Citrus Sinensis ID: 004502

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------75
MDISQQEFQERKREFYDFLELSIYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTGVPTGSVYPTRDEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEMEEREQERQREQEKNPRAEHPGGNDRADHSTNDNERMEAFNSVFGQHMRANRLDLITITELEEIVNTGMDAHYSRAEITFLLEKLQDENRVMIADGIVHMIS
ccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccEEEEEcHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccccccccccccccccEEEEEEEEEEcccccccEEEEEEEccccccEEEEEEEcccccccccccccccccccccccEEEEccccEEEEcEEEEEEcccccccccccccEEEEEEEcccccccccccEEEEEEEEEccccccccccccEEEEEEEEEEEEEcccccccccccHHHHHHHHHHHccccHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccEEEEccccHHHHHHHHHHHHHcccEEEEcccccccccccEEEEEccccccEEEcccEEEEccccEEccccccccccccHHHHHHHHccccEEEEEccHHHcccHHHHHHHHcccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHHHHHcccEEEEccEEEEcc
ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccEEEEEHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHccEEEEEEccccccccccHcHHcHHHHccEEEEEEEEEEccccccEEEEEEEEccccccEccccEEcccccccccccccccccccccccEEEEccEEEEEccEEEEEEcccccccccccccccEEEEcccHHHccccccEEEEEEEEEEcccccccccccEEEEEEEEHcEEEcccccccccccHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccEEEccEEEEEEccccHHHHHHHHHHHHHcccEEEccccccccccEEEEEccccccccEEEEHHHHEEHcccEEEEcccccccHHHHHHHHHHHHHccEEHHHccEEEEEccEEEEEEEcccccccccccccccHHccccccHHHHccEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHcccHHHcccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHHHHccccEEEEccEEEEEc
MDISQQEFQERKREFYDFLELSIYQDEIKAMINHKRCRLIVNISDlyafredlpprllknpveyLQPFCDAatdwarnidpkylkegehilvgfegpfvsrcvtprdlLSQFIGSMVCVEGIVTkcslvrpkvvksvhycpttgsfltreyrditsntgvptgsvyptrdehgnLLVTEyglckykdhqtlsvqevpeksapgqlprtvdviveddlvdsckpgdrvaIVGTykalpgkskgsvngVFRTVLIANNVSllnkeanapiytpedlKSIKKIAERDdtfdllgnslapsiyghsWIKKAVILLMLGGVeknlkngthlrgdinmmmvgdpsVAKSQLLRAIMNIAplaisttgrgssgvgltaavtsdqetGERRLEAGAMVLADRGvvcidefdkmndqDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVaaanpiygtydrsltptkniglpdsllsRFDLLFIVLdqmdpdidrRISDHVLRMHRyrsvmdggeggldgssrygredevdtdaSVFVKYNrmlhgkrtqrgqkrdTLTIQFLKKYIHYAKhriqpeltdEASEQIATTYAELRnsssnaktggtlpiTARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEMEEREQERQREqeknpraehpggndradhstndneRMEAFNSVFGQHMRANRLDLITITELEEIVNTGMDAHYSRAEITFLLEKLQDENRVMIADGIVHMIS
MDISQQEFQERKREFYDFLELSIYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCslvrpkvvksvhycpttgsfltreyrditsntgvptgsvyptrdEHGNLLVTEYGLCKYKDHQTLSVQevpeksapgqlprtVDVIVEDdlvdsckpgdRVAIVGtykalpgkskgsvnGVFRTVLIANnvsllnkeanapiytpedlkSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAIsttgrgssgvgLTAAvtsdqetgeRRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMhryrsvmdggeggldgssrygredevdtdasvfVKYNrmlhgkrtqrgqkrdtlTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAElrnsssnaktggtlpitaRTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEMEEREQERQREqeknpraehpggndradhstndNERMEAFNSVFGQHMRANRLDLITITELEEIVNTGMDAHYSRAEITFLLEKLQDENRVMIADGIVHMIS
MDISQQEFQERKREFYDFLELSIYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTGVPTGSVYPTRDEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEMeereqerqreqeKNPRAEHPGGNDRADHSTNDNERMEAFNSVFGQHMRANRLDLITITELEEIVNTGMDAHYSRAEITFLLEKLQDENRVMIADGIVHMIS
*************EFYDFLELSIYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTGVPTGSVYPTRDEHGNLLVTEYGLCKYKDHQTLS**************RTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGR****VGLT*************LEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSV***********************ASVFVKYNRMLHGK******KRDTLTIQFLKKYIHYAKHRIQ*****************************TLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHK********************************************NSVFGQHMRANRLDLITITELEEIVNTGMDAHYSRAEITFLLEKLQDENRVMIADGIVH***
****QQEFQERKREFYDFLELSIYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRD************************TEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALP*******NGVFRTVLIANNVS***************LKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHR****************************SVFVKY****************TLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYA*****************TARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYH*****************************************************************LE**************EITFLLEKLQDENRVMIADGIVHMIS
*********ERKREFYDFLELSIYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTGVPTGSVYPTRDEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLH********KRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTE******************************TNDNERMEAFNSVFGQHMRANRLDLITITELEEIVNTGMDAHYSRAEITFLLEKLQDENRVMIADGIVHMIS
*DISQQEFQERKREFYDFLELSIYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTGVPTGSVYPTRDEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYR*****************************VK*********T***QKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSS*****GGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEME*******************************NERMEAFNSVFGQHMRANRLDLITITELEEIVNTGMDAHYSRAEITFLLEKLQDENRVMIADGIVHMIS
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MDISQQEFQERKREFYDFLELSIYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTGVPTGSVYPTRDEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIxxxxxxxxxxxxxxxxxxxxxxPRAEHPGGNDRADHSTNDNERMEAFNSVFGQHMRANRLDLITITELEEIVNTGMDAHYSRAEITFLLEKLQDENRVMIADGIVHMIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query748 2.2.26 [Sep-21-2011]
Q43704768 DNA replication licensing N/A no 0.991 0.966 0.716 0.0
Q9FL33776 DNA replication licensing yes no 0.987 0.952 0.721 0.0
Q9SX03768 DNA replication licensing N/A no 0.991 0.966 0.712 0.0
Q9SX04768 DNA replication licensing N/A no 0.991 0.966 0.712 0.0
Q9XYU1819 DNA replication licensing yes no 0.863 0.788 0.565 0.0
P25205808 DNA replication licensing yes no 0.979 0.907 0.498 0.0
Q5R8G6808 DNA replication licensing yes no 0.979 0.907 0.497 0.0
P49739807 Maternal DNA replication N/A no 0.985 0.913 0.479 0.0
Q7ZXZ0806 Zygotic DNA replication l N/A no 0.989 0.918 0.496 0.0
A4FUD9808 DNA replication licensing yes no 0.979 0.907 0.491 0.0
>sp|Q43704|MCM31_MAIZE DNA replication licensing factor MCM3 homolog 1 OS=Zea mays GN=ROA1 PE=2 SV=2 Back     alignment and function desciption
 Score = 1122 bits (2901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/773 (71%), Positives = 641/773 (82%), Gaps = 31/773 (4%)

Query: 1   MDISQQEFQERKREFYDFLEL----SIYQDEIKAMINHKRCRLIVNISDLYAFREDLPPR 56
           M+I+++     KR F DFL+      +Y   ++ M+ +KR RLI+ + DL     DL  R
Sbjct: 1   MEINEEAMAAHKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLIIGMDDLRNHNLDLARR 60

Query: 57  LLKNPVEYLQPFCDAATDWARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSM 116
           +++ P EY+QP  DA ++ ARN+DPK+LKEGE ++VGF GPF    VTPRDL+S FIG+M
Sbjct: 61  VIRTPGEYMQPASDAVSEVARNLDPKFLKEGERVMVGFSGPFGFHRVTPRDLMSSFIGTM 120

Query: 117 VCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTGVPTGSVYPTRDEHGNLL 176
           VCVEGIVTKCSLVRPKVVKSVH+CP TG FL+REYRDITS  G+PTGSVYPTRD++GNLL
Sbjct: 121 VCVEGIVTKCSLVRPKVVKSVHFCPVTGDFLSREYRDITSFVGLPTGSVYPTRDDNGNLL 180

Query: 177 VTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKAL 236
           VTEYG+C+YKDHQTLS+QEVPE SAPGQLPRTVDVIVEDDLVD CKPGDRV+IVG YKAL
Sbjct: 181 VTEYGMCEYKDHQTLSMQEVPENSAPGQLPRTVDVIVEDDLVDCCKPGDRVSIVGVYKAL 240

Query: 237 PGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAP 296
           PGKSKGSV+GVFRTVLIANNVSLLNKEANAP+YT EDLK +K+I+ R+DTFDLLGNSLAP
Sbjct: 241 PGKSKGSVSGVFRTVLIANNVSLLNKEANAPVYTREDLKRMKEISRRNDTFDLLGNSLAP 300

Query: 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA 356
           SIYGH WIKKAV+LLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRA+MNIAPLA
Sbjct: 301 SIYGHLWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAVMNIAPLA 360

Query: 357 ISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEV 416
           ISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEV
Sbjct: 361 ISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEV 420

Query: 417 MEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476
           MEQQTVTIAKAGIHASLNARCSV+AAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV
Sbjct: 421 MEQQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 480

Query: 477 LDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLH 536
           LDQMDP+IDR+IS+HV RMHRY    DGG   LD    Y  ED+ D +A++FVKY+RMLH
Sbjct: 481 LDQMDPEIDRQISEHVARMHRY-CTDDGGARSLDKEG-YAEEDDGDANAAIFVKYDRMLH 538

Query: 537 GKRTQRGQ--KRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKT- 593
           G+  +RG+  K+D LT++FLKKYIHYAK+ IQP LTDEAS+ IAT+YAELR+ S+NAK+ 
Sbjct: 539 GQDRRRGKKSKQDRLTVKFLKKYIHYAKNLIQPRLTDEASDHIATSYAELRDGSANAKSG 598

Query: 594 GGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEMEEREQE 653
           GGTLPITARTLE+IIRLSTAHAKMKL  ++ KSDVEAAL+ LNFAIYHKELTEMEERE  
Sbjct: 599 GGTLPITARTLESIIRLSTAHAKMKLRHEVLKSDVEAALQVLNFAIYHKELTEMEERE-- 656

Query: 654 RQREQEKNPRAEH-------------PGGNDRADHSTNDN------ERMEAFNSVFGQHM 694
            Q+E E   +AEH               GND  D     N      ER+EAF ++ GQH+
Sbjct: 657 -QKEMEMKQQAEHDAGATGGTVDGHGSSGNDPMDVDVGSNDQNVSAERIEAFEALLGQHV 715

Query: 695 RANRLDLITITELEEIVNTGMDAHYSRAEITFLLEKLQDENRVMIADGIVHMI 747
            AN +D ++I E+E++VN    A Y+R+++ F+LE++QD NRVMI DG+V +I
Sbjct: 716 LANHIDQMSIDEIEQMVNRESTAPYTRSQVEFILERMQDANRVMIRDGVVRII 768
Acts as a factor that allows the DNA to undergo a single round of replication per cell cycle. Required for DNA replication and cell proliferation (By similarity). May act as a component of the MCM complex which is the putative replicative helicase of the replication licensing system in eukaryotic cells.
Zea mays (taxid: 4577)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2
>sp|Q9FL33|MCM3_ARATH DNA replication licensing factor MCM3 homolog OS=Arabidopsis thaliana GN=MCM3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SX03|MCM33_MAIZE DNA replication licensing factor MCM3 homolog 3 OS=Zea mays GN=ROA3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SX04|MCM32_MAIZE DNA replication licensing factor MCM3 homolog 2 OS=Zea mays GN=ROA2 PE=2 SV=1 Back     alignment and function description
>sp|Q9XYU1|MCM3_DROME DNA replication licensing factor Mcm3 OS=Drosophila melanogaster GN=Mcm3 PE=1 SV=1 Back     alignment and function description
>sp|P25205|MCM3_HUMAN DNA replication licensing factor MCM3 OS=Homo sapiens GN=MCM3 PE=1 SV=3 Back     alignment and function description
>sp|Q5R8G6|MCM3_PONAB DNA replication licensing factor MCM3 OS=Pongo abelii GN=MCM3 PE=2 SV=1 Back     alignment and function description
>sp|P49739|MCM3M_XENLA Maternal DNA replication licensing factor mcm3 OS=Xenopus laevis GN=mmcm3 PE=1 SV=2 Back     alignment and function description
>sp|Q7ZXZ0|MCM3Z_XENLA Zygotic DNA replication licensing factor mcm3 OS=Xenopus laevis GN=zmcm3 PE=1 SV=1 Back     alignment and function description
>sp|A4FUD9|MCM3_BOVIN DNA replication licensing factor MCM3 OS=Bos taurus GN=MCM3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query748
357476415773 DNA replication licensing factor MCM3-li 0.995 0.963 0.811 0.0
356510786772 PREDICTED: DNA replication licensing fac 0.997 0.966 0.811 0.0
255557351769 DNA replication licensing factor MCM3, p 0.978 0.951 0.806 0.0
356524957779 PREDICTED: DNA replication licensing fac 0.998 0.958 0.797 0.0
225463458773 PREDICTED: DNA replication licensing fac 0.997 0.965 0.811 0.0
297740670776 unnamed protein product [Vitis vinifera] 0.997 0.961 0.808 0.0
449433549771 PREDICTED: DNA replication licensing fac 0.994 0.964 0.807 0.0
224077628761 predicted protein [Populus trichocarpa] 0.970 0.954 0.809 0.0
68566478710 mini-chromosome maintenance protein MCM3 0.913 0.961 0.818 0.0
413949662770 putative mini-chromosome maintenance (MC 0.991 0.963 0.714 0.0
>gi|357476415|ref|XP_003608493.1| DNA replication licensing factor MCM3-like protein [Medicago truncatula] gi|355509548|gb|AES90690.1| DNA replication licensing factor MCM3-like protein [Medicago truncatula] Back     alignment and taxonomy information
 Score = 1266 bits (3276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 630/776 (81%), Positives = 692/776 (89%), Gaps = 31/776 (3%)

Query: 1   MDISQQEFQERKREFYDFLEL----SIYQDEIKAMINHKRCRLIVNISDLYAFREDLPPR 56
           MD+S++  Q  KREF DFL+     SIY DEIKA+INHKR RLIVNISDL+ FR DL  R
Sbjct: 1   MDLSEEVRQAHKREFVDFLDQDIGKSIYMDEIKALINHKRRRLIVNISDLHNFR-DLGNR 59

Query: 57  LLKNPVEYLQPFCDAATDWARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSM 116
           +L+NP EY+Q FCDA T+  R  DPKYLKEGE +LVGFEGPFVSR VTPRDLLS+FIGSM
Sbjct: 60  ILRNPSEYMQSFCDAVTETVRGSDPKYLKEGEQVLVGFEGPFVSRRVTPRDLLSEFIGSM 119

Query: 117 VCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTGVPTGSVYPTRDEHGNLL 176
           VCVEGI+TKCSLVRPKVVKSVH+CPTTGSF +R+YRDITSN G+PTGSVYPTRDE GNLL
Sbjct: 120 VCVEGIITKCSLVRPKVVKSVHFCPTTGSFTSRDYRDITSNLGLPTGSVYPTRDESGNLL 179

Query: 177 VTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKAL 236
           VTEYG+CKYKDHQTLS+QEVPE SAPGQLPRTVD+I EDDLVDSCKPGDRVAIVG YKAL
Sbjct: 180 VTEYGMCKYKDHQTLSMQEVPENSAPGQLPRTVDIIAEDDLVDSCKPGDRVAIVGIYKAL 239

Query: 237 PGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAP 296
           PGKSKGSVNGVFRTVLIANNVSLLNKEANAPIY+PEDLK+IKKIAERDDTFDLLGNSLAP
Sbjct: 240 PGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAP 299

Query: 297 SIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA 356
           SI+GHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA
Sbjct: 300 SIHGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLA 359

Query: 357 ISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEV 416
           ISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEV
Sbjct: 360 ISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEV 419

Query: 417 MEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 476
           MEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV
Sbjct: 420 MEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIV 479

Query: 477 LDQMDPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLH 536
           LDQMDPDIDR+IS+HVLRMHR+RS +DGGE   DGS+RYGRE+E DT++SVFVKYNRMLH
Sbjct: 480 LDQMDPDIDRQISEHVLRMHRFRSAIDGGEAAHDGSARYGREEEADTESSVFVKYNRMLH 539

Query: 537 GKRTQRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGT 596
           GK+T RG+KRDTLTI+FLKKYIHYAKHRIQP+LTDEASEQIA  YAELRN+ SNAKTGGT
Sbjct: 540 GKKTDRGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEQIAAAYAELRNAKSNAKTGGT 599

Query: 597 LPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEMEEREQERQR 656
           LPITARTLETIIRLSTAHAK+KL+RK+SKSDV+AALK LNFAIYHKELTEM+ERE+ER+R
Sbjct: 600 LPITARTLETIIRLSTAHAKLKLSRKVSKSDVDAALKILNFAIYHKELTEMDEREEERER 659

Query: 657 EQEKNPRAEHPGGNDRAD-------HSTNDN-----------------ERMEAFNSVFGQ 692
           E E+  RA+  G ND  D       +ST+D                  ER+EAFNS+FGQ
Sbjct: 660 ELERKRRAD--GENDGPDRGSKSKRNSTSDAMEVDDTSEAQPAVGLTPERIEAFNSLFGQ 717

Query: 693 HMRANRLDLITITELEEIVNTGMDAHYSRAEITFLLEKLQDENRVMIADGIVHMIS 748
           HMR+NRLD I I ++E+++N G  + YS A++  LLEKLQ++NR+MIADGIVHM+S
Sbjct: 718 HMRSNRLDQIPIADIEDVINRGAGSTYSSADVLLLLEKLQEDNRLMIADGIVHMVS 773

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356510786|ref|XP_003524115.1| PREDICTED: DNA replication licensing factor MCM3 homolog [Glycine max] Back     alignment and taxonomy information
>gi|255557351|ref|XP_002519706.1| DNA replication licensing factor MCM3, putative [Ricinus communis] gi|223541123|gb|EEF42679.1| DNA replication licensing factor MCM3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356524957|ref|XP_003531094.1| PREDICTED: DNA replication licensing factor MCM3 homolog [Glycine max] Back     alignment and taxonomy information
>gi|225463458|ref|XP_002276065.1| PREDICTED: DNA replication licensing factor MCM3 homolog 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740670|emb|CBI30852.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449433549|ref|XP_004134560.1| PREDICTED: DNA replication licensing factor MCM3 homolog 1-like [Cucumis sativus] gi|449505920|ref|XP_004162604.1| PREDICTED: DNA replication licensing factor MCM3 homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224077628|ref|XP_002305335.1| predicted protein [Populus trichocarpa] gi|222848299|gb|EEE85846.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|68566478|gb|AAN73053.2| mini-chromosome maintenance protein MCM3 [Pisum sativum] Back     alignment and taxonomy information
>gi|413949662|gb|AFW82311.1| putative mini-chromosome maintenance (MCM) complex protein family [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query748
TAIR|locus:2170418776 MCM3 "MINICHROMOSOME MAINTENAN 0.856 0.826 0.790 1.4e-291
FB|FBgn0024332819 Mcm3 "Minichromosome maintenan 0.850 0.776 0.574 8.6e-197
ZFIN|ZDB-GENE-040121-2807 mcm3l "MCM3 minichromosome mai 0.847 0.785 0.564 1.4e-196
UNIPROTKB|B4DWW4853 MCM3 "MCM3 minichromosome main 0.842 0.738 0.565 3.8e-194
UNIPROTKB|P25205808 MCM3 "DNA replication licensin 0.842 0.779 0.565 3.8e-194
UNIPROTKB|Q5R8G6808 MCM3 "DNA replication licensin 0.842 0.779 0.565 3.8e-194
UNIPROTKB|Q7ZXZ0806 zmcm3 "Zygotic DNA replication 0.852 0.791 0.562 3.8e-194
UNIPROTKB|I3L7E5841 MCM3 "Uncharacterized protein" 0.842 0.749 0.562 2.1e-193
UNIPROTKB|G3X6V0808 MCM3 "DNA replication licensin 0.842 0.779 0.557 1.1e-192
UNIPROTKB|E2RF73808 MCM3 "Uncharacterized protein" 0.842 0.779 0.559 1.5e-192
TAIR|locus:2170418 MCM3 "MINICHROMOSOME MAINTENANCE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2638 (933.7 bits), Expect = 1.4e-291, Sum P(2) = 1.4e-291
 Identities = 512/648 (79%), Positives = 576/648 (88%)

Query:     1 MDISQQEFQERKREFYDFLELSIYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKN 60
             MD+ ++     KR+F  FL+ S+Y +EIKA+++ KR RLI+NISD++    ++  R+LKN
Sbjct:     1 MDVPEETRLRHKRDFIQFLD-SMYMEEIKALVHQKRHRLIINISDIHHHFREVASRILKN 59

Query:    61 PVEYLQPFCDAATDWARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVE 120
             P EY+Q FCDAAT+  R IDPKYLKEGE +LVGFEG FVSR VTPR+LLS FIGSMVCVE
Sbjct:    60 PNEYMQSFCDAATEATRAIDPKYLKEGELVLVGFEGYFVSRVVTPRELLSDFIGSMVCVE 119

Query:   121 GIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTGVPTGSVYPTRDEHGNLLVTEY 180
             GIVTKCSLVRPKVVKSVH+CP+TG F  R+YRDITS+ G+PTGSVYPTRD+ GNLLVTEY
Sbjct:   120 GIVTKCSLVRPKVVKSVHFCPSTGEFTNRDYRDITSHAGLPTGSVYPTRDDKGNLLVTEY 179

Query:   181 GLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGKS 240
             GLCKYKDHQTLS+QEVPE +APGQLPR+VDVI EDDLVDSCKPGDRV++ G YKALPGKS
Sbjct:   180 GLCKYKDHQTLSIQEVPENAAPGQLPRSVDVIAEDDLVDSCKPGDRVSVFGIYKALPGKS 239

Query:   241 KGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYG 300
             KGSVNGVFRT+LIANN++LLNKEANAPIYT +DL +IK IA RDD FDLL  SLAPSIYG
Sbjct:   240 KGSVNGVFRTILIANNIALLNKEANAPIYTKQDLDNIKNIARRDDAFDLLARSLAPSIYG 299

Query:   301 HSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360
             H+WIKKAV+LLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTT
Sbjct:   300 HAWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTT 359

Query:   361 GRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQ 420
             GRGSSGVGLTAAVTSDQETGERRLEAGAMVLAD+G+VCIDEFDKMNDQDRVAIHEVMEQQ
Sbjct:   360 GRGSSGVGLTAAVTSDQETGERRLEAGAMVLADKGIVCIDEFDKMNDQDRVAIHEVMEQQ 419

Query:   421 TVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQM 480
             TVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQM
Sbjct:   420 TVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQM 479

Query:   481 DPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRT 540
             D  ID  IS+HVLRMHRY++  D GE G DGS  Y RED  +++  +FVKYN+ LHGK+ 
Sbjct:   480 DAGIDSMISEHVLRMHRYKN--DRGEAGPDGSLPYAREDNAESE--MFVKYNQTLHGKK- 534

Query:   541 QRGQKRD-TLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPI 599
             +RGQ  D TLTI+FLKKYIHYAKHRI P+LTDEASE+IA  YA+LRN+ S+ KTGGTLPI
Sbjct:   535 KRGQTHDKTLTIKFLKKYIHYAKHRITPKLTDEASERIAEAYADLRNAGSDTKTGGTLPI 594

Query:   600 TARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAIYHKELTEM 647
             TARTLETIIRL+TAHAKMKL+ +++K+D EAALK +NFAIYH+ELTEM
Sbjct:   595 TARTLETIIRLATAHAKMKLSSEVTKADAEAALKLMNFAIYHQELTEM 642
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006260 "DNA replication" evidence=IEA;RCA
GO:0006270 "DNA replication initiation" evidence=IEA;ISS;RCA
GO:0008094 "DNA-dependent ATPase activity" evidence=ISS
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0006268 "DNA unwinding involved in replication" evidence=TAS
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0016458 "gene silencing" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
FB|FBgn0024332 Mcm3 "Minichromosome maintenance 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040121-2 mcm3l "MCM3 minichromosome maintenance deficient 3 (S. cerevisiae), like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B4DWW4 MCM3 "MCM3 minichromosome maintenance deficient 3 (S. cerevisiae), isoform CRA_b" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P25205 MCM3 "DNA replication licensing factor MCM3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R8G6 MCM3 "DNA replication licensing factor MCM3" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZXZ0 zmcm3 "Zygotic DNA replication licensing factor mcm3" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|I3L7E5 MCM3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|G3X6V0 MCM3 "DNA replication licensing factor MCM3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RF73 MCM3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FL33MCM3_ARATH3, ., 6, ., 4, ., 1, 20.72190.98790.9523yesno
Q43704MCM31_MAIZE3, ., 6, ., 4, ., 1, 20.71660.99190.9661N/Ano
P25205MCM3_HUMAN3, ., 6, ., 4, ., 1, 20.49870.97990.9071yesno
P25206MCM3_MOUSE3, ., 6, ., 4, ., 1, 20.48070.98390.9064yesno
Q9XYU1MCM3_DROME3, ., 6, ., 4, ., 1, 20.56560.86360.7887yesno
A4FUD9MCM3_BOVIN3, ., 6, ., 4, ., 1, 20.49130.97990.9071yesno
Q9SX03MCM33_MAIZE3, ., 6, ., 4, ., 1, 20.71280.99190.9661N/Ano
P30666MCM3_SCHPO3, ., 6, ., 4, ., 1, 20.52150.85020.7235yesno
Q9SX04MCM32_MAIZE3, ., 6, ., 4, ., 1, 20.71280.99190.9661N/Ano
Q5ZMN2MCM3_CHICK3, ., 6, ., 4, ., 1, 20.47270.98390.9064yesno
Q5R8G6MCM3_PONAB3, ., 6, ., 4, ., 1, 20.49750.97990.9071yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00003433001
SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (783 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00006228001
SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (739 aa)
  ••••••0.887
GSVIVG00035935001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (721 aa)
  ••••••0.869
GSVIVG00028109001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (718 aa)
  ••••••0.867
GSVIVG00005616001
SubName- Full=Chromosome undetermined scaffold_155, whole genome shotgun sequence; (732 aa)
  ••••••0.857
GSVIVG00018925001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (592 aa)
   •••• 0.856
GSVIVG00024178001
RecName- Full=Proliferating cell nuclear antigen;; This protein is an auxiliary protein of DNA [...] (266 aa)
  ••  • 0.833
GSVIVG00002439001
RecName- Full=DNA primase; EC=2.7.7.-; (457 aa)
   • •• 0.794
GSVIVG00019349001
RecName- Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1;; Provides the precursors neces [...] (790 aa)
   •  • 0.761
GSVIVG00022496001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (330 aa)
   •  • 0.746
GSVIVG00006013001
RecName- Full=DNA polymerase; EC=2.7.7.7; (1126 aa)
   •  • 0.744

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query748
smart00350509 smart00350, MCM, minichromosome maintenance protei 0.0
COG1241682 COG1241, MCM2, Predicted ATPase involved in replic 0.0
pfam00493327 pfam00493, MCM, MCM2/3/5 family 1e-158
PTZ00111915 PTZ00111, PTZ00111, DNA replication licensing fact 1e-78
COG0714329 COG0714, COG0714, MoxR-like ATPases [General funct 3e-07
COG1239423 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme 1e-04
pfam07728135 pfam07728, AAA_5, AAA domain (dynein-related subfa 2e-04
pfam01078207 pfam01078, Mg_chelatase, Magnesium chelatase, subu 5e-04
cd00009151 cd00009, AAA, The AAA+ (ATPases Associated with a 0.004
>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins Back     alignment and domain information 
 Score =  659 bits (1703), Expect = 0.0
 Identities = 238/552 (43%), Positives = 331/552 (59%), Gaps = 57/552 (10%)

Query: 101 RCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKS---VHYCPTTGSFLTREYRDITSN 157
           +  + R+L +  +G +V + GIVT+ S VRPK+ ++      C  T     +  R+    
Sbjct: 1   KPSSIRELRADHLGKLVRISGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPT 60

Query: 158 TGVPTGSVYPTRDEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDL 217
              P     PT           +    + D Q + +QE PE+   GQLPR+VDVI++ DL
Sbjct: 61  VCPPRECQSPTP------FSLNHERSTFIDFQKIKLQESPEEVPVGQLPRSVDVILDGDL 114

Query: 218 VDSCKPGDRVAIVGTYKALP-GKSKGSVNG--VFRTVLIANNVSLLNK-------EANAP 267
           VD  KPGDRV + G Y+ +P G    +V G  VF T + AN+V  L+          +  
Sbjct: 115 VDKAKPGDRVEVTGIYRNVPYGFKLNTVKGLPVFATYIEANHVRKLDYKRSFEDSSFSVQ 174

Query: 268 IYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLR 327
             + E+ + I+K+++  D ++ L  SLAPSIYGH  IKKA++LL+ GGV KNL +G  +R
Sbjct: 175 SLSDEEEEEIRKLSKDPDIYERLARSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIR 234

Query: 328 GDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAG 387
           GDIN+++ GDP  AKSQLL+ +   AP A+ TTG+GSS VGLTAAVT D ET E  LEAG
Sbjct: 235 GDINILLCGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEAG 294

Query: 388 AMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIY 447
           A+VLAD GV CIDEFDKM+D DR AIHE MEQQT++IAKAGI  +LNARCSV+AAANPI 
Sbjct: 295 ALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIG 354

Query: 448 GTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHRYRSVMDGGEG 507
           G YD  LTP +NI LP  +LSRFDLLF+VLD++D + DR ++ HV+ +HRY         
Sbjct: 355 GRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRY--------- 405

Query: 508 GLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKYIHYAKHRIQP 567
                       E D      +                      + L+KYI YA+ +I+P
Sbjct: 406 ---------SHPEEDEAFEPPLS--------------------QEKLRKYIAYAREKIKP 436

Query: 568 ELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSD 627
           +L++EA++++   Y +LR   S  ++  ++PIT R LE+IIRLS AHAKM+L+  + ++D
Sbjct: 437 KLSEEAADKLVKAYVDLRKEDSQTESRSSIPITVRQLESIIRLSEAHAKMRLSDVVEEAD 496

Query: 628 VEAALKALNFAI 639
           VE A++ L  +I
Sbjct: 497 VEEAIRLLRESI 508

Length = 509
>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|215947 pfam00493, MCM, MCM2/3/5 family Back     alignment and domain information
>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>gnl|CDD|224160 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) Back     alignment and domain information
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI Back     alignment and domain information
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 748
KOG0479818 consensus DNA replication licensing factor, MCM3 c 100.0
COG1241682 MCM2 Predicted ATPase involved in replication cont 100.0
KOG0480764 consensus DNA replication licensing factor, MCM6 c 100.0
PTZ00111915 DNA replication licensing factor MCM4; Provisional 100.0
KOG0482721 consensus DNA replication licensing factor, MCM7 c 100.0
KOG0478804 consensus DNA replication licensing factor, MCM4 c 100.0
KOG0481729 consensus DNA replication licensing factor, MCM5 c 100.0
KOG0477854 consensus DNA replication licensing factor, MCM2 c 100.0
smart00350509 MCM minichromosome maintenance proteins. 100.0
PF00493331 MCM: MCM2/3/5 family This family extends the MCM d 100.0
COG0606490 Predicted ATPase with chaperone activity [Posttran 99.96
TIGR00368499 Mg chelatase-related protein. The N-terminal end m 99.96
PRK09862506 putative ATP-dependent protease; Provisional 99.95
TIGR02442 633 Cob-chelat-sub cobaltochelatase subunit. A number 99.95
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 99.95
PRK13407334 bchI magnesium chelatase subunit I; Provisional 99.94
TIGR02031 589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 99.94
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 99.94
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 99.94
COG1239423 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis 99.91
PRK13531 498 regulatory ATPase RavA; Provisional 99.9
PRK13406 584 bchD magnesium chelatase subunit D; Provisional 99.89
COG0714329 MoxR-like ATPases [General function prediction onl 99.84
TIGR00764 608 lon_rel lon-related putative ATP-dependent proteas 99.8
PF07726131 AAA_3: ATPase family associated with various cellu 99.78
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 99.77
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 99.76
COG2255332 RuvB Holliday junction resolvasome, helicase subun 99.75
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 99.73
PF14551121 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1 99.7
TIGR02902531 spore_lonB ATP-dependent protease LonB. Members of 99.7
PRK13765 637 ATP-dependent protease Lon; Provisional 99.64
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 99.61
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 99.6
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 99.59
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 99.58
COG3829560 RocR Transcriptional regulator containing PAS, AAA 99.58
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 99.56
COG3604550 FhlA Transcriptional regulator containing GAF, AAA 99.52
COG2204464 AtoC Response regulator containing CheY-like recei 99.5
CHL00181287 cbbX CbbX; Provisional 99.49
PHA02244383 ATPase-like protein 99.49
TIGR02974329 phageshock_pspF psp operon transcriptional activat 99.47
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 99.47
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 99.44
COG1221403 PspF Transcriptional regulators containing an AAA- 99.44
COG0466782 Lon ATP-dependent Lon protease, bacterial type [Po 99.41
PRK10787784 DNA-binding ATP-dependent protease La; Provisional 99.39
PRK11608326 pspF phage shock protein operon transcriptional ac 99.38
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 99.38
TIGR02329526 propionate_PrpR propionate catabolism operon regul 99.37
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 99.37
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 99.36
TIGR02903615 spore_lon_C ATP-dependent protease, Lon family. Me 99.36
KOG0734752 consensus AAA+-type ATPase containing the peptidas 99.36
PRK15424538 propionate catabolism operon regulatory protein Pr 99.35
TIGR01817534 nifA Nif-specific regulatory protein. This model r 99.35
PRK05022509 anaerobic nitric oxide reductase transcription reg 99.33
COG2256436 MGS1 ATPase related to the helicase subunit of the 99.33
PRK11388638 DNA-binding transcriptional regulator DhaR; Provis 99.32
KOG2004906 consensus Mitochondrial ATP-dependent protease PIM 99.3
CHL00195489 ycf46 Ycf46; Provisional 99.3
TIGR00763775 lon ATP-dependent protease La. This protein is ind 99.3
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 99.28
PRK03992389 proteasome-activating nucleotidase; Provisional 99.27
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 99.26
PRK10820520 DNA-binding transcriptional regulator TyrR; Provis 99.26
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 99.25
PRK10923469 glnG nitrogen regulation protein NR(I); Provisiona 99.21
TIGR02915445 PEP_resp_reg putative PEP-CTERM system response re 99.21
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 99.21
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 99.2
CHL00095821 clpC Clp protease ATP binding subunit 99.2
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 99.2
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 99.2
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 99.19
PRK15429686 formate hydrogenlyase transcriptional activator Fh 99.19
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 99.17
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 99.16
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 99.16
PRK11361457 acetoacetate metabolism regulatory protein AtoC; P 99.16
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 99.15
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 99.15
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 99.15
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 99.14
TIGR02928365 orc1/cdc6 family replication initiation protein. M 99.14
PRK13342413 recombination factor protein RarA; Reviewed 99.14
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 99.13
PRK10865857 protein disaggregation chaperone; Provisional 99.13
PLN03025319 replication factor C subunit; Provisional 99.12
CHL00176638 ftsH cell division protein; Validated 99.12
smart00763361 AAA_PrkA PrkA AAA domain. This is a family of PrkA 99.12
KOG0738491 consensus AAA+-type ATPase [Posttranslational modi 99.12
PRK00411394 cdc6 cell division control protein 6; Reviewed 99.11
PRK15115444 response regulator GlrR; Provisional 99.11
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 99.11
PTZ001121164 origin recognition complex 1 protein; Provisional 99.1
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 99.1
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 99.09
KOG2028554 consensus ATPase related to the helicase subunit o 99.07
KOG0730693 consensus AAA+-type ATPase [Posttranslational modi 99.06
PRK13341 725 recombination factor protein RarA/unknown domain f 99.06
TIGR01818463 ntrC nitrogen regulation protein NR(I). This model 99.06
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 99.05
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 99.05
COG3283511 TyrR Transcriptional regulator of aromatic amino a 99.03
TIGR02639 731 ClpA ATP-dependent Clp protease ATP-binding subuni 99.03
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 99.03
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 99.03
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 99.02
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 99.0
COG1224450 TIP49 DNA helicase TIP49, TBP-interacting protein 99.0
KOG0737386 consensus AAA+-type ATPase [Posttranslational modi 98.99
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 98.98
PRK10365441 transcriptional regulatory protein ZraR; Provision 98.97
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 98.97
KOG0736953 consensus Peroxisome assembly factor 2 containing 98.97
KOG0731774 consensus AAA+-type ATPase containing the peptidas 98.96
PRK07994 647 DNA polymerase III subunits gamma and tau; Validat 98.96
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 98.95
COG3284606 AcoR Transcriptional activator of acetoin/glycerol 98.95
PF00004132 AAA: ATPase family associated with various cellula 98.94
PRK08903227 DnaA regulatory inactivator Hda; Validated 98.94
PRK05896 605 DNA polymerase III subunits gamma and tau; Validat 98.94
CHL00206 2281 ycf2 Ycf2; Provisional 98.94
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 98.93
PRK14951 618 DNA polymerase III subunits gamma and tau; Provisi 98.93
PRK00440319 rfc replication factor C small subunit; Reviewed 98.93
PRK14952 584 DNA polymerase III subunits gamma and tau; Provisi 98.91
PRK11331459 5-methylcytosine-specific restriction enzyme subun 98.91
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 98.91
COG0465596 HflB ATP-dependent Zn proteases [Posttranslational 98.9
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 98.9
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 98.89
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 98.89
PRK14965 576 DNA polymerase III subunits gamma and tau; Provisi 98.88
PRK12402337 replication factor C small subunit 2; Reviewed 98.88
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 98.87
PRK14959 624 DNA polymerase III subunits gamma and tau; Provisi 98.87
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 98.86
PRK05563 559 DNA polymerase III subunits gamma and tau; Validat 98.85
PRK10733644 hflB ATP-dependent metalloprotease; Reviewed 98.85
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 98.85
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 98.83
COG1220444 HslU ATP-dependent protease HslVU (ClpYQ), ATPase 98.83
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 98.82
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 98.81
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 98.81
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 98.8
PRK06647 563 DNA polymerase III subunits gamma and tau; Validat 98.8
TIGR03345 852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 98.78
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 98.78
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 98.77
PRK11034 758 clpA ATP-dependent Clp protease ATP-binding subuni 98.77
KOG0745564 consensus Putative ATP-dependent Clp-type protease 98.76
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 98.75
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 98.74
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 98.73
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 98.73
PRK09111 598 DNA polymerase III subunits gamma and tau; Validat 98.72
KOG1942456 consensus DNA helicase, TBP-interacting protein [R 98.71
PRK14950 585 DNA polymerase III subunits gamma and tau; Provisi 98.71
PRK14954 620 DNA polymerase III subunits gamma and tau; Provisi 98.68
PRK08084235 DNA replication initiation factor; Provisional 98.66
KOG0727408 consensus 26S proteasome regulatory complex, ATPas 98.65
PRK09087226 hypothetical protein; Validated 98.65
PRK06620214 hypothetical protein; Validated 98.64
PHA02544316 44 clamp loader, small subunit; Provisional 98.63
CHL00095 821 clpC Clp protease ATP binding subunit 98.63
KOG0652424 consensus 26S proteasome regulatory complex, ATPas 98.62
PRK14948 620 DNA polymerase III subunits gamma and tau; Provisi 98.61
PRK04195482 replication factor C large subunit; Provisional 98.61
PHA01747425 putative ATP-dependent protease 98.61
TIGR01243 733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 98.6
KOG0733 802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 98.59
PRK14971 614 DNA polymerase III subunits gamma and tau; Provisi 98.59
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 98.57
PRK10865 857 protein disaggregation chaperone; Provisional 98.56
PF13337457 Lon_2: Putative ATP-dependent Lon protease 98.56
PRK08727233 hypothetical protein; Validated 98.55
PRK06893229 DNA replication initiation factor; Validated 98.55
PRK12422445 chromosomal replication initiation protein; Provis 98.54
COG1067 647 LonB Predicted ATP-dependent protease [Posttransla 98.54
PRK07940394 DNA polymerase III subunit delta'; Validated 98.52
TIGR02688449 conserved hypothetical protein TIGR02688. Members 98.51
PRK14087450 dnaA chromosomal replication initiation protein; P 98.51
PF12774231 AAA_6: Hydrolytic ATP binding site of dynein motor 98.49
KOG0742630 consensus AAA+-type ATPase [Posttranslational modi 98.49
TIGR00362405 DnaA chromosomal replication initiator protein Dna 98.49
TIGR03346 852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 98.47
KOG0740428 consensus AAA+-type ATPase [Posttranslational modi 98.46
PRK00149450 dnaA chromosomal replication initiation protein; R 98.45
PRK14086617 dnaA chromosomal replication initiation protein; P 98.42
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 98.41
KOG1051898 consensus Chaperone HSP104 and related ATP-depende 98.41
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 98.4
KOG0743457 consensus AAA+-type ATPase [Posttranslational modi 98.39
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 98.39
KOG0728404 consensus 26S proteasome regulatory complex, ATPas 98.37
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 98.36
PRK05642234 DNA replication initiation factor; Validated 98.34
KOG0735952 consensus AAA+-type ATPase [Posttranslational modi 98.33
PF14532138 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 98.3
COG4650531 RtcR Sigma54-dependent transcription regulator con 98.3
PRK14088440 dnaA chromosomal replication initiation protein; P 98.29
PF06068398 TIP49: TIP49 C-terminus; InterPro: IPR010339 This 98.24
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 98.22
smart00382148 AAA ATPases associated with a variety of cellular 98.2
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 98.19
PRK09112351 DNA polymerase III subunit delta'; Validated 98.14
TIGR02653675 Lon_rel_chp conserved hypothetical protein. This m 98.11
PRK04132846 replication factor C small subunit; Provisional 98.11
COG0470325 HolB ATPase involved in DNA replication [DNA repli 98.1
KOG0729435 consensus 26S proteasome regulatory complex, ATPas 98.04
PRK07471365 DNA polymerase III subunit delta'; Validated 98.03
KOG0726440 consensus 26S proteasome regulatory complex, ATPas 98.02
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 97.98
KOG0651388 consensus 26S proteasome regulatory complex, ATPas 97.97
PRK15455644 PrkA family serine protein kinase; Provisional 97.95
PRK05564313 DNA polymerase III subunit delta'; Validated 97.94
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 97.93
PRK08058329 DNA polymerase III subunit delta'; Validated 97.93
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 97.9
PF1333596 Mg_chelatase_2: Magnesium chelatase, subunit ChlI 97.87
PRK07399314 DNA polymerase III subunit delta'; Validated 97.84
KOG0730693 consensus AAA+-type ATPase [Posttranslational modi 97.83
PRK12377248 putative replication protein; Provisional 97.74
COG5245 3164 DYN1 Dynein, heavy chain [Cytoskeleton] 97.71
KOG2545543 consensus Conserved membrane protein [Function unk 97.68
PRK08116268 hypothetical protein; Validated 97.63
PF08298358 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi 97.63
PRK06526254 transposase; Provisional 97.61
COG0593408 DnaA ATPase involved in DNA replication initiation 97.57
KOG0990360 consensus Replication factor C, subunit RFC5 [Repl 97.57
PRK05707328 DNA polymerase III subunit delta'; Validated 97.56
PRK08181269 transposase; Validated 97.54
KOG1808 1856 consensus AAA ATPase containing von Willebrand fac 97.53
COG2607287 Predicted ATPase (AAA+ superfamily) [General funct 97.52
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 97.5
COG0542 786 clpA ATP-binding subunits of Clp protease and DnaK 97.48
TIGR00602 637 rad24 checkpoint protein rad24. This family is bas 97.46
PRK07952244 DNA replication protein DnaC; Validated 97.46
PF00910107 RNA_helicase: RNA helicase; InterPro: IPR000605 He 97.46
COG1484254 DnaC DNA replication protein [DNA replication, rec 97.39
PRK09183259 transposase/IS protein; Provisional 97.38
PRK06835329 DNA replication protein DnaC; Validated 97.35
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 97.33
COG1618179 Predicted nucleotide kinase [Nucleotide transport 97.3
KOG1514767 consensus Origin recognition complex, subunit 1, a 97.29
PRK08769319 DNA polymerase III subunit delta'; Validated 97.27
KOG2680454 consensus DNA helicase TIP49, TBP-interacting prot 97.21
KOG0736 953 consensus Peroxisome assembly factor 2 containing 97.2
PRK06871325 DNA polymerase III subunit delta'; Validated 97.2
PRK06921266 hypothetical protein; Provisional 97.2
PF05272198 VirE: Virulence-associated protein E; InterPro: IP 97.17
KOG2035351 consensus Replication factor C, subunit RFC3 [Cell 97.14
PF13148378 DUF3987: Protein of unknown function (DUF3987) 97.13
PF13654509 AAA_32: AAA domain; PDB: 3K1J_B. 97.09
PF03266168 NTPase_1: NTPase; InterPro: IPR004948 This entry r 97.01
PRK06964342 DNA polymerase III subunit delta'; Validated 96.97
KOG2170344 consensus ATPase of the AAA+ superfamily [General 96.92
PHA02774613 E1; Provisional 96.91
PRK07993334 DNA polymerase III subunit delta'; Validated 96.89
PRK08699325 DNA polymerase III subunit delta'; Validated 96.87
PRK06090319 DNA polymerase III subunit delta'; Validated 96.81
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 96.64
PHA02624647 large T antigen; Provisional 96.57
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309127 Torsin: Torsin; InterPro: IPR010448 This family co 96.51
COG3854308 SpoIIIAA ncharacterized protein conserved in bacte 96.5
PRK05917290 DNA polymerase III subunit delta'; Validated 96.47
KOG1969 877 consensus DNA replication checkpoint protein CHL12 96.45
TIGR01613304 primase_Cterm phage/plasmid primase, P4 family, C- 96.43
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 96.36
PF03969362 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 96.24
PRK13695174 putative NTPase; Provisional 96.04
COG4930683 Predicted ATP-dependent Lon-type protease [Posttra 95.92
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 95.79
PF03215519 Rad17: Rad17 cell cycle checkpoint protein 95.73
PF13671143 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 95.73
KOG0735 952 consensus AAA+-type ATPase [Posttranslational modi 95.71
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 95.7
KOG3595 1395 consensus Dyneins, heavy chain [Cytoskeleton] 95.64
PF01443234 Viral_helicase1: Viral (Superfamily 1) RNA helicas 95.57
PRK14532188 adenylate kinase; Provisional 95.54
PRK04296190 thymidine kinase; Provisional 95.54
PRK10536262 hypothetical protein; Provisional 95.52
PF00519432 PPV_E1_C: Papillomavirus helicase; InterPro: IPR00 95.51
PRK13947171 shikimate kinase; Provisional 95.43
KOG3347176 consensus Predicted nucleotide kinase/nuclear prot 95.38
PRK08118167 topology modulation protein; Reviewed 95.38
PF13173128 AAA_14: AAA domain 95.36
COG0563178 Adk Adenylate kinase and related kinases [Nucleoti 95.33
PHA00729226 NTP-binding motif containing protein 95.18
cd00464154 SK Shikimate kinase (SK) is the fifth enzyme in th 95.14
PRK03839180 putative kinase; Provisional 95.14
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 95.1
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 95.1
PRK14530215 adenylate kinase; Provisional 95.09
PRK00625173 shikimate kinase; Provisional 95.05
TIGR01359183 UMP_CMP_kin_fam UMP-CMP kinase family. This subfam 95.04
PRK07132299 DNA polymerase III subunit delta'; Validated 94.99
PRK00131175 aroK shikimate kinase; Reviewed 94.99
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 94.96
PRK07261171 topology modulation protein; Provisional 94.89
PTZ00301210 uridine kinase; Provisional 94.88
PTZ00088229 adenylate kinase 1; Provisional 94.86
PRK13949169 shikimate kinase; Provisional 94.83
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 94.8
TIGR00235207 udk uridine kinase. Model contains a number of lon 94.76
PF13191185 AAA_16: AAA ATPase domain; PDB: 2V1U_A. 94.75
PF1324576 AAA_19: Part of AAA domain 94.71
PRK05818261 DNA polymerase III subunit delta'; Validated 94.71
PF13238129 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB 94.68
cd0201969 NK Nucleoside/nucleotide kinase (NK) is a protein 94.67
PRK14531183 adenylate kinase; Provisional 94.65
cd01428194 ADK Adenylate kinase (ADK) catalyzes the reversibl 94.64
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 94.62
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 94.6
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 94.5
TIGR01360188 aden_kin_iso1 adenylate kinase, isozyme 1 subfamil 94.49
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 94.48
PRK13889 988 conjugal transfer relaxase TraA; Provisional 94.48
PRK06762166 hypothetical protein; Provisional 94.4
PRK10875615 recD exonuclease V subunit alpha; Provisional 94.38
PRK06217183 hypothetical protein; Validated 94.32
PRK05057172 aroK shikimate kinase I; Reviewed 94.21
PRK10078186 ribose 1,5-bisphosphokinase; Provisional 94.21
PRK14709469 hypothetical protein; Provisional 94.19
cd02021150 GntK Gluconate kinase (GntK) catalyzes the phospho 94.19
PRK14528186 adenylate kinase; Provisional 94.14
PF12780268 AAA_8: P-loop containing dynein motor region D4; I 94.14
TIGR01313163 therm_gnt_kin carbohydrate kinase, thermoresistant 94.14
PRK14526211 adenylate kinase; Provisional 94.12
PRK13826 1102 Dtr system oriT relaxase; Provisional 94.06
PRK02496184 adk adenylate kinase; Provisional 94.02
TIGR01351210 adk adenylate kinases. Adenylate kinase (EC 2.7.4. 94.02
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 94.0
cd00227175 CPT Chloramphenicol (Cm) phosphotransferase (CPT). 93.97
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 93.97
COG0703172 AroK Shikimate kinase [Amino acid transport and me 93.94
COG4619223 ABC-type uncharacterized transport system, ATPase 93.92
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 93.87
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 93.83
PLN02200234 adenylate kinase family protein 93.83
PRK05439311 pantothenate kinase; Provisional 93.82
cd02024187 NRK1 Nicotinamide riboside kinase (NRK) is an enzy 93.8
PF06048286 DUF927: Domain of unknown function (DUF927); Inter 93.79
cd02020147 CMPK Cytidine monophosphate kinase (CMPK) catalyze 93.71
COG1116248 TauB ABC-type nitrate/sulfonate/bicarbonate transp 93.7
cd03222177 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi 93.64
PRK00279215 adk adenylate kinase; Reviewed 93.59
PRK12608380 transcription termination factor Rho; Provisional 93.55
PF08477119 Miro: Miro-like protein; InterPro: IPR013684 Mitoc 93.54
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 93.48
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 93.47
PF05729166 NACHT: NACHT domain 93.45
TIGR02322179 phosphon_PhnN phosphonate metabolism protein/1,5-b 93.44
TIGR00150133 HI0065_YjeE ATPase, YjeE family. Members of this f 93.44
PLN02459261 probable adenylate kinase 93.42
PRK08233182 hypothetical protein; Provisional 93.38
PRK08939306 primosomal protein DnaI; Reviewed 93.28
PRK03731171 aroL shikimate kinase II; Reviewed 93.26
COG1936180 Predicted nucleotide kinase (related to CMP and AM 93.19
COG1102179 Cmk Cytidylate kinase [Nucleotide transport and me 93.11
PHA02530300 pseT polynucleotide kinase; Provisional 93.1
PF1355562 AAA_29: P-loop containing region of AAA domain 93.08
TIGR01618220 phage_P_loop phage nucleotide-binding protein. Thi 93.06
PLN02674244 adenylate kinase 93.05
PRK14529223 adenylate kinase; Provisional 93.05
KOG2227529 consensus Pre-initiation complex, subunit CDC6, AA 93.03
PRK14527191 adenylate kinase; Provisional 93.03
PRK13948182 shikimate kinase; Provisional 92.99
PRK13946184 shikimate kinase; Provisional 92.91
COG1120258 FepC ABC-type cobalamin/Fe3+-siderophores transpor 92.84
PRK13851344 type IV secretion system protein VirB11; Provision 92.8
COG1126240 GlnQ ABC-type polar amino acid transport system, A 92.74
TIGR00554290 panK_bact pantothenate kinase, bacterial type. Sho 92.72
TIGR03263180 guanyl_kin guanylate kinase. Members of this famil 92.71
cd00071137 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. 92.69
PRK07276290 DNA polymerase III subunit delta'; Validated 92.61
PRK00300205 gmk guanylate kinase; Provisional 92.49
PRK12339197 2-phosphoglycerate kinase; Provisional 92.43
PRK04040188 adenylate kinase; Provisional 92.35
cd02027149 APSK Adenosine 5'-phosphosulfate kinase (APSK) cat 92.23
PRK01184184 hypothetical protein; Provisional 92.19
COG3839338 MalK ABC-type sugar transport systems, ATPase comp 92.13
KOG0060659 consensus Long-chain acyl-CoA transporter, ABC sup 92.11
COG4088261 Predicted nucleotide kinase [Nucleotide transport 92.09
PF13521163 AAA_28: AAA domain; PDB: 1LW7_A. 92.03
COG1485367 Predicted ATPase [General function prediction only 91.94
TIGR02788308 VirB11 P-type DNA transfer ATPase VirB11. The VirB 91.91
PF13479213 AAA_24: AAA domain 91.9
TIGR03574249 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem 91.79
PF01926116 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I 91.77
PRK03846198 adenylylsulfate kinase; Provisional 91.77
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 91.75
PRK04182180 cytidylate kinase; Provisional 91.74
PF00406151 ADK: Adenylate kinase; InterPro: IPR000850 Adenyla 91.73
cd04177168 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the 91.65
TIGR02237209 recomb_radB DNA repair and recombination protein R 91.61
cd02023198 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. 91.59
TIGR02173171 cyt_kin_arch cytidylate kinase, putative. Proteins 91.56
PRK05541176 adenylylsulfate kinase; Provisional 91.56
PRK06547172 hypothetical protein; Provisional 91.55
COG4178604 ABC-type uncharacterized transport system, permeas 91.54
PRK09825176 idnK D-gluconate kinase; Provisional 91.43
KOG0064728 consensus Peroxisomal long-chain acyl-CoA transpor 91.38
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 91.3
PF00005137 ABC_tran: ABC transporter This structure is on hol 91.28
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 91.28
PRK12678672 transcription termination factor Rho; Provisional 91.17
cd04119168 RJL RJL (RabJ-Like) subfamily. RJLs are found in m 91.11
PRK13808333 adenylate kinase; Provisional 91.09
PRK05480209 uridine/cytidine kinase; Provisional 91.06
PRK13833323 conjugal transfer protein TrbB; Provisional 90.97
cd04124161 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily 90.96
cd04137180 RheB Rheb (Ras Homolog Enriched in Brain) subfamil 90.93
COG3842352 PotA ABC-type spermidine/putrescine transport syst 90.9
TIGR00231161 small_GTP small GTP-binding protein domain. This m 90.89
smart00175164 RAB Rab subfamily of small GTPases. Rab GTPases ar 90.88
cd03281213 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS 90.84
PRK13709 1747 conjugal transfer nickase/helicase TraI; Provision 90.82
cd01124187 KaiC KaiC is a circadian clock protein primarily f 90.81
cd00154159 Rab Rab family. Rab GTPases form the largest famil 90.76
PRK08356195 hypothetical protein; Provisional 90.74
cd03255218 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of 90.73
PF00485194 PRK: Phosphoribulokinase / Uridine kinase family; 90.7
cd04155173 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f 90.68
PRK00889175 adenylylsulfate kinase; Provisional 90.61
cd00157171 Rho Rho (Ras homology) family. Members of the Rho 90.54
PF03193161 DUF258: Protein of unknown function, DUF258; Inter 90.53
cd01878204 HflX HflX subfamily. A distinct conserved domain w 90.5
COG4525259 TauB ABC-type taurine transport system, ATPase com 90.49
cd04136163 Rap_like Rap-like subfamily. The Rap subfamily con 90.48
PLN02165334 adenylate isopentenyltransferase 90.48
smart00487201 DEXDc DEAD-like helicases superfamily. 90.47
cd01862172 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th 90.47
cd04113161 Rab4 Rab4 subfamily. Rab4 has been implicated in n 90.46
PRK14737186 gmk guanylate kinase; Provisional 90.37
cd04138162 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, 90.31
cd00820107 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC 90.31
cd01867167 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp 90.31
cd03264211 ABC_drug_resistance_like ABC-type multidrug transp 90.27
KOG0066807 consensus eIF2-interacting protein ABC50 (ABC supe 90.26
cd03292214 ABC_FtsE_transporter FtsE is a hydrophilic nucleot 90.26
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 90.25
cd03301213 ABC_MalK_N The N-terminal ATPase domain of the mal 90.24
cd03258233 ABC_MetN_methionine_transporter MetN (also known a 90.22
cd04160167 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote 90.19
cd03269210 ABC_putative_ATPase This subfamily is involved in 90.17
TIGR03608206 L_ocin_972_ABC putative bacteriocin export ABC tra 90.15
TIGR00017217 cmk cytidylate kinase. This family consists of cyt 90.14
PRK08154309 anaerobic benzoate catabolism transcriptional regu 90.14
PRK13894319 conjugal transfer ATPase TrbB; Provisional 90.05
TIGR02315243 ABC_phnC phosphonate ABC transporter, ATP-binding 90.03
cd03216163 ABC_Carb_Monos_I This family represents the domain 90.02
PF01057271 Parvo_NS1: Parvovirus non-structural protein NS1; 89.96
PRK13541195 cytochrome c biogenesis protein CcmA; Provisional 89.96
cd04156160 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su 89.96
PRK13975196 thymidylate kinase; Provisional 89.94
PRK05800170 cobU adenosylcobinamide kinase/adenosylcobinamide- 89.89
cd03262213 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- 89.88
PRK14712 1623 conjugal transfer nickase/helicase TraI; Provision 89.84
cd04101164 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove 89.83
TIGR00960216 3a0501s02 Type II (General) Secretory Pathway (IIS 89.82
cd01860163 Rab5_related Rab5-related subfamily. This subfamil 89.8
cd03246173 ABCC_Protease_Secretion This family represents the 89.79
smart00173164 RAS Ras subfamily of RAS small GTPases. Similar in 89.78
cd03247178 ABCC_cytochrome_bd The CYD subfamily implicated in 89.77
TIGR02673214 FtsE cell division ATP-binding protein FtsE. This 89.75
cd03226205 ABC_cobalt_CbiO_domain2 Domain II of the ABC compo 89.72
PRK06581263 DNA polymerase III subunit delta'; Validated 89.7
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 89.67
COG3378517 Phage associated DNA primase [General function pre 89.65
cd03266218 ABC_NatA_sodium_exporter NatA is the ATPase compon 89.64
cd01394218 radB RadB. The archaeal protein radB shares simila 89.59
cd04117161 Rab15 Rab15 subfamily. Rab15 colocalizes with the 89.59
cd00876160 Ras Ras family. The Ras family of the Ras superfam 89.58
PRK14738206 gmk guanylate kinase; Provisional 89.53
cd03263220 ABC_subfamily_A The ABCA subfamily mediates the tr 89.52
TIGR01166190 cbiO cobalt transport protein ATP-binding subunit. 89.51
cd04157162 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub 89.5
cd03230173 ABC_DR_subfamily_A This family of ATP-binding prot 89.48
cd03257228 ABC_NikE_OppD_transporters The ABC transporter sub 89.46
cd04159159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was id 89.45
PRK09361225 radB DNA repair and recombination protein RadB; Pr 89.43
cd04145164 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf 89.38
COG1072283 CoaA Panthothenate kinase [Coenzyme metabolism] 89.37
TIGR03410230 urea_trans_UrtE urea ABC transporter, ATP-binding 89.36
cd03261235 ABC_Org_Solvent_Resistant ABC (ATP-binding cassett 89.36
cd01868165 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a 89.35
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 89.35
PRK13540200 cytochrome c biogenesis protein CcmA; Provisional 89.34
TIGR02211221 LolD_lipo_ex lipoprotein releasing system, ATP-bin 89.34
cd03224222 ABC_TM1139_LivF_branched LivF (TM1139) is part of 89.32
PRK05537568 bifunctional sulfate adenylyltransferase subunit 1 89.31
cd03265220 ABC_DrrA DrrA is the ATP-binding protein component 89.31
KOG1970 634 consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 89.31
cd03229178 ABC_Class3 This class is comprised of all BPD (Bin 89.31
cd02022179 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2 89.3
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-141  Score=1131.55  Aligned_cols=741  Identities=60%  Similarity=0.959  Sum_probs=664.2

Q ss_pred             ChHHHHHHHHHHHHHhcch----hhHHHHHHHHHcCCcEEEEechhHhhhCCChHHHHhhCHHHHHHHHHHHHHHHHHhh
Q 004502            4 SQQEFQERKREFYDFLELS----IYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNI   79 (748)
Q Consensus         4 ~~~~~~~~~~~f~~Fl~~~----~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~l~~~P~~~l~~~~~ai~e~~~~~   79 (748)
                      .+..+.+..+.|.+||++.    .|.+.|..|++.+..+|+||++||+.|++++|..|+.+|.++++.|++|+.++...+
T Consensus         6 ~d~~~~e~~r~f~efLd~~~D~~iy~e~i~~~~~~~~~RlIvNv~dlr~~~~~~A~glL~~p~~~~~~f~~AL~~~~~~~   85 (818)
T KOG0479|consen    6 EDARFRERVRDFIEFLDDEEDADIYQEAIKKLLNEGQHRLIVNVDDLREFNRERASGLLENPAEEVPPFEDALTDAASRI   85 (818)
T ss_pred             HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHhhhcCcceEEEEhHHHHHhHHHHHHhHhhChHhhhhhHHHHHHHHHhcc
Confidence            4667788889999999863    899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceEEEEeeCCCcccccccccCCccCCCcEEEEEEEEEEecccceeEEEEEEeecCCCceeeeeeecccCCCC
Q 004502           80 DPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTG  159 (748)
Q Consensus        80 ~~~~~~~~~~i~v~~~~~~~~~~~~~R~L~s~~igkLV~v~GiV~r~S~V~p~l~~~~f~C~~Cg~~~~~~~~~~~~~~~  159 (748)
                      ++.|......++|+|.+.|+.+.++||.|.|.++|++|||+||||+||-|||++.+++|+|+..+.+..+.|.+.|+...
T Consensus        86 d~~~~~~~~~~~vGfeGsFG~~hv~PRtL~s~~lg~mVcvEGIVTkcSlvRPKvvkSVHYcpaT~~~~~r~Y~D~T~~~~  165 (818)
T KOG0479|consen   86 DDVYAKVKELFFVGFEGSFGNRHVNPRTLTSVYLGKMVCVEGIVTKCSLVRPKVVKSVHYCPATNKFHERDYRDATMLTT  165 (818)
T ss_pred             cchhhhhccceEEEeeeeccccccChhhHHHHHhCceEEeeeeeeeeeeechhhhheeeeccccCcchhhhhcchheecc
Confidence            99888888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCeeEEecCceeeeeeeEEEeecCCCCCCCCCCCceEEeeeecccccccCCCCEEEEEEEEeecCCC
Q 004502          160 VPTGSVYPTRDEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGK  239 (748)
Q Consensus       160 ~p~~~~~p~~~~~g~~~~~~~~~s~f~d~Q~i~iQE~~e~~~~G~~Prsi~V~l~~dLv~~~~pGd~V~v~Gi~~~~~~~  239 (748)
                      +|.+.+||+++.+||++.++++.|.|.|||.|.|||+||..|+|++||+++|+|.+||||+|||||||.|+|+|++.|++
T Consensus       166 ~p~~svYPT~De~gN~L~TEyGlS~ykDHQtitiQEmPE~APaGQLPRSVDvilddDLVD~~KPGDRV~ivG~yr~Lp~k  245 (818)
T KOG0479|consen  166 LPTGSVYPTRDEDGNLLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDRVKPGDRVNIVGIYRSLPGK  245 (818)
T ss_pred             cccCCcCCccCCCCCeeeEeecceeeecccEEEeeeccccCCCCCCCcceeEEecccccccCCCCCeeEEEEEEeeccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCcccceeEEEEEEeccccccccCCCCCCCHHHHHHHHHHhcCccHHHHHHHcccCcccChHHHHHHHHHHHhCCcccc
Q 004502          240 SKGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKN  319 (748)
Q Consensus       240 ~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~gg~~~~  319 (748)
                      +++..++.|++++.||||+.+.++. ...++.+++..|+++++..|+|+.|+.|+||+||||+.+|+||+|.|+||++|+
T Consensus       246 ~~g~tsg~FRTvliaNni~~l~ke~-~~~~t~~Di~~i~klsk~kdiFdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~  324 (818)
T KOG0479|consen  246 SNGNTSGTFRTVLIANNIELLSKEA-APDFTDEDIRNIKKLSKKKDIFDLLARSLAPSIYGHDYVKKAILLLLLGGVEKN  324 (818)
T ss_pred             cCCcccceeEEEEEeccHHhhcccc-cccCChhhHHHHHHHHhcCCHHHHHhhccCcccccHHHHHHHHHHHHhccceec
Confidence            8888899999999999999988876 678999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccCcccEEEECCCCccHHHHHHHHHHhCCCcEEeccCCCCCcccceeeeecccccceeeccceEeeccCceeee
Q 004502          320 LKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCI  399 (748)
Q Consensus       320 ~~~~~~~rg~i~iLL~G~pGtGKS~l~r~i~~~~~~~~~~~g~~~~~~glt~~~~~~~~~g~~~~~~G~l~la~~gil~I  399 (748)
                      +++|+|+||||||||+|+|.++||||+|++.+.+|+++.++|++++++||||+++.|.++|+..+++|++++||.||+||
T Consensus       325 L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLEAGAMVLADRGVVCI  404 (818)
T KOG0479|consen  325 LENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCI  404 (818)
T ss_pred             cCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccchhhhhcCceEEccCceEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCChhhHHHHHHHHhhceEEeeccceeEEeccceeEeeecCCCCCccCCCCCccccCCCChhhhccccEEEEecCC
Q 004502          400 DEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQ  479 (748)
Q Consensus       400 DEidk~~~~~~~~L~e~me~~~i~i~k~g~~~~l~~~~~iiaa~Np~~g~~~~~~~~~~ni~l~~~LlsRFdli~~~~d~  479 (748)
                      ||||||+.-++.++||+||||+++|+|+|++++||+||+||||+||.+|+||.++++.+||.||.+|||||||+|+++|.
T Consensus       405 DEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~  484 (818)
T KOG0479|consen  405 DEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDD  484 (818)
T ss_pred             hhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHhHHHHHHHHHhhhccccC-CCCCCCCCCC--CCCCCCC-ccccchhhHHhhhhhccccccccCCcCCCCCHHHHH
Q 004502          480 MDPDIDRRISDHVLRMHRYRSVM-DGGEGGLDGS--SRYGRED-EVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLK  555 (748)
Q Consensus       480 ~~~~~d~~ia~~il~~~~~~~~~-~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lr  555 (748)
                      .+.+.|+.|++|+|++|+++.+- ..|++.+.++  +..+.++ +...++..|.++|..||++..  .+....++.+++|
T Consensus       485 ~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k--~~~~k~lti~F~r  562 (818)
T KOG0479|consen  485 IDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAK--QQHEKLLTIDFMR  562 (818)
T ss_pred             ccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhcccc--ccccceeeHHHHH
Confidence            99999999999999999987651 1233333321  1111122 233457799999999998553  3356789999999


Q ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcccChhhhhhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004502          556 KYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKMKLNRKISKSDVEAALKAL  635 (748)
Q Consensus       556 kyi~~ar~~~~P~ls~ea~~~i~~~y~~lR~~~~~~~~~~~~~~t~R~LesliRla~A~Akl~~~~~V~~~Dv~~Ai~l~  635 (748)
                      |||.|||.+++|+|++||.++|.+.|..||+.....+..++.|+|+|+||+|||||.||||+++|++|+.+|++.|+.|+
T Consensus       563 KYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll  642 (818)
T KOG0479|consen  563 KYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLL  642 (818)
T ss_pred             HHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHH
Confidence            99999999999999999999999999999998765544678999999999999999999999999999999999999999


Q ss_pred             HHhhhhcchhhhhHHHHHH--------h---hhhhcC-------C-CCCCCCCC---------------------C----
Q 004502          636 NFAIYHKELTEMEEREQER--------Q---REQEKN-------P-RAEHPGGN---------------------D----  671 (748)
Q Consensus       636 ~~sl~~~~~~~~~~~~~~~--------~---~~~~~~-------~-~~~~~~~~---------------------~----  671 (748)
                      ++++++.......+.++..        +   +++++.       + +....+++                     +    
T Consensus       643 ~fA~f~e~v~~~~~~~k~~r~~~~~~~d~e~d~~~~~d~~~~~~~~r~~~~~a~~~~~~i~~~q~~~~~~~~d~~d~m~~  722 (818)
T KOG0479|consen  643 RFALFKEKVKPKDDKEKKKREEASDAEDEEQDESDREDEERRSEPRRSTAPGADTDERRIDRVQHALYDASEDTKDPMSL  722 (818)
T ss_pred             HHHHHhhhccccccHHHHhhhhhcccccccccchhccChhhcccccccccccccCccccccccccchhhccccccccchh
Confidence            9999996555433322110        0   000000       0 00000000                     0    


Q ss_pred             --------CCC-----------CCCCcHHHHHHHHHHHHHHhhcccCccccHHHHHHHHhccc-CCCCCHHHHHHHHHHH
Q 004502          672 --------RAD-----------HSTNDNERMEAFNSVFGQHMRANRLDLITITELEEIVNTGM-DAHYSRAEITFLLEKL  731 (748)
Q Consensus       672 --------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l  731 (748)
                              ..|           .+.....|++.|...+..++.....+.++++.+.+.++... +++|+.+++..+|++|
T Consensus       723 ~~~~~~~~~~~~~~s~~~~~~~~a~l~~~r~~~f~~~~~~~~~~~~e~~~~l~~i~esin~~~~~~~fsa~E~~a~l~~m  802 (818)
T KOG0479|consen  723 VADFMKYLPTGVSVSVETVETTHARLSEARLELFENGLIRLFNTAREDSISLADITESINNQSGEEKFSADEIKAALEKM  802 (818)
T ss_pred             hHHHhhhcCCCcccchhhccccccccchhhHHHHHHHHHhhhhhcchhhhhHHHHHHHHhccCccCCcCHHHHHHHHHHh
Confidence                    001           12235677888888777777776678899999999999966 7899999999999999


Q ss_pred             HhcCCEEEeCCEEEEe
Q 004502          732 QDENRVMIADGIVHMI  747 (748)
Q Consensus       732 ~~~~~~~~~~~~v~~i  747 (748)
                      .++|.+|+++|+||+|
T Consensus       803 ~ddN~~Mvad~~v~~I  818 (818)
T KOG0479|consen  803 QDDNKVMVADDKVFLI  818 (818)
T ss_pred             hcccceeeecCeEEeC
Confidence            9999999999999997

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair] Back     alignment and domain information
>PTZ00111 DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair] Back     alignment and domain information
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] Back     alignment and domain information
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair] Back     alignment and domain information
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair] Back     alignment and domain information
>smart00350 MCM minichromosome maintenance proteins Back     alignment and domain information
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Back     alignment and domain information
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>smart00763 AAA_PrkA PrkA AAA domain Back     alignment and domain information
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK15115 response regulator GlrR; Provisional Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>TIGR01818 ntrC nitrogen regulation protein NR(I) Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK10365 transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PHA01747 putative ATP-dependent protease Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PF13337 Lon_2: Putative ATP-dependent Lon protease Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H Back     alignment and domain information
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02653 Lon_rel_chp conserved hypothetical protein Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15455 PrkA family serine protein kinase; Provisional Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG2545 consensus Conserved membrane protein [Function unknown] Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins Back     alignment and domain information
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF13148 DUF3987: Protein of unknown function (DUF3987) Back     alignment and domain information
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B Back     alignment and domain information
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] Back     alignment and domain information
>PHA02774 E1; Provisional Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins Back     alignment and domain information
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK05917 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>PF03215 Rad17: Rad17 cell cycle checkpoint protein Back     alignment and domain information
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton] Back     alignment and domain information
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases Back     alignment and domain information
>PRK14532 adenylate kinase; Provisional Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species Back     alignment and domain information
>PRK13947 shikimate kinase; Provisional Back     alignment and domain information
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08118 topology modulation protein; Reviewed Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants Back     alignment and domain information
>PRK03839 putative kinase; Provisional Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PRK14530 adenylate kinase; Provisional Back     alignment and domain information
>PRK00625 shikimate kinase; Provisional Back     alignment and domain information
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family Back     alignment and domain information
>PRK07132 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK00131 aroK shikimate kinase; Reviewed Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK07261 topology modulation protein; Provisional Back     alignment and domain information
>PTZ00301 uridine kinase; Provisional Back     alignment and domain information
>PTZ00088 adenylate kinase 1; Provisional Back     alignment and domain information
>PRK13949 shikimate kinase; Provisional Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>TIGR00235 udk uridine kinase Back     alignment and domain information
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PRK05818 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C Back     alignment and domain information
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars Back     alignment and domain information
>PRK14531 adenylate kinase; Provisional Back     alignment and domain information
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PRK06762 hypothetical protein; Provisional Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PRK06217 hypothetical protein; Validated Back     alignment and domain information
>PRK05057 aroK shikimate kinase I; Reviewed Back     alignment and domain information
>PRK10078 ribose 1,5-bisphosphokinase; Provisional Back     alignment and domain information
>PRK14709 hypothetical protein; Provisional Back     alignment and domain information
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate Back     alignment and domain information
>PRK14528 adenylate kinase; Provisional Back     alignment and domain information
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases Back     alignment and domain information
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family Back     alignment and domain information
>PRK14526 adenylate kinase; Provisional Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PRK02496 adk adenylate kinase; Provisional Back     alignment and domain information
>TIGR01351 adk adenylate kinases Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] Back     alignment and domain information
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>PLN02200 adenylate kinase family protein Back     alignment and domain information
>PRK05439 pantothenate kinase; Provisional Back     alignment and domain information
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+) Back     alignment and domain information
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1 Back     alignment and domain information
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor Back     alignment and domain information
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids Back     alignment and domain information
>PRK00279 adk adenylate kinase; Reviewed Back     alignment and domain information
>PRK12608 transcription termination factor Rho; Provisional Back     alignment and domain information
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN Back     alignment and domain information
>TIGR00150 HI0065_YjeE ATPase, YjeE family Back     alignment and domain information
>PLN02459 probable adenylate kinase Back     alignment and domain information
>PRK08233 hypothetical protein; Provisional Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK03731 aroL shikimate kinase II; Reviewed Back     alignment and domain information
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PHA02530 pseT polynucleotide kinase; Provisional Back     alignment and domain information
>PF13555 AAA_29: P-loop containing region of AAA domain Back     alignment and domain information
>TIGR01618 phage_P_loop phage nucleotide-binding protein Back     alignment and domain information
>PLN02674 adenylate kinase Back     alignment and domain information
>PRK14529 adenylate kinase; Provisional Back     alignment and domain information
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK14527 adenylate kinase; Provisional Back     alignment and domain information
>PRK13948 shikimate kinase; Provisional Back     alignment and domain information
>PRK13946 shikimate kinase; Provisional Back     alignment and domain information
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00554 panK_bact pantothenate kinase, bacterial type Back     alignment and domain information
>TIGR03263 guanyl_kin guanylate kinase Back     alignment and domain information
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 Back     alignment and domain information
>PRK07276 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK00300 gmk guanylate kinase; Provisional Back     alignment and domain information
>PRK12339 2-phosphoglycerate kinase; Provisional Back     alignment and domain information
>PRK04040 adenylate kinase; Provisional Back     alignment and domain information
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) Back     alignment and domain information
>PRK01184 hypothetical protein; Provisional Back     alignment and domain information
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] Back     alignment and domain information
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A Back     alignment and domain information
>COG1485 Predicted ATPase [General function prediction only] Back     alignment and domain information
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 Back     alignment and domain information
>PF13479 AAA_24: AAA domain Back     alignment and domain information
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal Back     alignment and domain information
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse Back     alignment and domain information
>PRK03846 adenylylsulfate kinase; Provisional Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>PRK04182 cytidylate kinase; Provisional Back     alignment and domain information
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells Back     alignment and domain information
>cd04177 RSR1 RSR1 subgroup Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 Back     alignment and domain information
>TIGR02173 cyt_kin_arch cytidylate kinase, putative Back     alignment and domain information
>PRK05541 adenylylsulfate kinase; Provisional Back     alignment and domain information
>PRK06547 hypothetical protein; Provisional Back     alignment and domain information
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] Back     alignment and domain information
>PRK09825 idnK D-gluconate kinase; Provisional Back     alignment and domain information
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK12678 transcription termination factor Rho; Provisional Back     alignment and domain information
>cd04119 RJL RJL (RabJ-Like) subfamily Back     alignment and domain information
>PRK13808 adenylate kinase; Provisional Back     alignment and domain information
>PRK05480 uridine/cytidine kinase; Provisional Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>cd04124 RabL2 RabL2 subfamily Back     alignment and domain information
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily Back     alignment and domain information
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00231 small_GTP small GTP-binding protein domain Back     alignment and domain information
>smart00175 RAB Rab subfamily of small GTPases Back     alignment and domain information
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>cd00154 Rab Rab family Back     alignment and domain information
>PRK08356 hypothetical protein; Provisional Back     alignment and domain information
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) Back     alignment and domain information
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 Back     alignment and domain information
>cd04155 Arl3 Arl3 subfamily Back     alignment and domain information
>PRK00889 adenylylsulfate kinase; Provisional Back     alignment and domain information
>cd00157 Rho Rho (Ras homology) family Back     alignment and domain information
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis Back     alignment and domain information
>cd01878 HflX HflX subfamily Back     alignment and domain information
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd04136 Rap_like Rap-like subfamily Back     alignment and domain information
>PLN02165 adenylate isopentenyltransferase Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>cd01862 Rab7 Rab7 subfamily Back     alignment and domain information
>cd04113 Rab4 Rab4 subfamily Back     alignment and domain information
>PRK14737 gmk guanylate kinase; Provisional Back     alignment and domain information
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily Back     alignment and domain information
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis Back     alignment and domain information
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 Back     alignment and domain information
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component Back     alignment and domain information
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK Back     alignment and domain information
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport Back     alignment and domain information
>cd04160 Arfrp1 Arfrp1 subfamily Back     alignment and domain information
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity Back     alignment and domain information
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group Back     alignment and domain information
>TIGR00017 cmk cytidylate kinase Back     alignment and domain information
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein Back     alignment and domain information
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides Back     alignment and domain information
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>cd04156 ARLTS1 ARLTS1 subfamily Back     alignment and domain information
>PRK13975 thymidylate kinase; Provisional Back     alignment and domain information
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated Back     alignment and domain information
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>cd04101 RabL4 RabL4 (Rab-like4) subfamily Back     alignment and domain information
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein Back     alignment and domain information
>cd01860 Rab5_related Rab5-related subfamily Back     alignment and domain information
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain Back     alignment and domain information
>smart00173 RAS Ras subfamily of RAS small GTPases Back     alignment and domain information
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis Back     alignment and domain information
>TIGR02673 FtsE cell division ATP-binding protein FtsE Back     alignment and domain information
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota Back     alignment and domain information
>PRK06581 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>COG3378 Phage associated DNA primase [General function prediction only] Back     alignment and domain information
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>cd04117 Rab15 Rab15 subfamily Back     alignment and domain information
>cd00876 Ras Ras family Back     alignment and domain information
>PRK14738 gmk guanylate kinase; Provisional Back     alignment and domain information
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds Back     alignment and domain information
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit Back     alignment and domain information
>cd04157 Arl6 Arl6 subfamily Back     alignment and domain information
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity Back     alignment and domain information
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) Back     alignment and domain information
>cd04159 Arl10_like Arl10-like subfamily Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily Back     alignment and domain information
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism] Back     alignment and domain information
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE Back     alignment and domain information
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>cd01868 Rab11_like Rab11-like Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein Back     alignment and domain information
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids Back     alignment and domain information
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated Back     alignment and domain information
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin Back     alignment and domain information
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment Back     alignment and domain information
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query748
3f9v_A595 Crystal Structure Of A Near Full-Length Archaeal Mc 6e-99
3f8t_A506 Crystal Structure Analysis Of A Full-Length Mcm Hom 6e-23
1ltl_A279 The Dodecamer Structure Of Mcm From Archaeal M. The 4e-19
2vl6_A268 Structural Analysis Of The Sulfolobus Solfataricus 2e-18
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm: Functional Insights For An Aaa+ Hexameric Helicase Length = 595 Back     alignment and structure 
Iteration: 1

 Score =  358 bits (919), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 228/620 (36%), Positives = 342/620 (55%), Gaps = 60/620 (9%)
Query: 24  YQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNIDPKY 83
           Y + I  ++ +++  LI+  SD+ +F E+L   ++ N    L     A  D    +DP Y
Sbjct: 24  YIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPTY 83
Query: 84  LKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSV--HYCP 141
            ++ E + V   G  + R +  R + S  IG ++ ++GI+ K + V+ ++ K+   H  P
Sbjct: 84  QRDIEKVHVRIVG--IPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHP 141
Query: 142 -TTGSFLTREYRDITSNTGVPTGSVYPTRDEHGNL-LVTEYGLCKYKDHQTLSVQEVPEK 199
                F   E  ++     +PT  + P   + G   L+ E    K  D Q   +QE PE+
Sbjct: 142 DCMQEFEWPEDEEMPEVLEMPT--ICPKCGKPGQFRLIPEK--TKLIDWQKAVIQERPEE 197
Query: 200 SAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTY--KALPGKSKGSVNGVFRTVLIANNV 257
              GQLPR +++I+EDDLVDS +PGDRV + G    K      +GS   VF   +  +++
Sbjct: 198 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGS-RAVFDIYMKVSSI 256
Query: 258 SLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVE 317
            +  K  +  I + ED K IK +A+     D + +S+APSIYGH  +K+A+ L + GGV 
Sbjct: 257 EVSQKVLDEVIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVP 316
Query: 318 KNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQ 377
           K L++ T +RGDI+++++GDP  AKSQ+L+ I  +AP A+ TTG+GS+  GLTAAV  ++
Sbjct: 317 KVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREK 375
Query: 378 ETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARC 437
            TGE  LEAGA+VLAD G+  IDE DKM D+DRVAIHE MEQQTV+IAKAGI A LNAR 
Sbjct: 376 GTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARA 435
Query: 438 SVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISDHVLRMHR 497
           +V+AA NP +G Y      + NI LP ++LSRFDL+FI+ DQ   + DR +++++L +H 
Sbjct: 436 AVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPG-EQDRELANYILDVH- 493
Query: 498 YRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRTQRGQKRDTLTIQFLKKY 557
                                                  GK T     ++ + I  L+KY
Sbjct: 494 --------------------------------------SGKST-----KNIIDIDTLRKY 510
Query: 558 IHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKM 617
           I YA+  + P++T EA   I   + E+R  SS       L IT R LE +IR+S A+AKM
Sbjct: 511 IAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPIL-ITPRQLEALIRISEAYAKM 569
Query: 618 KLNRKISKSDVEAALKALNF 637
            L  ++++ D E A+  +  
Sbjct: 570 ALKAEVTREDAERAINIMRL 589
>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog From Methanopyrus Kandleri Length = 506 Back     alignment and structure
>pdb|1LTL|A Chain A, The Dodecamer Structure Of Mcm From Archaeal M. Thermoautotrophicum Length = 279 Back     alignment and structure
>pdb|2VL6|A Chain A, Structural Analysis Of The Sulfolobus Solfataricus Mcm Protein N-Terminal Domain Length = 268 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query748
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 0.0
3f8t_A506 Predicted ATPase involved in replication control, 1e-144
1ltl_A279 DNA replication initiator (CDC21/CDC54); HET: DNA; 2e-88
2vl6_A268 SSO MCM N-TER, minichromosome maintenance protein 3e-87
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595 Back     alignment and structure
 Score =  782 bits (2023), Expect = 0.0
 Identities = 219/639 (34%), Positives = 337/639 (52%), Gaps = 59/639 (9%)

Query: 10  ERKREFYDFLE-------LSIYQDEIKAMINHKRCRLIVNISDLYAFREDLPPRLLKNPV 62
           + +  F +FL         + Y + I  ++ +++  LI+  SD+ +F E+L   ++ N  
Sbjct: 3   DYRDVFIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTK 62

Query: 63  EYLQPFCDAATDWARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGI 122
             L     A  D    +DP Y ++ E + V   G  + R +  R + S  IG ++ ++GI
Sbjct: 63  IILPILEGALYDHILQLDPTYQRDIEKVHVRIVG--IPRVIELRKIRSTDIGKLITIDGI 120

Query: 123 VTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNT-GVPTGSVYPTRDEHGNLLVTEYG 181
           + K + V+ ++ K+ +           E+ +       +   ++ P   + G   +    
Sbjct: 121 LVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKPGQFRL-IPE 179

Query: 182 LCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALP-GKS 240
             K  D Q   +QE PE+   GQLPR +++I+EDDLVDS +PGDRV + G          
Sbjct: 180 KTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPV 239

Query: 241 KGSVNGVFRTVLIANNVSLLNKEANAPIYTPEDLKSIKKIAERDDTFDLLGNSLAPSIYG 300
           K     VF   +  +++ +  K  +  I + ED K IK +A+     D + +S+APSIYG
Sbjct: 240 KRGSRAVFDIYMKVSSIEVSQKVLDEVIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYG 299

Query: 301 HSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTT 360
           H  +K+A+ L + GGV K L   T +RGDI+++++GDP  AKSQ+L+ I  +AP A+ TT
Sbjct: 300 HWELKEALALALFGGVPKVL-EDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTT 358

Query: 361 GRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQ 420
           G+GS+  GLTAAV  ++ TGE  LEAGA+VLAD G+  IDE DKM D+DRVAIHE MEQQ
Sbjct: 359 GKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQ 418

Query: 421 TVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQM 480
           TV+IAKAGI A LNAR +V+AA NP +G Y      + NI LP ++LSRFDL+FI+ DQ 
Sbjct: 419 TVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQP 478

Query: 481 DPDIDRRISDHVLRMHRYRSVMDGGEGGLDGSSRYGREDEVDTDASVFVKYNRMLHGKRT 540
               DR +++++L +H  +S                                        
Sbjct: 479 GEQ-DRELANYILDVHSGKSTK-------------------------------------- 499

Query: 541 QRGQKRDTLTIQFLKKYIHYAKHRIQPELTDEASEQIATTYAELRNSSSNAKTGGTLPIT 600
                 + + I  L+KYI YA+  + P++T EA   I   + E+R  SS       + IT
Sbjct: 500 ------NIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETP-DSPILIT 552

Query: 601 ARTLETIIRLSTAHAKMKLNRKISKSDVEAALKALNFAI 639
            R LE +IR+S A+AKM L  ++++ D E A+  +   +
Sbjct: 553 PRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLFL 591
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506 Back     alignment and structure
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11 Length = 279 Back     alignment and structure
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus} Length = 268 Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Length = 350 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 748
d1ltla_239 b.40.4.11 (A:) DNA replication initiator (cdc21/cd 2e-56
d1g8pa_333 c.37.1.20 (A:) ATPase subunit of magnesium chelata 4e-09
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 239 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: DNA replication initiator (cdc21/cdc54) N-terminal domain
domain: DNA replication initiator (cdc21/cdc54) N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  191 bits (485), Expect = 2e-56
 Identities = 68/254 (26%), Positives = 114/254 (44%), Gaps = 20/254 (7%)

Query: 9   QERKREFYDFLELSIYQDEIKAMINHK--RCRLIVNISDLYAFREDLPPRLLKNPVEYLQ 66
            +   +F +F  L  Y+D +   I        + V+  DL  F  DL   L++ P + ++
Sbjct: 4   SKTLTKFEEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIR 63

Query: 67  PFCDAATDWARNIDPKYLKEGEHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKC 126
               A  +  R      L++   + + F G  +S  +  R+L S+FIG  V V+GIV K 
Sbjct: 64  AAQQAIRNIDR------LRKNVDLNIRFSG--ISNVIPLRELRSKFIGKFVAVDGIVRKT 115

Query: 127 SLVRPKVVKSVHYCPTTGSFLTREYRDITSNTGVPTGSVYPTRDEHGNLLVTEYGLCKYK 186
             +RP++VK+V  C          +  +T +T + T     +    G          ++ 
Sbjct: 116 DEIRPRIVKAVFECRGCM-----RHHAVTQSTNMITEPSLCSECG-GRSFRLLQDESEFL 169

Query: 187 DHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGKSKGSVNG 246
           D QTL +QE  E  + G+ PR + V++EDDLVD+  PGD V + GT + +  +       
Sbjct: 170 DTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRDER----TK 225

Query: 247 VFRTVLIANNVSLL 260
            F+  +  N    L
Sbjct: 226 RFKNFIYGNYTEFL 239
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query748
d1ltla_239 DNA replication initiator (cdc21/cdc54) N-terminal 100.0
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 100.0
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 99.65
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 99.64
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.63
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 99.56
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 99.5
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.5
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 99.47
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 99.45
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 99.42
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 99.41
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 99.34
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 99.3
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 99.29
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 99.26
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 99.21
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 99.14
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 99.11
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 99.07
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.01
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 99.0
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 98.76
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 98.64
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 98.6
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 98.59
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 98.57
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 98.54
d1svma_362 Papillomavirus large T antigen helicase domain {Si 98.32
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 98.25
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 98.22
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 97.99
d1tuea_205 Replication protein E1 helicase domain {Human papi 97.65
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 97.37
d1u0ja_267 Rep 40 protein helicase domain {Adeno-associated v 97.25
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 96.9
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 96.31
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 95.56
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 95.43
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 95.4
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 95.37
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 95.12
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 95.04
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 94.94
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 94.59
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 94.48
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 94.26
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 94.24
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 93.98
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 93.97
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 93.94
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 93.9
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 93.87
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 93.84
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 93.74
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 93.67
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 93.67
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 93.55
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 93.54
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 93.52
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 93.4
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 93.38
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 93.36
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 93.18
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 93.11
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 93.1
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 92.91
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 92.09
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 91.96
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 91.44
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 91.4
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 91.29
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 91.18
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 90.87
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 90.78
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 90.76
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 90.41
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 89.68
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 89.32
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 89.19
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 88.91
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 88.88
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 88.83
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 88.74
d2fh5b1207 Signal recognition particle receptor beta-subunit 88.48
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 88.37
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 88.37
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 88.32
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 88.24
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 88.11
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 88.0
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 87.96
d1z0ja1167 Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} 87.79
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 87.77
d1x3sa1177 Rab18 {Human (Homo sapiens) [TaxId: 9606]} 87.51
d1c1ya_167 Rap1A {Human (Homo sapiens) [TaxId: 9606]} 87.45
d1ek0a_170 Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T 87.36
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 87.35
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 87.34
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 87.19
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 87.14
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 87.02
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 86.98
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 86.84
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 86.75
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 86.75
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 86.71
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 86.44
d1nrjb_209 Signal recognition particle receptor beta-subunit 86.16
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 86.15
d1u8za_168 Ras-related protein RalA {Cotton-top tamarin (Sagu 86.13
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 86.13
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 86.1
d1h65a_257 Chloroplast protein translocon GTPase Toc34 {Garde 86.08
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 86.03
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 85.99
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 85.94
d1mh1a_183 Rac {Human (Homo sapiens) [TaxId: 9606]} 85.88
d2g3ya1172 GTP-binding protein GEM {Human (Homo sapiens) [Tax 85.85
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 85.61
d2gjsa1168 Rad {Human (Homo sapiens) [TaxId: 9606]} 85.55
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 85.51
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 85.5
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 85.48
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 85.41
d2awna2232 Maltose transport protein MalK, N-terminal domain 85.25
d1kmqa_177 RhoA {Human (Homo sapiens) [TaxId: 9606]} 85.23
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 85.22
d2atxa1185 RhoQ {Human (Homo sapiens) [TaxId: 9606]} 85.2
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 85.17
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 85.15
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 85.12
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 85.04
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 84.94
d1wmsa_174 Rab9a {Human (Homo sapiens) [TaxId: 9606]} 84.88
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 84.82
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 84.66
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 84.48
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 84.46
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 84.4
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 84.14
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 83.97
d2bmja1175 Centaurin gamma 1, G domain {Human (Homo sapiens) 83.97
d1g2912240 Maltose transport protein MalK, N-terminal domain 83.78
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 83.51
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 83.49
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 83.37
d1m7ba_179 RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} 83.29
d1zcba2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 83.2
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 82.97
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 82.93
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 82.85
d2ngra_191 CDC42 {Human (Homo sapiens) [TaxId: 9606]} 82.79
d2bcgy1194 GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi 82.42
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 82.32
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 81.8
d2fu5c1173 Rab8a {Mouse (Mus musculus) [TaxId: 10090]} 81.54
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 81.35
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 81.28
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 81.09
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 81.0
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 80.46
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 80.43
d1i2ma_170 Ran {Human (Homo sapiens) [TaxId: 9606]} 80.34
d1mkya2186 Probable GTPase Der, N-terminal and middle domains 80.33
d1udxa2180 Obg GTP-binding protein middle domain {Thermus the 80.27
d1puia_188 Probable GTPase EngB {Escherichia coli [TaxId: 562 80.12
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 80.04
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: DNA replication initiator (cdc21/cdc54) N-terminal domain
domain: DNA replication initiator (cdc21/cdc54) N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=2.8e-45  Score=323.56  Aligned_cols=233  Identities=28%  Similarity=0.450  Sum_probs=199.2

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHC--CCCEEEEECHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9999999882662269999999985--99499995313731088757899669899999999999999995094332578
Q 004502           10 ERKREFYDFLELSIYQDEIKAMINH--KRCRLIVNISDLYAFREDLPPRLLKNPVEYLQPFCDAATDWARNIDPKYLKEG   87 (748)
Q Consensus        10 ~~~~~f~~Fl~~~~Y~~~i~~~~~~--~~~~l~Id~~dL~~fd~~La~~l~~~P~~~l~~~~~ai~e~~~~~~~~~~~~~   87 (748)
                      +....|.+|+....|.+++.+++..  +.++|.|||.||..|+|+|++.|+++|.+++++|++|+.++..      ....
T Consensus         5 ~~l~~f~e~~~~~~y~~~i~~~~~~~~~~~sl~Vd~~~L~~~~~~L~~~l~~~P~~~l~~~~~ai~~~~~------~~~~   78 (239)
T d1ltla_           5 KTLTKFEEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDR------LRKN   78 (239)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTTCT------TCCC
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHHH------HCCC
T ss_conf             9999999983627689999999971898709999799987469999999998989999999999876775------2357


Q ss_pred             CEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             62899864787663136556774578858999789999436521587788862599961110121356787778887788
Q 004502           88 EHILVGFEGPFVSRCVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHYCPTTGSFLTREYRDITSNTGVPTGSVYP  167 (748)
Q Consensus        88 ~~i~v~i~~~~~~~~~~~r~L~s~~igkLV~v~GiV~r~S~V~p~l~~a~f~C~~Cg~~~~~~~~~~~~~~~~p~~~~~p  167 (748)
                      ..+++++.+.+  ...++|+|++.++||||+|+|+|+|+|.|+|++.+++|.|..||+.....+..  +.+..|.  .||
T Consensus        79 ~~i~vr~~~~~--~~~~ir~l~s~~igkLv~v~GiV~r~s~v~~~~~~~~~~C~~C~~~~~~~~~~--~~~~~p~--~C~  152 (239)
T d1ltla_          79 VDLNIRFSGIS--NVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQST--NMITEPS--LCS  152 (239)
T ss_dssp             CCCEEEEECCS--CBCCGGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEEEEECSS--SSCCCCS--CCT
T ss_pred             CEEEEEECCCC--CCCCHHCCCHHHHCCEEEEEEEEEEECCEEEEEEEEEEECCCCCCEEEEEECC--CEECCCC--CCC
T ss_conf             34999980798--76562003500110399998999993777779999999988888569997169--7153775--577


Q ss_pred             CCCCCCCEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCE
Q ss_conf             98999980687528215620048973127888999998835886660333235699988999989765189988865510
Q 004502          168 TRDEHGNLLVTEYGLCKYKDHQTLSVQEVPEKSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGTYKALPGKSKGSVNGV  247 (748)
Q Consensus       168 ~~~~~g~~~~~~~~~s~f~d~Q~I~iQE~~e~~~~g~~Prsi~v~l~~dLv~~~~pGd~V~v~Gi~~~~~~~~~~~~~~~  247 (748)
                      .|.  ++.|.+.++.|.|+|||+|+|||.|+++|.|++||+++|+|++||||+|+|||+|.|+||+++.+...    .+.
T Consensus       153 ~C~--~~~f~~~~~~s~~~d~Q~i~iQE~~e~~~~G~~Pr~i~v~l~~dlvd~~~pGd~V~i~GI~~~~~~~~----~~~  226 (239)
T d1ltla_         153 ECG--GRSFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRDER----TKR  226 (239)
T ss_dssp             TTC--CCCEEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEEETT----TTE
T ss_pred             CCC--CCCCEECCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCC----CCC
T ss_conf             779--96518713743376628999740424478899996799999603028658999999999998765699----983


Q ss_pred             EEEEEEEECCCCC
Q ss_conf             6999998213333
Q 004502          248 FRTVLIANNVSLL  260 (748)
Q Consensus       248 ~~~~i~a~~i~~~  260 (748)
                      ++.++.|++|+.+
T Consensus       227 ~~~~i~a~~Ie~l  239 (239)
T d1ltla_         227 FKNFIYGNYTEFL  239 (239)
T ss_dssp             EEEEEEEEECCBC
T ss_pred             EEEEEEEEEEEEC
T ss_conf             2799999999979
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure