun sequence; (935 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		749
TIGR02250		156	TIGR02250, FCP1_euk, FCP1-like phosphatase, phosph	1e-12
smart00577		148	smart00577, CPDc, catalytic domain of ctd-like pho	7e-06

>gnl\|CDD\|131304 TIGR02250, FCP1_euk, FCP1-like phosphatase, phosphatase domain	Back alignment and domain information

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 15/98 (15%)

Query: 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIV 318
           L +LRP    L  +L     K +E++V TM  R YA  + +L+DP+          DRI+
Sbjct: 56  LTKLRPF---LHEFLK-EASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFG-----DRII 106

Query: 319 CVK-SGSR--KSLFNVFQDGTCHPKMALVIDDRLKVWD 353
               SGS   KSL  +F        M ++IDDR  VW 
Sbjct: 107 SRDESGSPHTKSLLRLFPADES---MVVIIDDREDVWP 141

This model represents the phosphatase domain of the humanRNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3.This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the pfam03031. Length = 156

>gnl\|CDD\|214729 smart00577, CPDc, catalytic domain of ctd-like phosphatases	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		749
KOG0323		635	consensus TFIIF-interacting CTD phosphatases, incl	100.0
TIGR02250		156	FCP1_euk FCP1-like phosphatase, phosphatase domain	99.95
PF03031		159	NIF: NLI interacting factor-like phosphatase; Inte	99.8
TIGR02251		162	HIF-SF_euk Dullard-like phosphatase domain. This d	99.8
KOG1605		262	consensus TFIIF-interacting CTD phosphatase, inclu	99.61
smart00577		148	CPDc catalytic domain of ctd-like phosphatases.	99.6
COG5190		390	FCP1 TFIIF-interacting CTD phosphatases, including	99.46
TIGR02245		195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	99.35
COG5190		390	FCP1 TFIIF-interacting CTD phosphatases, including	98.05
TIGR01489		188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	97.95
TIGR02253		221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	97.84
PF13419		176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	97.81
KOG2832		393	consensus TFIIF-interacting CTD phosphatase, inclu	97.79
PLN02770		248	haloacid dehalogenase-like hydrolase family protei	97.76
TIGR01685		174	MDP-1 magnesium-dependent phosphatase-1. This mode	97.69
TIGR01449		213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	97.65
PRK13288		214	pyrophosphatase PpaX; Provisional	97.61
TIGR01454		205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	97.54
TIGR01548		197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	97.53
TIGR01509		183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	97.52
TIGR01993		184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	97.51
TIGR01488		177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	97.51
PLN03243		260	haloacid dehalogenase-like hydrolase; Provisional	97.49
TIGR01549		154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	97.43
cd01427		139	HAD_like Haloacid dehalogenase-like hydrolases. Th	97.39
PRK13223		272	phosphoglycolate phosphatase; Provisional	97.38
PRK13222		226	phosphoglycolate phosphatase; Provisional	97.38
TIGR01491		201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	97.38
PRK13225		273	phosphoglycolate phosphatase; Provisional	97.35
PRK10826		222	2-deoxyglucose-6-phosphatase; Provisional	97.35
PLN02954		224	phosphoserine phosphatase	97.32
TIGR00338		219	serB phosphoserine phosphatase SerB. Phosphoserine	97.32
PLN02575		381	haloacid dehalogenase-like hydrolase	97.31
TIGR01428		198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	97.3
PRK11587		218	putative phosphatase; Provisional	97.26
PLN02940		382	riboflavin kinase	97.24
PRK13226		229	phosphoglycolate phosphatase; Provisional	97.24
TIGR03351		220	PhnX-like phosphonatase-like hydrolase. This clade	97.24
TIGR01422		253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	97.24
TIGR02252		203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	97.23
COG0546		220	Gph Predicted phosphatases [General function predi	97.2
TIGR01990		185	bPGM beta-phosphoglucomutase. The enzyme from L. l	97.12
PRK10725		188	fructose-1-P/6-phosphogluconate phosphatase; Provi	97.02
COG1011		229	Predicted hydrolase (HAD superfamily) [General fun	97.01
PRK13478		267	phosphonoacetaldehyde hydrolase; Provisional	96.93
PRK09552		219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	96.79
TIGR02247		211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	96.74
PRK10563		221	6-phosphogluconate phosphatase; Provisional	96.72
PRK13582		205	thrH phosphoserine phosphatase; Provisional	96.61
TIGR03333		214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	96.6
TIGR01533		266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	96.4
PHA02597		197	30.2 hypothetical protein; Provisional	96.33
PHA03398		303	viral phosphatase superfamily protein; Provisional	96.26
PRK09456		199	?-D-glucose-1-phosphatase; Provisional	96.13
TIGR01684		301	viral_ppase viral phosphatase. These proteins also	96.07
PRK08238		479	hypothetical protein; Validated	95.84
COG0560		212	SerB Phosphoserine phosphatase [Amino acid transpo	95.83
TIGR02137		203	HSK-PSP phosphoserine phosphatase/homoserine phosp	95.74
COG4996		164	Predicted phosphatase [General function prediction	95.69
PRK10748		238	flavin mononucleotide phosphatase; Provisional	95.69
PLN02919		1057	haloacid dehalogenase-like hydrolase family protei	95.6
TIGR01672		237	AphA HAD superfamily (subfamily IIIB) phosphatase,	95.53
COG0637		221	Predicted phosphatase/phosphohexomutase [General f	95.47
PF06888		234	Put_Phosphatase: Putative Phosphatase; InterPro: I	95.22
TIGR01490		202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	95.19
TIGR01686		320	FkbH FkbH-like domain. The C-terminal portion of t	95.16
PRK11133		322	serB phosphoserine phosphatase; Provisional	95.01
KOG3109		244	consensus Haloacid dehalogenase-like hydrolase [Ge	94.91
TIGR01681		128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	94.6
PRK11590		211	hypothetical protein; Provisional	94.53
TIGR01664		166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	94.52
TIGR02254		224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	94.19
KOG0323		635	consensus TFIIF-interacting CTD phosphatases, incl	94.09
PRK14988		224	GMP/IMP nucleotidase; Provisional	94.09
PRK11009		237	aphA acid phosphatase/phosphotransferase; Provisio	93.93
PRK09449		224	dUMP phosphatase; Provisional	92.96
PRK06698		459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	91.09
TIGR02009		185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	90.68
PF12710		192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	90.35
PF12689		169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	89.55
TIGR01691		220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	89.26
smart00559		140	Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of	87.63
PLN02779		286	haloacid dehalogenase-like hydrolase family protei	87.21
TIGR01261		161	hisB_Nterm histidinol-phosphatase. This model desc	86.41
PF05152		297	DUF705: Protein of unknown function (DUF705); Inte	85.72
TIGR01493		175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	84.75
PF08282		254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	83.66
TIGR01482		225	SPP-subfamily Sucrose-phosphate phosphatase subfam	82.46
PLN02811		220	hydrolase	82.17
PHA02530		300	pseT polynucleotide kinase; Provisional	81.0

>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]	Back alignment and domain information

Probab=100.00  E-value=2e-65  Score=570.13  Aligned_cols=507  Identities=28%  Similarity=0.366  Sum_probs=415.2

Q ss_pred             ccccceEEeeeccCCCCCCchhhhhhhcccceeEeeccCCCC--cHHHHHHHHHhhhcccceEEecCCCceeEEEEeeec
Q 004493           35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSD--NIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSR  112 (749)
Q Consensus        35 ~~~~~i~i~~~~~~~erc~pl~vlh~ia~~~~~~~~~~~~~~--~~~l~~lH~~c~~enKtaVv~~~~~~ElhLvam~s~  112 (749)
                      .+..++++.+||...|+|+++|++-+++.++++++.+++...  +.-+...++.|..+.++|||..+ .++.|+|||.+.
T Consensus         4 ~~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~v~~~-~~~~~~v~~~~~   82 (635)
T KOG0323|consen    4 QPGPEERREAFSIVIERSPDLAELTALASGASDGVLESSDDSLVEKDLESFVAICRSKVEGAVVLLG-RDLEKKVALISG   82 (635)
T ss_pred             cCCCcchhhhhhhhhccCcchhhhhhhhhhccccccccccccchhhcccchhheecccccchhhccc-cchhhhhccccc
Confidence            345559999999999999999999999999999999988554  66689999999999999999999 899999999999


Q ss_pred             CCCCCccEEEEEeeccchhHHHHHHhhcceeeEEEeCcchhhhhccccchHHHHHHHHhhhcCCCChhhhhhhHHHHHHh
Q 004493          113 NNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRY  192 (749)
Q Consensus       113 ~~~~~~p~Fw~f~v~~g~y~~~~~lL~~R~L~lVfDLDeTLI~A~T~~sfe~ri~~l~~~~~~~~dP~r~~~~~~evkr~  192 (749)
                      .-.. .+|||+|.|..|+|+.|+.+|+.+|...++||++|++.+++|.+|.++|.+...||.+..           ++++
T Consensus        83 ~~~~-~~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------L~lv  150 (635)
T KOG0323|consen   83 VSSS-TSCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKK-----------LHLV  150 (635)
T ss_pred             cccc-cCCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhc-----------ceee
Confidence            8644 699999999999999999999999999999999999999999999999999999997664           7888


Q ss_pred             hhhHHHHHHHhhcCccccCCeEEEeecccccCCCCcccccccceeeccccceeeeecCCCCCCceEEEeeCCChhhHHHH
Q 004493          193 QDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSY  272 (749)
Q Consensus       193 q~D~~lL~qy~~~d~V~~nG~~~k~q~E~~p~l~dg~~~v~RpvIRl~~~n~~ltRInP~~r~ts~~VKLRPgv~ELr~F  272 (749)
                      +++...|.+|+..+.+..+++-.+.+.+.+                  ..|..+++|+|..+.++|||||||+|+|   |
T Consensus       151 ~Dld~tllh~~~~~~l~e~~~~l~~~~~~~------------------~sn~dl~~~~~~~~~~~~~vKlRP~~~e---f  209 (635)
T KOG0323|consen  151 LDLDHTLLHTILKSDLSETEKYLKEEAESV------------------ESNKDLFRFNPLGHDTEYLVKLRPFVHE---F  209 (635)
T ss_pred             hhhhhHHHHhhccchhhhhhhhcccccccc------------------cccccceeecccCCCceEEEEeCccHHH---H
Confidence            999999999999999999998887777654                  3478899999999999999999999999   9


Q ss_pred             HhhhccccEEEEEEeCCcHHHHHHHHHhcCCCCCcccccccCCcEEEccCC---CccchhhhccCCCCCCcEEEEEcCCc
Q 004493          273 LTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLFNVFQDGTCHPKMALVIDDRL  349 (749)
Q Consensus       273 L~a~~sk~FELyVyTmGtR~YA~eI~rLLDPdg~LFg~~~l~~RIISresg---~~KsL~~LFp~g~c~~~mvVIIDDR~  349 (749)
                      |+ +++++|||||||||+|+||++||++|||+|+||+     +|||||+++   ..++|..+|+   |+++||||||||.
T Consensus       210 L~-~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~-----dRIisrde~~~~kt~dL~~~~p---~g~smvvIIDDr~  280 (635)
T KOG0323|consen  210 LK-EANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFG-----DRIISRDESPFFKTLDLVLLFP---CGDSMVVIIDDRS  280 (635)
T ss_pred             HH-HHHhhceeEEEeccchHHHHHHHHHhCCCCcccc-----ceEEEecCCCcccccccccCCC---CCCccEEEEeCcc
Confidence            99 9999999999999999999999999999999999     999999766   3456666666   9999999999999


Q ss_pred             ccCCCCCCCCeEEecccCCCCCchhhhcccCchHHHHHHHHhhccccchhchhhhhhhccccccccCcCCCCCCCCCccc
Q 004493          350 KVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSN  429 (749)
Q Consensus       350 dVW~~~~qn~I~vV~~Y~pf~~~q~E~~~~~p~L~~al~vL~~Vh~~FFk~fDe~l~~ri~ev~~e~~~~~~~~~pDV~n  429 (749)
                      +||+++++ |+++|.+|.||.. +++.+ ..|.++.+++++|.+++.||+++|+.+..+|.++-|+++-.+.+..+++  
T Consensus       281 dVW~~~~~-nLI~i~~y~yF~~-~gd~n-ap~~~~~~~~~~~~~~~~~~k~~~~s~~~~~~~~~~~~~~~~~~~~~~~--  355 (635)
T KOG0323|consen  281 DVWPDHKR-NLIQIAPYPYFSG-QGDIN-APPPLHVLRNVACSVRGAFFKEFDPSLKSRISEVRYEDDDESNPTSYSV--  355 (635)
T ss_pred             ccccCCCc-ceEEeeeeecccC-ccccc-CCcccccccchhcccccccccccCcccccccccccccccccccCccccc--
Confidence            99999975 5668999987763 33322 2278999999999999999999999999999999999999999999999  


Q ss_pred             eeeccccccccCCCCCCCCCCCCchHHHHHHhhhhhhhhccccccccccCCCCCCCcccccCCCCCCCccCCCceeeccC
Q 004493          430 YLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSSSTTTLPTSQAAVMPLA  509 (749)
Q Consensus       430 ~l~~e~~~~~~~g~~~~~~~~gm~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~p~~~~~~~~  509 (749)
                               -++||..++.+|||.+.                                     +| +             
T Consensus       356 ---------~~~~~~~p~~~~~~~~~-------------------------------------~~-~-------------  375 (635)
T KOG0323|consen  356 ---------ELSANPGPLKQDGMDEF-------------------------------------VP-E-------------  375 (635)
T ss_pred             ---------ccccccCcccccccccc-------------------------------------cc-c-------------
Confidence                     47888888899999887                                     01 0             


Q ss_pred             ccCCCCCccccccccccCCCCCCCCCCcccccCCCCCCCCChhhhhhhhhhccCCCcCCCCCCCCCCCCCCCCcccCCcc
Q 004493          510 NMQFPPATSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRV  589 (749)
Q Consensus       510 n~~~~~~~~~~~pl~~~~~~~Psl~gsPareegevpeselDpDtrrRLLilqHGqD~R~~~~~epP~p~r~p~q~s~~~v  589 (749)
                                                           .                                          
T Consensus       376 -------------------------------------~------------------------------------------  376 (635)
T KOG0323|consen  376 -------------------------------------E------------------------------------------  376 (635)
T ss_pred             -------------------------------------c------------------------------------------
Confidence                                                 0                                          


Q ss_pred             CCCCCceeccccCCcccCCCCCCCCCCCCCcccc-cccCCCCCCCCCCCCCCCCCCCC-ccccccCCcccccchhhhhcc
Q 004493          590 PSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQ-IEKHRPPHPSFFPKIENPSTSDR-PHENQRMPKEALRRDDRLRLN  667 (749)
Q Consensus       590 q~~g~W~~VEeem~p~~lnr~~~~~~p~~s~~~~-~~k~~~~hps~~~~~e~~~~sdr-~~~~qr~p~~~~~~ed~~~~N  667 (749)
                              +.+++.+.+..+..+.+.+.++...+ ..+..+-|+.||.+.+  ...+. .+.+-|.......+.....-|
T Consensus       377 --------~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~~~--~~~e~~~~~Dvr~~i~~~~~~v~~~~~  446 (635)
T KOG0323|consen  377 --------NAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAKYD--EVEETLESPDVRLLIPELRTKVLKGSQ  446 (635)
T ss_pred             --------cchhhcccccccccccccccchhHHHHhhhhcccchhhhhccc--cccccccCCChhhhhhhhhhHHhhccc
Confidence                    23333333333333333344444444 3456889999999865  22333 455445544444444444445


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCccccCCcccCCCCCchHHHHHHHhhhCCeeeeecccccccccchhhhhhhhh
Q 004493          668 HTLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEVLYAL  744 (749)
Q Consensus       668 ~~~~~~~sf~ge~~~~~~~ss~~r~~~~e~g~~~~~~~~s~gvLqEI~~kC~sKVEfrs~l~~s~dLqFSvEv~~~~  744 (749)
                      -..|+-+|+.....+      +......-+-+....+.++.-++|.||.+||++++|+..++.+++++|+.++|.++
T Consensus       447 ~vfSg~~P~~~~~~~------s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~  517 (635)
T KOG0323|consen  447 IVFSGLHPTGSTDES------ADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKVYKAVVSGSAKVVNAAWLWRSL  517 (635)
T ss_pred             eeecccccCcCCcch------hhhhhhhhcccceecccccchhhhHHhhccCcceeeccccccceeEechhHHHHHH
Confidence            556666676554333      11222222233555778999999999999999999999999999999999999886

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain	Back alignment and domain information

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear	Back alignment and domain information

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain	Back alignment and domain information

>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]	Back alignment and domain information

>smart00577 CPDc catalytic domain of ctd-like phosphatases	Back alignment and domain information

>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]	Back alignment and domain information

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245	Back alignment and domain information

>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]	Back alignment and domain information

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase	Back alignment and domain information

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253	Back alignment and domain information

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A	Back alignment and domain information

>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]	Back alignment and domain information

>PLN02770 haloacid dehalogenase-like hydrolase family protein	Back alignment and domain information

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1	Back alignment and domain information

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic	Back alignment and domain information

>PRK13288 pyrophosphatase PpaX; Provisional	Back alignment and domain information

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein	Back alignment and domain information

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548	Back alignment and domain information

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED	Back alignment and domain information

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase	Back alignment and domain information

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like	Back alignment and domain information

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional	Back alignment and domain information

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E	Back alignment and domain information

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases	Back alignment and domain information

>PRK13223 phosphoglycolate phosphatase; Provisional	Back alignment and domain information

>PRK13222 phosphoglycolate phosphatase; Provisional	Back alignment and domain information

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal	Back alignment and domain information

>PRK13225 phosphoglycolate phosphatase; Provisional	Back alignment and domain information

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional	Back alignment and domain information

>PLN02954 phosphoserine phosphatase	Back alignment and domain information

>TIGR00338 serB phosphoserine phosphatase SerB	Back alignment and domain information

>PLN02575 haloacid dehalogenase-like hydrolase	Back alignment and domain information

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II	Back alignment and domain information

>PRK11587 putative phosphatase; Provisional	Back alignment and domain information

>PLN02940 riboflavin kinase	Back alignment and domain information

>PRK13226 phosphoglycolate phosphatase; Provisional	Back alignment and domain information

>TIGR03351 PhnX-like phosphonatase-like hydrolase	Back alignment and domain information

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase	Back alignment and domain information

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase	Back alignment and domain information

>COG0546 Gph Predicted phosphatases [General function prediction only]	Back alignment and domain information

>TIGR01990 bPGM beta-phosphoglucomutase	Back alignment and domain information

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional	Back alignment and domain information

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]	Back alignment and domain information

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional	Back alignment and domain information

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed	Back alignment and domain information

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase	Back alignment and domain information

>PRK10563 6-phosphogluconate phosphatase; Provisional	Back alignment and domain information

>PRK13582 thrH phosphoserine phosphatase; Provisional	Back alignment and domain information

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase	Back alignment and domain information

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family	Back alignment and domain information

>PHA02597 30	Back alignment and domain information

>PHA03398 viral phosphatase superfamily protein; Provisional	Back alignment and domain information

>PRK09456 ?-D-glucose-1-phosphatase; Provisional	Back alignment and domain information

>TIGR01684 viral_ppase viral phosphatase	Back alignment and domain information

>PRK08238 hypothetical protein; Validated	Back alignment and domain information

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein	Back alignment and domain information

>COG4996 Predicted phosphatase [General function prediction only]	Back alignment and domain information

>PRK10748 flavin mononucleotide phosphatase; Provisional	Back alignment and domain information

>PLN02919 haloacid dehalogenase-like hydrolase family protein	Back alignment and domain information

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672	Back alignment and domain information

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]	Back alignment and domain information

>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []	Back alignment and domain information

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490	Back alignment and domain information

>TIGR01686 FkbH FkbH-like domain	Back alignment and domain information

>PRK11133 serB phosphoserine phosphatase; Provisional	Back alignment and domain information

>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]	Back alignment and domain information

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC	Back alignment and domain information

>PRK11590 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase	Back alignment and domain information

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254	Back alignment and domain information

>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]	Back alignment and domain information

>PRK14988 GMP/IMP nucleotidase; Provisional	Back alignment and domain information

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional	Back alignment and domain information

>PRK09449 dUMP phosphatase; Provisional	Back alignment and domain information

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated	Back alignment and domain information

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase	Back alignment and domain information

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B	Back alignment and domain information

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea	Back alignment and domain information

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase	Back alignment and domain information

>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen	Back alignment and domain information

>PLN02779 haloacid dehalogenase-like hydrolase family protein	Back alignment and domain information

>TIGR01261 hisB_Nterm histidinol-phosphatase	Back alignment and domain information

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins	Back alignment and domain information

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase	Back alignment and domain information

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []	Back alignment and domain information

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily	Back alignment and domain information

>PLN02811 hydrolase	Back alignment and domain information

>PHA02530 pseT polynucleotide kinase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		749
3ef1_A		442	The Structure Of Fcp1, An Essential Rna Polymerase		3e-04
3ef0_A		372	The Structure Of Fcp1, An Essential Rna Polymerase		5e-04

>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 442

Back alignment and structure

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Query: 281 FEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK-SGS--RKSLFNVFQDGTC 337
           +E+++ TM  + YA E+ +++DP   L       DR++    SGS  +KSL  +F    C
Sbjct: 99  YELHIYTMGTKAYAKEVAKIIDPTGKLFQ-----DRVLSRDDSGSLAQKSLRRLF---PC 150
Query: 338 HPKMALVIDDRLKVWD 353
              M +VIDDR  VWD
Sbjct: 151 DTSMVVVIDDRGDVWD 166

PyMOL of 3ef1

>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 372

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		749
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
3ef1_A		442	RNA polymerase II subunit A C-terminal domain phos	2e-08
3ef0_A		372	RNA polymerase II subunit A C-terminal domain phos	1e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 75.7 bits (185), Expect = 4e-14
 Identities = 66/500 (13%), Positives = 137/500 (27%), Gaps = 159/500 (31%)

Query: 161 SFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQV----------NE 210
            ++D +           D + +  M   +   ++  +I+                    E
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76

Query: 211 NGKVIKVQSEVVPALSDSHQALVRPL-IRLQEKNIILTR----INPQIRDTSVLV----- 260
                 VQ  V   L  +++ L+ P+    ++ +++        +    D  V       
Sbjct: 77  EM----VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 261 RLRPAWEDLRSYLTARGRKRFEVYVCTM---------AE--RDYALEM-------W---- 298
           RL+P  + LR  L    R    V +  +          +    Y ++        W    
Sbjct: 133 RLQPYLK-LRQALL-ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 299 RLLDPESNLINTKELLDRIVC-------------VKSGSRKSLFNVFQDGTCHPKMALVI 345
               PE+ L   ++LL +I               ++  S ++          +    LV+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 346 DDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIAC-------------- 391
            +   V + K         AF          N +  +L   R                  
Sbjct: 251 LN---VQNAK------AWNAF----------NLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 392 -NVRGGFFKEFDEGLLQRIPEISYED---DVKDIPSPPDVSNYLVSE---DDAATANGIK 444
            +       +  + LL +  +   +D   +V    +P  +S  +++E   D  AT +  K
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLS--IIAESIRDGLATWDNWK 348

Query: 445 DPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSSSTTTLPTSQAA 504
             ++ D         +L   I +S      +  L+P      +          L     +
Sbjct: 349 H-VNCD---------KLTTIIESS------LNVLEPAEYRKMFDR--------L-----S 379

Query: 505 VMPLANMQFPPATSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQ--- 561
           V       FPP             P   L               ++   +  L+  Q   
Sbjct: 380 V-------FPP---------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 562 -----HG--MDTRENAPSEA 574
                    ++ +    +E 
Sbjct: 424 STISIPSIYLELKVKLENEY 443

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442	Back alignment and structure

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		749
d1ta0a_		181	c.108.1.16 (A:) Carboxy-terminal domain RNA polyme	7e-04

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 181	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 248 RINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNL 307
            +        V V  RP  ++    +     + FE  + T +   YA  +  LLD     
Sbjct: 42  PVEIDGVVHQVYVLKRPHVDEFLQRM----GELFECVLFTASLAKYADPVADLLDKW-GA 96

Query: 308 INTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVW 352
              +   +  V  +    K L  + +D     +  L++D+    +
Sbjct: 97  FRARLFRESCVFHRGNYVKDLSRLGRD----LRRVLILDNSPASY 137

PyMOL of d1ta0a_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		749
d1ta0a_		181	Carboxy-terminal domain RNA polymerase II polypept	99.89
d2go7a1		204	Hypothetical protein SP2064 {Streptococcus pneumon	97.61
d1u7pa_		164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	97.47
d1x42a1		230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	97.24
d2hsza1		224	Phosphoglycolate phosphatase Gph {Haemophilus somn	97.1
d2ah5a1		210	predicted phosphatase SP0104 {Streptococcus pneumo	96.91
d2hdoa1		207	Phosphoglycolate phosphatase {Lactobacillus planta	96.82
d2hcfa1		228	Hypothetical protein CT1708 {Chlorobium tepidum [T	96.7
d1nnla_		217	Phosphoserine phosphatase {Human (Homo sapiens) [T	96.39
d2feaa1		226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	96.21
d1swva_		257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	96.14
d1te2a_		218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	95.47
d2fi1a1		187	Putative hydrolase SP0805 {Streptococcus pneumonia	95.03
d1zs9a1		253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	94.43
d2fdra1		222	Hypothetical protein Atu0790 {Agrobacterium tumefa	93.37
d1qq5a_		245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	92.77
d1ltqa1		149	Polynucleotide kinase, phosphatase domain {Bacteri	91.07
d2gfha1		247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	90.38
d2b0ca1		197	Putative phosphatase YihX {Escherichia coli [TaxId	84.09
d1zrna_		220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	83.52
d1o08a_		221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	82.12

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.9e-24  Score=167.23  Aligned_cols=122  Identities=18%  Similarity=0.131  Sum_probs=92.0

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHCCC
Q ss_conf             83489960877066788874620265799999678278999999830989985355566790787058974343333168
Q 004493          255 DTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQD  334 (749)
Q Consensus       255 ~ts~~VKLRPgv~ELr~FL~ak~sk~FELyVyTmGtR~YA~eIlrLLDPdg~LFg~~~l~~RIISresg~~KsL~~LFp~  334 (749)
                      ...+++++|||+++   ||+ .++++||++|||+|++.||..|++.|||.+.++. ...++++.+.+.+..|+|..+.. 
T Consensus        49 ~~~~~v~~RP~l~e---FL~-~l~~~yei~I~Ta~~~~YA~~il~~ldp~~~~~~-~~~r~~c~~~~~~~~KdL~~l~~-  122 (181)
T d1ta0a_          49 VHQVYVLKRPHVDE---FLQ-RMGELFECVLFTASLAKYADPVADLLDKWGAFRA-RLFRESCVFHRGNYVKDLSRLGR-  122 (181)
T ss_dssp             EEEEEEEECTTHHH---HHH-HHHHHSEEEEECSSCHHHHHHHHHHHCSSCCEEE-EECGGGSEEETTEEECCGGGSCS-
T ss_pred             EEEEEEECCCCHHH---HHH-HHHHCEEEEEECCCCHHHHHHHHHHHCCCCCEEE-EEEEEEEEECCCCCCCCHHHCCC-
T ss_conf             13347863988999---999-9986008999838717789999998652773658-99840255228855252755198-


Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf             998996799992983259999999938822557888824554135733899999884102
Q 004493          335 GTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVR  394 (749)
Q Consensus       335 g~~~~~mvVIIDDR~dVW~~~~qn~I~vV~~Y~pf~~~q~E~~~~~p~L~~al~vL~~Vh  394 (749)
                         +.+.+|||||++++|..+..|.| .|++|.  ..+      .+-.|..+..+|..++
T Consensus       123 ---~l~~vvivDd~~~~~~~~~~N~I-~I~~f~--~~~------~D~eL~~l~~~L~~l~  170 (181)
T d1ta0a_         123 ---DLRRVLILDNSPASYVFHPDNAV-PVASWF--DNM------SDTELHDLLPFFEQLS  170 (181)
T ss_dssp             ---CGGGEEEECSCGGGGTTCGGGBC-CCCCCS--SCT------TCCHHHHHHHHHHHHT
T ss_pred             ---CHHHEEEECCCHHHHHCCCCCEE-EECCCC--CCC------CCHHHHHHHHHHHHHC
T ss_conf             ---88893887288666404834765-706768--998------8277999999999976

PyMOL of d1ta0a_

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}	Back information, alignment and structure

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}	Back information, alignment and structure

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}	Back information, alignment and structure

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}	Back information, alignment and structure

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}	Back information, alignment and structure

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure