Citrus Sinensis ID: 004516

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------
Protein Sequence
MDNCTVNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKEFGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGFADKEPGLQCSTTAEGRSAPSMLVGTSAPTNQPDSSLMNLPQYSGMDPSNSTSSPVSQFSGAQPQLENQYKRLRVESLSTIDYTPHALASDNLNRSSLATQHGPGVDRIGGQTQFGLLAELMVNHQIASRRMIGVFSY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHccccccccHHHHHHHHccccccHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHHHcHHHHcccHHHcccccHHHHHHHHHHHHHHHccHHHcccccccccHccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHccEEccc
Coil and Loop (DISEMBL)
MDNCTVNISEELRVAESKKEALRRSFDIArsqsnsvpvftgqwddLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSlsgslnlkkeeLCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLkdkerpydevKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEelnqdpaskdkELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKEFGSIRKAVEDCSKNLLlqaktedpekltssGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAIsgfypphsregdlefDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYrlapafdgeELESLLRIVAQHRqtpklrqtlgfadkepglqcsttaegrsapsmlvgtsaptnqpdsslmnlpqysgmdpsnstsspvsqfsgaqpqleNQYKRLRVeslstidytphalasdnlnrsslatqhgpgvdriggqTQFGLLAELMVNHQIASRRMIGVFSY
Flexible Loop (DISEMBL)
MDNCTVNISEELRVAESKKEALRRSfdiarsqsnsvpvftgqWDDLEEHLDLTKkslekqsndvdvkIRLLDQrakeieskeielvlvgkkiedcngelackkkelglvqKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEhekqlafkeskissmRTLIEEYEevlkdkerpydevkKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQkkyfddvelkkRELNEIGKYieelnqdpaskdKELKFVQQSIKECSkefqwkkeesisteKTIAECSKEVELKKNqfnltqhesnlfqTRTIGYLKELKEKEKHFdslkkgledrlqdleikerefekrvkefelrekefgsirkAVEDCSKNLLlqaktedpekltSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKlrqtlgfadkepglQCSTTAEGRSAPSMLVGTSAPTNQPDSSLMNLPQYSGMDPSNSTSSPVSQFSGAQPQLENQYKRLRVESLSTIDYTPHALASDNLNRSSLATQHGPGVDRIGGQTQFGLLAELMVNHQiasrrmigvfsy
Low Complexity Region (SEG)
MDNCTVNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQlkenelnslsgslnlkkeelCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCetklesekkeleltqssIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLeikerefekrvkefelrekefGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGFADKEPGLQCSTTAEGRSAPSMLVGTSAPTNQPDSSLMNLPQYSGMDPSNSTSSPVSQFSGAQPQLENQYKRLRVESLSTIDYTPHALASDNLNRSSLATQHGPGVDRIGGQTQFGLLAELMVNHQIASRRMIGVFSY
Disordered region (IsUnstruct)
*************************************VFTGQWDDL******************DVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQL***********LNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELRE************************************************KKSLILCE*****************KELWMKF***************************************************************************************************************FNLTQHESNLFQTRTIGYLKE****************************************************C***LL**************GRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIVAQH*******************************************************************************************IDY**********************VDRIGGQTQFGLLAELMVNHQIASRRMIGV***
Disordered Region (DISOPRED)
****TVN********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VLHAI*******************IRRSCILLLEQLS***************KVAGEWK*******ENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGFADKEPGLQCSTTAEGRSAPSMLVGTSAPTNQPDSSLMNLPQYS*******************************ESLSTIDYTPH*****************PGVDRIGGQTQFGLLAELMVNHQIASRRMIGVFSY
Disordered Region (DISEMBL)
MDNCTVNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKEFGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGFADKEPGLQCSTTAEGRSAPSMLVGTSAPTNQPDSSLMNLPQYSG*******************QLENQYKRLRVESLSTIDYTPHALASDNLNRSSLATQHGPGVDRIGGQTQFGLLAELMVNHQIASRRMIGVFSY
Disordered Region (DISPRO)
**NCTVNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKEFGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGFADKEPGLQCSTTAEGRSAPSMLVGTSAPTNQPDSSLMNLPQYSGMDPS********************YKRLRVESLSTID******************QHGPGVDRIGGQTQFGLLAELMVNHQIASRRMIGVFSY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNCTVNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRExxxxxxxxxxxxxxxxxxxxxLCSVQGWINKCQANQKELQLLKNLIKECCDExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKEFGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGFADKEPGLQCSTTAEGRSAPSMLVGTSAPTNQPDSSLMNLPQYSGMDPSNSTSSPVSQFSGAQPQLENQYKRLRVESLSTIDYTPHALASDNLNRSSLATQHGPGVDRIGGQTQFGLLAELMVNHQIASRRMIGVFSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	747
224130844	1006	predicted protein [Populus trichocarpa]	0.705	0.523	0.337	2e-63
449466953	1145	PREDICTED: uncharacterized protein LOC10	0.809	0.528	0.284	7e-57
449524874	888	PREDICTED: uncharacterized LOC101218416,	0.809	0.681	0.282	2e-56
255542460	716	Protein FRIGIDA, putative [Ricinus commu	0.489	0.511	0.318	1e-41
147767145	1701	hypothetical protein VITISV_031269 [Viti	0.368	0.161	0.385	1e-40
224130856	1033	predicted protein [Populus trichocarpa]	0.586	0.424	0.300	3e-38
224130848	954	predicted protein [Populus trichocarpa]	0.736	0.576	0.273	1e-37
356541044	885	PREDICTED: uncharacterized protein LOC10	0.678	0.572	0.262	2e-32
15240463	1181	Frigida-like protein [Arabidopsis thalia	0.757	0.479	0.275	1e-31
297813019	1191	predicted protein [Arabidopsis lyrata su	0.689	0.432	0.279	2e-31

>gi|224130844|ref|XP_002328390.1| predicted protein [Populus trichocarpa] gi|222838105|gb|EEE76470.1| predicted protein [Populus trichocarpa]

 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 201/596 (33%), Positives = 326/596 (54%), Gaps = 69/596 (11%)

Query: 71  LDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSL 130
           +++R KE+E  E E+  V K I +C+ +L  K+KEL  V+  I +C +EL  KE +L  L
Sbjct: 182 VEERLKELEFNEKEVERVRKLIANCDRDLEFKQKELRNVRNLINDCNKELSSKEMDLKML 241

Query: 131 ----SGSLNLKKEELCSVQGWI---NKCQANQKELQLLKNLIKECCDEIELREKKVGEVQ 183
               S      K+EL  ++  I    +    +KEL   K LI+EC  E++  E+++  ++
Sbjct: 242 QVRSSAKFVSNKDELDGIKKSIECSKELDLKKKELDKTKELIQECVKELDSEERELSLIK 301

Query: 184 RSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELE 243
           +SIEE  K    +++ + S+  LI+EY E L+ KE+ +D VKKS+ +   +L+S++ EL 
Sbjct: 302 KSIEESSKDFDSRQNHLGSISVLIDEYTEELEAKEKQHDAVKKSISVRSAELKSKETELR 361

Query: 244 LTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKR 303
             + SIKEL  K   ++EKL+  +  V+    ++ES E+EL+ ++ +   Y  ++E ++R
Sbjct: 362 SIEDSIKELSAKLQQKEEKLDSARQHVKHCARKIESKEEELNKIKGRMNTYVKELESRER 421

Query: 304 ELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKE--- 360
           E N I   IE  +++   K+++LK VQ SI EC KE +  KE+  S +K I ECS+E   
Sbjct: 422 EFNAIQLSIEYRSEELKGKERQLKSVQLSIGECEKELKAMKEQKNSIQKLILECSEELQS 481

Query: 361 ------------------VELKKNQFNLTQ---HESNLFQTRTIGYLKELKEKEKHFDSL 399
                             +ELKK Q +  Q   HESN          K+ +EKEK+ +SL
Sbjct: 482 KEKNLILARESLRECCDDLELKKVQLDSIQRSSHESN----------KKSEEKEKYLNSL 531

Query: 400 KKGLEDRLQDLEIKEREFEKRVKEFELREKEFGSIRKAVEDCSKNLLLQAKTEDPEKLTS 459
           +K L++RL++L +KE +FE+RV E EL+E++   ++++VE   K + L+ +      L+S
Sbjct: 532 EKTLDERLKNLGVKEMQFEERVNEIELKEQQLRLMQQSVEKYRKEVELKEQQLGSNILSS 591

Query: 460 SGRYLQFLLNQHLQKHDSIFCKVFDTIKSAR---------------------DPALLVLH 498
             R  Q   N    KH S     F+   S R                     +PA +VL 
Sbjct: 592 HVRVDQ-TENVRNPKHASSSAFQFNATTSERSSPVVNVCVSEHDLMHHGVSAEPAKVVLD 650

Query: 499 AISGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMR 558
            +  +     ++G   FD S + R  ++LLEQL  V+P+I+ QV++ A K+A  W+K +R
Sbjct: 651 IVQNW-----KKGVTGFDAS-VNRDNVVLLEQLMKVSPKISPQVKEAATKLAVLWEKNIR 704

Query: 559 VAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGFADKE 614
           +  E+S+EVL FL  LA Y L   F  + +  L+R++AQ +Q P++ + LGFADK+
Sbjct: 705 LETEDSMEVLMFLLFLAVYGLVSCFSRDRILRLVRVIAQQKQAPEIFKALGFADKD 760

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466953|ref|XP_004151190.1| PREDICTED: uncharacterized protein LOC101218416 [Cucumis sativus]

 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 203/714 (28%), Positives = 358/714 (50%), Gaps = 109/714 (15%)

Query: 6   VNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVD 65
           + ++  ++++E K+  L ++ +   S+++S  +F+ QW DLE H + T++ +  Q  +V+
Sbjct: 5   LGVASNMKLSEWKQSNLCKAHEQLHSEASSFLLFSLQWKDLETHFESTREMILTQCEEVE 64

Query: 66  VKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGEC-------KR 118
                  +R K I  KE +LV + K I +C+ E+  +K EL  + + I +C       + 
Sbjct: 65  -------RREKAIALKEEKLVDLEKCILECSKEVELRKNELSELNRLIVKCDSAVKGKEM 117

Query: 119 ELQLKENELNSLSGSLNLKKEELCS----VQGWINKCQANQKELQLLKNLIKECCDEIEL 174
           EL+L    L  LS  + +K++ELC     +     + +  +K+ ++++  I +C   +EL
Sbjct: 118 ELELMHERLGVLSKDIKMKEDELCRACRRLSDLEKEFEEKEKDFEMVRERIDDCEHAMEL 177

Query: 175 REKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETK 234
           +E+K+  V + IEE   +   KE  + S+R L+  +EE L  KE+ +D ++ ++     +
Sbjct: 178 KEQKLNGVMQLIEERLMECELKEKSVESIRALLRNHEEELAIKEKQFDAIQMAIKDSNGE 237

Query: 235 LESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKY 294
           L+ ++KELE  Q+ I   W     ++++L+ ++  +++   E++  EQE D M  +    
Sbjct: 238 LKLKEKELETIQNMIATKW-----KEKRLDKIEKTIKVRTEELDLKEQEFDVMWSKLGAL 292

Query: 295 FDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTI 354
            +D+  K+ EL  I   I+E +++   ++K+L   QQSI++C            + EK I
Sbjct: 293 SEDLLSKESELESIKSCIKEHSKELDVQEKQLDGTQQSIRDCQNAVMMLTNYVSTIEKAI 352

Query: 355 AECSKEVELKKNQFN----LTQHESNLF-----QTRTIGY-----LKELKEKEKHFDSLK 400
            ECSKE EL++N  +         SN F     Q  +I       L+ LK +++HF++L+
Sbjct: 353 IECSKEWELEENHHHSLKETVDGNSNDFSSVVEQHGSISLTVDKCLEGLKSQKEHFNALR 412

Query: 401 KGLEDRLQDLEIKEREFEKRVKEF---------------------------------ELR 427
           K +E+R + LE  E  F++R++E                                  ELR
Sbjct: 413 KFIEERSKYLENVENNFKRRMEELNKKDEKVSLYLKEIESLKADMDSQILLLEKDREELR 472

Query: 428 ----------------EKEFGSIRKAVEDCSK---------NLLLQAKTED--------- 453
                           EKE   +R  ++ C++         NL LQ KTE+         
Sbjct: 473 LKEIQHKAPDEELESKEKEINLVRALIQKCNEKVKLIDDPNNLHLQVKTEESGCKPAGSS 532

Query: 454 -----PEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHS 508
                P      G+ L  LL +HL+ HD +  ++  T+K++ DPA LVL A+  FYP H+
Sbjct: 533 NTLHFPTGSALDGKLLLALLCEHLKLHDLVRAELMITLKASSDPAKLVLDAMRWFYPTHT 592

Query: 509 REGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVL 568
              D + D   ++R CI L E L   +P+I   +++EA+++AG WK K+ + VEN  EV+
Sbjct: 593 ESKDAKIDFYNVKRGCIFLSELLLNFSPKITPPLKEEALRLAGLWKAKLVMPVENHAEVV 652

Query: 569 GFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGFADKEPGLQCSTT 622
            FL L+A +RLA  F+  EL+ LL  V+Q++Q  +L + LG  DK   +  + T
Sbjct: 653 AFLLLVANFRLASNFNAGELQILLNSVSQYKQAFELSRALGIGDKSSEVNATPT 706

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524874|ref|XP_004169446.1| PREDICTED: uncharacterized LOC101218416, partial [Cucumis sativus]

 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 202/714 (28%), Positives = 357/714 (50%), Gaps = 109/714 (15%)

Query: 6   VNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVD 65
           + ++  ++++E K+  L ++ +   S+++S  +F+ QW DLE H + T++ +  Q  +V+
Sbjct: 5   LGVASNMKLSEWKQSNLCKAHEQLHSEASSFLLFSLQWKDLETHFESTREMILTQCEEVE 64

Query: 66  VKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGEC-------KR 118
                  +R K I  KE +LV + K I +C+ E+  +K EL  + + I +C       + 
Sbjct: 65  -------RREKAIALKEEKLVDLEKCILECSKEVELRKNELSELNRLIVKCDSAVKGKEM 117

Query: 119 ELQLKENELNSLSGSLNLKKEELCS----VQGWINKCQANQKELQLLKNLIKECCDEIEL 174
           EL+L    L  LS  + +K++ELC     +     + +  +K+ ++++  I +C   +EL
Sbjct: 118 ELELMHERLGVLSKDIKMKEDELCRACRRLSDLEKEFEEKEKDFEMVRERIDDCEHAMEL 177

Query: 175 REKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETK 234
           +E+K+  V + IEE   +   KE  + S+R L+  +EE L  KE+ +D ++ ++     +
Sbjct: 178 KEQKLNGVMQLIEERLMECELKEKSVESIRALLRNHEEELAIKEKQFDAIQMAIKDSNGE 237

Query: 235 LESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKY 294
           L+ ++KELE  Q+ I   W     ++++L+ ++  +++   E++  EQE D M  +    
Sbjct: 238 LKLKEKELETIQNMIATKW-----KEKRLDKIEKTIKVRTEELDLKEQEFDVMWSKLGAL 292

Query: 295 FDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTI 354
            +D+  K+ EL  I   I+E +++   ++K+L   QQSI++C            + EK I
Sbjct: 293 SEDLLSKESELESIKSCIKEHSKELDVQEKQLDGTQQSIRDCQNAVMMLTNYVSTIEKAI 352

Query: 355 AECSKEVELKKNQF---------NLTQHESNLFQTRTIGY-----LKELKEKEKHFDSLK 400
            ECSKE EL++N           N     S + Q  +I       L+ LK +++HF++L+
Sbjct: 353 IECSKEWELEENHHHSLKETVDGNSNDFSSVVEQHGSISLTVDKCLEGLKSQKEHFNALR 412

Query: 401 KGLEDRLQDLEIKEREFEKRVKEF---------------------------------ELR 427
           K +E+R + LE  E  F++R++E                                  ELR
Sbjct: 413 KFIEERSKYLENVENNFKRRMEELNKKDEKVSLYLKEIESLKADMDSQILLLEKDREELR 472

Query: 428 ----------------EKEFGSIRKAVEDCSK---------NLLLQAKTED--------- 453
                           EKE   +R  ++ C++         NL LQ KTE+         
Sbjct: 473 LKEIQHKAPDEELESKEKEINLVRALIQKCNEKVKLIDDPNNLHLQVKTEESGCKPAGSS 532

Query: 454 -----PEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHS 508
                P      G+ L  LL +HL+ HD +  ++  T+K++ DPA LVL A+  FYP H+
Sbjct: 533 NTLHFPTGSALDGKLLLALLCEHLKLHDLVRAELMITLKASSDPAKLVLDAMRWFYPTHT 592

Query: 509 REGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVL 568
              D + D   ++R CI L E L   +P+I   +++EA+++AG WK K+ + VEN  EV+
Sbjct: 593 ESKDAKIDFYNVKRGCIFLSELLLNFSPKITPPLKEEALRLAGLWKAKLVMPVENHAEVV 652

Query: 569 GFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGFADKEPGLQCSTT 622
            FL L+A +RLA  F+  EL+ LL  V+Q++Q  +L + LG  DK   +  + T
Sbjct: 653 AFLLLVANFRLASNFNAGELQILLNSVSQYKQAFELSRALGIGDKSSEVNATPT 706

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542460|ref|XP_002512293.1| Protein FRIGIDA, putative [Ricinus communis] gi|223548254|gb|EEF49745.1| Protein FRIGIDA, putative [Ricinus communis]

 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/427 (31%), Positives = 221/427 (51%), Gaps = 61/427 (14%)

Query: 197 ESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKF 256
           +S  +S+   +EE   + K  E+  DEVKK            +K+LEL Q ++K  + + 
Sbjct: 50  DSTHNSIDVRVEELHSIHKAIEQKLDEVKK-----------REKDLELVQEAVKLRFSEV 98

Query: 257 HSEQEKLELLQGRVRLHEN--EVESLEQ---ELDSMRKQQKKYFDDVELKKRELNEIGKY 311
              +++  L+Q +  LH+   E+E +E+   ELDS+R +       +E K R ++E+   
Sbjct: 99  EEREKEFALIQKK-ELHDRKREIEWIEKSGKELDSVRVE-------IEDKLRAVDEV--- 147

Query: 312 IEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLT 371
                      D  L      I+E + + +     S+S          +++LK+ +    
Sbjct: 148 -----------DNRLTLFNHCIEEKADQVRL----SVS----------KLKLKEKELAFK 182

Query: 372 QHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFE-LREKE 430
                  + +   + K L+ K++        +  + +++E+KE++ E+R +EFE L+EK+
Sbjct: 183 DENLKEKEKKLEEHCKVLRLKDEE-------IHKKFKEVELKEKQLEQRYREFEELKEKQ 235

Query: 431 FGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSAR 490
             S           +   +       +   G+ LQ  LN+  +  DSI  +VF  +  + 
Sbjct: 236 KPSNNNTCVKIEPQITTPSDASLYFTVNMDGKALQIFLNER-EYSDSIRDEVFIALGFSS 294

Query: 491 DPALLVLHAISGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVA 550
           DPA  VL A+ GFYPPH R+GD+EF   ++RRSCILLLEQL  ++PEI+  VR+EA+K++
Sbjct: 295 DPAKFVLDAMQGFYPPHLRKGDMEFKAEVVRRSCILLLEQLMKISPEISPLVRNEAIKLS 354

Query: 551 GEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGF 610
             W  KM++  E+ LEVLGFL LLA+Y LA  FD +EL + L +V QH  +P L   LGF
Sbjct: 355 FSWMTKMKIDAEHPLEVLGFLQLLASYGLASTFDADELLTQLEVVVQHSLSPGLFHALGF 414

Query: 611 ADKEPGL 617
           ADK  G+
Sbjct: 415 ADKISGI 421

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767145|emb|CAN75646.1| hypothetical protein VITISV_031269 [Vitis vinifera]

 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/306 (38%), Positives = 172/306 (56%), Gaps = 31/306 (10%)

Query: 346 ESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLE- 404
           + IS++   AE SK+ +LKK   +L  H S+L  + T+    + ++ + HFD ++  +E 
Sbjct: 5   DQISSKLQFAE-SKKHDLKKAFEDLQSHSSSL-ASLTL----QWEDLQTHFDLVQSSIEL 58

Query: 405 --DRLQDLEIKEREFE----KRVKEFELREKEF-------GSIRKAVEDCSKNLLLQAKT 451
             +RL+  EI+ R  E    +R KE EL+E +        G   + +ED   N  +   +
Sbjct: 59  QFERLKSKEIQLRSLEIALDRRAKELELKEWQLNRPIVPSGVKSEPLEDVPVNNGIDRFS 118

Query: 452 EDPEK---LTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHS 508
            +      +T  GR LQ  LN++   H  +  +VF  ++ + DPA LVL A+ GFYPPH 
Sbjct: 119 SNANLRFCVTMDGRNLQLFLNENADNHGRMGNEVFAALRMSADPAKLVLDAMEGFYPPHL 178

Query: 509 REGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVL 568
           + G +EF+ +++RRSC+LLLEQL+ V P I  QVR+EA ++A EWK KM V V +SLEVL
Sbjct: 179 KNGVVEFEGAVVRRSCVLLLEQLTRVGPPIRPQVREEAARLAHEWKAKMGVEVGDSLEVL 238

Query: 569 GFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGFADKEPGLQCSTTAEGRSA 628
           GFL LL AYRL   FD  E+  L   V QHRQ  +L + LG  D        ++A+    
Sbjct: 239 GFLWLLGAYRLTSDFDKNEILKLFENVVQHRQANELARALGLTD--------SSADCEPR 290

Query: 629 PSMLVG 634
           P ML G
Sbjct: 291 PIMLKG 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130856|ref|XP_002328393.1| predicted protein [Populus trichocarpa] gi|222838108|gb|EEE76473.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 154/512 (30%), Positives = 257/512 (50%), Gaps = 74/512 (14%)

Query: 155 QKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVL 214
           QKE++L    IK+  +E+EL+EK++ E Q+ +E   K+              I+++ E L
Sbjct: 208 QKEVELENKKIKKFFEELELKEKQLLEQQKEVELENKK--------------IKKFFEEL 253

Query: 215 KDKERPYDEVKKSLILCETKLESEKKELELTQ----SSIKELWMKFHSEQEKLELLQGRV 270
           + KE+  +E +   +L E   +  ++ELEL +      ++E + +   +++K+E     V
Sbjct: 254 ESKEKLVEERR---LLKEENSKEWRRELELKEINFGQQVRERYDEIELKEKKVEEEFREV 310

Query: 271 RLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQ 330
            L E  VE   +E++   ++ ++ F +V +K  E  E  K +E   ++   + KE+ F  
Sbjct: 311 ALREERVEKRFREVEEKERRVRELFKEVRVKDDEFRERRKGVELKGREVEERIKEIGFKD 370

Query: 331 QSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQ-------HESNLFQTRTI 383
           + + E  KE   K  ++    K +    +EVE +  +  L +        E  L + +  
Sbjct: 371 RKVGERLKEVGLKDRKAEERLKEVGLKGREVEERVKEIALMEKNVGKRSEEVELNRRKLE 430

Query: 384 GYLKELKEKEKHFDSLKKGLED-------RLQDLEIKEREFEK----------------- 419
              +EL+ K +  + + KG+E        R +  ++K ++ E+                 
Sbjct: 431 EGFRELELKSREVEEIIKGVELKEKELEERCRGFDLKGKQIEEVQLKEKELEERLREVEM 490

Query: 420 -------RVKEFELREKEFGS-----IRKAVEDCS--KNLLLQAKTEDPEKLTSSGRYLQ 465
                  R+KEFEL+EK+        ++    D S   NL    K +        G+ LQ
Sbjct: 491 ENKKCLERIKEFELKEKQVADACNARVKSETVDYSMDANLHFSVKMD--------GKALQ 542

Query: 466 FLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRSCI 525
            LLN+  +  + +  +V   +  + DPA LVL A+ GFYPPH REGD+EF   +++RSC 
Sbjct: 543 ILLNKRCKHDEKMKNEVSIALGLSSDPAKLVLDAMEGFYPPHLREGDVEFKEVVVKRSCN 602

Query: 526 LLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDG 585
           LLLEQL+ ++P I   VR EA K+A  W  KM V  +++L+V+GF +LLAAY LA AFD 
Sbjct: 603 LLLEQLTKISPTIKPHVRKEATKLAFLWMTKMTVDDQHNLDVMGFFYLLAAYGLASAFDS 662

Query: 586 EELESLLRIVAQHRQTPKLRQTLGFADKEPGL 617
           +EL S L I+A++RQ P+  + L   DK PG 
Sbjct: 663 DELISRLVIIARNRQIPEFLRVLELGDKIPGF 694

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130848|ref|XP_002328391.1| predicted protein [Populus trichocarpa] gi|222838106|gb|EEE76471.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 186/680 (27%), Positives = 326/680 (47%), Gaps = 130/680 (19%)

Query: 8   ISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLD---------------- 51
           +S EL+ +E K+E +R++ +  + +++SV +   QW +LE+H D                
Sbjct: 5   VSNELKNSELKQEIVRKTMNELQEKASSVLLLCLQWKELEDHFDSIRGLIQAEKEEVERK 64

Query: 52  ------------LTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIED----- 94
                       + +K +E+  N+V +K +      +E+E KEI     G+K+ +     
Sbjct: 65  ERVVREREREVGVKEKRVEELVNEVTLKDQDFKDWRRELELKEINF---GQKVRERYDEI 121

Query: 95  ---------------CNGELACKK-KELGLVQKRIGECKRELQLKENELNSLSGSLNLKK 138
                             E A K+ KE    ++R+GE  +E+++K++E            
Sbjct: 122 ELKEKKVEEEFREVALREERAEKRFKEAEENERRVGELFKEVRVKDDEFRE--------- 172

Query: 139 EELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKV-------GEVQRSIEEHEK 191
                   W    +  +KEL+L    ++E   EI L+++KV       G   R +EE  K
Sbjct: 173 --------WRKGVELKEKELELKGREVEERIKEIRLKDRKVEESLNELGFKDRKVEERIK 224

Query: 192 QLAFKESKISSMRTLIEEYEEVLKD---KERPYDEVKKSLILCETKLESEKKELELTQSS 248
           ++  K+ K+          EE LK+   K+R   E  K + L +  +E   KE+ L    
Sbjct: 225 EIGLKDRKV----------EERLKEIGFKDRKLGERLKEVGLKDRMVEERLKEVGLKDRK 274

Query: 249 IKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEI 308
           ++E   +  S+  K+      V   +  VE   +E+    ++ ++   +V LK RE+ E 
Sbjct: 275 VEERLKEIGSKDRKVGERLKEVGWKDRMVEERLKEVGLKDRKVEERLKEVGLKGREVEE- 333

Query: 309 GKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQF 368
                        + KE+  +++++ + S+E +  +       + + E  +++ELK  + 
Sbjct: 334 -------------RVKEIALMEKNVGKRSEEVELNR-------RKLEEGFRKLELKSREV 373

Query: 369 NLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLED----------RLQDLEIKEREFE 418
                   L +       K L+E+ + FD   K +E+          +L+++E++ ++  
Sbjct: 374 EEIIEGVELKE-------KILEERCRRFDFKGKQIEEVQLKEKELEEKLREVEMENKKCL 426

Query: 419 KRVKEFELREKEFGSIRKA-VEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQKHDS 477
           +R+KEFEL+EK+      A V+  + +  + A      K+   G+ LQ LLN+  +  + 
Sbjct: 427 ERIKEFELKEKQVADACNARVKSETVDYSMDANLHFSVKM--DGKALQILLNKRCKHDEK 484

Query: 478 IFCKVFDTIKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPE 537
           +  +V   +  + DPA LVL A+ GF+PPH REGD+EF   +++RSC LLLEQL+ ++P 
Sbjct: 485 MKNEVSIALGLSSDPAKLVLDAMEGFHPPHLREGDVEFKEVVVKRSCNLLLEQLTKISPT 544

Query: 538 INAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIVAQ 597
           I   VR EA K+A  W   M V  +++L+VLGF +LLAAY LA AFD +EL S L I+A+
Sbjct: 545 IKPHVRKEATKLAFLWMIMMTVDGQHNLDVLGFFNLLAAYGLASAFDSDELISRLVIIAR 604

Query: 598 HRQTPKLRQTLGFADKEPGL 617
           ++QTP+  + L   DK PG 
Sbjct: 605 NKQTPEFLRVLELGDKIPGF 624

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541044|ref|XP_003538993.1| PREDICTED: uncharacterized protein LOC100783311 [Glycine max]

 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 152/578 (26%), Positives = 293/578 (50%), Gaps = 71/578 (12%)

Query: 102 KKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLL 161
           K+K+L  ++++ G   RE+  KE E + ++  +  +  EL SVQ  I  C+    +L  +
Sbjct: 19  KEKKLVSIKRQFG---REIDAKEREYDVVTRKVEERNRELESVQRRITDCEW---KLDTV 72

Query: 162 KNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPY 221
           + +I E  DE+        + QR I++ +++LA KE+  S +  +I E E+ L+ K+  +
Sbjct: 73  RRMITES-DEV------YQQKQRGIQDSDRELAEKEAHRSLIADMIREREQELRAKDAEF 125

Query: 222 DEV-------KKSLILCETKLESEKKELELTQSS-----------------IKELWMKFH 257
            +V       K  +      L+++K+EL++   S                 IK+L  + +
Sbjct: 126 QQVLDEGMALKNKVAQLNDDLKTKKEELDVVTRSLINEQATETTIKSMRARIKQLLRQPY 185

Query: 258 SEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQ 317
             + K +  +G+ +  E++ +  E+++  ++ +QK+Y  +  +K+ +LNE  K  E   +
Sbjct: 186 ESESKQKQFEGQAKELESKQKHYERQVKELQSKQKQY--EGRVKELKLNE--KLYERKVR 241

Query: 318 DPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNL 377
           +  S++K+ +   + ++   K+ + + +E  S  K   +  KE+   + Q+  +  E N 
Sbjct: 242 ELGSREKQYETRMKELESNEKQCETRMKEVESNAKQYEKRVKELVSHERQYVKSVIELNS 301

Query: 378 FQTRTIGYLKELKEKEKHFDSLKKGLEDR-------LQDLEIKEREFEKRVKEFELREKE 430
            + +  G + +L+ K+  ++ L K LE +       L++LE  E++ ++++K+ E ++ +
Sbjct: 302 KEKQIEGQMVDLESKKNQYEGLVKELESKEARCKVLLKELESIEKKIQEQMKDLEFKKNQ 361

Query: 431 FGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQF---------------LLNQHLQKH 475
             S RK+ E+     L + K+ D +  T++     F               L    L+K+
Sbjct: 362 CESSRKSFEE---EKLSKQKSNDQQHFTNANSASLFNQQNFTGADNSKNLPLFINLLEKY 418

Query: 476 DSIFCKVFDTIKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVA 535
           + +  +V D +++  +P  LVL  I GFY  HSR+G +E+D SI RR C LL+++L   +
Sbjct: 419 ELMCSQVSDALQTFANPTKLVLDTIKGFYTSHSRQGLIEYDASISRRICNLLMDELKKSS 478

Query: 536 PEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIV 595
           P I  +V+ EA+K+A +WK  +    ++ LEVL F   +A Y +  +FD  EL+ LL I+
Sbjct: 479 PVIGIRVKQEAIKLATDWKANLVAGDKDCLEVLDFFKFVATYEIGSSFDAIELQRLLDII 538

Query: 596 AQHRQTPKLRQTLGFADKEPGLQCSTTAEGRSA--PSM 631
           A   QT    Q +G   +    Q S T +GR+   PS+
Sbjct: 539 ALQYQTL---QAIGKIKEPSDNQSSPTIDGRNLHFPSI 573

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240463|ref|NP_198074.1| Frigida-like protein [Arabidopsis thaliana] gi|2191186|gb|AAB61071.1| contains similarity to tropomyosin and kinesin [Arabidopsis thaliana] gi|332006276|gb|AED93659.1| Frigida-like protein [Arabidopsis thaliana]

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 177/642 (27%), Positives = 307/642 (47%), Gaps = 76/642 (11%)

Query: 54  KKSLE--KQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNG-------ELACKKK 104
           ++SLE  K   +V++K + L+Q   ++E    E+ +V + +E           E+  K+K
Sbjct: 288 RRSLELIKTQGEVELKGKQLEQMDIDLERHRGEVNVVMEHLEKSQTRSRELAEEIERKRK 347

Query: 105 ELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNL 164
           EL  V  +  E  + ++L E EL      L+++  EL S +  ++    + + +  L N 
Sbjct: 348 ELTAVLDKTAEYGKTIELVEEELALQQKLLDIRSSELVSKKKELDGLSLDLELVNSLNNE 407

Query: 165 IKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEV 224
           +KE    IE + K++ +++R I+E       +     S++ L+EE+ E L  KE  ++E+
Sbjct: 408 LKETVQRIESKGKELEDMERLIQE-------RSGHNESIKLLLEEHSEELAIKEERHNEI 460

Query: 225 KKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQEL 284
            +++     ++ S++K       +I++L  K HS+Q KL+  +  +     E+ S E EL
Sbjct: 461 AEAVRKLSLEIVSKEK-------TIQQLSEKQHSKQTKLDSTEKCLEETTAELVSKENEL 513

Query: 285 DSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKK 344
            S++   ++   + E+K++EL               S  +E+K +Q S+K+    FQ K+
Sbjct: 514 CSVKDTYRECLQNWEIKEKELK--------------SFQEEVKKIQDSLKD----FQSKE 555

Query: 345 EESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLE 404
            E +  ++++ E  KE+ LKK Q ++   +  L              K+K  D+ ++ L+
Sbjct: 556 AELVKLKESLTEHEKELGLKKKQIHVRSEKIEL--------------KDKKLDAREERLD 601

Query: 405 DRLQDLEIKEREFEKRVKEFELREKEFGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYL 464
            + + L+  E++  K VKE+EL  K+  S       C +N   Q      +      + L
Sbjct: 602 KKDEQLKSAEQKLAKCVKEYELNAKKLASF------CQQNNPDQQVDLVRDASVCDEKTL 655

Query: 465 QFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRSC 524
           Q LL  HL+K D +   V   +K++ DPA LVL+ I      H +    + D   +RR  
Sbjct: 656 QLLLRGHLKKCDQLHLDVLRALKASSDPAKLVLNTIQRL---HEKMAVTKLDPDSVRRGS 712

Query: 525 ILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFD 584
           I LLE L  ++PE   +V+ EA+K   EWK    V  EN +EVLGFLH L+A+ LA  FD
Sbjct: 713 ICLLECLMDMSPEPKTEVQVEAIKSVTEWKNTTLVKAENPVEVLGFLHFLSAFSLAYTFD 772

Query: 585 GEELESLLRIVAQHRQTPKLRQTLGFADKEP-----GLQCSTTAEGRSAPSMLVGTSAPT 639
            +++++L       +  P L + LG +   P      L      +   AP +    S  T
Sbjct: 773 ADKVQNLFDAAFLRQYAPSLCEALGVSSLAPVNNVLSLDDKPEQQPPEAPIINSSDSRST 832

Query: 640 NQPD----SSLMNLPQYSGMDPSNSTS-SPVSQFSGAQPQLE 676
           N  +    S L N+     +DP  STS SP   F+G Q  ++
Sbjct: 833 NVQETIASSHLGNVDVL--LDPEGSTSFSPNEVFTGLQGMID 872

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813019|ref|XP_002874393.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320230|gb|EFH50652.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 164/587 (27%), Positives = 269/587 (45%), Gaps = 72/587 (12%)

Query: 98  ELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKE 157
           E+  K+KEL  V  +I E  ++L+  E +L S    L  +  EL S +  ++    +   
Sbjct: 341 EIKRKRKELTAVLDKIAEYGKQLESVEQQLASQQKLLETRSSELVSKKKELDGLSLDLDL 400

Query: 158 LQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDK 217
              L N ++E C +I+ + +++ E++R I+E       +   I S++ L+EE+ E L  K
Sbjct: 401 ANSLNNEMRETCKQIKSKGRELEEIERLIQE-------RSGHIESIKLLLEEHSEELASK 453

Query: 218 ERPYDEVKKSLILCETKLESE--KKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHEN 275
           E  ++E+ +++     KL SE   KE  + Q S K+L                       
Sbjct: 454 EERHNEITEAI----RKLSSEIVSKEETIQQLSEKQLVK--------------------- 488

Query: 276 EVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKE 335
                +++LDS  K+ +    +  +K++EL  +     E  Q+   K+KELK +Q+ IK+
Sbjct: 489 -----QRKLDSTEKRLENTTAEFVIKEKELGSVKDTYRECLQNWEIKEKELKSLQEEIKK 543

Query: 336 CS---KEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEK 392
                K+FQ K+ E +  + ++ E  KE+ LK+ +      +  L              K
Sbjct: 544 IQDSLKDFQSKEAEQVKLKASLMEREKELGLKEKRIRARSEKIEL--------------K 589

Query: 393 EKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKEFGSIRKAVEDCSKNLLLQAKTE 452
           EK  D+ ++ ++ + + L+  E +  K VK++EL  K+  S       C +N   Q    
Sbjct: 590 EKKLDAREERIDKKDEQLKSTELKLAKCVKDYELNAKKLASF------CQQNNPDQQVDL 643

Query: 453 DPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSREGD 512
             +      + LQ LL  HL+K D +   V   +K++ DPA LVL  I G    H R   
Sbjct: 644 VRDASVCDEKTLQLLLRGHLKKCDQLHLDVLGALKASSDPAKLVLDTIQGL---HERMAV 700

Query: 513 LEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLH 572
            + D   +RRS I LLE L  ++ E   +V+ EA+K A EWK    V  EN +EVLGFLH
Sbjct: 701 TKLDPDSVRRSSICLLECLMNMSQEPKTEVQVEAIKSATEWKNTTLVKAENPVEVLGFLH 760

Query: 573 LLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGFADKEPGLQCSTTAE-GRSAPSM 631
            LAA+ LA  FD +++++L       +  P L + LG +   P        +     P  
Sbjct: 761 FLAAFSLAYTFDADKVQNLFDAAFLRQYAPSLCEALGVSSLAPVNNVLLLDDKPEQQPPE 820

Query: 632 LVGTSAPTNQPDSSLMNLPQYSG-----MDPSNSTS-SPVSQFSGAQ 672
            +  S+ +  PD        + G     +DP  S S SP   F+G Q
Sbjct: 821 AIRNSSDSRSPDVQETIASSHLGNEDVLLDPEGSASFSPNEVFTGLQ 867

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	747
TAIR|locus:2181241	1181	AT5G27220 "AT5G27220" [Arabido	0.874	0.552	0.262	1.4e-33
TAIR|locus:2181251	948	AT5G27230 [Arabidopsis thalian	0.176	0.139	0.345	2e-18
TAIR|locus:1005716104	558	AT5G48385 "AT5G48385" [Arabido	0.269	0.360	0.272	1.2e-13
TAIR|locus:2082214	269	AT3G12190 "AT3G12190" [Arabido	0.278	0.773	0.272	4.3e-12
UNIPROTKB|F1NGZ3	2417	F1NGZ3 "Uncharacterized protei	0.455	0.140	0.213	7.2e-11
TAIR|locus:2171327	470	FRL1 "FRIGIDA like 1" [Arabido	0.322	0.512	0.285	1.4e-10
TAIR|locus:2826175	473	FRL2 "AT1G31814" [Arabidopsis	0.198	0.312	0.278	5.7e-10
UNIPROTKB|G3MX17	1712	G3MX17 "Uncharacterized protei	0.602	0.262	0.210	4.2e-09
UNIPROTKB|G3MYT9	1752	G3MYT9 "Uncharacterized protei	0.602	0.256	0.210	4.3e-09
TAIR|locus:2010826	1345	AT1G65010 [Arabidopsis thalian	0.522	0.289	0.199	6.6e-09

TAIR|locus:2181241 AT5G27220 "AT5G27220" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 1.4e-33, P = 1.4e-33
 Identities = 188/717 (26%), Positives = 306/717 (42%)

Query:     2 DNCTVNISEEL-RVAESKKEALRRSFDI-ARSQSNSVPVFTGQWD-DLEE-HLDLTKKSL 57
             DN    + EE+ R  +     + +  D   R ++ S+ +   Q + +L+E  LD  K  L
Sbjct:   178 DNGRRELEEEIERKTKDLTLVMNKIVDCDKRIETRSLELIKTQGEVELKEKQLDQMKIDL 237

Query:    58 EKQSNDVDVKIRLLDQ----RAK---EIESKEIELVLVGKKIEDCNG-------ELACKK 103
             EK   DV+ + + L +    R K   EIE K  +L LV  KI +C         EL   +
Sbjct:   238 EKYCVDVNAEKKNLGRTQTHRRKLEEEIERKTKDLTLVMDKIAECEKLFERRSLELIKTQ 297

Query:   104 KELGLVQKRIGECKRELQXXXXXXXXXXXXXXXXXXXXCSVQGWINKCQANQKELQLLKN 163
              E+ L  K++ +   +L+                      +   I +    +KEL  + +
Sbjct:   298 GEVELKGKQLEQMDIDLERHRGEVNVVMEHLEKSQTRSRELAEEIER---KRKELTAVLD 354

Query:   164 LIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRT---LIEEYEEVLKDKERP 220
                E    IEL E+++   Q+ ++    +L  K+ ++  +     L+      LK+  + 
Sbjct:   355 KTAEYGKTIELVEEELALQQKLLDIRSSELVSKKKELDGLSLDLELVNSLNNELKETVQR 414

Query:   221 YDEVKKSLILCXXXXXXXXXXXXXXXXXIKELWMKFHSEQEKLELLQGRVRLHENEVESL 280
              +   K L                    IK L ++ HSE+  L + + R       V  L
Sbjct:   415 IESKGKEL----EDMERLIQERSGHNESIK-LLLEEHSEE--LAIKEERHNEIAEAVRKL 467

Query:   281 EQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEF 340
               E+ S  K  ++  +    K+ +L+   K +EE   +  SK+ EL  V+ + +EC + +
Sbjct:   468 SLEIVSKEKTIQQLSEKQHSKQTKLDSTEKCLEETTAELVSKENELCSVKDTYRECLQNW 527

Query:   341 QWKKEE--SISTE-KTIAEC-----SKEVELKKNQFNLTQHESNL-FQTRTIGYLKELKE 391
             + K++E  S   E K I +      SKE EL K + +LT+HE  L  + + I    E  E
Sbjct:   528 EIKEKELKSFQEEVKKIQDSLKDFQSKEAELVKLKESLTEHEKELGLKKKQIHVRSEKIE 587

Query:   392 -KEKHFDSLKKGLEDRLQDLXXXXXXXXXXXXXXXXXXXXXGSI-RKAVEDCSKNLLLQA 449
              K+K  D+ ++ L+ + + L                      S  ++   D   +L+  A
Sbjct:   588 LKDKKLDAREERLDKKDEQLKSAEQKLAKCVKEYELNAKKLASFCQQNNPDQQVDLVRDA 647

Query:   450 KTEDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSR 509
                D EK       LQ LL  HL+K D +   V   +K++ DPA LVL+ I      H +
Sbjct:   648 SVCD-EKT------LQLLLRGHLKKCDQLHLDVLRALKASSDPAKLVLNTIQRL---HEK 697

Query:   510 EGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLG 569
                 + D   +RR  I LLE L  ++PE   +V+ EA+K   EWK    V  EN +EVLG
Sbjct:   698 MAVTKLDPDSVRRGSICLLECLMDMSPEPKTEVQVEAIKSVTEWKNTTLVKAENPVEVLG 757

Query:   570 FLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGFADKEP-----GLQCSTTAE 624
             FLH L+A+ LA  FD +++++L       +  P L + LG +   P      L      +
Sbjct:   758 FLHFLSAFSLAYTFDADKVQNLFDAAFLRQYAPSLCEALGVSSLAPVNNVLSLDDKPEQQ 817

Query:   625 GRSAPSMLVGTSAPTNQPD----SSLMNLPQYSGMDPSNSTS-SPVSQFSGAQPQLE 676
                AP +    S  TN  +    S L N+     +DP  STS SP   F+G Q  ++
Sbjct:   818 PPEAPIINSSDSRSTNVQETIASSHLGNVDVL--LDPEGSTSFSPNEVFTGLQGMID 872

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2181251 AT5G27230 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
 Identities = 46/133 (34%), Positives = 65/133 (48%)

Query:   484 DTIKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVR 543
             + +K   DPA L L       P ++ EG  EF + I   SC LLL QL  + P+I   V+
Sbjct:   570 NALKCTPDPAKLFLDTSMALCPTNT-EGGYEFKMLITSASCSLLLNQLKKLLPKIGHPVK 628

Query:   544 DEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPK 603
              +A K+A  WK K+  +  + LEV+ FL  L  + +   F  ++L  LL        +P 
Sbjct:   629 GDAKKLAVYWKDKIAKSKRDQLEVICFLQFLGIFGIVSEFKADDLLGLLDNSYWQTVSPD 688

Query:   604 LRQTLGFADKEPG 616
             L Q LG  D  PG
Sbjct:   689 LCQFLGLDDAIPG 701

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716104 AT5G48385 "AT5G48385" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 60/220 (27%), Positives = 107/220 (48%)

Query:   487 KSARDPALLVLHAISGFYPPHSREGDLEFDVSII--RRSCILLLEQLSTV---------A 535
             ++A +PA LVL ++ GFYP  +   D + D +++  RR+CI+L+E LS +         A
Sbjct:   210 RAAANPASLVLDSLEGFYPMEAPTADGKKDANLLGMRRTCIMLMECLSILLSGLDRNCLA 269

Query:   536 PEINAQVRDEAMKVAGEWKK-----KMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELES 590
               ++  V+  A  +A  W        M     NSLE   FL LLA + +   F  +EL  
Sbjct:   270 VVLSQNVKHRAKTIAEGWNPLLESLDMDACNGNSLEAHAFLQLLATFAIVADFKEDELLK 329

Query:   591 LLRIVAQHRQTPKLRQTLGFADKEPGLQCSTTAEGRSAPSMLVGTSAPTNQPDSSLMNLP 650
             L+ +V++ RQ  +L ++LG A+K PG+       G+   ++ +  +    +  S +  L 
Sbjct:   330 LIPMVSRRRQAAELCRSLGLAEKMPGVIEVLVNSGKQIDAVNLAFAFELTEQFSPVSLLK 389

Query:   651 QYSGMDPSNSTSSPVSQFSGAQPQLENQYKRLRVESLSTI 690
              Y  ++   S  SP  +   A P +++++    +  L T+
Sbjct:   390 SYL-IEARRS--SPQGRPGNASPAVQDEFNERELIGLKTV 426

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082214 AT3G12190 "AT3G12190" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 4.3e-12, P = 4.3e-12
 Identities = 63/231 (27%), Positives = 115/231 (49%)

Query:    10 EELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIR 69
             ++LRVA+ KKE LRRS   A S+++ V  FT  W DLE H D  +  L K+S +++ K +
Sbjct:     4 KKLRVAKWKKERLRRSLMKAESKASDVLSFTLSWRDLESHFDSIESDLVKRSQEIESKEK 63

Query:    70 LLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQXXXXXXXX 129
              L++R+ E+ESK   L    ++I   +G     +++    Q+++   KRE++        
Sbjct:    64 HLEKRSHELESKGKILEKRAREINTADGF----RRDFEEKQRKLDRLKREIESEEKKRFL 119

Query:   130 XXXXXXXXXXXXCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEV--QRSIE 187
                            +  +   Q N  +L +  +  KE  +E+ ++++K  E+  ++ +E
Sbjct:   120 VQKLNRERKFELKRTREQVEALQKNDMKLDVKHS--KEMSEELLVQQEKYEEILKKKKLE 177

Query:   188 EHE-----KQLAFKESKIS--SMRTLIEEYEEVLKDKERPYDEVKKSLILC 231
             E +     + LA +E  +   SMR + +  EE+  +K       KK+L+LC
Sbjct:   178 EKKLKDCTRDLALREGDLRWVSMR-MTKRCEELRWEK-------KKNLVLC 220

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NGZ3 F1NGZ3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 193 (73.0 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 79/370 (21%), Positives = 171/370 (46%)

Query:    46 LEEHLDLTKKSLEKQSNDVDV---KIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACK 102
             LE+ L  T   L+ ++ +VD    KI++L + A ++++ +  L+ V   +    GE+   
Sbjct:  1340 LEQELQTTLSVLKTKNKEVDAQWEKIQMLQKEAADVKALQENLIQVNAILSKREGEMKLY 1399

Query:   103 KKELGLVQKRIGECKRELQXXXXXXXXXXXXXXXXXXXXCSVQGWINKCQANQKELQLLK 162
             ++++     R+ E ++E+                      S Q  I + +  Q+ELQ  +
Sbjct:  1400 QEQM-----RMLENQKEMHKTTLDQVIKDIKEKKEKTE--SQQEQIQELE-KQQELQ--R 1449

Query:   163 NLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYD 222
              +I +   ++E R+K++   Q  I E EKQ   + + +S M   +   ++ ++ ++    
Sbjct:  1450 TVISKMSKDLEDRDKEIRSQQEEIWELEKQQELQRTVVSKMTKDLAHRDQEIQSQQEEIQ 1509

Query:   223 EVKKSLILCXXXXXXXXXXXXXXXXXIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQ 282
             E++K   L                  +KE   K  S+QE +E L+ +  L    +  + +
Sbjct:  1510 ELEKEREL-------QRTAASKMSKDLKERDEKIRSQQELIEELEKQQELQRTALSKMSK 1562

Query:   283 ELDSMRKQQKKYFDDV--ELKKR-ELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKE 339
              L+  R Q+ K   ++  ELKK+ EL      + ++N+D   +D+E++  Q+ I+E  K+
Sbjct:  1563 NLEE-RDQEIKSQQELIEELKKQQELQRTA--VSKMNKDLEERDQEIRSQQEEIQELEKQ 1619

Query:   340 FQWKKEESISTEKTIAECSKEVELKKNQFN-LTQHESNLFQTRTIG--YLK-ELKEKEKH 395
              + ++       K + E  + ++ ++ +   L QH ++  ++  +   ++K  LKEK   
Sbjct:  1620 RELQRTILSKMSKDLEEKDQVIKFQEGKVMILEQHGTSQVRSLLVDLDHMKGNLKEKNLE 1679

Query:   396 FDSLKKGLED 405
               SL + +++
Sbjct:  1680 LMSLNQQIKE 1689

GO:0000278 "mitotic cell cycle" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0010457 "centriole-centriole cohesion" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030997 "regulation of centriole-centriole cohesion" evidence=IEA

GO:0031616 "spindle pole centrosome" evidence=IEA

TAIR|locus:2171327 FRL1 "FRIGIDA like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 74/259 (28%), Positives = 113/259 (43%)

Query:   359 KEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLXXXXXXXX 418
             K+ +LKK   +L  H S L  + ++ +     E + HF SL+  L  R + L        
Sbjct:    17 KKEKLKKAFDDLQAHRSLLSPSFSLSW----SEIDSHFSSLQSSLASRFRLLHSTSPLEH 72

Query:   419 XXXXXXXXXXXXXGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQKHDSI 478
                           S  +  E       L+A  E   K+   G  +++L+ +       +
Sbjct:    73 DSYRIDASDAGKSSSSEEVSEQPVVEPELRALCE---KIDGIG-LIKYLI-RIWDDETPL 127

Query:   479 FCKVFDTIKSARDPALLVLHAISGF-YPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPE 537
               +V   I+ + D A +VL AI G  Y P S  G   FDV   RR  +LL+E L  +   
Sbjct:   128 NQEVSAAIRYSPDTASMVLDAIEGSNYTPSS-SGR-SFDV---RRVFVLLMEVLIEINAN 182

Query:   538 INAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIVAQ 597
             I    R+ A K+A  WK K+ V      E L FLHL+AA+ L   FD EEL   + ++A+
Sbjct:   183 ITVDTRNRAKKLAYHWKSKVGV---KPFEALVFLHLVAAFELGSEFDTEELSDYVFMIAK 239

Query:   598 HRQTPKLRQTLGFADKEPG 616
             ++Q   +   +G   K  G
Sbjct:   240 YKQATLVCNKIGVDRKRVG 258

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2826175 FRL2 "AT1G31814" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
 Identities = 42/151 (27%), Positives = 77/151 (50%)

Query:   459 SSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSREGDLEFDVS 518
             + G+ L   + ++ +K  SI  ++ + I+ + +PA LVL AI G Y   S          
Sbjct:    97 NDGKGLGNYMIENSRKRLSINEELPNAIRCSENPAPLVLDAIEGSYHCSSPSSSSSARAI 156

Query:   519 IIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYR 578
              ++R  +LLLE L  +   +   +R+ A  +A +WK  +        E LGFLHL+AA+ 
Sbjct:   157 DVKRIFVLLLEALIEINANLTNDLRERARTIAYDWKPNIG---NKPSEALGFLHLVAAFE 213

Query:   579 LAPAFDGEELESLLRIVAQHRQTPKLRQTLG 609
             L   F  EE+   + ++++++Q   + + +G
Sbjct:   214 LGSLFSTEEICDYIFLISKYKQATTICKKIG 244

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

UNIPROTKB|G3MX17 G3MX17 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 109/518 (21%), Positives = 219/518 (42%)

Query:    44 DDLEEHLDLTKKSLEKQSND--VDVKIRLLDQRAKEIESKEIEL-VLVGKKIEDCNGELA 100
             D   E+  L  +  EK++ D  +  K  L+ Q  +E++ K I L + V   +E+   ++ 
Sbjct:   996 DYTNENNRLKIEEREKKNQDDLLKEKDSLIQQLKEEVQEKTISLDIEVQHVVEELTQDVT 1055

Query:   101 CKK---KEL-GLVQKRIGECKRELQXXXXXXXXXXXXXXXXXXXXCSVQGWINKCQANQK 156
             C K   KEL  +++ +  EC    +                          +N+CQAN K
Sbjct:  1056 CYKVKIKELEAMLETKKDECSHSAKLEQEIMEKESIILKQERN--------LNECQANLK 1107

Query:   157 E-LQLLKNLIKECCDEIELRE------KKVGEVQRSIE--EHEKQLAFKESK-----ISS 202
             + +Q  ++L +    E++L+E      K + + + S++  E EK+  ++E++     +S+
Sbjct:  1108 DSIQNARDLSER---EVKLKEEIMQLTKNLQDAKHSLQLKEEEKERNWQETEKLKEELSA 1164

Query:   203 MRTLIEEYEEVLKDKERPYDEVKKSLILCXXXXXXXXXXXXXXXXXIKELWMKFHSEQEK 262
               TL +  +  L+ KE  Y E+K+ L                     K L +K +  ++K
Sbjct:  1165 STTLTQNLKADLQRKEEDYAELKEKLADAKKQIEQVQKEISVMRDEEKLLRIKINELEKK 1224

Query:   263 LELLQGRVRLHENEVESLEQELDSMRKQQKKYFD----DVELKKRELNEIGKYIEELNQD 318
                    + + +  ++ L+++L++ + ++   ++    D+ +K++ + ++   +EE  Q 
Sbjct:  1225 KNQCSQEIDMKQRTIQQLKEQLNNQKVEEAIQYERVCKDLSVKEKIIKDMQMTLEEQEQT 1284

Query:   319 PASKDKELKFVQQSIKECSKEFQ-WKKEESISTEKTIAECSKEVELKKNQFNLTQHESN- 376
                +D+ L+   +  +  + E + WK       EK      K++E K NQ +  + E N 
Sbjct:  1285 QVEQDQVLEAKLEETERLATELEEWK-------EKY-----KDLEAKHNQSSNKEFEDNT 1332

Query:   377 -LFQTRTIGYLKELKEKE-KHFDSLKKGLEDRLQDLXXXXXXXXXXXXXXXXXXXXXGSI 434
              +  T+      EL+E E KH    KK LE+++  +                        
Sbjct:  1333 DVLNTKLSKLQDELQESEQKHEAERKKWLEEKMMLITQAKEAENLRNKEMKKYAEDREHC 1392

Query:   435 RKAVEDCS--KNLL------LQAKTEDPEKLTSSGRY-LQFLLNQHLQKHDSIFCKVFDT 485
              K   +    K  L      LQ   E+ ++L ++    L+ L++ ++QK + I     + 
Sbjct:  1393 LKQQNEMEILKGQLAEKDGNLQQWREERDQLVAALEIQLKALISSNVQKDNEI-----EQ 1447

Query:   486 IKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRS 523
             +K +    LL      G YPPH+ E +  + V I  +S
Sbjct:  1448 LKRSHQ-RLLRQKTDHG-YPPHTNEFNRSWQVEIAPQS 1483

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|G3MYT9 G3MYT9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 109/518 (21%), Positives = 219/518 (42%)

Query:    44 DDLEEHLDLTKKSLEKQSND--VDVKIRLLDQRAKEIESKEIEL-VLVGKKIEDCNGELA 100
             D   E+  L  +  EK++ D  +  K  L+ Q  +E++ K I L + V   +E+   ++ 
Sbjct:  1036 DYTNENNRLKIEEREKKNQDDLLKEKDSLIQQLKEEVQEKTISLDIEVQHVVEELTQDVT 1095

Query:   101 CKK---KEL-GLVQKRIGECKRELQXXXXXXXXXXXXXXXXXXXXCSVQGWINKCQANQK 156
             C K   KEL  +++ +  EC    +                          +N+CQAN K
Sbjct:  1096 CYKVKIKELEAMLETKKDECSHSAKLEQEIMEKESIILKQERN--------LNECQANLK 1147

Query:   157 E-LQLLKNLIKECCDEIELRE------KKVGEVQRSIE--EHEKQLAFKESK-----ISS 202
             + +Q  ++L +    E++L+E      K + + + S++  E EK+  ++E++     +S+
Sbjct:  1148 DSIQNARDLSER---EVKLKEEIMQLTKNLQDAKHSLQLKEEEKERNWQETEKLKEELSA 1204

Query:   203 MRTLIEEYEEVLKDKERPYDEVKKSLILCXXXXXXXXXXXXXXXXXIKELWMKFHSEQEK 262
               TL +  +  L+ KE  Y E+K+ L                     K L +K +  ++K
Sbjct:  1205 STTLTQNLKADLQRKEEDYAELKEKLADAKKQIEQVQKEISVMRDEEKLLRIKINELEKK 1264

Query:   263 LELLQGRVRLHENEVESLEQELDSMRKQQKKYFD----DVELKKRELNEIGKYIEELNQD 318
                    + + +  ++ L+++L++ + ++   ++    D+ +K++ + ++   +EE  Q 
Sbjct:  1265 KNQCSQEIDMKQRTIQQLKEQLNNQKVEEAIQYERVCKDLSVKEKIIKDMQMTLEEQEQT 1324

Query:   319 PASKDKELKFVQQSIKECSKEFQ-WKKEESISTEKTIAECSKEVELKKNQFNLTQHESN- 376
                +D+ L+   +  +  + E + WK       EK      K++E K NQ +  + E N 
Sbjct:  1325 QVEQDQVLEAKLEETERLATELEEWK-------EKY-----KDLEAKHNQSSNKEFEDNT 1372

Query:   377 -LFQTRTIGYLKELKEKE-KHFDSLKKGLEDRLQDLXXXXXXXXXXXXXXXXXXXXXGSI 434
              +  T+      EL+E E KH    KK LE+++  +                        
Sbjct:  1373 DVLNTKLSKLQDELQESEQKHEAERKKWLEEKMMLITQAKEAENLRNKEMKKYAEDREHC 1432

Query:   435 RKAVEDCS--KNLL------LQAKTEDPEKLTSSGRY-LQFLLNQHLQKHDSIFCKVFDT 485
              K   +    K  L      LQ   E+ ++L ++    L+ L++ ++QK + I     + 
Sbjct:  1433 LKQQNEMEILKGQLAEKDGNLQQWREERDQLVAALEIQLKALISSNVQKDNEI-----EQ 1487

Query:   486 IKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRS 523
             +K +    LL      G YPPH+ E +  + V I  +S
Sbjct:  1488 LKRSHQ-RLLRQKTDHG-YPPHTNEFNRSWQVEIAPQS 1523

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

TAIR|locus:2010826 AT1G65010 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 6.6e-09, P = 6.6e-09
 Identities = 84/422 (19%), Positives = 176/422 (41%)

Query:     1 MDNCTVNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQ 60
             ++N   +I  EL +++ +K    R+ D  ++ ++++     Q  +L   L+  K   EK 
Sbjct:   396 LENLVESIKSELEISQEEKT---RALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKS 452

Query:    61 SNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKK---KELG-LVQKRIGEC 116
               D++     L + + E    +  L++  +++++C  ++   K   KE     +K + + 
Sbjct:   453 KKDMESLTLALQEASTESSEAKATLLVCQEELKNCESQVDSLKLASKETNEKYEKMLEDA 512

Query:   117 KRELQXXXXXXXXXXXXXXXXXXX----XCSVQGWINKCQ----ANQKELQLLKNLIKEC 168
             + E+                           + G + K +    ++Q+E+  L NL+KE 
Sbjct:   513 RNEIDSLKSTVDSIQNEFENSKAGWEQKELHLMGCVKKSEEENSSSQEEVSRLVNLLKES 572

Query:   169 CDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSL 228
              ++   R+++   ++ +++  E ++ + +  +   +    + +E L DKE     V    
Sbjct:   573 EEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAE- 631

Query:   229 ILCXXXXXXXXXXXXXXXXXIKELWM----KFHSEQEKLELLQGRVRLHENEVESLEQE- 283
             I                   +KE  +    K  S  ++ E L+GR   H  ++E L    
Sbjct:   632 ISSLREWEGSVLEKIEELSKVKESLVDKETKLQSITQEAEELKGREAAHMKQIEELSTAN 691

Query:   284 ---LDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEF 340
                +D   K Q    +  +LK++E   + K IEEL+    S    +  +Q  ++E SK+ 
Sbjct:   692 ASLVDEATKLQSIVQESEDLKEKEAGYLKK-IEELSVANESLADNVTDLQSIVQE-SKDL 749

Query:   341 QWKKEESISTEKTIAECSKEVELKKNQFNLTQH---ESNLFQTRTIGYLKELKEKEKHFD 397
                KE  ++  K I E S   E   ++    QH   E+   + R   +LK+++E  K  +
Sbjct:   750 ---KEREVAYLKKIEELSVANESLVDKETKLQHIDQEAEELRGREASHLKKIEELSKENE 806

Query:   398 SL 399
             +L
Sbjct:   807 NL 808

GO:0005634 "nucleus" evidence=ISM

GO:0009908 "flower development" evidence=IMP

GO:0007020 "microtubule nucleation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_70000144 hypothetical protein (1006 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	747
pfam07899	293	pfam07899, Frigida, Frigida-like protein	2e-39
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-15
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-14
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-12
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-11
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-10
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-09
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-09
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-09
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-08
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-06
pfam01496	707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	7e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
cd08915	342	cd08915, V_Alix_like, Protein-interacting V-domain	7e-05
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	1e-04
TIGR00606	1311	TIGR00606, rad50, rad50	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	3e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	6e-04
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	6e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.003
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.003
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.003
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.004
PHA02562	562	PHA02562, 46, endonuclease subunit; Provisional	0.004
pfam13166	713	pfam13166, AAA_13, AAA domain	0.004

>gnl|CDD|219629 pfam07899, Frigida, Frigida-like protein

 Score =  147 bits (372), Expect = 2e-39
 Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 5/161 (3%)

Query: 461 GRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSREGDLEFDVSII 520
            R L   + ++ ++  S+  +V   ++ A DPA LVL AI GFYPP S+ G  E  +  +
Sbjct: 24  SRGLLKFVIENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPDSKGGK-EDKMVDV 82

Query: 521 RRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKM----RVAVENSLEVLGFLHLLAA 576
           RRSC+LLLEQL  V P I+  V++EA K+A EWK K+     V    SLE LGFL LLAA
Sbjct: 83  RRSCVLLLEQLVRVNPPISPDVKEEAKKLAVEWKAKLEEDGGVENGKSLEALGFLQLLAA 142

Query: 577 YRLAPAFDGEELESLLRIVAQHRQTPKLRQTLGFADKEPGL 617
           + L   FD +EL  L  +V++ +Q P+L ++LG ADK P L
Sbjct: 143 FGLVSEFDQDELLKLFVMVSRRKQAPELCRSLGLADKMPDL 183

This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana. This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time. Length = 293

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 79.0 bits (195), Expect = 5e-15
 Identities = 78/324 (24%), Positives = 165/324 (50%), Gaps = 26/324 (8%)

Query: 44  DDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKK 103
           +DL E L+   + LE+Q+   +    L  +       +E+EL L+  K+++   EL   +
Sbjct: 192 EDLLEELEKQLEKLERQAEKAERYQELKAEL------RELELALLLAKLKELRKELEELE 245

Query: 104 KELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKN 163
           +EL  +++ + E + EL+  E E+  L   L   +EEL          +  Q+EL  LK 
Sbjct: 246 EELSRLEEELEELQEELEEAEKEIEELKSELEELREEL----------EELQEELLELKE 295

Query: 164 LIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDE 223
            I+E   EI L  +++ E++  +EE E++L   + KI +++  +EE E +L++ E+   E
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355

Query: 224 VKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQE 283
           ++++    E KL +  +ELE    +++E   +  +E  ++           NE+E L++E
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR----------NELEELKRE 405

Query: 284 LDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWK 343
           ++S+ ++ ++  + +E  K EL E+   +EEL  +    ++EL+ +++ ++E     +  
Sbjct: 406 IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKEL 465

Query: 344 KEESISTEKTIAECSKEVELKKNQ 367
           + E    ++ +    KE+   + +
Sbjct: 466 ERELAELQEELQRLEKELSSLEAR 489

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 76.3 bits (188), Expect = 4e-14
 Identities = 71/372 (19%), Positives = 181/372 (48%), Gaps = 13/372 (3%)

Query: 73   QRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSG 132
            +  +   +++ EL  + +++ +   +L   ++EL  ++  +   +  L+    +L  L  
Sbjct: 657  RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716

Query: 133  SLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQ 192
             L   K EL +++  + + Q     L+ L+  ++E  +E+E  ++++ E++  +E  E+ 
Sbjct: 717  QLEELKRELAALEEELEQLQ---SRLEELEEELEELEEELEELQERLEELEEELESLEEA 773

Query: 193  LAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKEL 252
            LA  + +I  +    +  +E L++ E   +E ++ L   E +LES ++  E  +  I+EL
Sbjct: 774  LAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEEL 833

Query: 253  WMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYI 312
              +    +EKL+ L+  +   E E+E L++EL+ +  ++++  D+++  + E  E+ + +
Sbjct: 834  EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893

Query: 313  EELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQ 372
             EL  + A   +E++ +++ ++E   + +  + E    E+ + E  ++    + +  + +
Sbjct: 894  RELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIER 953

Query: 373  HESNLFQTRTI--GYLKELKEKEKHFDSLKKGLEDRLQDL--------EIKEREFEKRVK 422
             E  +     +    ++E +E E+ ++ LK   ED  +          E+ + + E+  +
Sbjct: 954  LEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKE 1013

Query: 423  EFELREKEFGSI 434
             F+   + F  I
Sbjct: 1014 TFDKINENFSEI 1025

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 70.9 bits (174), Expect = 2e-12
 Identities = 78/287 (27%), Positives = 148/287 (51%), Gaps = 11/287 (3%)

Query: 45  DLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKK 104
           +LEE L   +  LEK   ++      L      +E    +L  + +++E+   ELA  ++
Sbjct: 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEE 730

Query: 105 ELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKEL----QL 160
           EL  +Q R+ E + EL+  E EL  L   L   +EEL S++  + K +   +EL    Q 
Sbjct: 731 ELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQA 790

Query: 161 LKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERP 220
           L+  ++E  +E+E  E+++  ++R +E  E++    E +I  +   IEE EE L + E  
Sbjct: 791 LQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEE 850

Query: 221 YDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESL 280
            +E++K L   + +LE  + E E  +  +KEL       +E+ E L+  +R  E+E+  L
Sbjct: 851 LEELEKELEELKEELEELEAEKEELEDELKEL-------EEEKEELEEELRELESELAEL 903

Query: 281 EQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELK 327
           ++E++ +R++ ++    +E  + EL E+ + +EE  +D    + E +
Sbjct: 904 KEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE 950

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 70.5 bits (173), Expect = 2e-12
 Identities = 65/273 (23%), Positives = 136/273 (49%), Gaps = 10/273 (3%)

Query: 173 ELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCE 232
           ELRE ++  +   ++E  K+L   E ++S +   +EE +E L++ E+  +E+K  L    
Sbjct: 221 ELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELR 280

Query: 233 TKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQK 292
            +LE  ++EL   +  I+EL  +    +E+LE L+  +   E  +E L++++++++++ +
Sbjct: 281 EELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELE 340

Query: 293 KYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEK 352
           +    +E  ++ L E+ +  EEL +  ++  +EL+          + F+  +EE    E 
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELE----------ELFEALREELAELEA 390

Query: 353 TIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEI 412
            +AE   E+E  K +    +        R     +ELKE E   + L+  LE+  ++LE 
Sbjct: 391 ELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEE 450

Query: 413 KEREFEKRVKEFELREKEFGSIRKAVEDCSKNL 445
            E + E+     +  E+E   +++ ++   K L
Sbjct: 451 LEEQLEELRDRLKELERELAELQEELQRLEKEL 483

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 66.2 bits (162), Expect = 4e-11
 Identities = 100/454 (22%), Positives = 199/454 (43%), Gaps = 62/454 (13%)

Query: 7   NISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDV 66
            I + L   E +   +         +   +     +  +LE+ L+  ++  E        
Sbjct: 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHEL------- 363

Query: 67  KIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENE 126
                + +AK+ E + ++  L G   E    EL    +EL   ++ I E   ++  +  E
Sbjct: 364 ---YEEAKAKKEELERLKKRLTGLTPEKLEKEL----EELEKAKEEIEEEISKITARIGE 416

Query: 127 LNSLSGSLNLKKEELCSVQGWINKCQANQKEL--QLLKNLIKECCDEIELREKKVGEVQR 184
           L      L    EEL   +G   KC    +EL  +  K L++E   E++  EK++ E++ 
Sbjct: 417 LKKEIKELKKAIEELKKAKG---KCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEE 473

Query: 185 SIEEHEKQLA------FKESKISSMRTLIEEYEEV-----------LKDKERPYDEVKKS 227
              +  K+L        KES++  ++ L E+ +E+           L+ K   Y+++K+ 
Sbjct: 474 KERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEK 533

Query: 228 LILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSM 287
           LI  + +++S KKELE                  KLE L+ ++   E +++ LE+EL  +
Sbjct: 534 LIKLKGEIKSLKKELE------------------KLEELKKKLAELEKKLDELEEELAEL 575

Query: 288 RKQ-QKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEE 346
            K+ ++  F+ VE  +  L E+  +  E  +   ++ KEL+  ++ +K+  +E     EE
Sbjct: 576 LKELEELGFESVEELEERLKELEPFYNEYLELKDAE-KELEREEKELKKLEEELDKAFEE 634

Query: 347 SISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDR 406
              TEK + E  KE+E  + +++  ++E             EL  +     +  + LE R
Sbjct: 635 LAETEKRLEELRKELEELEKKYSEEEYE------ELREEYLELSRELAGLRAELEELEKR 688

Query: 407 LQDLEIKEREFEKRVKEFELREKEFGSIRKAVED 440
            ++++    + ++ ++E E  +KE   + KA+E 
Sbjct: 689 REEIKKTLEKLKEELEEREKAKKELEKLEKALER 722

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 64.7 bits (158), Expect = 1e-10
 Identities = 77/328 (23%), Positives = 155/328 (47%), Gaps = 23/328 (7%)

Query: 109 VQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKEC 168
           +++ I E ++EL+    E+N +S  L   +EEL        K +   KEL+ LK  I+E 
Sbjct: 191 IEELIKEKEKELEEVLREINEISSELPELREEL-------EKLEKEVKELEELKEEIEEL 243

Query: 169 CDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSL 228
             E+E  E    +++  I E E+++   + +I  +   ++E +E LK+K   Y ++ +  
Sbjct: 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE-LKEKAEEYIKLSEFY 302

Query: 229 ILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMR 288
                +   E +E+E   S ++E         ++LE  + R+   + +++ LE+ L+ + 
Sbjct: 303 ----EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE 358

Query: 289 KQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESI 348
           ++ + Y ++ + KK EL  + K +  L   P   +KEL+ ++++ +E  +E         
Sbjct: 359 ERHELY-EEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAKEEIEEEISKITARIG 415

Query: 349 STEKTIAECSKEV-ELKKNQFN-------LTQHESNLFQTRTIGYLKELKEKEKHFDSLK 400
             +K I E  K + ELKK +         LT+             LK ++++ K  +  +
Sbjct: 416 ELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKE 475

Query: 401 KGLEDRLQDLEIKEREFEKRVKEFELRE 428
           + L   L++LE   ++  + +K  EL E
Sbjct: 476 RKLRKELRELEKVLKKESELIKLKELAE 503

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 65.1 bits (159), Expect = 1e-10
 Identities = 73/355 (20%), Positives = 158/355 (44%), Gaps = 21/355 (5%)

Query: 71   LDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSL 130
            L +  + +E  + EL            EL   +  L  + + + +  R++   E E+  L
Sbjct: 676  LQRLRERLEGLKREL-------SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728

Query: 131  SGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHE 190
                   KE L  ++  ++  +   +E++ +K+ +KE    IE  E+ + +++ ++ + E
Sbjct: 729  EQEEEKLKERLEELEEDLSSLE---QEIENVKSELKELEARIEELEEDLHKLEEALNDLE 785

Query: 191  KQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIK 250
             +L+   S+I  ++  + + EE +   E    E+++ L     + E  +KE++  Q    
Sbjct: 786  ARLS--HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI 843

Query: 251  ELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGK 310
            +L  +  S ++++E L G+    E E+E LE  L  +  +      + +  + +L E+ +
Sbjct: 844  DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903

Query: 311  YIEELN---QDPASKDKELKFVQQSIKECSKEFQ--WKKEESISTEKTIAECSKEVELKK 365
             IEEL    +    +  ELK   ++++E   E +    ++E I  E+   E  +    + 
Sbjct: 904  KIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRV 963

Query: 366  NQFNLTQHESNLFQ----TRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKERE 416
             +        N+         +  L ELKEK    +  +K + +R+++ E K+RE
Sbjct: 964  EEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.4 bits (157), Expect = 2e-10
 Identities = 57/271 (21%), Positives = 129/271 (47%), Gaps = 22/271 (8%)

Query: 42  QWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELAC 101
           +  +L + L+  ++ L +   +++     L++  KEIE  + EL  + +++E+   EL  
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292

Query: 102 KKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQ-- 159
            K+E+  ++  I   +  L+  ENEL  L   L   KE++ +++  + + +   +EL+  
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352

Query: 160 --------------------LLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESK 199
                                L+ L +   +E+   E ++ E++  +EE ++++   E +
Sbjct: 353 LAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEER 412

Query: 200 ISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSE 259
           +  +   +E+ +E LK+ E   +E++  L     +LE  +++LE  +  +KEL  +    
Sbjct: 413 LERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAEL 472

Query: 260 QEKLELLQGRVRLHENEVESLEQELDSMRKQ 290
           QE+L+ L+  +   E  ++ LE E  + +  
Sbjct: 473 QEELQRLEKELSSLEARLDRLEAEQRASQGV 503

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.9 bits (156), Expect = 3e-10
 Identities = 91/399 (22%), Positives = 169/399 (42%), Gaps = 71/399 (17%)

Query: 16  ESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRA 75
           E +KE  R+   + R++ N   +     +D+   L+   KSLE+Q+   +   R  + +A
Sbjct: 172 ERRKETERK---LERTRENLDRL-----EDILNELERQLKSLERQA---EKAERYKELKA 220

Query: 76  KEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKE---NELNSLSG 132
           +    +E+EL L+  ++E+   EL   ++EL   ++ + E   ELQ  E    EL     
Sbjct: 221 EL---RELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS 277

Query: 133 SLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQ 192
            L  + EEL             QKEL  L N I     + ++  +++  ++R +EE E Q
Sbjct: 278 ELEEEIEEL-------------QKELYALANEISRLEQQKQILRERLANLERQLEELEAQ 324

Query: 193 LAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKEL 252
           L   ESK+       +E  E L + E   +E+K+ L   E +LE  + ELE  +S ++EL
Sbjct: 325 LEELESKL-------DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL 377

Query: 253 WMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYI 312
                  +E+LE L+ +V         LE ++ S+  + ++    +E  +     + + I
Sbjct: 378 -------EEQLETLRSKVAQ-------LELQIASLNNEIERLEARLERLEDRRERLQQEI 423

Query: 313 EELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQ 372
           EEL +     +          KE   E +  +EE    ++ +    + +E  + +    +
Sbjct: 424 EELLKKLEEAEL---------KELQAELEELEEELEELQEELERLEEALEELREELEEAE 474

Query: 373 HESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLE 411
                        L   + +     +    LE   ++LE
Sbjct: 475 QA-----------LDAAERELAQLQARLDSLERLQENLE 502

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 62.8 bits (153), Expect = 6e-10
 Identities = 52/278 (18%), Positives = 122/278 (43%), Gaps = 16/278 (5%)

Query: 214 LKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLH 273
           L++     +E+++ L   E +LE    EL+  +  ++EL ++    +E++E LQ  +   
Sbjct: 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293

Query: 274 ENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSI 333
            NE+  LEQ+   +R++       +E  + +L E+   ++EL ++ A  +++L+ +++ +
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353

Query: 334 KECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKE 393
           +    E +  + E    E  + E  +++E  +++    + +        I  L+   E+ 
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS-LNNEIERLEARLERL 412

Query: 394 KH----FDSLKKGLEDRLQDLEIKE---------REFEKRVKEFELREKEFGSIRKAVED 440
           +          + L  +L++ E+KE          E E+  +E E  E+    +R+ +E 
Sbjct: 413 EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE- 471

Query: 441 CSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQKHDSI 478
                 L A   +  +L +    L+ L        + +
Sbjct: 472 -EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV 508

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 62.1 bits (151), Expect = 7e-10
 Identities = 93/461 (20%), Positives = 203/461 (44%), Gaps = 40/461 (8%)

Query: 7   NISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDV 66
            + E ++ A++K E L     ++    +   +     ++L+E   L +   E++  +++ 
Sbjct: 175 LLKEVIKEAKAKIEELEGQ--LSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQ 232

Query: 67  KIRLLDQRAKEIESKEIELVLVGKKIEDCNG--------------ELACKKKELGLVQKR 112
           +I  L++R  E+E ++  L  +  ++ +                 EL    +EL    +R
Sbjct: 233 EIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIER 292

Query: 113 IGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEI 172
           + E +RE++  E EL  L   L   +E L  ++    + +  +++L+ L++ ++E  +E 
Sbjct: 293 LEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEK 352

Query: 173 ELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDK----ERPYDEVKKSL 228
               K + E  + +EE  ++L  +  K       +EE  + LK++        +E+++ L
Sbjct: 353 NELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEEL 412

Query: 229 ILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQ------------GRVRLHENE 276
              E +LE  ++ELE  +  IK+L  + +  + K  ++             G+    E+E
Sbjct: 413 EELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHE 472

Query: 277 VESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKEL---KFVQQSI 333
            E LE     + + +++     + +     EI +  +EL +      + L   + +++ +
Sbjct: 473 KELLELYELELEELEEEL-SREKEEAELREEIEELEKELRELEEELIELLELEEALKEEL 531

Query: 334 KECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTI----GYLKEL 389
           +E  ++ +   EE    ++ +     + EL++ +  L + +  L + R +      L+EL
Sbjct: 532 EEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEEL 591

Query: 390 KEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKE 430
           +E+ K      K LE+RL  LE   +  E    E EL E E
Sbjct: 592 RERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAE 632

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 62.0 bits (151), Expect = 9e-10
 Identities = 53/255 (20%), Positives = 118/255 (46%), Gaps = 18/255 (7%)

Query: 171 EIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLIL 230
           EIE  E+K+ E++  I E EK LA    ++  +   +E+  + L++  R    ++K L  
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737

Query: 231 CETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQ 290
            E ++E  ++ +      + EL  +    +E+LE  +  +   E E+E LE +++ ++  
Sbjct: 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK-- 795

Query: 291 QKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESIST 350
                ++++  +  L+E+   +  LN++ A+  + L+ +++ I    +  +  +E+    
Sbjct: 796 -----EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850

Query: 351 EKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDL 410
            + I   + E+E  + +  + + ES L           L E+    ++L   L   L++L
Sbjct: 851 SEDIESLAAEIE--ELEELIEELESEL--------EALLNERASLEEALAL-LRSELEEL 899

Query: 411 EIKEREFEKRVKEFE 425
             + RE E +  E  
Sbjct: 900 SEELRELESKRSELR 914

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 60.5 bits (147), Expect = 3e-09
 Identities = 66/321 (20%), Positives = 144/321 (44%), Gaps = 13/321 (4%)

Query: 21  ALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIES 80
           A R     +RS+   +     + + L+  L   +  L +  N +D   + L   +++I  
Sbjct: 661 APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE 720

Query: 81  KEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEE 140
            E E+  + ++ E     L   +++L  +++ I   K EL+  E  +  L   L+  +E 
Sbjct: 721 IEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA 780

Query: 141 LCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKI 200
           L            N  E +L  + I E   E+   E++V  ++  + E E++L     + 
Sbjct: 781 L------------NDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK 828

Query: 201 SSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQ 260
             +   I+E +E   D +     ++K +     K E  ++ELE  ++++++L  +    +
Sbjct: 829 EYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK 888

Query: 261 EKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPA 320
           ++ + L+ ++R  E ++E LE +++  RK+  +    +E  + EL+EI     E  + P 
Sbjct: 889 KERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE 948

Query: 321 SKDKELKFVQQSIKECSKEFQ 341
             +  L+ VQ  ++   +E +
Sbjct: 949 E-ELSLEDVQAELQRVEEEIR 968

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 59.7 bits (145), Expect = 4e-09
 Identities = 97/426 (22%), Positives = 187/426 (43%), Gaps = 51/426 (11%)

Query: 49  HLDLTKKSLEK---QSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKE 105
            +    + LEK   ++ +++    L+ ++ KE+E    E+  +  ++ +   EL   +KE
Sbjct: 173 EIKRRIERLEKFIKRTENIE---ELIKEKEKELEEVLREINEISSELPELREELEKLEKE 229

Query: 106 LGLVQK---RIGECKRELQLKENELNSLSG----------SLNLKKEELCSVQGWINKCQ 152
           +  +++    I E ++EL+  E     L             L  + EEL      + + +
Sbjct: 230 VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK 289

Query: 153 ANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEE 212
              +E   L    +E  DE+   EK++  ++  I   E+++   E K   +  L ++ +E
Sbjct: 290 EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKE 349

Query: 213 VLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRL 272
           + K  E   +  +        K E E+ +  LT  + ++L       +++LE L+     
Sbjct: 350 LEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKL-------EKELEELEKAKEE 402

Query: 273 HENEVESLEQELDSMRKQQKKYFDDV-ELKK---------RELNE--IGKYIEELNQDPA 320
            E E+  +   +  ++K+ K+    + ELKK         REL E    + +EE   +  
Sbjct: 403 IEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELK 462

Query: 321 SKDKELKFVQQSIKECSKEFQ-----WKKEESISTEKTIAECSKEVELKKNQFNLTQHES 375
             +KELK +++  ++  KE +      KKE  +   K +AE  KE+E K  ++NL + E 
Sbjct: 463 RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEK 522

Query: 376 N-----LFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEF--ELRE 428
                   + + I    E+K  +K  + L + L+ +L +LE K  E E+ + E   EL E
Sbjct: 523 KAEEYEKLKEKLIKLKGEIKSLKKELEKL-EELKKKLAELEKKLDELEEELAELLKELEE 581

Query: 429 KEFGSI 434
             F S+
Sbjct: 582 LGFESV 587

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 60.1 bits (146), Expect = 4e-09
 Identities = 54/282 (19%), Positives = 121/282 (42%), Gaps = 13/282 (4%)

Query: 74  RAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGS 133
             KE E+ E +   + +++     EL    +E+  ++KR+ E ++ L+    ++  L   
Sbjct: 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE 287

Query: 134 LNLK-KEELCSVQGWINKCQANQKELQL-LKNLIKECCDEIELREKKVGEVQRSIEEHEK 191
             L+ KE++  ++  I   + +  E +  L++  +         +K + E    IEE E+
Sbjct: 288 EQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE----IEELER 343

Query: 192 QLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKE 251
           ++  +  +   +     E +E L+D     +EV K       +L+  +++LE  +  I E
Sbjct: 344 EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403

Query: 252 LWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKY 311
           L       + +L+ LQ  ++    E+  L   +  +  +  +  ++ E K  E+ +    
Sbjct: 404 L-------KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK 456

Query: 312 IEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKT 353
           +E+L  D +  ++EL  +++      KE    + E    E  
Sbjct: 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 59.7 bits (145), Expect = 5e-09
 Identities = 95/463 (20%), Positives = 203/463 (43%), Gaps = 52/463 (11%)

Query: 8   ISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVK 67
           + EEL   E + + L    +        +    G    LEE +    + LE++  ++  +
Sbjct: 219 LREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI----RELEERIEELKKE 274

Query: 68  IRLLDQRAK---EIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKR---ELQ 121
           I  L+++ K   E++ K  E + + +  E+   EL   +K L  +++ I   +    EL+
Sbjct: 275 IEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE 334

Query: 122 LKENELNSLSGSLNLKKEELCSVQGWINKCQ-ANQKELQLLKNLIKECCDEIELREKKVG 180
            KE  L  L   L   ++ L  ++      + A  K+ +L +   +      E  EK++ 
Sbjct: 335 EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELE 394

Query: 181 EVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKE----------RPYDEVKKSLIL 230
           E++++ EE E++++   ++I  ++  I+E ++ +++ +          R   E  +  +L
Sbjct: 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELL 454

Query: 231 CETKLESEK--KELELTQSSIKELWMKFHSEQEKLELLQGRVRLHE--NEVESLEQELDS 286
            E   E ++  KEL+  +   ++L  +    ++ L+     ++L E   +++ LE++L  
Sbjct: 455 EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKK 514

Query: 287 MRKQQ-KKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKE 345
              ++ +K  ++ E  K +L ++   I+ L ++   K +ELK     +++   E + +  
Sbjct: 515 YNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKE-LEKLEELKKKLAELEKKLDELEEELA 573

Query: 346 ESIS-TEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLK---K 401
           E +   E+   E  +E+E +                     LKEL+     +  LK   K
Sbjct: 574 ELLKELEELGFESVEELEER---------------------LKELEPFYNEYLELKDAEK 612

Query: 402 GLEDRLQDLEIKEREFEKRVKEFELREKEFGSIRKAVEDCSKN 444
            LE   ++L+  E E +K  +E    EK    +RK +E+  K 
Sbjct: 613 ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 103/452 (22%), Positives = 194/452 (42%), Gaps = 58/452 (12%)

Query: 45  DLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKK 104
           ++EE +   +K LE+   +++     L +  +E+E  E E+    K++E+   E+   +K
Sbjct: 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV----KELEELKEEIEELEK 245

Query: 105 ELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNL 164
           EL  ++      KR+L+ K  EL      L  + EEL      + + +   +E   L   
Sbjct: 246 ELESLEGS----KRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEF 301

Query: 165 IKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEV 224
            +E  DE+   EK++  ++  I   E+++   E K   +  L ++ +E+ K  E   +  
Sbjct: 302 YEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERH 361

Query: 225 KKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQEL 284
           +        K E E+ +  LT  + ++L       +++LE L+      E E+  +   +
Sbjct: 362 ELYEEAKAKKEELERLKKRLTGLTPEKL-------EKELEELEKAKEEIEEEISKITARI 414

Query: 285 DSMRKQQKKYFDDV-ELKK---------RELNE--IGKYIEELNQDPASKDKELKFVQQS 332
             ++K+ K+    + ELKK         REL E    + +EE   +    +KELK +++ 
Sbjct: 415 GELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEK 474

Query: 333 IKECSKEFQ-----WKKEESISTEKTIAECSKEVELKKNQFNLTQHESN-----LFQTRT 382
            ++  KE +      KKE  +   K +AE  KE+E K  ++NL + E         + + 
Sbjct: 475 ERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKL 534

Query: 383 IGYLKELK------EKEKHFDSLKKGLEDRLQDLEIK---------------EREFEKRV 421
           I    E+K      EK +        LE +L +LE +                 E E+R+
Sbjct: 535 IKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERL 594

Query: 422 KEFELREKEFGSIRKAVEDCSKNLLLQAKTED 453
           KE E    E+  ++ A ++  +      K E+
Sbjct: 595 KELEPFYNEYLELKDAEKELEREEKELKKLEE 626

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 68/362 (18%), Positives = 157/362 (43%), Gaps = 39/362 (10%)

Query: 101  CKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQL 160
             +++E+  ++++I E + ++   E  L  L   L   +EEL  ++  +   +   +++  
Sbjct: 674  ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL---EELSRQISA 730

Query: 161  LKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERP 220
            L+  +     E+E  E+++ ++ + + E E ++   E ++      + E E  +++ E  
Sbjct: 731  LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790

Query: 221  YDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESL 280
             +++K+ L      L+  + EL L          +  + +E+LE L       E  + + 
Sbjct: 791  IEQLKEELKALREALDELRAELTLLNE-------EAANLRERLESL-------ERRIAAT 836

Query: 281  EQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEF 340
            E+ L+ + +Q ++  +D+E    E+ E+ + IEEL  +  +   E   +++++     E 
Sbjct: 837  ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896

Query: 341  QWKKEESISTEKTIAECSKEVELKKNQFN--------LTQHESNLFQTRTIGY---LKEL 389
            +   EE    E   +E  +E+E  + +          L     NL +  +  Y   L+E 
Sbjct: 897  EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA 956

Query: 390  KEKEKHFDSLKKGLEDRLQDLE--IKE---------REFEKRVKEFELREKEFGSIRKAV 438
            +  E   +  ++    RL+ LE  IKE          E+E+  + ++    +   + +A 
Sbjct: 957  EALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAK 1016

Query: 439  ED 440
            E 
Sbjct: 1017 ET 1018

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.4 bits (139), Expect = 3e-08
 Identities = 76/370 (20%), Positives = 156/370 (42%), Gaps = 50/370 (13%)

Query: 7    NISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLD--------------L 52
             + E++   E K   L ++    R +           ++LEE L+               
Sbjct: 681  ELEEKIEELEEKIAELEKALAELRKEL----------EELEEELEQLRKELEELSRQISA 730

Query: 53   TKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKR 112
             +K L +   +V+     + Q +KE+   E E+  + +++E+   ELA  + E+  ++ +
Sbjct: 731  LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790

Query: 113  IGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQAN----QKELQLLKNLIKEC 168
            I + K EL+     L+ L   L L  EE  +++  +   +      ++ L+ L+  I+E 
Sbjct: 791  IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850

Query: 169  CDEIELREKKVGEVQRSIEEHEKQL----AFKESKISSMRTLIEEYEEV---LKDKERPY 221
             ++IE    ++ E++  IEE E +L      + S   ++  L  E EE+   L++ E   
Sbjct: 851  SEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910

Query: 222  DEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQE-KLELLQGRVRLHENEVESL 280
             E+++ L     KL   +  LE  +  I  L  +   E    LE  +      E++ E  
Sbjct: 911  SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA 970

Query: 281  EQELDSMRKQQKKYFDDV---------ELKKRELNEIGKYIEELNQDPASKDKELKFVQQ 331
             + L  + + + K    V         ELK+R  + +    E+L +   +K+   + +++
Sbjct: 971  RRRLKRL-ENKIKELGPVNLAAIEEYEELKER-YDFLTAQKEDLTE---AKETLEEAIEE 1025

Query: 332  SIKECSKEFQ 341
              +E  + F+
Sbjct: 1026 IDREARERFK 1035

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 53/268 (19%), Positives = 126/268 (47%), Gaps = 9/268 (3%)

Query: 156 KELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLK 215
           K L  +   IK   + +E   K+   ++  I+E EK+L     +I+ + + + E  E L+
Sbjct: 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELE 224

Query: 216 DKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHEN 275
             E+   E+++     + ++E  +KELE  + S ++L  K    +E++E     ++    
Sbjct: 225 KLEKEVKELEEL----KEEIEELEKELESLEGSKRKLEEKIRELEERIE----ELKKEIE 276

Query: 276 EVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKE 335
           E+E   +EL  ++++ ++Y    E  +  L+E+ + IE+       +   ++   + ++E
Sbjct: 277 ELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE-IEKRLSRLEEEINGIEERIKELEE 335

Query: 336 CSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKH 395
             +  +  K++    EK + E  +  EL +      +    L +  T    ++L+++ + 
Sbjct: 336 KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEE 395

Query: 396 FDSLKKGLEDRLQDLEIKEREFEKRVKE 423
            +  K+ +E+ +  +  +  E +K +KE
Sbjct: 396 LEKAKEEIEEEISKITARIGELKKEIKE 423

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 75/342 (21%), Positives = 145/342 (42%), Gaps = 33/342 (9%)

Query: 9    SEELRVAESKKEALRRSFDIARSQ-----------SNSVPVFTGQWDDLEEHLDLTKKSL 57
              EL+    + E L+R     +S+           S  +   + +  ++E+ ++  ++  
Sbjct: 673  PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732

Query: 58   EKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELG-----LVQKR 112
            EK    ++     L    +EIE+ + EL  +  +IE+   +L   ++ L      L   R
Sbjct: 733  EKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR 792

Query: 113  IGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQ----LLKNLIKEC 168
            I E + EL   E E++ +   L   +++L  +       +   +ELQ     LK  IK  
Sbjct: 793  IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852

Query: 169  CDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSL 228
              EIE    K  E++  +EE E  L   ES++  ++   +E E  L++ ER  +E++  +
Sbjct: 853  EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912

Query: 229  ILCETKLESEKKELELTQSSIKELWMKFHSEQE------KLELLQGRVRLHENEVESLE- 281
                 +L   K +LE  +  + E+      ++E       LE +Q  ++  E E+ +LE 
Sbjct: 913  EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEP 972

Query: 282  ------QELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQ 317
                  QE + + K+  +  +     + E   I + IEE  +
Sbjct: 973  VNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 6e-07
 Identities = 54/273 (19%), Positives = 127/273 (46%), Gaps = 12/273 (4%)

Query: 44   DDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKK 103
            ++LEE L+  ++ LE+   +++     L +  +EIE  E +   + +++E+   EL   +
Sbjct: 747  EELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAE 806

Query: 104  KELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKN 163
            + L  +++ +   ++  +  E E+  L       +EE+   +    K    ++EL+ L+ 
Sbjct: 807  RRLDALERELESLEQRRERLEQEIEEL-------EEEI---EELEEKLDELEEELEELEK 856

Query: 164  LIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDE 223
             ++E  +E+E  E +  E++  ++E E++    E ++  + + + E +E ++      +E
Sbjct: 857  ELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916

Query: 224  VKKSLILCETKLES--EKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLE 281
            ++  L   E +L    E+ E E   +   EL  +    +E++E L         E E +E
Sbjct: 917  LEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVE 976

Query: 282  QELDSMRKQQKKYFDDVELKKRELNEIGKYIEE 314
            +  + ++ Q++   +  E     + E+ K   E
Sbjct: 977  ERYEELKSQREDLEEAKEKLLEVIEELDKEKRE 1009

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 75/319 (23%), Positives = 146/319 (45%), Gaps = 39/319 (12%)

Query: 7   NISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDV 66
            I +EL+  E K+  LR+                   +  E+      K LE++    ++
Sbjct: 463 RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQ-----LKELEEKLKKYNL 517

Query: 67  KIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACK---KKELGLVQKRIGECKRELQLK 123
           +   L+++A+E E  + +L+ +  +I+    EL      KK+L  ++K++ E + EL   
Sbjct: 518 E--ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAEL 575

Query: 124 ENELNSLSGS----LNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKV 179
             EL  L       L  + +EL        + +  +KEL+  +  +K+  +E++   +++
Sbjct: 576 LKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEEL 635

Query: 180 GEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEK 239
            E ++ +EE  K+L   E K S      EEYEE        Y E+ + L     +LE  +
Sbjct: 636 AETEKRLEELRKELEELEKKYSE-----EEYEE----LREEYLELSRELAGLRAELEELE 686

Query: 240 KELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSM---RKQQKKYFD 296
           K  E  + ++++L      ++E  E  + +      E+E LE+ L+ +   R++ KKY  
Sbjct: 687 KRREEIKKTLEKL------KEELEEREKAK-----KELEKLEKALERVEELREKVKKY-- 733

Query: 297 DVELKKRELNEIGKYIEEL 315
              LK+R L+++G+   E+
Sbjct: 734 KALLKERALSKVGEIASEI 752

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 18/257 (7%)

Query: 197 ESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETK------------LESEKKELEL 244
           E+K    R + EE   + K KER  +  +K   L  T+            LE + K LE 
Sbjct: 151 EAKPEERRAIFEEAAGISKYKERRKETERK---LERTRENLDRLEDILNELERQLKSLER 207

Query: 245 TQSSIKELWMKFHSEQEKLE--LLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKK 302
            Q+   E + +  +E  +LE  LL  R+     E+E L++EL    ++ ++   +++  +
Sbjct: 208 -QAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELE 266

Query: 303 RELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVE 362
            +L E+   + EL ++     KEL  +   I    ++ Q  +E   + E+ + E   ++E
Sbjct: 267 EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326

Query: 363 LKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVK 422
             +++ +    E    + +     +EL+  E   + L+  LE+    LE  E + E    
Sbjct: 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386

Query: 423 EFELREKEFGSIRKAVE 439
           +    E +  S+   +E
Sbjct: 387 KVAQLELQIASLNNEIE 403

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 49.7 bits (119), Expect = 5e-06
 Identities = 55/302 (18%), Positives = 117/302 (38%), Gaps = 54/302 (17%)

Query: 41  GQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIED-CNGEL 99
            + + LE   +  ++ L     +++     + +  K +E  E  L  + KKI+D    E 
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289

Query: 100 ACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQG------------- 146
              K+++G ++  I   +R +  KE EL      L   + E+  +               
Sbjct: 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER 349

Query: 147 -----WINKCQANQKELQLLKNLI-------KECCDEIELREKKVGEVQRSIEEHEK--- 191
                   +    ++EL+ L+  +        E  DE++   +K+ +++R I E ++   
Sbjct: 350 KRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409

Query: 192 -----------QLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKK 240
                      +LA   + I+ +   I E EE  +DK     E+KK     E KLE    
Sbjct: 410 RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA---LEIKKQ----EWKLEQLAA 462

Query: 241 ELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVEL 300
           +L   +  + +L       +E+ + ++  +   + E+   E +  +  ++ +      E+
Sbjct: 463 DLSKYEQELYDL-------KEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEV 515

Query: 301 KK 302
            K
Sbjct: 516 LK 517

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 49.7 bits (119), Expect = 6e-06
 Identities = 37/188 (19%), Positives = 84/188 (44%), Gaps = 5/188 (2%)

Query: 258 SEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQ 317
           SE  +L+ L+ R+   + E+ SL+ EL  +  +  +   ++    R++ EI K IE+L Q
Sbjct: 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730

Query: 318 DPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNL 377
           +     + L+ +++ +    +E +  K E    E  I E  +++   +   N  +   + 
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790

Query: 378 FQTRTIGYL-----KELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKEFG 432
            +   I        +E+   E     +++ L     + E  E+E ++  ++    +++  
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850

Query: 433 SIRKAVED 440
           SI K +E+
Sbjct: 851 SIEKEIEN 858

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family

 Score = 49.3 bits (118), Expect = 7e-06
 Identities = 48/305 (15%), Positives = 119/305 (39%), Gaps = 31/305 (10%)

Query: 165 IKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLK-DKERPYDE 223
           I++  +++   ++K     R  +E E++L   ESKI  +   +++          + + +
Sbjct: 12  IRDLNEDVSAFQRKFVNEVRRCDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLD 71

Query: 224 VKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQE 283
           +++ +      LE+E KE+E    S+++   + +  +E L +L       + E   L++ 
Sbjct: 72  LEEEI----LDLEAEIKEVEENLESLEK---EINELEEWLNVL-------DEEKSFLDEN 117

Query: 284 LDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPA-------SKDKELKFVQQSIKEC 336
           L+ + +      D   L+  E  ++G     +N++          +       Q  I+E 
Sbjct: 118 LEELSELSNLDIDFKYLRGAEGLKLGFVAGVINREKLEAFERELWRACRGYIRQAEIEEP 177

Query: 337 SKEFQWKKEESISTEKTIAECSKEV--ELKKNQFNLTQHESNLFQTRTIGYLKELKEKEK 394
            ++ +          K   +  K++        +++ + E            K ++E ++
Sbjct: 178 LEDPKKTVFIIFFVGKEDLDKVKKILDSFGFELYDVPETE-GERSELISKVNKRIEELQR 236

Query: 395 HFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKEFGSIRKAVEDCSKNLLLQA--KTE 452
             +  +  LE  L  +  +   ++++V     +EK            +K L+ +     +
Sbjct: 237 VLEQTESHLEKVLVKIADELLAWDEQVS----KEKAVYETLNLFNYDTKTLIAEGWVPAK 292

Query: 453 DPEKL 457
           D EKL
Sbjct: 293 DLEKL 297

This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.9 bits (117), Expect = 1e-05
 Identities = 64/327 (19%), Positives = 156/327 (47%), Gaps = 19/327 (5%)

Query: 48  EHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELG 107
           E L+  ++++E+    +D K + L++  +E E  E    L+ +K E    EL  +K+ L 
Sbjct: 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEAL- 235

Query: 108 LVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKE 167
             +++    +R+L   E EL  L+  ++  ++ L          +  Q   +L K +   
Sbjct: 236 --ERQKEAIERQLASLEEELEKLTEEISELEKRLE---------EIEQLLEELNKKIKDL 284

Query: 168 CCDEIELREKKVGEV-------QRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERP 220
             +E    ++K+GE+       +RSI E E++L   E +++ +   I++    +++ ER 
Sbjct: 285 GEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE 344

Query: 221 YDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESL 280
            +E +K       +    K+ELE  ++ ++E+  +F   +++L+  + ++   + E+  L
Sbjct: 345 IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404

Query: 281 EQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEF 340
           ++ELD ++++ ++  +++      +  I   I EL ++   K  E+K  +  +++ + + 
Sbjct: 405 KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL 464

Query: 341 QWKKEESISTEKTIAECSKEVELKKNQ 367
              ++E    ++      KE+   + +
Sbjct: 465 SKYEQELYDLKEEYDRVEKELSKLQRE 491

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.4 bits (113), Expect = 3e-05
 Identities = 52/285 (18%), Positives = 116/285 (40%), Gaps = 21/285 (7%)

Query: 173 ELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCE 232
           E RE +  E+ +  E  E+Q    E +++S+   +E+  E + + E+  +E+++ L    
Sbjct: 219 EKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELN 278

Query: 233 TKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQK 292
            K++   +E +L               +EK+  L+  +   E  +   E+EL+   ++  
Sbjct: 279 KKIKDLGEEEQLRV-------------KEKIGELEAEIASLERSIAEKERELEDAEERLA 325

Query: 293 KYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEK 352
           K          E++++   IEEL ++   + K    + +   E  +E +  + E    +K
Sbjct: 326 KLEA-------EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK 378

Query: 353 TIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEI 412
             AE   E++  + +    + E N  +       +EL+   +    L   +      +  
Sbjct: 379 EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438

Query: 413 KEREFEKRVKEFELREKEFGSIRKAVEDCSKNLL-LQAKTEDPEK 456
            E E E +  E + +E +   +   +    + L  L+ + +  EK
Sbjct: 439 LEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|185746 cd08915, V_Alix_like, Protein-interacting V-domain of mammalian Alix and related domains

 Score = 45.4 bits (108), Expect = 7e-05
 Identities = 49/305 (16%), Positives = 116/305 (38%), Gaps = 40/305 (13%)

Query: 135 NLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLA 194
           +++  +    +G ++  +   +  + L  L +   + ++       E +  +EE   +  
Sbjct: 59  SIQHSQEIIEEGGLDNIE---QSFKELSKLRQNVEELLQ-------ECEELLEEEAAEDD 108

Query: 195 FKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLI-------LCETKLESEKKELELTQS 247
              +K  ++R      +E  K+      +++  L              ES    L L   
Sbjct: 109 QLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASNSDNEVLQCYESIDPNLVLLCG 168

Query: 248 SIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNE 307
             KEL     S    L+     V    + +  L  E+  + K+++++  ++E+K R  + 
Sbjct: 169 GYKELKAFIPSPYPALD---PEVSEVVSSLRPLLNEVSELEKERERFISELEIKSRNNDI 225

Query: 308 IGKYIEELNQDPASK-----DKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVE 362
           + K I E  ++  ++     ++ LK   + +    K     K++ I          KE++
Sbjct: 226 LPKLITEYKKNGTTEFEDLFEEHLKKFDKDLTYVEKT----KKKQIELI-------KEID 274

Query: 363 LKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRL---QDLEIKEREFEK 419
               +F+  ++ ++    R    L++L+   K +  LK+ L +      DL  K     +
Sbjct: 275 AANQEFSQVKNSNDSLDPREE-ALQDLEASYKKYLELKENLNEGSKFYNDLIEKVNRLLE 333

Query: 420 RVKEF 424
             ++F
Sbjct: 334 ECEDF 338

This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains a binding site, partially conserved in this superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Members of this superfamily have an N-terminal Bro1-like domain, which binds components of the ESCRT-III complex. The Bro1-like domains of Alix and HD-PTP can also bind human immunodeficiency virus type 1 (HIV-1) nucleocapsid. Many members, including Alix, HD-PTP, and Bro1, also have a proline-rich region (PRR), which binds multiple partners in Alix, including Tsg101 (tumor susceptibility gene 101, a component of ESCRT-1) and the apoptotic protein ALG-2. The C-terminal portion (V-domain and PRR) of Bro1 interacts with Doa4, a ubiquitin thiolesterase needed to remove ubiquitin from MVB cargoes; it interacts with a YPxL motif in Doa4s catalytic domain to stimulate its deubiquitination activity. Rim20 may bind the ESCRT-III subunit Snf7, bringing the protease Rim13 (a YPxL-containing transcription factor) into proximity with Rim101, and promoting the proteolytic activation of Rim101. HD-PTP is encoded by the PTPN23 gene, a tumor suppressor gene candidate often absent in human kidney, breast, lung, and cervical tumors. HD-PTP has a C-terminal catalytically inactive tyrosine phosphatase domain. Length = 342

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 28/142 (19%), Positives = 65/142 (45%), Gaps = 5/142 (3%)

Query: 223 EVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQ 282
           ++       E +++  +K L+  ++ ++ L     + + +LE L+ +V   E+E++ + +
Sbjct: 14  KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRE 73

Query: 283 ELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQW 342
            +    ++     D+     REL  +   I+   +   S + EL  + + I++  KE + 
Sbjct: 74  RIKRAEEKLSAVKDE-----RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIED 128

Query: 343 KKEESISTEKTIAECSKEVELK 364
            KE     EK +AE    +E +
Sbjct: 129 LKERLERLEKNLAEAEARLEEE 150

Length = 239

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 64/413 (15%), Positives = 167/413 (40%), Gaps = 18/413 (4%)

Query: 46  LEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKE 105
             + ++ T+  L K + ++    +  +    E+ESKE +L     K+ D  G    +   
Sbjct: 582 KSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESD- 640

Query: 106 LGLVQKRIGECKRELQL---KENELNSLSGSLNLKKEELCSVQGWINKCQANQKEL-QLL 161
           L  +++ I +  ++  +        +     L  + +  C V   + + +A  +E    L
Sbjct: 641 LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDL 700

Query: 162 KNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPY 221
           ++ ++   D+++  E ++ + ++  +E       ++S I      I E    L+   R  
Sbjct: 701 QSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDI 760

Query: 222 DEVKKSLILCETKLESEKKELELTQ------SSIKELWMKFHSEQEKLELLQGRVRLHEN 275
             +K  +   ET L +   E E  +      + ++   M+    + K+   Q   +L  +
Sbjct: 761 QRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIA--QQAAKLQGS 818

Query: 276 EVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKE 335
           +++   Q+++  +++++   D V  K     ++ +  +E  Q   SK  ELK  +  I  
Sbjct: 819 DLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT 878

Query: 336 CSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKH 395
             +  Q  +E+ +     +    +E++  K Q +  +      Q      +   +   K 
Sbjct: 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKK 938

Query: 396 FDSLKKGLEDRLQDLEIKEREFEKRVKE-----FELREKEFGSIRKAVEDCSK 443
                  ++++++++    ++ E ++++      + +E E  ++   +E+C K
Sbjct: 939 AQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEK 991

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 46/236 (19%), Positives = 103/236 (43%), Gaps = 28/236 (11%)

Query: 238 EKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDD 297
            K+     +  +KEL  +    + +LE L+  ++  +NE+ SLE  L+ +R+Q ++    
Sbjct: 658 NKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQ 717

Query: 298 VELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSK------------------- 338
           +E  KREL  + + +E+L       ++EL+ +++ ++E  +                   
Sbjct: 718 LEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKL 777

Query: 339 -----EFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKE 393
                E + K++      + + E  +E E + +            + R    ++EL+E+ 
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837

Query: 394 KHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELR----EKEFGSIRKAVEDCSKNL 445
           +  +     LE+ L++LE +  E ++ ++E E      E E   + +  E+  + L
Sbjct: 838 EELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893

Length = 1163

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 44.2 bits (104), Expect = 3e-04
 Identities = 48/258 (18%), Positives = 100/258 (38%), Gaps = 14/258 (5%)

Query: 173 ELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCE 232
           +L E+     +  I+  E +L   + K  + + L     +   + E         L L E
Sbjct: 178 KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNE 237

Query: 233 TKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQK 292
            +++  ++ L   Q  I+    +   E+E L  +         E +  E+E     ++ K
Sbjct: 238 ERIDLLQELLRDEQEEIESSKQELEKEEEILAQVL-------KENKEEEKEKKLQEEELK 290

Query: 293 KYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEK 352
               + E  K EL +       L +     +++LK  ++ +K+  KE + +KEE    EK
Sbjct: 291 LLAKEEEELKSELLK-------LERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEK 343

Query: 353 TIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEI 412
            + E   + E ++ +    +      +      L + K + +   S  K  E+ L+    
Sbjct: 344 ELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNE 403

Query: 413 KEREFEKRVKEFELREKE 430
           +E+E +  ++  E  E  
Sbjct: 404 EEKEAKLLLELSEQEEDL 421

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 49/234 (20%), Positives = 112/234 (47%), Gaps = 10/234 (4%)

Query: 209 EYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQG 268
           E + +L+  E     V++  IL     E+  K L      IK    +     ++ E ++ 
Sbjct: 136 EIDAILESDESREKVVRQ--ILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEE 193

Query: 269 RVRLHENEVESLEQELDSMRKQQKKY---FDDVELKKRELNEIGKYIEELNQDPASKDKE 325
            ++  E E+E + +E++ +  +  +     + +E + +EL E+ + IEEL ++  S +  
Sbjct: 194 LIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGS 253

Query: 326 LKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGY 385
            + +++ I+E  +  +  K+E    E+ + E  KE++ K  ++     + + F    +  
Sbjct: 254 KRKLEEKIRELEERIEELKKEIEELEEKVKE-LKELKEKAEEYI----KLSEFYEEYLDE 308

Query: 386 LKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKEFGSIRKAVE 439
           L+E++++    +    G+E+R+++LE KE   E+  K+ +  EK    + +  E
Sbjct: 309 LREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE 362

Length = 880

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 43.0 bits (101), Expect = 6e-04
 Identities = 57/314 (18%), Positives = 128/314 (40%), Gaps = 50/314 (15%)

Query: 44  DDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKK 103
           + LE + D  K  ++     +  +I  +D   ++++S  +EL  + K+I D        +
Sbjct: 162 NSLERNYDKLKDVID----MLRAEISNIDYLEEKLKSSNLELENIKKQIAD-------DE 210

Query: 104 KELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKN 163
           K   +  K I     E     ++ N+L  +LN    EL S++   N+ ++  K  +    
Sbjct: 211 KSHSITLKEIERLSIEYNNAMDDYNNLKSALN----ELSSLEDMKNRYESEIKTAE---- 262

Query: 164 LIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKE----- 218
                  ++ +  +K    +   E H K        +   R  I +Y +   D E     
Sbjct: 263 ------SDLSMELEKNNYYKELEERHMK---IINDPVYKNRNYINDYFKYKNDIENKKQI 313

Query: 219 --------RPYDEVKKSLILCET------KLESEKKELELTQSSIKELWMKFHSEQEKLE 264
                     Y  + K L + +       K +S   +L      ++   M ++S  + +E
Sbjct: 314 LSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIE 373

Query: 265 LLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDK 324
            L+ ++  +   +E +   +  + K Q     D +  K+ELNEI   +++++   +S ++
Sbjct: 374 SLKKKIEEYSKNIERMSAFISEILKIQ---EIDPDAIKKELNEINVKLQDISSKVSSLNQ 430

Query: 325 ELKFVQQSIKECSK 338
            ++ +++++ E S+
Sbjct: 431 RIRALRENLDELSR 444

Length = 895

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 7e-04
 Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 26/257 (10%)

Query: 7    NISEELRVAESKKEALRRSFD----IARSQSNSVPVFTGQWDDLEEHLD---LTKKSLEK 59
             + EEL   E     L+   +      ++    +     + ++ E  LD      +SLE+
Sbjct: 762  ELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQ 821

Query: 60   QSNDVDVKIRLLDQRAKEIESK----EIELVLVGKKIEDCNGELACKKKELGLVQKRIGE 115
            +   ++ +I  L++  +E+E K    E EL  + K++E+   EL   + E   ++  + E
Sbjct: 822  RRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE 881

Query: 116  CKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELR 175
             + E +  E EL  L   L   KEE+              ++L+     ++   + +E+ 
Sbjct: 882  LEEEKEELEEELRELESELAELKEEI--------------EKLRERLEELEAKLERLEVE 927

Query: 176  EKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKL 235
              ++ E      E +      E +I  +   IE    V       Y+EV++     +++ 
Sbjct: 928  LPELEEELEEEYE-DTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQR 986

Query: 236  ESEKKELELTQSSIKEL 252
            E  ++  E     I+EL
Sbjct: 987  EDLEEAKEKLLEVIEEL 1003

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 42/243 (17%), Positives = 103/243 (42%), Gaps = 13/243 (5%)

Query: 8   ISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVK 67
           + E++   E++  +L RS      +         +   LE  +D     +E+   +++ +
Sbjct: 292 VKEKIGELEAEIASLERSIAEKERELEDA---EERLAKLEAEIDKLLAEIEELEREIEEE 348

Query: 68  IRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENEL 127
            +  D+  +E    + EL  +  ++E+ + E A  + EL   ++++ + KRE+    NEL
Sbjct: 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI----NEL 404

Query: 128 NSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIE 187
                 L  + + L      +N        +  ++  I E  +E E +  ++ + +  +E
Sbjct: 405 KRELDRLQEELQRLSEELADLNA------AIAGIEAKINELEEEKEDKALEIKKQEWKLE 458

Query: 188 EHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQS 247
           +    L+  E ++  ++   +  E+ L   +R   E +      E ++   +   E+ ++
Sbjct: 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518

Query: 248 SIK 250
           SI+
Sbjct: 519 SIQ 521

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.3 bits (96), Expect = 0.002
 Identities = 86/454 (18%), Positives = 186/454 (40%), Gaps = 36/454 (7%)

Query: 9    SEELRVAESKKEA--LRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKS--LEKQSNDV 64
            ++EL+ AE KK+A   +++ +  ++            D+ ++  +  KK+   +K++ + 
Sbjct: 1280 ADELKKAEEKKKADEAKKAEEKKKA------------DEAKKKAEEAKKADEAKKKAEEA 1327

Query: 65   DVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKE 124
              K     ++A+E   K  E      +      E A +K E    +K   + K +   K+
Sbjct: 1328 KKKADAAKKKAEE-AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386

Query: 125  NELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREK-----KV 179
             E    +     K EE       + K  A +K+    K   +E     E ++K     K 
Sbjct: 1387 AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA 1446

Query: 180  GEVQRSIEEHEK--QLAFKESKISSMRTLIEEYEEVLKDKE--RPYDEVKKSLILCETKL 235
             E ++  EE +K  +   K  +        ++ EE  K  E  +  +E KK     +   
Sbjct: 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506

Query: 236  ESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYF 295
            E++KK  E  ++   +   +    +E  +  + +    + + + L++  +  + ++KK  
Sbjct: 1507 EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKA 1566

Query: 296  DDVELKKRELNEIGKYIEELNQ-DPASKDKELKFVQQSIKECSKEFQWKKEESISTE--- 351
            ++ +  + + N   +  EE  + + A  ++ +K  ++  K  ++E +  +E  I  E   
Sbjct: 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626

Query: 352  ------KTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLED 405
                  K + +  K+   +K +    +      + +     K+ +E +K  +  KK  ED
Sbjct: 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED 1686

Query: 406  RLQDLEIKEREFEKRVKEFELREKEFGSIRKAVE 439
              +  E  ++E E+  K  EL++KE    +KA E
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720

Length = 2084

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 64/314 (20%), Positives = 129/314 (41%), Gaps = 24/314 (7%)

Query: 54  KKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRI 113
           KK +E+  N  ++ I L + + +E++ KE               E    ++E  L    +
Sbjct: 177 KKLIEETENLAELIIDLEELKLQELKLKEQAKK---ALEYYQLKEKLELEEENLLYLDYL 233

Query: 114 GECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIE 173
              +  + L +  L      +   K+EL          +  ++ L  +    KE   E +
Sbjct: 234 KLNEERIDLLQELLRDEQEEIESSKQEL----------EKEEEILAQVLKENKEEEKEKK 283

Query: 174 LREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCET 233
           L+E+++  + +  EE + +L   E +       ++E E+ LK  E+   + K+ +     
Sbjct: 284 LQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIE---- 339

Query: 234 KLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKK 293
           +LE E KELE+ + + +E   +    QEKLE L+  +   +            +++++ +
Sbjct: 340 ELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 399

Query: 294 YFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKT 353
             ++ E + + L E+ +  E+L        KE K  +  I E  +E    K+  ++ EK 
Sbjct: 400 LKNEEEKEAKLLLELSEQEEDLL-------KEEKKEELKIVEELEESLETKQGKLTEEKE 452

Query: 354 IAECSKEVELKKNQ 367
             E      LK   
Sbjct: 453 ELEKQALKLLKDKL 466

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 50/314 (15%), Positives = 121/314 (38%), Gaps = 1/314 (0%)

Query: 50  LDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLV 109
           L   ++  EK  +++     L  Q   + + + I+  L   K+E         ++    +
Sbjct: 676 LLAEQELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKI 735

Query: 110 QKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECC 169
            + +   +++++ KE E          ++EE   +     +    +++ + LK   ++  
Sbjct: 736 NEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEE 795

Query: 170 DEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLI 229
                 E+     +   EE E     +       +   EE EE+  + +      K +  
Sbjct: 796 KLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE 855

Query: 230 LCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRK 289
             E   E   KE  L +  +KE  ++    +++LE  + + +  + E+E   Q+ + + +
Sbjct: 856 ELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEE 915

Query: 290 QQKKYFDDVELKKRELNEIGKYIEELN-QDPASKDKELKFVQQSIKECSKEFQWKKEESI 348
           ++ +  + +  +   L +     EEL  ++   K+KE    ++  +   +    K+E   
Sbjct: 916 KENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGN 975

Query: 349 STEKTIAECSKEVE 362
                IAE  ++ E
Sbjct: 976 VNLMAIAEFEEKEE 989

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.5 bits (96), Expect = 0.003
 Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 18/142 (12%)

Query: 155 QKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVL 214
           +KE + +K   KE    +E +E    E+ +   E EK+L  + +++  +   + + EE L
Sbjct: 48  KKEAEAIK---KEA--LLEAKE----EIHKLRNEFEKELRERRNELQKLEKRLLQKEENL 98

Query: 215 KDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQG------ 268
             K    ++ ++ L   E +LE +++ELE  +  ++EL  +   + ++LE + G      
Sbjct: 99  DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEE---QLQELERISGLTAEEA 155

Query: 269 RVRLHENEVESLEQELDSMRKQ 290
           +  L E   E    E   + K+
Sbjct: 156 KEILLEKVEEEARHEAAVLIKE 177

Length = 520

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.5 bits (95), Expect = 0.004
 Identities = 74/334 (22%), Positives = 134/334 (40%), Gaps = 29/334 (8%)

Query: 112 RIGECKRELQLKENELNSLSG-SLNLKKEELCSVQGW--INKCQANQKELQLLKNLIKEC 168
             GE    L+ K  E   +      L+K E  S      I + +A  +EL+   + + E 
Sbjct: 141 PQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLE- 199

Query: 169 CDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSL 228
            D  +L E    E++   E  + +   +E +   +   IE  EE L + E    E K+ L
Sbjct: 200 -DIEDLLEALEEELK---ELKKLEEIQEEQEEEELEQEIEALEERLAELE----EEKERL 251

Query: 229 ILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMR 288
              + +L   +          +E   +     E+LE    R+   E E+E LE+EL+ +R
Sbjct: 252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLR 311

Query: 289 KQQKKYFDDVELKKRELNEIGKY---IEELNQDPASKDKELKFVQQSIKECSKEFQWKKE 345
              ++  + +E  K     + K    +E+L  +     +E   + + ++E  KE + + E
Sbjct: 312 ALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLE 371

Query: 346 ESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLED 405
           E             E EL+K    L Q E  + + +    L EL    +      + LE 
Sbjct: 372 E------------LEKELEKALERLKQLEEAIQELKEE--LAELSAALEEIQEELEELEK 417

Query: 406 RLQDLEIKEREFEKRVKEFELREKEFGSIRKAVE 439
            L++LE +  E E+ +K+ E +  +  S    + 
Sbjct: 418 ELEELERELEELEEEIKKLEEQINQLESKELMIA 451

Length = 908

>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 47/244 (19%), Positives = 98/244 (40%), Gaps = 51/244 (20%)

Query: 160 LLKNLIKECCDEIELREKKVGEVQRSIEEHEK-----------QLAFKESKISSMRTLIE 208
           L K+ I+E   +I+  + K+  +Q+ I+ + K            +A K++K   +    +
Sbjct: 171 LNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAK 230

Query: 209 EYE-----------EVLKDKERPYDEVKK---SLILCETKLESEKKELELTQ-------- 246
             +            ++ D E P   + K   +    ++K+E  +K +++ +        
Sbjct: 231 TIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTC 290

Query: 247 -SSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKREL 305
              I E   +    ++KL+ LQ  +   +  ++ LE+ +D   +Q KK           L
Sbjct: 291 TQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKK-----------L 339

Query: 306 NEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESIST-----EKTIAECSKE 360
            E+   I    Q   +   + K V+ +I+E   EF    EE ++      +K +   S+ 
Sbjct: 340 LELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEE-LAKLQDELDKIVKTKSEL 398

Query: 361 VELK 364
           V+ K
Sbjct: 399 VKEK 402

Length = 562

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 32/190 (16%), Positives = 83/190 (43%), Gaps = 18/190 (9%)

Query: 155 QKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVL 214
           Q+ ++ L+ LI +    IE   K + E++  ++  ++   FK   +  ++ L+E  EE+L
Sbjct: 281 QELIEQLEELIDKYESHIE---KALEELESILDTEKENSEFKL-DVEELKALLEALEEIL 336

Query: 215 KD--------KERPYDEVK-KSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLEL 265
           +          + P   ++ +S+      +      +        E       E+ K   
Sbjct: 337 EKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKKEKNKA-- 394

Query: 266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKE 325
              + +L  + V  L++++D+ +K++K     +   ++E+ ++   I+ L ++    +K+
Sbjct: 395 ---KKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQ 451

Query: 326 LKFVQQSIKE 335
           L  ++ +  E
Sbjct: 452 LTNIEPTADE 461

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	747
PF07899	290	Frigida: Frigida-like protein; InterPro: IPR012474	100.0
KOG0996	1293	consensus Structural maintenance of chromosome pro	99.84
PRK03918	880	chromosome segregation protein; Provisional	99.52
PRK02224	880	chromosome segregation protein; Provisional	99.46
PRK01156	895	chromosome segregation protein; Provisional	99.43
PRK02224	880	chromosome segregation protein; Provisional	99.36
PRK03918	880	chromosome segregation protein; Provisional	99.33
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.2
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.16
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.11
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.11
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.11
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.09
KOG0933	1174	consensus Structural maintenance of chromosome pro	99.04
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.04
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.02
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.01
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.0
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.92
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.83
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.82
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.79
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.78
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.74
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.62
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.58
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.48
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.46
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.45
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.35
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.35
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	98.35
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.19
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.17
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.15
PRK04778	569	septation ring formation regulator EzrA; Provision	98.14
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.1
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.09
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.09
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.96
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.9
PHA02562	562	46 endonuclease subunit; Provisional	97.89
PRK04863	1486	mukB cell division protein MukB; Provisional	97.78
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.77
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.75
PHA02562	562	46 endonuclease subunit; Provisional	97.73
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.66
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.65
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.65
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.65
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.64
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.61
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.6
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.59
PRK04778	569	septation ring formation regulator EzrA; Provision	97.53
PRK11637	428	AmiB activator; Provisional	97.5
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.44
PRK11637	428	AmiB activator; Provisional	97.34
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.32
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.29
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.28
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.28
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.26
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.16
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.15
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.11
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.09
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.97
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.96
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.95
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.86
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.6
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.59
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.59
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	96.54
PRK04863	1486	mukB cell division protein MukB; Provisional	96.54
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.46
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.41
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.4
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.4
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	96.38
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.25
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.18
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.1
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.08
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.08
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.06
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.05
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.03
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.01
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	95.91
PRK09039	343	hypothetical protein; Validated	95.91
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.72
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.69
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.64
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.48
COG4372	499	Uncharacterized protein conserved in bacteria with	95.33
KOG1003	205	consensus Actin filament-coating protein tropomyos	95.18
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	95.03
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	94.99
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	94.86
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	94.82
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.61
PRK09039	343	hypothetical protein; Validated	94.55
COG5185	622	HEC1 Protein involved in chromosome segregation, i	94.51
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.36
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	94.35
KOG4673	961	consensus Transcription factor TMF, TATA element m	94.08
KOG4673	961	consensus Transcription factor TMF, TATA element m	94.01
KOG0979	1072	consensus Structural maintenance of chromosome pro	93.92
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.7
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	93.55
COG4477	570	EzrA Negative regulator of septation ring formatio	93.46
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	93.38
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.34
KOG1003	205	consensus Actin filament-coating protein tropomyos	93.29
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	93.16
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	93.13
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	93.1
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	93.01
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	92.95
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	92.86
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	92.6
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	92.36
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	92.33
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.27
PF10186	302	Atg14: UV radiation resistance protein and autopha	91.97
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	91.78
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	91.62
PRK12704	520	phosphodiesterase; Provisional	91.6
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.05
COG4372	499	Uncharacterized protein conserved in bacteria with	90.99
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	90.94
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	90.53
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	90.35
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	90.34
COG2433	652	Uncharacterized conserved protein [Function unknow	90.06
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	90.0
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.92
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.89
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.52
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	89.38
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	89.22
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	88.86
COG2433	652	Uncharacterized conserved protein [Function unknow	88.75
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	88.45
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	88.35
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	88.33
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	87.99
PRK10869	553	recombination and repair protein; Provisional	87.41
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	87.19
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	86.95
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	86.15
PF10186	302	Atg14: UV radiation resistance protein and autopha	85.75
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	85.68
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	85.62
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	85.04
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	84.87
COG4026	290	Uncharacterized protein containing TOPRIM domain,	84.19
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	82.62
PF14662	193	CCDC155: Coiled-coil region of CCDC155	82.3
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	81.56
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	81.13
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	80.99
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	80.29
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	80.21

>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT)

Probab=100.00  E-value=1.1e-62  Score=521.49  Aligned_cols=226  Identities=34%  Similarity=0.497  Sum_probs=211.1

Q ss_pred             cccCcccccCChHHHHHHHHHhhchhhhhhhhHHHHHhhCCCchhHHHHHhhccCCCCCCCCCcccchhHhHhhHHHHHh
Q 004516          450 KTEDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSREGDLEFDVSIIRRSCILLLE  529 (747)
Q Consensus       450 ~~l~~~c~~Md~~gL~~~~~~~~~~~~~lr~e~~~AL~~a~DPaklVLdai~gf~~~~~~~g~~~~~~~~~r~aCilLLe  529 (747)
                      .+|+++|.+|||+||++|++.|++++.++|+|+|+||++|||||+||||||+|||+++.+. ++++++.++||+||+|||
T Consensus        13 ~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~-~~~~~~~~~r~~cilLLE   91 (290)
T PF07899_consen   13 PELKSLCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKN-KKDSKLVDVRRACILLLE   91 (290)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCcccc-ccCcchhhHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999765 566788999999999999


Q ss_pred             hchhcCCCCChHHHHHHHHHHHHHHHhh-hhhhcchHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhcccccHHHHhhh
Q 004516          530 QLSTVAPEINAQVRDEAMKVAGEWKKKM-RVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLRIVAQHRQTPKLRQTL  608 (747)
Q Consensus       530 ~L~~~~p~i~~~vke~A~~lA~~WK~ki-~~~~~~~lea~gFL~lla~fgl~s~fd~del~~L~~~v~~~~~a~~L~~~L  608 (747)
                      +|++++|.++|+||++|+++|.+||++| +.++.++++||||||||++|||+++||.|+|++||..|++|+|+|+||++|
T Consensus        92 ~L~~~~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~L~~sL  171 (290)
T PF07899_consen   92 QLMRISPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPELCRSL  171 (290)
T ss_pred             HHhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHHHHHHc
Confidence            9999999999999999999999999999 677889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcchHHHHHhhcCCccceeeee--cc-CCCCCCchhhhhhccccC---CCCCCCCCCccccccCCccchH
Q 004516          609 GFADKEPGLQCSTTAEGRSAPSMLVG--TS-APTNQPDSSLMNLPQYSG---MDPSNSTSSPVSQFSGAQPQLE  676 (747)
Q Consensus       609 gl~~k~~d~I~~LI~~g~~i~Av~~~--~~-~~k~~p~~ll~~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~  676 (747)
                      ||++||||||++||++||||+||+|+  || +|+|||+|||++||+++.   .++.+.+.+|.++..+..+++-
T Consensus       172 gl~~k~~d~V~~LI~~g~~ieAv~fi~~f~L~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~~a~~ea~~kel~  245 (290)
T PF07899_consen  172 GLSDKMPDIVEKLIKKGKQIEAVRFIYAFGLVDKFPPVPLLKSYLEDSKKAAKRIRKKGNSSEAQNEANEKELA  245 (290)
T ss_pred             CchhhhHHHHHHHHHCCCccchHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            99999999999999999999999996  68 999999999999999974   4455666666788888777764

This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=2.4e-17  Score=193.75  Aligned_cols=347  Identities=21%  Similarity=0.278  Sum_probs=284.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHhHH
Q 004516          248 SIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELK  327 (747)
Q Consensus       248 ~i~e~~~ele~k~~~l~~lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek~Le  327 (747)
                      .+......++...-   .+++.++++.++.++++++++...+...+..+..+.........+.++..+.+.++..++.|.
T Consensus       388 ~~k~~~~~~e~~~v---k~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~  464 (1293)
T KOG0996|consen  388 SLKKKFQDLEREDV---KREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD  464 (1293)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444   367889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHhhHHHhhhhHhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004516          328 FVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRL  407 (747)
Q Consensus       328 ~~~~~L~e~~kEle~k~~ele~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~  407 (747)
                      .+..+|..++..+.   .++..+++++.||.++++....+++.+.++|+.+....+...+.++.++..+......+.+..
T Consensus       465 e~~~~l~~~t~~~~---~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~  541 (1293)
T KOG0996|consen  465 EILDSLKQETEGIR---EEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKK  541 (1293)
T ss_pred             HHHHHHhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999   677788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHhhhhhhhhHhhhhhhhhhhhhhhhcccCcccccCChHHHHHHHHHhhchhhhhhhhHHHHHh
Q 004516          408 QDLEIKEREFEKRVKEFELREKEFGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIK  487 (747)
Q Consensus       408 keLe~k~k~le~~~kE~el~E~~i~~~~~~~~~~~~~~~~~~~~l~~~c~~Md~~gL~~~~~~~~~~~~~lr~e~~~AL~  487 (747)
                      ..+......+.+...++...++.++...+.....                       ..-++.++++    -.|+..++.
T Consensus       542 ~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~-----------------------~~~~~~~rqr----veE~ks~~~  594 (1293)
T KOG0996|consen  542 TELDDLKEELPSLKQELKEKEKELPKLRKEERNL-----------------------KSQLNKLRQR----VEEAKSSLS  594 (1293)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHH-----------------------HHHHHHHHHH----HHHHHHHHH
Confidence            9999888888887777776666665555443222                       2334444443    357888899


Q ss_pred             hCCCchhHHHHH---------hhccCCCCCCCCC--cccchhHhHhhHHHHHhhchhcCCCCChHHHHHHHHHHHHHHHh
Q 004516          488 SARDPALLVLHA---------ISGFYPPHSREGD--LEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKK  556 (747)
Q Consensus       488 ~a~DPaklVLda---------i~gf~~~~~~~g~--~~~~~~~~r~aCilLLe~L~~~~p~i~~~vke~A~~lA~~WK~k  556 (747)
                      .+..-++ ||+|         |-|||++.+..|.  ..|| ++++++|.. |+.+++.+...       | +.|+.+..+
T Consensus       595 ~~~s~~k-Vl~al~r~kesG~i~Gf~GRLGDLg~Id~kYD-vAIsTac~~-LdyiVVdt~e~-------a-q~cI~fl~~  663 (1293)
T KOG0996|consen  595 SSRSRNK-VLDALMRLKESGRIPGFYGRLGDLGAIDEKYD-VAISTACAR-LDYIVVDTIET-------A-QECINFLKK  663 (1293)
T ss_pred             hhhhhhH-HHHHHHHHHHcCCCCccccccccccccchHHH-HHHHHhccc-cceEEeccHHH-------H-HHHHHHHHH
Confidence            9999999 9999         5589999988876  4677 888999999 88887766554       7 889999998


Q ss_pred             hhhhhcchHHHHHHHH--HHh--hhCCCCCCChhHHHHHHHHhhc--ccccHHHHhhhCCCCCcchHHHHHhhcCCccce
Q 004516          557 MRVAVENSLEVLGFLH--LLA--AYRLAPAFDGEELESLLRIVAQ--HRQTPKLRQTLGFADKEPGLQCSTTAEGRSAPS  630 (747)
Q Consensus       557 i~~~~~~~lea~gFL~--lla--~fgl~s~fd~del~~L~~~v~~--~~~a~~L~~~Lgl~~k~~d~I~~LI~~g~~i~A  630 (747)
                            +.+++..|+.  .++  .+.+++.-+|+.+++||+.|..  .++.|+||-+|+-+         |+..+-. .|
T Consensus       664 ------~nLgraTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~d~~~r~aFYfaLrdt---------LV~d~Le-QA  727 (1293)
T KOG0996|consen  664 ------NNLGRATFIILDKIKDHQKKLAPITTPENVPRLFDLVKCKDEKFRPAFYFALRDT---------LVADNLE-QA  727 (1293)
T ss_pred             ------cCCCceeEEehHhhhhhhhccCCCCCCCCcchHhhhhccCCHHHHHHHHHHHhhh---------hhhcCHH-HH
Confidence                  7888777755  677  8899999999999999999998  56899999998854         3322211 37


Q ss_pred             eeeecc-CCCCCCchhhhhhccccC
Q 004516          631 MLVGTS-APTNQPDSSLMNLPQYSG  654 (747)
Q Consensus       631 v~~~~~-~~k~~p~~ll~~y~~~~~  654 (747)
                      -++||| .-+|.-|+|=-+.|..|+
T Consensus       728 tRiaygk~rr~RVvTL~G~lIe~SG  752 (1293)
T KOG0996|consen  728 TRIAYGKDRRWRVVTLDGSLIEKSG  752 (1293)
T ss_pred             HHHhhcCCCceEEEEecceeecccc
Confidence            788999 555887777677777774

>PRK03918 chromosome segregation protein; Provisional

Probab=99.52  E-value=7.5e-10  Score=135.56  Aligned_cols=52  Identities=23%  Similarity=0.335  Sum_probs=26.5

Q ss_pred             HHHHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhH
Q 004516          173 ELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLE  236 (747)
Q Consensus       173 ~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele  236 (747)
                      ......||.|+.+|...+.            ...+.++..++...+.++.....++.....++.
T Consensus       432 ~~~~~~Cp~c~~~L~~~~~------------~el~~~~~~ei~~l~~~~~~l~~~~~~l~~~~~  483 (880)
T PRK03918        432 KKAKGKCPVCGRELTEEHR------------KELLEEYTAELKRIEKELKEIEEKERKLRKELR  483 (880)
T ss_pred             HhcCCCCCCCCCcCCchhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334456667777666554            333445555555555555555444444444333

>PRK02224 chromosome segregation protein; Provisional

Probab=99.46  E-value=2.2e-09  Score=131.57  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHhhHHHHHHhHHHHH
Q 004516          156 KELQLLKNLIKECCDEIEL--REKKVGEVQRSIEEHE  190 (747)
Q Consensus       156 ~~L~~~~~~~ee~~~El~~--kekel~~~~k~ie~~~  190 (747)
                      ..+......+..+..+++.  .+..|+.|++.+....
T Consensus       429 ~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~  465 (880)
T PRK02224        429 AELEATLRTARERVEEAEALLEAGKCPECGQPVEGSP  465 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcc
Confidence            3444444444445555543  4567888887766544

>PRK01156 chromosome segregation protein; Provisional

Probab=99.43  E-value=1.2e-08  Score=125.57  Aligned_cols=95  Identities=16%  Similarity=0.189  Sum_probs=51.7

Q ss_pred             HHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHH----HHHH
Q 004516          175 REKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQ----SSIK  250 (747)
Q Consensus       175 kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~----~~i~  250 (747)
                      ....||.|.+++...+.            ...+..+..++...++++......+....++++.....++...    ..+.
T Consensus       451 ~~~~Cp~c~~~~~~e~~------------~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~l~  518 (895)
T PRK01156        451 GQSVCPVCGTTLGEEKS------------NHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSI  518 (895)
T ss_pred             cCCCCCCCCCcCChhhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence            34457777777775544            4557778888888877777777777666666655544444321    1222


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHH
Q 004516          251 ELWMKFHSEQEKLELLQGRVRLHENEVESLE  281 (747)
Q Consensus       251 e~~~ele~k~~~l~~lee~~kele~K~k~~E  281 (747)
                      +...++++-..+++.+...++.++.+.++++
T Consensus       519 ~~~~~~~~l~~~l~~~~~~l~~le~~~~~~~  549 (895)
T PRK01156        519 NEYNKIESARADLEDIKIKINELKDKHDKYE  549 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222223333344444555555555444

>PRK02224 chromosome segregation protein; Provisional

Probab=99.36  E-value=2.2e-07  Score=114.18  Aligned_cols=21  Identities=24%  Similarity=0.183  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhc
Q 004516           12 LRVAESKKEALRRSFDIARSQ   32 (747)
Q Consensus        12 l~~~e~~~~~lrk~l~~Le~~   32 (747)
                      |..++.++..++.++..+...
T Consensus       208 l~~~~~~l~el~~~i~~~~~~  228 (880)
T PRK02224        208 LNGLESELAELDEEIERYEEQ  228 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444433

>PRK03918 chromosome segregation protein; Provisional

Probab=99.33  E-value=7.5e-07  Score=109.41  Aligned_cols=17  Identities=12%  Similarity=0.171  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 004516           13 RVAESKKEALRRSFDIA   29 (747)
Q Consensus        13 ~~~e~~~~~lrk~l~~L   29 (747)
                      +.++.+...+...+..+
T Consensus       172 ~~~~~~~~~l~~~l~~l  188 (880)
T PRK03918        172 KEIKRRIERLEKFIKRT  188 (880)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444444333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.20  E-value=6.9e-06  Score=105.17  Aligned_cols=105  Identities=23%  Similarity=0.296  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004516          204 RTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQE  283 (747)
Q Consensus       204 e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e~~~ele~k~~~l~~lee~~kele~K~k~~Eke  283 (747)
                      +...+++..+++.-.......+...+.....+..++.|+-.+..++++....+...+++++.++.+++++......-...
T Consensus      1040 Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~ 1119 (1930)
T KOG0161|consen 1040 EKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERAS 1119 (1930)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444333333333444444444445555555555554555544444444444444444444444444444334


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHH
Q 004516          284 LDSMRKQQKKYFDDVELKKRELNEI  308 (747)
Q Consensus       284 L~~~~k~l~~~~~ele~kek~~e~~  308 (747)
                      .....++......+++..+.+++..
T Consensus      1120 r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1120 RAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444455444444443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.16  E-value=1.7e-05  Score=101.83  Aligned_cols=83  Identities=22%  Similarity=0.307  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHH
Q 004516          162 KNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKE  241 (747)
Q Consensus       162 ~~~~ee~~~El~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~E  241 (747)
                      .....+....+..++-++...+..+++....+...+..+.-....|.+..++|+.-........+....+..+++....+
T Consensus      1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555666666666555555555444444455555555555444444444444444444444444444


Q ss_pred             HHH
Q 004516          242 LEL  244 (747)
Q Consensus       242 l~~  244 (747)
                      |+.
T Consensus      1141 Lee 1143 (1930)
T KOG0161|consen 1141 LEE 1143 (1930)
T ss_pred             HHH
Confidence            433

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.11  E-value=2.8e-06  Score=106.84  Aligned_cols=9  Identities=44%  Similarity=0.220  Sum_probs=5.0

Q ss_pred             HHHHHHHHh
Q 004516          548 KVAGEWKKK  556 (747)
Q Consensus       548 ~lA~~WK~k  556 (747)
                      .-|+.|...
T Consensus       561 ~~~i~~l~~  569 (1164)
T TIGR02169       561 KEAIELLKR  569 (1164)
T ss_pred             HHHHHHHHh
Confidence            455666554

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.11  E-value=4.4e-06  Score=104.90  Aligned_cols=89  Identities=15%  Similarity=0.207  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004516           11 ELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGK   90 (747)
Q Consensus        11 el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~   90 (747)
                      ++..+..+++.++..+..+......   +...+..++..+..+...+......+......+......+..+..++..+..
T Consensus       671 ~~~~l~~e~~~l~~~~~~l~~~l~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  747 (1179)
T TIGR02168       671 SILERRREIEELEEKIEELEEKIAE---LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE  747 (1179)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555544444332   4444444444444444444444443333333333333333333333333333


Q ss_pred             hHHHHHHHHHHH
Q 004516           91 KIEDCNGELACK  102 (747)
Q Consensus        91 eLeElE~ele~~  102 (747)
                      ++..+..++...
T Consensus       748 e~~~~~~~~~~~  759 (1179)
T TIGR02168       748 RIAQLSKELTEL  759 (1179)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR00606 rad50 rad50

Probab=99.11  E-value=1.3e-05  Score=102.49  Aligned_cols=65  Identities=14%  Similarity=0.063  Sum_probs=30.6

Q ss_pred             CCChhHHHHHHHHhhccc-cc-HHHHhhhCCCCCcchHHHHHhhcCCccceee-ee-----cc-CCCCCCchhhh
Q 004516          582 AFDGEELESLLRIVAQHR-QT-PKLRQTLGFADKEPGLQCSTTAEGRSAPSML-VG-----TS-APTNQPDSSLM  647 (747)
Q Consensus       582 ~fd~del~~L~~~v~~~~-~a-~~L~~~Lgl~~k~~d~I~~LI~~g~~i~Av~-~~-----~~-~~k~~p~~ll~  647 (747)
                      .+|++....|...+.... .. ..--.++-++.+-+++|..+... .+++-++ +.     ++ ..+=+|.++++
T Consensus      1235 ~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1308 (1311)
T TIGR00606      1235 NLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRS-EYVEKFYRLKKNEDQCSEIVKCSPSSLGK 1308 (1311)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhc-cccceeeeeeeccccCceeEeeCCccccc
Confidence            456666665554443310 00 00012344667777788777643 3333332 21     22 45556665544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.09  E-value=3.4e-06  Score=106.60  Aligned_cols=227  Identities=19%  Similarity=0.188  Sum_probs=107.7

Q ss_pred             HhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhh
Q 004516          349 STEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELRE  428 (747)
Q Consensus       349 ~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k~k~le~~~kE~el~E  428 (747)
                      ....++.....++...+.+++.....++.+...++.+...+..+...+..++..+.....++......++.........+
T Consensus       387 ~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  466 (1163)
T COG1196         387 ELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELE  466 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555555556666655555565556565555555555555555555555555555555555544444443333


Q ss_pred             hhhhhHhhhhhhhhhhhhhhhcccCcccccCChHHHHHHHHHhhchhhhhhhhHHHHHhhCCCchhHHHHH----hhccC
Q 004516          429 KEFGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHA----ISGFY  504 (747)
Q Consensus       429 ~~i~~~~~~~~~~~~~~~~~~~~l~~~c~~Md~~gL~~~~~~~~~~~~~lr~e~~~AL~~a~DPaklVLda----i~gf~  504 (747)
                      ..+..........                       ...+......+..+......     .++.+-|+.+    +.|+|
T Consensus       467 ~~~~~~~~~~~~~-----------------------~~~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~Gv~  518 (1163)
T COG1196         467 RELAELQEELQRL-----------------------EKELSSLEARLDRLEAEQRA-----SQGVRAVLEALESGLPGVY  518 (1163)
T ss_pred             HHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHhccCCCcc
Confidence            3333222221111                       11111111111111111111     3333334444    44555


Q ss_pred             CCCCCCCC--cccchhHhHhhHHHHHhhchhcCCCCChHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHH--HHhhhCCC
Q 004516          505 PPHSREGD--LEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLH--LLAAYRLA  580 (747)
Q Consensus       505 ~~~~~~g~--~~~~~~~~r~aCilLLe~L~~~~p~i~~~vke~A~~lA~~WK~ki~~~~~~~lea~gFL~--lla~fgl~  580 (747)
                      |+-+..+.  .+|. .++..||+-=|..+++.++.+       |...-.-||.+       ..+...|+-  .+..+...
T Consensus       519 G~v~~li~v~~~y~-~Aie~alG~~l~~vVV~~~~~-------a~~~i~~lk~~-------~~gr~tflpl~~i~~~~~~  583 (1163)
T COG1196         519 GPVAELIKVKEKYE-TALEAALGNRLQAVVVENEEV-------AKKAIEFLKEN-------KAGRATFLPLDRIKPLRSL  583 (1163)
T ss_pred             chHHHhcCcChHHH-HHHHHHcccccCCeeeCChHH-------HHHHHHHHhhc-------CCCccccCchhhhcccccc
Confidence            55443322  2333 555666665566666666665       64444445543       455556633  33333332


Q ss_pred             CCC-ChhHHHHHHHHhhc-ccccHHHHhhhCCCCCcchHH
Q 004516          581 PAF-DGEELESLLRIVAQ-HRQTPKLRQTLGFADKEPGLQ  618 (747)
Q Consensus       581 s~f-d~del~~L~~~v~~-~~~a~~L~~~Lgl~~k~~d~I  618 (747)
                      +.. .++.+.-.++.|.- +++.|.+...||-+--++++-
T Consensus       584 ~~~~~~g~~~~a~dli~~d~~~~~~~~~~l~~t~Iv~~l~  623 (1163)
T COG1196         584 KSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLE  623 (1163)
T ss_pred             ccccccchhHHHHHHhcCCHHHHHHHHHHhCCeEEecCHH
Confidence            222 45555555555554 345677777777665555553

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.04  E-value=0.00018  Score=85.74  Aligned_cols=47  Identities=23%  Similarity=0.460  Sum_probs=36.4

Q ss_pred             HHHHHHHHhhhhh--hcchHHHHHHHHHHhhhCCCCCCChhHHHHHHHH
Q 004516          548 KVAGEWKKKMRVA--VENSLEVLGFLHLLAAYRLAPAFDGEELESLLRI  594 (747)
Q Consensus       548 ~lA~~WK~ki~~~--~~~~lea~gFL~lla~fgl~s~fd~del~~L~~~  594 (747)
                      ++..-||..+..=  |.-||-|+.+++-+-.|-.+|.|=-|||---++.
T Consensus      1071 ~~G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDL 1119 (1174)
T KOG0933|consen 1071 KFGGIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDL 1119 (1174)
T ss_pred             EeCccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcc
Confidence            3455799999753  4458999999999999999999988877644443

>TIGR00606 rad50 rad50

Probab=99.04  E-value=4.3e-05  Score=97.94  Aligned_cols=48  Identities=8%  Similarity=0.091  Sum_probs=19.2

Q ss_pred             HHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516          366 NQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIK  413 (747)
Q Consensus       366 ~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k  413 (747)
                      ..+......++.++..+..+...+..+...+.............|...
T Consensus       977 ~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606       977 TELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333334444444444444444444444433444444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.02  E-value=0.00018  Score=86.32  Aligned_cols=24  Identities=21%  Similarity=0.447  Sum_probs=11.5

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHh
Q 004516          192 QLAFKESKISSMRTLIEEYEEVLK  215 (747)
Q Consensus       192 el~~ke~~l~~~e~~i~e~~~EL~  215 (747)
                      .+..|...|..++..+.....||.
T Consensus       232 ~ie~Kd~ki~~lEr~l~~le~Ei~  255 (775)
T PF10174_consen  232 VIEEKDTKIASLERMLRDLEDEIY  255 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555444444444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.01  E-value=1.6e-05  Score=100.24  Aligned_cols=30  Identities=10%  Similarity=-0.001  Sum_probs=12.1

Q ss_pred             HHhhHHHhhHHhHHHHHHHHHHHHHHHHHH
Q 004516          373 HESNLFQTRTIGYLKELKEKEKHFDSLKKG  402 (747)
Q Consensus       373 ~ELe~~~~~~e~~~keleele~~leslE~~  402 (747)
                      .+++.....+..+...++.+.....++...
T Consensus       979 ~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~ 1008 (1164)
T TIGR02169       979 QEYEEVLKRLDELKEKRAKLEEERKAILER 1008 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444443333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.00  E-value=0.00012  Score=87.97  Aligned_cols=75  Identities=17%  Similarity=0.217  Sum_probs=53.9

Q ss_pred             hhhhHhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516          345 EESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEK  419 (747)
Q Consensus       345 ~ele~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k~k~le~  419 (747)
                      .+++..++++..+..+++..++.+......|...+.....+.........++..++..++.+.+.......++..
T Consensus       465 Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k  539 (775)
T PF10174_consen  465 EELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK  539 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            555666677777777777777777777777777777666666666666667778888888887777777777655

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.92  E-value=0.00035  Score=84.55  Aligned_cols=150  Identities=14%  Similarity=0.249  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHhhhhh
Q 004516           67 KIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQG  146 (747)
Q Consensus        67 k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~~~~~  146 (747)
                      .+..+-+...++...+..+..++..+..+.+.++.....+..++..+...++.+..+..+-.....+++..++.+...+.
T Consensus       272 ~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r  351 (1074)
T KOG0250|consen  272 AWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR  351 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            44455666666666666666666666666666666666666666555555555555555555555555555555543333


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHhhcccchHHHH
Q 004516          147 WINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQL-AFKESKISSMRTLIEEYEEVLKDKERPYDEVK  225 (747)
Q Consensus       147 ~l~~~~~~~~~L~~~~~~~ee~~~El~~kekel~~~~k~ie~~~~el-~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~  225 (747)
                      +.          ...+.++..++..+..+++.++.+.+.|...++++ ....+++.-+++.+..+..+.+.-+..+..+.
T Consensus       352 e~----------~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~  421 (1074)
T KOG0250|consen  352 EV----------NDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLR  421 (1074)
T ss_pred             HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22          45555566666666666666666666666666655 44444444444444444444444443333333


Q ss_pred             H
Q 004516          226 K  226 (747)
Q Consensus       226 ~  226 (747)
                      .
T Consensus       422 ~  422 (1074)
T KOG0250|consen  422 E  422 (1074)
T ss_pred             H
Confidence            3

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.83  E-value=0.0012  Score=84.13  Aligned_cols=91  Identities=19%  Similarity=0.169  Sum_probs=68.4

Q ss_pred             HHHHHHhhHHHhhhhHhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516          334 KECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIK  413 (747)
Q Consensus       334 ~e~~kEle~k~~ele~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k  413 (747)
                      ..-...++..+-+++.++..|-...++++.+.+.|..+..+++........+..+++..-+.+...+..+......+...
T Consensus       394 ~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~  473 (1822)
T KOG4674|consen  394 SKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDL  473 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666677777788888899999999999999999999888888888888887777777777777777766666


Q ss_pred             HHHHHHhhhhH
Q 004516          414 EREFEKRVKEF  424 (747)
Q Consensus       414 ~k~le~~~kE~  424 (747)
                      .++.......+
T Consensus       474 ~renk~l~~~~  484 (1822)
T KOG4674|consen  474 ERENKLLEQQI  484 (1822)
T ss_pred             HHHHHHHHHHH
Confidence            66555444444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.82  E-value=0.00015  Score=91.87  Aligned_cols=89  Identities=25%  Similarity=0.329  Sum_probs=40.1

Q ss_pred             hhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516           39 FTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKR  118 (747)
Q Consensus        39 l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~  118 (747)
                      +...+..+..++..+...+.++...+.....+++....++.....++.++...+..++.++..+...+..+..++..++.
T Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  765 (1163)
T COG1196         686 LEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEE  765 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444333333344444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHH
Q 004516          119 ELQLKENEL  127 (747)
Q Consensus       119 ELe~keeeL  127 (747)
                      .+......+
T Consensus       766 ~l~~~~~~~  774 (1163)
T COG1196         766 ELESLEEAL  774 (1163)
T ss_pred             HHHHHHHHH
Confidence            444443333

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.79  E-value=0.0021  Score=82.01  Aligned_cols=224  Identities=16%  Similarity=0.185  Sum_probs=97.4

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHH
Q 004516          192 QLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQS-----SIKELWMKFHSEQEKLELL  266 (747)
Q Consensus       192 el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~-----~i~e~~~ele~k~~~l~~l  266 (747)
                      ++..-...+..+...+..+...+......+....-.+..++++++........+..     ...-....|...+.++..+
T Consensus       838 ~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l  917 (1822)
T KOG4674|consen  838 QLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDL  917 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHH
Confidence            44455556666666666777777776666666666666666666554443322221     1111112233334443333


Q ss_pred             HHHHHHhHHHHHHHHH-------HHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHhhcCchhhHHhHHHHHHhHHH
Q 004516          267 QGRVRLHENEVESLEQ-------ELDSMRKQQKKYFDDVELK----KRELNEIGKYIEELNQDPASKDKELKFVQQSIKE  335 (747)
Q Consensus       267 ee~~kele~K~k~~Ek-------eL~~~~k~l~~~~~ele~k----ek~~e~~~~e~e~~~kELe~kek~Le~~~~~L~e  335 (747)
                      .++++.-.+....+..       .|..++..+.+...+++..    ..++..+...+-.+..++.....++...-     
T Consensus       918 ~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~-----  992 (1822)
T KOG4674|consen  918 KEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELST-----  992 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence            4444444444444433       3333333333333222211    11111111112222222222222221111     


Q ss_pred             HHHHhhHHHhhhhHhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516          336 CSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKER  415 (747)
Q Consensus       336 ~~kEle~k~~ele~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k~k  415 (747)
                           ..+..++..+++++.....++.........+-.-+..++..+......+...+..+++--.....-...|.....
T Consensus       993 -----k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~e 1067 (1822)
T KOG4674|consen  993 -----KGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLRE 1067 (1822)
T ss_pred             -----cchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 112223333344444444445555555555555555555555555445555555555544444555555555555


Q ss_pred             HHHHhhhhHH
Q 004516          416 EFEKRVKEFE  425 (747)
Q Consensus       416 ~le~~~kE~e  425 (747)
                      .+.....++.
T Consensus      1068 e~~~~~~e~~ 1077 (1822)
T KOG4674|consen 1068 EFAKCNDELL 1077 (1822)
T ss_pred             HHHHHHHHHH
Confidence            5555444444

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.78  E-value=0.0012  Score=81.82  Aligned_cols=16  Identities=13%  Similarity=0.146  Sum_probs=12.5

Q ss_pred             HHhhHHHHHHhHHHHH
Q 004516          175 REKKVGEVQRSIEEHE  190 (747)
Q Consensus       175 kekel~~~~k~ie~~~  190 (747)
                      ....||.|.+++...+
T Consensus       456 ~~~~CPvCg~~l~~~~  471 (908)
T COG0419         456 AGEKCPVCGQELPEEH  471 (908)
T ss_pred             CCCCCCCCCCCCCcHH
Confidence            3457999998888777

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.74  E-value=0.0021  Score=78.20  Aligned_cols=58  Identities=14%  Similarity=0.196  Sum_probs=29.5

Q ss_pred             HhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516          356 ECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIK  413 (747)
Q Consensus       356 ~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k  413 (747)
                      ....++++-..+++....++......+..--+.+...+..+..++..++....+++.+
T Consensus       904 ~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L  961 (1293)
T KOG0996|consen  904 AQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDL  961 (1293)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555556666665555555555554444444444444444444444444433333

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.62  E-value=0.00054  Score=81.93  Aligned_cols=75  Identities=19%  Similarity=0.205  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHH
Q 004516          166 KECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKK  240 (747)
Q Consensus       166 ee~~~El~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~  240 (747)
                      ++...+++...-++++..+++......+...+..+++....++.....+..-+.........|..+.+.+.....
T Consensus       811 ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt  885 (1174)
T KOG0933|consen  811 EKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDT  885 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhH
Confidence            333444444455555555666655555555555555555555555555555555555555555444444433333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.58  E-value=0.004  Score=72.64  Aligned_cols=24  Identities=33%  Similarity=0.516  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHhhcccchHHHHHHH
Q 004516          205 TLIEEYEEVLKDKERPYDEVKKSL  228 (747)
Q Consensus       205 ~~i~e~~~EL~~KEkel~~~~~~i  228 (747)
                      ..+..|..+|+.-++++..+...+
T Consensus       211 ~~~~~~~~~leeae~~l~~L~~e~  234 (522)
T PF05701_consen  211 QDAEEWEKELEEAEEELEELKEEL  234 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555554444

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.48  E-value=0.0078  Score=72.33  Aligned_cols=201  Identities=15%  Similarity=0.149  Sum_probs=102.1

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHH
Q 004516          192 QLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFH------SEQEKLEL  265 (747)
Q Consensus       192 el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e~~~ele------~k~~~l~~  265 (747)
                      .|....++...++..-..+..+++.-+..+.+..+....++........|.+.+...+..-..-..      ....+++.
T Consensus       395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls  474 (1195)
T KOG4643|consen  395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLS  474 (1195)
T ss_pred             hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence            566666666666766666777777777777777666666665555555565555533222111111      11111111


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHhHHHHHHhHHHHHHHhhHHHh
Q 004516          266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKE  345 (747)
Q Consensus       266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek~Le~~~~~L~e~~kEle~k~~  345 (747)
                      +..++.          .+.....-+++.+-+-|..-..++......+.++.+.+.....+++..+..+..--..+..-.+
T Consensus       475 ~~~Q~~----------~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~  544 (1195)
T KOG4643|consen  475 LQDQLE----------AETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEE  544 (1195)
T ss_pred             HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            111111          1122222223333333333444444444444444455555555554433222222222222222


Q ss_pred             hhhHhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHH
Q 004516          346 ESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGL  403 (747)
Q Consensus       346 ele~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~l  403 (747)
                      +=....++|.....- ..+...|+....+++............+..+..|.+.++..+
T Consensus       545 ENa~LlkqI~~Lk~t-~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~  601 (1195)
T KOG4643|consen  545 ENAHLLKQIQSLKTT-SQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEI  601 (1195)
T ss_pred             HHHHHHHHHHHHHHH-hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222334444443333 456778888888888888888777777887888887777765

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.46  E-value=0.00027  Score=74.20  Aligned_cols=63  Identities=17%  Similarity=0.366  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHhHHHHHHhHHHHHHHh
Q 004516          278 ESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEF  340 (747)
Q Consensus       278 k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek~Le~~~~~L~e~~kEl  340 (747)
                      ..++..|.....++.......+..++.+..++..+..+..+|.....++..+...|...+.+|
T Consensus       172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el  234 (237)
T PF00261_consen  172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL  234 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333444444444444444444444444444444444444444444444444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.45  E-value=0.012  Score=71.88  Aligned_cols=73  Identities=16%  Similarity=0.140  Sum_probs=33.5

Q ss_pred             HHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhhhh
Q 004516          361 VELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKEFGS  433 (747)
Q Consensus       361 le~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k~k~le~~~kE~el~E~~i~~  433 (747)
                      ++.+..++....++++......+....+++.++.....+..........|......+++...++..+++.+.+
T Consensus       736 ~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s  808 (1074)
T KOG0250|consen  736 LEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRS  808 (1074)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            3334444444444444444444444444444444444444444444444444444455544444444444333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.35  E-value=0.014  Score=68.21  Aligned_cols=15  Identities=20%  Similarity=0.297  Sum_probs=6.5

Q ss_pred             hhhhHHHHHHhHhhh
Q 004516          130 LSGSLNLKKEELCSV  144 (747)
Q Consensus       130 ~~~eLe~~eeeL~~~  144 (747)
                      |+.+|+..++++...
T Consensus       114 ~k~ele~~~~q~~~~  128 (522)
T PF05701_consen  114 WKAELESAREQYASA  128 (522)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444433

Several sequences in this family are described as being myosin heavy chain-like.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.35  E-value=0.013  Score=67.69  Aligned_cols=96  Identities=14%  Similarity=0.209  Sum_probs=60.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516            8 ISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVL   87 (747)
Q Consensus         8 l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eiee   87 (747)
                      +...|..+.++.+.|.+....|+.+..+   +..++..++..+.........+..+........+....+.+.+..+..+
T Consensus       141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~---l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e  217 (546)
T PF07888_consen  141 LQNQLEECQKEKEELLKENEQLEEEVEQ---LREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE  217 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677788888888888888888888444   7777777777777777766666666544444444445555555555555


Q ss_pred             HHhhHHHHHHHHHHHHHHH
Q 004516           88 VGKKIEDCNGELACKKKEL  106 (747)
Q Consensus        88 le~eLeElE~ele~~k~eL  106 (747)
                      ....|.+++.++..+....
T Consensus       218 ~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  218 ARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555555555444444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=98.35  E-value=0.014  Score=67.92  Aligned_cols=153  Identities=22%  Similarity=0.260  Sum_probs=88.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHhHHHHHHhHHHHHHHhhHHHhhhhHh
Q 004516          271 RLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESIST  350 (747)
Q Consensus       271 kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek~Le~~~~~L~e~~kEle~k~~ele~~  350 (747)
                      ..+..+.+.+-.+..++...+.+....+...++.-+..-+.++.+.+.-.....+|++++..+..+-.+++++...-+.-
T Consensus       495 nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen  574 (786)
T PF05483_consen  495 NKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEEN  574 (786)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            33333433444445555555666666666666666677677777666666667778888888888888888766654433


Q ss_pred             HHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHh
Q 004516          351 EKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFEL  426 (747)
Q Consensus       351 ~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~k~k~le~~~kE~el  426 (747)
                      .+.   ...++..+.+++.-....+..+.+.++.-.+.++.++..=..+.+.+..-.+.+...+-....+..|++.
T Consensus       575 ~r~---~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~  647 (786)
T PF05483_consen  575 ARS---IECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELEN  647 (786)
T ss_pred             hHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222   2344455555555555555556666666556666555555555555555555444444444444444433

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.19  E-value=0.027  Score=65.11  Aligned_cols=12  Identities=8%  Similarity=0.263  Sum_probs=5.6

Q ss_pred             HhhchhcCCCCC
Q 004516          528 LEQLSTVAPEIN  539 (747)
Q Consensus       528 Le~L~~~~p~i~  539 (747)
                      +.+=++++|..+
T Consensus       526 i~qp~p~~~~~~  537 (546)
T PF07888_consen  526 ISQPAPISSQHQ  537 (546)
T ss_pred             eCCCCCCCCCCC
Confidence            444445555433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.17  E-value=0.0039  Score=65.46  Aligned_cols=57  Identities=12%  Similarity=0.226  Sum_probs=30.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 004516          266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASK  322 (747)
Q Consensus       266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~k  322 (747)
                      ++.+++.|..+++..+.........+......+...+..+......+.....+|...
T Consensus       174 ~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~  230 (237)
T PF00261_consen  174 YEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT  230 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555555555555555555555555555544444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.15  E-value=0.046  Score=65.90  Aligned_cols=49  Identities=22%  Similarity=0.301  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004516          202 SMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIK  250 (747)
Q Consensus       202 ~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~  250 (747)
                      ++...|..+..-|......-...+++++..+.+++.+-.+++.....|+
T Consensus       394 wir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~  442 (1200)
T KOG0964|consen  394 WIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSIN  442 (1200)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence            3444455555555554444555555566556666555555555554444

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.14  E-value=0.042  Score=64.97  Aligned_cols=32  Identities=6%  Similarity=-0.154  Sum_probs=14.1

Q ss_pred             HhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 004516          374 ESNLFQTRTIGYLKELKEKEKHFDSLKKGLED  405 (747)
Q Consensus       374 ELe~~~~~~e~~~keleele~~leslE~~le~  405 (747)
                      +++.....+..+......+......++..|..
T Consensus       477 e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy  508 (569)
T PRK04778        477 LLEEATEDVETLEEETEELVENATLTEQLIQY  508 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.10  E-value=0.03  Score=64.31  Aligned_cols=64  Identities=19%  Similarity=0.211  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004516           50 LDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRI  113 (747)
Q Consensus        50 l~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI  113 (747)
                      +..++.....+...+.....-+......-......++.++.++++.+.+++.++.+...++..|
T Consensus       261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I  324 (581)
T KOG0995|consen  261 EESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI  324 (581)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444443444443333333444444444444445555555555555555554444444444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.09  E-value=0.094  Score=67.26  Aligned_cols=25  Identities=12%  Similarity=0.376  Sum_probs=10.9

Q ss_pred             Hhhchh-cCCCCChHHHHHHHHHHHH
Q 004516          528 LEQLST-VAPEINAQVRDEAMKVAGE  552 (747)
Q Consensus       528 Le~L~~-~~p~i~~~vke~A~~lA~~  552 (747)
                      |+.++. +.|..-..+++.+.-++..
T Consensus       968 l~~~~~~~~~~~~~~l~e~~~~~~~~  993 (1201)
T PF12128_consen  968 LQELLDVLIPQQQQALIEQGRNIGND  993 (1201)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            444433 2343333355555544444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.09  E-value=0.095  Score=67.24  Aligned_cols=58  Identities=10%  Similarity=0.130  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccch-hhhhhhHhhHHHHHHHHHHHHHHHhhhHHHH
Q 004516           10 EELRVAESKKEALRRSFDIARSQSNSV-PVFTGQWDDLEEHLDLTKKSLEKQSNDVDVK   67 (747)
Q Consensus        10 ~el~~~e~~~~~lrk~l~~Le~~r~si-~~l~~~l~~le~el~el~~~iee~~~eL~~k   67 (747)
                      ..++.++.+.+.++.++..+.+..+.. ..+......+.+.+..++..+..+..+...+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~y  339 (1201)
T PF12128_consen  281 QEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDY  339 (1201)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444443221 0023333444444444555554444433333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.00  E-value=0.04  Score=59.81  Aligned_cols=130  Identities=18%  Similarity=0.170  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516           10 EELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVG   89 (747)
Q Consensus        10 ~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele   89 (747)
                      +..+-++..=..|...|..+......  ....-+..++.++..++..+.....+......+++....+++.+...++...
T Consensus        18 ekVr~LE~~N~~Le~~i~~~~~~~~~--~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~   95 (312)
T PF00038_consen   18 EKVRFLEQENKRLESEIEELREKKGE--EVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEEL   95 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhcccc--cCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            34566666667777777777776322  1233455666777777777777777776666677777777777777777777


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516           90 KKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEEL  141 (747)
Q Consensus        90 ~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL  141 (747)
                      .....++.++..++..+........++++++..+..++.+.+..-+.....|
T Consensus        96 ~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L  147 (312)
T PF00038_consen   96 AERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEEL  147 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            7777777777777777776666666677777777777766555444333333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.96  E-value=0.12  Score=63.95  Aligned_cols=13  Identities=15%  Similarity=0.069  Sum_probs=7.0

Q ss_pred             ccccCCccccccc
Q 004516          688 STIDYTPHALASD  700 (747)
Q Consensus       688 ~~~~~~~~~~~~~  700 (747)
                      .+|.+++|.++.+
T Consensus      1173 ~eip~~fq~l~~~ 1185 (1317)
T KOG0612|consen 1173 KEIPRIFQILYAN 1185 (1317)
T ss_pred             hhcchhHHHHHhh
Confidence            4455666655543

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.90  E-value=0.11  Score=61.44  Aligned_cols=41  Identities=20%  Similarity=0.094  Sum_probs=19.1

Q ss_pred             HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004516          271 RLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKY  311 (747)
Q Consensus       271 kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e  311 (747)
                      +-+.....++..+....+..+.+.-..++.....++++.++
T Consensus       319 kylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKk  359 (1265)
T KOG0976|consen  319 KYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKK  359 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence            33444444444444444444444444444444444444444

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.89  E-value=0.0047  Score=72.31  Aligned_cols=14  Identities=14%  Similarity=0.069  Sum_probs=11.0

Q ss_pred             HhhHHHHHHhHHHH
Q 004516          176 EKKVGEVQRSIEEH  189 (747)
Q Consensus       176 ekel~~~~k~ie~~  189 (747)
                      ...|+.|.+.++..
T Consensus       284 ~~~Cp~C~~~~~~~  297 (562)
T PHA02562        284 GGVCPTCTQQISEG  297 (562)
T ss_pred             CCCCCCCCCcCCCc
Confidence            44799999988766

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.78  E-value=0.32  Score=63.25  Aligned_cols=17  Identities=6%  Similarity=0.151  Sum_probs=7.6

Q ss_pred             hHHHHHHHhhHHHhhhh
Q 004516          332 SIKECSKEFQWKKEESI  348 (747)
Q Consensus       332 ~L~e~~kEle~k~~ele  348 (747)
                      .+....+++..+..++.
T Consensus       583 ~~r~~~~qL~~~i~~l~  599 (1486)
T PRK04863        583 ALRQQLEQLQARIQRLA  599 (1486)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444544444444

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.77  E-value=5.4e-06  Score=101.38  Aligned_cols=41  Identities=20%  Similarity=0.375  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004516          385 YLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFE  425 (747)
Q Consensus       385 ~~keleele~~leslE~~le~k~keLe~k~k~le~~~kE~e  425 (747)
                      +...+..++.+++......+.....+....+.+.....+++
T Consensus       579 ~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~ele  619 (859)
T PF01576_consen  579 LQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELE  619 (859)
T ss_dssp             -----------------------------------------
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333433333333333333344444444444443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.75  E-value=0.096  Score=56.26  Aligned_cols=51  Identities=14%  Similarity=0.255  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhh
Q 004516           10 EELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSND   63 (747)
Q Consensus        10 ~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~e   63 (747)
                      ..+..++.+...++..+..+...|+.   +..+...+.+.-+.++.+..+....
T Consensus         6 ~~~~E~e~K~~~lk~~~~e~~ekR~E---l~~~~~~~~ekRdeln~kvrE~~e~   56 (294)
T COG1340           6 DKLDELELKRKQLKEEIEELKEKRDE---LRKEASELAEKRDELNAKVRELREK   56 (294)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666777777777777644   4444444444444444444333333

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.73  E-value=0.012  Score=68.83  Aligned_cols=36  Identities=14%  Similarity=0.147  Sum_probs=15.9

Q ss_pred             hhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHh
Q 004516          199 KISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETK  234 (747)
Q Consensus       199 ~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~ke  234 (747)
                      .+......+......+.....+...++.+|+..+..
T Consensus       338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~  373 (562)
T PHA02562        338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE  373 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333334444444444444444444444444444333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.66  E-value=0.25  Score=58.62  Aligned_cols=118  Identities=16%  Similarity=0.122  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004516           21 ALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELA  100 (747)
Q Consensus        21 ~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele  100 (747)
                      .+|+-...+++....   ...+++.++..+..+..+...++..+.....++.+...++++.-.++..+..++.-...++-
T Consensus        89 iyRrdv~llEddlk~---~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf  165 (1265)
T KOG0976|consen   89 IYRRDVNLLEDDLKH---HESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIF  165 (1265)
T ss_pred             HHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Confidence            344444445544222   44455555555555444444444444444444444333333333333333333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516          101 CKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEEL  141 (747)
Q Consensus       101 ~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL  141 (747)
                      ..-..|...-..|.+.+.++..+-.+.......++.+-+.+
T Consensus       166 ~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~  206 (1265)
T KOG0976|consen  166 MIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKF  206 (1265)
T ss_pred             HHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.65  E-value=0.23  Score=58.17  Aligned_cols=59  Identities=14%  Similarity=0.262  Sum_probs=31.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH
Q 004516          266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDK  324 (747)
Q Consensus       266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek  324 (747)
                      +.........++++....+...+++-...++.++.++..-..+.++++...+++..+..
T Consensus       504 laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~  562 (786)
T PF05483_consen  504 LAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGE  562 (786)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555556666666666666666666666666555544445554444444433333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.65  E-value=0.21  Score=57.64  Aligned_cols=55  Identities=22%  Similarity=0.232  Sum_probs=26.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHhhh
Q 004516           90 KKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSV  144 (747)
Q Consensus        90 ~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~~~  144 (747)
                      ..++.+++..+.++.++...++-+..++..-....+.+..+..+++.+++++..+
T Consensus       259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~l  313 (581)
T KOG0995|consen  259 GKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKL  313 (581)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444445455554444444444444444444444555555555554433

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.65  E-value=0.18  Score=61.68  Aligned_cols=34  Identities=9%  Similarity=0.074  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHH
Q 004516           15 AESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLD   51 (747)
Q Consensus        15 ~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~   51 (747)
                      +...++.++.++..+++....   .-...+++..+..
T Consensus       158 lK~EYeelK~E~~kAE~~t~~---~~~kkk~I~aEkk  191 (1141)
T KOG0018|consen  158 LKPEYEELKYEMAKAEETTTG---NYKKKKSIAAEKK  191 (1141)
T ss_pred             hhHHHHHHHHHHHHHHHHHhh---HhhhhhHHHHHHH
Confidence            344555555555555555222   3444444444443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.64  E-value=1.1e-05  Score=98.62  Aligned_cols=40  Identities=13%  Similarity=0.238  Sum_probs=0.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004516          270 VRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIG  309 (747)
Q Consensus       270 ~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~  309 (747)
                      ...++.+.++|.+.|...+..+.....++....++...+.
T Consensus       372 ~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~  411 (859)
T PF01576_consen  372 AAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELE  411 (859)
T ss_dssp             ----------------------------------------
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3444455555555444444444444444444433333333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.61  E-value=0.15  Score=54.82  Aligned_cols=14  Identities=7%  Similarity=0.309  Sum_probs=5.7

Q ss_pred             HHHHhhHHHHHHhH
Q 004516          173 ELREKKVGEVQRSI  186 (747)
Q Consensus       173 ~~kekel~~~~k~i  186 (747)
                      ....+++...++.+
T Consensus       141 ~~L~k~le~~~k~~  154 (294)
T COG1340         141 KELRKELEDAKKAL  154 (294)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444333

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.60  E-value=0.33  Score=58.42  Aligned_cols=8  Identities=13%  Similarity=0.314  Sum_probs=4.0

Q ss_pred             CCCCCCch
Q 004516          637 APTNQPDS  644 (747)
Q Consensus       637 ~~k~~p~~  644 (747)
                      +|.+.|.-
T Consensus       892 ~d~~~p~~  899 (1243)
T KOG0971|consen  892 TDSSSPYE  899 (1243)
T ss_pred             CCccchHH
Confidence            45555543

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.59  E-value=0.44  Score=59.55  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=15.2

Q ss_pred             ChhHHHHHHHHhhcccccHHHHhhhCCCCCcchHH
Q 004516          584 DGEELESLLRIVAQHRQTPKLRQTLGFADKEPGLQ  618 (747)
Q Consensus       584 d~del~~L~~~v~~~~~a~~L~~~Lgl~~k~~d~I  618 (747)
                      |++-+..|+..+-...-.   .+.+|.+.++|++.
T Consensus       855 D~e~l~~l~~~l~~i~~~---~~qiiIISH~eel~  886 (908)
T COG0419         855 DEERLEKLAEILEELLSD---GRQIIIISHVEELK  886 (908)
T ss_pred             CHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHH
Confidence            566665555444332111   34445555555554

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.53  E-value=0.37  Score=57.09  Aligned_cols=47  Identities=13%  Similarity=0.005  Sum_probs=20.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004516           61 SNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELG  107 (747)
Q Consensus        61 ~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~  107 (747)
                      ...|...+.++..+...+..+...-+.-+..+..+...+..+++.+.
T Consensus       111 ~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll  157 (569)
T PRK04778        111 ESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLL  157 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444444444444444444444444443

>PRK11637 AmiB activator; Provisional

Probab=97.50  E-value=0.08  Score=60.37  Aligned_cols=16  Identities=6%  Similarity=0.086  Sum_probs=6.3

Q ss_pred             HHHhHHHHHHHHHHHH
Q 004516          270 VRLHENEVESLEQELD  285 (747)
Q Consensus       270 ~kele~K~k~~EkeL~  285 (747)
                      +..+......+...|.
T Consensus       235 l~~l~~~~~~L~~~I~  250 (428)
T PRK11637        235 LSELRANESRLRDSIA  250 (428)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333444443

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.44  E-value=0.46  Score=56.18  Aligned_cols=51  Identities=10%  Similarity=0.126  Sum_probs=19.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516           91 KIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEEL  141 (747)
Q Consensus        91 eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL  141 (747)
                      .+..++..+......+..+...=.....++..+...++..++.|-...-.+
T Consensus       109 ~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~  159 (560)
T PF06160_consen  109 QLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSY  159 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            333333333333333333333333333333344444444444443333333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK11637 AmiB activator; Provisional

Probab=97.34  E-value=0.14  Score=58.28  Aligned_cols=38  Identities=11%  Similarity=0.202  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516          104 KELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEEL  141 (747)
Q Consensus       104 ~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL  141 (747)
                      ..+..+..+|...+.++..++.++...+.+|...++.+
T Consensus        89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l  126 (428)
T PRK11637         89 RKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL  126 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.32  E-value=0.75  Score=56.02  Aligned_cols=94  Identities=11%  Similarity=0.143  Sum_probs=51.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcccchh----hhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004516            6 VNISEELRVAESKKEALRRSFDIARSQSNSVP----VFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESK   81 (747)
Q Consensus         6 ~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~----~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~l   81 (747)
                      ..+..++++++..+.+++.+...++++...+.    .+..+.+++++++..-..........+......+.+...++...
T Consensus       268 ~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I  347 (1200)
T KOG0964|consen  268 EDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKI  347 (1200)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            34566777777777777777777777644322    24445556665555544444444444444444555555555555


Q ss_pred             HHHHHHHHhhHHHHHHHH
Q 004516           82 EIELVLVGKKIEDCNGEL   99 (747)
Q Consensus        82 E~eieele~eLeElE~el   99 (747)
                      +..+..+..+-......+
T Consensus       348 ~Pky~~l~~ee~~~~~rl  365 (1200)
T KOG0964|consen  348 EPKYNSLVDEEKRLKKRL  365 (1200)
T ss_pred             hhHHHHHHhHHHHHHHHH
Confidence            555554444333333333

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.29  E-value=0.76  Score=55.47  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH
Q 004516          162 KNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKE  197 (747)
Q Consensus       162 ~~~~ee~~~El~~kekel~~~~k~ie~~~~el~~ke  197 (747)
                      +.+..+..++++.|..++++..+.-+.-..+++.-+
T Consensus       395 k~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aE  430 (1243)
T KOG0971|consen  395 KQDHQKLQKELEKKNSELEELRRQKERLSRELDQAE  430 (1243)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555444444444444333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.28  E-value=0.62  Score=54.26  Aligned_cols=37  Identities=24%  Similarity=0.317  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 004516          158 LQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLA  194 (747)
Q Consensus       158 L~~~~~~~ee~~~El~~kekel~~~~k~ie~~~~el~  194 (747)
                      +...+..+..+.+++....++......+|...++++.
T Consensus       157 ~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld  193 (546)
T KOG0977|consen  157 INTLKRRIKALEDELKRLKAENSRLREELARARKQLD  193 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3455666666666666666666666666666666444

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.28  E-value=0.89  Score=55.99  Aligned_cols=188  Identities=13%  Similarity=0.200  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHhhcC
Q 004516          246 QSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGK-------YIEELNQD  318 (747)
Q Consensus       246 ~~~i~e~~~ele~k~~~l~~lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~-------e~e~~~kE  318 (747)
                      ..++.+++.++..+.+++.+.+.++..+++..+-..-++++.+.++.....|+.-.+..+.++.-       ++..++.+
T Consensus       661 k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~  740 (1141)
T KOG0018|consen  661 KERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGE  740 (1141)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence            34666666666665555556666666666666666666666666666666666666665554443       34444444


Q ss_pred             chhhHHhHHHHHHhHHHH-----------------HHHhhHHHhhhhHh----------------HHhHHHhhHHHHHHH
Q 004516          319 PASKDKELKFVQQSIKEC-----------------SKEFQWKKEESIST----------------EKTIAECSKEVELKK  365 (747)
Q Consensus       319 Le~kek~Le~~~~~L~e~-----------------~kEle~k~~ele~~----------------~Kele~~~kele~Ke  365 (747)
                      +...+++...+.+.+|..                 ..++..+..+|+..                +..++.|.+.++..+
T Consensus       741 ~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~  820 (1141)
T KOG0018|consen  741 MKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLE  820 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHH
Confidence            444444444444444311                 22333333333321                446666777777777


Q ss_pred             HHHhHHHHHhhHHHhhHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhhhhH
Q 004516          366 NQFNLTQHESNLFQTRTIGYLKELKEK-EKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKEFGSI  434 (747)
Q Consensus       366 ~ql~~~~~ELe~~~~~~e~~~keleel-e~~leslE~~le~k~keLe~k~k~le~~~kE~el~E~~i~~~  434 (747)
                      .+++.....-+...+.+... .+++.. +..++..+.++.+-.+.+....+++-....++...++.++-.
T Consensus       821 ~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~  889 (1141)
T KOG0018|consen  821 KEIEGLKKDEEAAEKIIAEI-EELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERK  889 (1141)
T ss_pred             HhHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence            77766555544444444433 222221 223444555555555555555555555444554444444433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.26  E-value=0.42  Score=51.86  Aligned_cols=33  Identities=12%  Similarity=0.135  Sum_probs=15.8

Q ss_pred             HHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHH
Q 004516           24 RSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEK   59 (747)
Q Consensus        24 k~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee   59 (747)
                      .+|..|.++..+   +..+++.++.+=..+...+..
T Consensus         4 ~eL~~LNdRla~---YIekVr~LE~~N~~Le~~i~~   36 (312)
T PF00038_consen    4 EELQSLNDRLAS---YIEKVRFLEQENKRLESEIEE   36 (312)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHH
Confidence            345555555333   444555555444444444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.16  E-value=1.3  Score=55.40  Aligned_cols=6  Identities=33%  Similarity=0.877  Sum_probs=3.0

Q ss_pred             HHHhhh
Q 004516          553 WKKKMR  558 (747)
Q Consensus       553 WK~ki~  558 (747)
                      |+.-..
T Consensus      1122 ~~~~~V 1127 (1317)
T KOG0612|consen 1122 WKRIYV 1127 (1317)
T ss_pred             hheeEE
Confidence            555444

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.15  E-value=0.82  Score=54.28  Aligned_cols=47  Identities=6%  Similarity=0.130  Sum_probs=28.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004516          265 LLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKY  311 (747)
Q Consensus       265 ~lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e  311 (747)
                      .+=.||-++....++-..++...-.....-.++++....++.+.-..
T Consensus       488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v  534 (594)
T PF05667_consen  488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTV  534 (594)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            45555666666666666666666666666666666666666655543

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.11  E-value=0.045  Score=57.36  Aligned_cols=36  Identities=17%  Similarity=0.162  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHH
Q 004516           21 ALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEK   59 (747)
Q Consensus        21 ~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee   59 (747)
                      .+..++..+.-.+.+   ....++.+..++..+++.+..
T Consensus        14 ~lD~e~~rl~~~~~~---~~~~l~k~~~e~e~~~~~~~~   49 (239)
T COG1579          14 KLDLEKDRLEPRIKE---IRKALKKAKAELEALNKALEA   49 (239)
T ss_pred             HHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444333   333333333333333333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.09  E-value=0.17  Score=60.93  Aligned_cols=27  Identities=19%  Similarity=0.436  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhHH
Q 004516          161 LKNLIKECCDEIELREKKVGEVQRSIE  187 (747)
Q Consensus       161 ~~~~~ee~~~El~~kekel~~~~k~ie  187 (747)
                      .+.++.....||+.++.++...+.++.
T Consensus       550 lE~E~~~lr~elk~kee~~~~~e~~~~  576 (697)
T PF09726_consen  550 LESELKKLRRELKQKEEQIRELESELQ  576 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555555555543

; GO: 0016021 integral to membrane

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.97  E-value=1.7  Score=53.74  Aligned_cols=38  Identities=21%  Similarity=0.223  Sum_probs=21.0

Q ss_pred             hhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhH
Q 004516          199 KISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLE  236 (747)
Q Consensus       199 ~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele  236 (747)
                      .+..+.+.+.+-..+...-|+.+...-..+..+.+.++
T Consensus      1592 ~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1592 DIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555666666666666666665555555444433

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=1.4  Score=52.54  Aligned_cols=10  Identities=20%  Similarity=0.069  Sum_probs=5.0

Q ss_pred             HHHHHHHHhh
Q 004516          548 KVAGEWKKKM  557 (747)
Q Consensus       548 ~lA~~WK~ki  557 (747)
                      -+|..|-..+
T Consensus       780 ~~ad~~~~~~  789 (1118)
T KOG1029|consen  780 VVADTKNESA  789 (1118)
T ss_pred             eecccccchh
Confidence            4555555443

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.95  E-value=1.7  Score=53.30  Aligned_cols=18  Identities=11%  Similarity=-0.051  Sum_probs=10.2

Q ss_pred             hHHHHHhhCCCchhHHHH
Q 004516          481 KVFDTIKSARDPALLVLH  498 (747)
Q Consensus       481 e~~~AL~~a~DPaklVLd  498 (747)
                      ..+.|+..|+-|+.+--+
T Consensus       773 ~~~~~rq~asrq~ales~  790 (1195)
T KOG4643|consen  773 RQKVARQNASRQQALESN  790 (1195)
T ss_pred             cchHHHhhccchhhhhhc
Confidence            345566666666664433

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.86  E-value=0.0013  Score=79.53  Aligned_cols=23  Identities=22%  Similarity=0.176  Sum_probs=17.5

Q ss_pred             CCCCCcchHHHHHhhcCCcccee
Q 004516          609 GFADKEPGLQCSTTAEGRSAPSM  631 (747)
Q Consensus       609 gl~~k~~d~I~~LI~~g~~i~Av  631 (747)
                      +|...+++.|+.-|...++|||.
T Consensus       687 ~~~~~~~~~i~~~v~~~~siP~F  709 (722)
T PF05557_consen  687 EFSPELEDLIEFWVEERNSIPAF  709 (722)
T ss_dssp             CCHHCTHHHHHHHTTTS--HHHH
T ss_pred             chHHHHHHHHHHHHHcCCChhHH
Confidence            46678889999999999999985

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.60  E-value=1.5  Score=49.55  Aligned_cols=52  Identities=15%  Similarity=0.206  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516           72 DQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLK  123 (747)
Q Consensus        72 Ee~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~k  123 (747)
                      .....+...++..|.+.+.++..++..+-....++..+...|++....+..+
T Consensus        55 ~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l  106 (420)
T COG4942          55 REQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL  106 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence            4444444444444444444444444444444444444444444444444433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.59  E-value=2.5  Score=50.28  Aligned_cols=19  Identities=16%  Similarity=0.240  Sum_probs=7.9

Q ss_pred             hhhhhHHHHHHHHHHHHhh
Q 004516          198 SKISSMRTLIEEYEEVLKD  216 (747)
Q Consensus       198 ~~l~~~e~~i~e~~~EL~~  216 (747)
                      .++..++..+.++..+++.
T Consensus       461 ~e~~~Kee~~~qL~~e~e~  479 (594)
T PF05667_consen  461 EEIRQKEELYKQLVKELEK  479 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            3333334444444444443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.59  E-value=3.3  Score=51.53  Aligned_cols=29  Identities=10%  Similarity=0.048  Sum_probs=13.4

Q ss_pred             HHHHHHHHhHHHHHhhHHHhhHHhHHHHH
Q 004516          361 VELKKNQFNLTQHESNLFQTRTIGYLKEL  389 (747)
Q Consensus       361 le~Ke~ql~~~~~ELe~~~~~~e~~~kel  389 (747)
                      .+.++.+|+....+|.-+.+.++.....+
T Consensus      1719 y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1719 YLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred             HhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33444444444444444444444444433

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=96.54  E-value=4  Score=51.93  Aligned_cols=140  Identities=25%  Similarity=0.208  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHhhhhHHHHHHhHhhhhhhhhhh
Q 004516           80 SKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRE--------LQLKENELNSLSGSLNLKKEELCSVQGWINKC  151 (747)
Q Consensus        80 ~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~E--------Le~keeeL~e~~~eLe~~eeeL~~~~~~l~~~  151 (747)
                      .++..+..++..+.++++.....+.....+......+...        +..+..-+..-..........|....+++.+.
T Consensus       571 ~le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~~lk~~sgt~~~~~~~le~l~~eie~~  650 (1294)
T KOG0962|consen  571 SLEKELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKDESGTIDEYLDLLERLKGEIEKA  650 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444333333333333        33333334333444444445555555555333


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHH-HH-HHHHhhhhhHHHHHHHHHHHHhhcccc
Q 004516          152 QANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEK-QL-AFKESKISSMRTLIEEYEEVLKDKERP  220 (747)
Q Consensus       152 ~~~~~~L~~~~~~~ee~~~El~~kekel~~~~k~ie~~~~-el-~~ke~~l~~~e~~i~e~~~EL~~KEke  220 (747)
                      ....+-|+.+..-|+++...... ...||.|.+..+.... +| ..-...+...-+.+.+....|...++.
T Consensus       651 rk~l~~lq~~s~~Y~k~Ie~~~~-~~~CplC~r~f~~eee~ef~~~l~~~i~s~p~~~~~~~~~l~k~~k~  720 (1294)
T KOG0962|consen  651 RKDLAMLQGRSALYRKFIEIACR-SHCCPLCQRSFTTEEEVEFIKKLESKIDSAPDKLEEAEVELSKEEKI  720 (1294)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHhh-ccCCCccCCccchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            33444556678888888777776 6678999888765544 11 111233444445555555555555544

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.54  E-value=4.8  Score=52.85  Aligned_cols=28  Identities=14%  Similarity=0.222  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhh
Q 004516           12 LRVAESKKEALRRSFDIARSQSNSVPVF   39 (747)
Q Consensus        12 l~~~e~~~~~lrk~l~~Le~~r~si~~l   39 (747)
                      +..++.-+...|.++..+..-.+....+
T Consensus       232 i~~m~~~l~~~r~t~~~~~~tq~drdlF  259 (1486)
T PRK04863        232 FQDMEAALRENRMTLEAIRVTQSDRDLF  259 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            4455555556666666666555553333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.46  E-value=1.4  Score=53.24  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=19.1

Q ss_pred             chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004516          220 PYDEVKKSLILCETKLESEKKELELTQSSIKEL  252 (747)
Q Consensus       220 el~~~~~~ie~~~kele~k~~El~~~~~~i~e~  252 (747)
                      .|-+.+.+++.....+..++.||..+..+|++.
T Consensus       623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~  655 (697)
T PF09726_consen  623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL  655 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566666666666666666655555544

; GO: 0016021 integral to membrane

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.41  E-value=0.00081  Score=81.28  Aligned_cols=32  Identities=25%  Similarity=0.195  Sum_probs=0.0

Q ss_pred             HHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 004516          183 QRSIEEHEKQLAFKESKISSMRTLIEEYEEVL  214 (747)
Q Consensus       183 ~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL  214 (747)
                      ...|+..++++..-+.++..+...+..+.-++
T Consensus       362 ~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~  393 (713)
T PF05622_consen  362 KSQLEEYKKQIQELEQKLSEESRRADKLEFEN  393 (713)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444333333333333333333333333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.40  E-value=0.0041  Score=75.38  Aligned_cols=30  Identities=7%  Similarity=-0.028  Sum_probs=17.4

Q ss_pred             CcccccCChHHHHHHHHHhhchhhhhhhhHHH
Q 004516          453 DPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFD  484 (747)
Q Consensus       453 ~~~c~~Md~~gL~~~~~~~~~~~~~lr~e~~~  484 (747)
                      +-++.++++..-..++..  ..+..|+.|.-.
T Consensus       548 rVL~lr~NP~~~~~~~k~--~~l~~L~~En~~  577 (722)
T PF05557_consen  548 RVLHLRDNPTSKAEQIKK--STLEALQAENED  577 (722)
T ss_dssp             EEEEESS-HHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             eeeeeCCCcHHHHHHHHH--HHHHHHHHHHHH
Confidence            445666776666666643  456777776443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.40  E-value=2.9  Score=48.87  Aligned_cols=116  Identities=17%  Similarity=0.224  Sum_probs=51.2

Q ss_pred             HHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516           23 RRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQS---------------NDVDVKIRLLDQRAKEIESKEIELVL   87 (747)
Q Consensus        23 rk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~---------------~eL~~k~~elEe~~kele~lE~eiee   87 (747)
                      +++|..|.++...   +...++-++.+=..+...+..+.               .++......|++..++...++.+|..
T Consensus        41 K~El~~LNDRLA~---YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~k  117 (546)
T KOG0977|consen   41 KKELQELNDRLAV---YIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITK  117 (546)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666333   44455555544443333333321               23333333445555555555555555


Q ss_pred             HHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516           88 VGKKIEDCNGELACKKKELG-------LVQKRIGECKRELQLKENELNSLSGSLNLKKEEL  141 (747)
Q Consensus        88 le~eLeElE~ele~~k~eL~-------~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL  141 (747)
                      ++.++.++...+.+..+...       .....+..+++++.....++..+..++...+.+.
T Consensus       118 l~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en  178 (546)
T KOG0977|consen  118 LREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAEN  178 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555544444444433333       3333444444444444444333333333333333

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=96.38  E-value=4.9  Score=51.17  Aligned_cols=53  Identities=15%  Similarity=0.277  Sum_probs=28.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHH
Q 004516            6 VNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLE   58 (747)
Q Consensus         6 ~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~ie   58 (747)
                      ..++.++-.+..++.++++.+.+++.....+..+..+...+..+++.+...+.
T Consensus       240 ~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~  292 (1294)
T KOG0962|consen  240 SELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKIL  292 (1294)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34555556666666666666666665555544444444444444444444443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=4  Score=48.88  Aligned_cols=49  Identities=20%  Similarity=0.179  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004516          204 RTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKEL  252 (747)
Q Consensus       204 e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e~  252 (747)
                      -..+..+...|..-.-.+..++..|+...+..+..-.|+.-++.+|.++
T Consensus       450 n~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~  498 (1118)
T KOG1029|consen  450 NFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKEL  498 (1118)
T ss_pred             HHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444555555555555555544444444444444333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.18  E-value=0.52  Score=45.86  Aligned_cols=127  Identities=13%  Similarity=0.175  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 004516           13 RVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQR---AKEIESKEIELVLVG   89 (747)
Q Consensus        13 ~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~---~kele~lE~eieele   89 (747)
                      ..+-.+.+.+...+..++++...   +..++.++...+..+...++.+...+......+++.   ....+.+...|.-++
T Consensus        10 d~a~~r~e~~e~~~K~le~~~~~---~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LE   86 (143)
T PF12718_consen   10 DNAQDRAEELEAKVKQLEQENEQ---KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLE   86 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHH
Confidence            33334444444444444444222   333444444333333334333333333333322222   233445666666666


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHh
Q 004516           90 KKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELC  142 (747)
Q Consensus        90 ~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~  142 (747)
                      .++...+..+......+..+....+.++.....++.+...|...++....++.
T Consensus        87 eele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~  139 (143)
T PF12718_consen   87 EELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK  139 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666777777777777777666666666554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.10  E-value=0.0015  Score=79.02  Aligned_cols=6  Identities=17%  Similarity=0.312  Sum_probs=0.0

Q ss_pred             HHHHHh
Q 004516          466 FLLNQH  471 (747)
Q Consensus       466 ~~~~~~  471 (747)
                      .|+...
T Consensus       688 sfL~rq  693 (713)
T PF05622_consen  688 SFLARQ  693 (713)
T ss_dssp             ------
T ss_pred             cHHHHh
Confidence            444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.08  E-value=5  Score=48.43  Aligned_cols=18  Identities=17%  Similarity=0.344  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 004516          396 FDSLKKGLEDRLQDLEIK  413 (747)
Q Consensus       396 leslE~~le~k~keLe~k  413 (747)
                      ...++..+...+..|-.+
T Consensus       504 ~~~le~~~~~~f~~l~~k  521 (650)
T TIGR03185       504 LQQLEEEITKSFKKLMRK  521 (650)
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            344555556666666553

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.08  E-value=4.3  Score=47.69  Aligned_cols=40  Identities=20%  Similarity=0.193  Sum_probs=21.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHH
Q 004516            8 ISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLE   47 (747)
Q Consensus         8 l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le   47 (747)
                      .+.|.+.+..+++.++.++..++.....|..+...++.++
T Consensus       119 ~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~  158 (629)
T KOG0963|consen  119 ASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLE  158 (629)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHH
Confidence            4556666666666666666666655555444443333333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.06  E-value=2  Score=43.92  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=14.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhc
Q 004516            8 ISEELRVAESKKEALRRSFDIARSQ   32 (747)
Q Consensus         8 l~~el~~~e~~~~~lrk~l~~Le~~   32 (747)
                      +.++|..+..++++++++...|+.-
T Consensus        17 L~n~l~elq~~l~~l~~ENk~Lk~l   41 (194)
T PF15619_consen   17 LQNELAELQRKLQELRKENKTLKQL   41 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555666666665555555443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.05  E-value=5.1  Score=48.31  Aligned_cols=47  Identities=30%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516           75 AKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQ  121 (747)
Q Consensus        75 ~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe  121 (747)
                      ..+++.++.++.....++..+..++..++.++..+..++..++..+.
T Consensus       208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~  254 (650)
T TIGR03185       208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR  254 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.03  E-value=0.75  Score=44.79  Aligned_cols=46  Identities=13%  Similarity=0.197  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516           75 AKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKREL  120 (747)
Q Consensus        75 ~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~EL  120 (747)
                      ...++.++..+..+..+....+.++.+++..+..++.+++.++..+
T Consensus        13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l   58 (143)
T PF12718_consen   13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL   58 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444433333333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.01  E-value=5.3  Score=48.06  Aligned_cols=75  Identities=16%  Similarity=0.223  Sum_probs=39.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004516            5 TVNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIE   84 (747)
Q Consensus         5 ~~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~e   84 (747)
                      +.++++.+-.+...+++++............       ...+..++..+.+.+.+....+......+-+....+..+...
T Consensus       229 ~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~-------~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~  301 (698)
T KOG0978|consen  229 VIKLEEKLAQCVKEYEMLRKEFENNKSQNDL-------FSSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQ  301 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhHHhhhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            3566666777777777777776666655332       344444555555555555555544333333333333333333


Q ss_pred             HH
Q 004516           85 LV   86 (747)
Q Consensus        85 ie   86 (747)
                      ..
T Consensus       302 ~~  303 (698)
T KOG0978|consen  302 HS  303 (698)
T ss_pred             HH
Confidence            33

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=95.91  E-value=5.3  Score=47.35  Aligned_cols=16  Identities=13%  Similarity=0.231  Sum_probs=6.9

Q ss_pred             HhhHHHHHHhHHHHHH
Q 004516          176 EKKVGEVQRSIEEHEK  191 (747)
Q Consensus       176 ekel~~~~k~ie~~~~  191 (747)
                      .+.+|..-.+|..+..
T Consensus       221 ~~~~P~ql~eL~~gy~  236 (560)
T PF06160_consen  221 QKEFPDQLEELKEGYR  236 (560)
T ss_pred             HHHhHHHHHHHHHHHH
Confidence            3344444444444444

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK09039 hypothetical protein; Validated

Probab=95.91  E-value=0.91  Score=50.45  Aligned_cols=19  Identities=16%  Similarity=0.172  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 004516           10 EELRVAESKKEALRRSFDI   28 (747)
Q Consensus        10 ~el~~~e~~~~~lrk~l~~   28 (747)
                      .++.-.+.++..+..+|..
T Consensus        46 ~~i~~~~~eL~~L~~qIa~   64 (343)
T PRK09039         46 REISGKDSALDRLNSQIAE   64 (343)
T ss_pred             HHHhhHHHHHHHHHHHHHH
Confidence            3343444444444444433

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.72  E-value=6.1  Score=46.53  Aligned_cols=66  Identities=23%  Similarity=0.327  Sum_probs=32.4

Q ss_pred             HHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHH
Q 004516          169 CDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELEL  244 (747)
Q Consensus       169 ~~El~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~  244 (747)
                      ...+...++.+...+..|.....++-          +....|-++...+-.++.-++.+++.....+...+.+.+.
T Consensus       195 ~~q~~~le~ki~~lq~a~~~t~~el~----------~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~  260 (629)
T KOG0963|consen  195 QEQLEELEKKISSLQSAIEDTQNELF----------DLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQ  260 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHH----------HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555566666666666655333          3333344444444444444444444444444444444433

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.69  E-value=7.2  Score=47.17  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=13.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 004516          286 SMRKQQKKYFDDVELKKRELNEIGKYIEELNQDP  319 (747)
Q Consensus       286 ~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kEL  319 (747)
                      +....-++..-.+..-++....+.+.++++..-.
T Consensus       908 s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~  941 (970)
T KOG0946|consen  908 SNKQEQEELLVLLADQKEKIQALKEALEDLNQPV  941 (970)
T ss_pred             chhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCh
Confidence            3333333333444444444444444333333333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.64  E-value=5.3  Score=45.33  Aligned_cols=63  Identities=17%  Similarity=0.218  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhH
Q 004516           72 DQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSL  134 (747)
Q Consensus        72 Ee~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eL  134 (747)
                      ....++++.++..+.........++..+.+.+.++..+...|....+++..++.+|......|
T Consensus        41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l  103 (420)
T COG4942          41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL  103 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence            444455555555555555555555555555555555555554444444444444444443333

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.48  E-value=2.1  Score=51.50  Aligned_cols=26  Identities=27%  Similarity=0.222  Sum_probs=15.6

Q ss_pred             HHHhhhhhHHHHHHHHHHHHhhcccc
Q 004516          195 FKESKISSMRTLIEEYEEVLKDKERP  220 (747)
Q Consensus       195 ~ke~~l~~~e~~i~e~~~EL~~KEke  220 (747)
                      .-..++....+.+.+..+.+.+.+..
T Consensus       859 ~l~~~~k~~~nli~~ltEk~~sl~~q  884 (970)
T KOG0946|consen  859 NLQEKIKFGNNLIKELTEKISSLEAQ  884 (970)
T ss_pred             HHHHHhhhhhhHHHHHhhhhhhHHHh
Confidence            33444555567777777777666633

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=95.33  E-value=6.1  Score=44.00  Aligned_cols=13  Identities=38%  Similarity=0.657  Sum_probs=6.8

Q ss_pred             cCccccccccCCC
Q 004516          702 LNRSSLATQHGPG  714 (747)
Q Consensus       702 ~~~~~~~~~~~~~  714 (747)
                      |.+.-.|.+|||-
T Consensus       483 lr~R~~a~r~~~~  495 (499)
T COG4372         483 LRRRGWAPRHAPR  495 (499)
T ss_pred             hheeeecccCCcc
Confidence            4445555556553

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=95.18  E-value=4.2  Score=41.36  Aligned_cols=46  Identities=9%  Similarity=0.123  Sum_probs=20.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004516          266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKY  311 (747)
Q Consensus       266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e  311 (747)
                      ++..++.+..|++..+..-+...+++..-.+++..++..+.....+
T Consensus       142 ~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~k  187 (205)
T KOG1003|consen  142 YEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEK  187 (205)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence            4444555555554444444444444444444444444444333333

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.03  E-value=9.1  Score=44.39  Aligned_cols=48  Identities=17%  Similarity=0.129  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516           75 AKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQL  122 (747)
Q Consensus        75 ~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~  122 (747)
                      ..+......++.=+...+.+.+..++.....+....+.|-.+...|..
T Consensus       235 ~ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~  282 (654)
T KOG4809|consen  235 LAELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQR  282 (654)
T ss_pred             HHHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            334444444444455555566666666666666666666665555554

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=94.99  E-value=12  Score=45.50  Aligned_cols=46  Identities=20%  Similarity=0.225  Sum_probs=20.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004516          266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKY  311 (747)
Q Consensus       266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e  311 (747)
                      ++.++..++.+...+-..|...+.++.....++.....++..+...
T Consensus       270 L~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~  315 (717)
T PF09730_consen  270 LKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQ  315 (717)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=94.86  E-value=5.4  Score=40.90  Aligned_cols=22  Identities=14%  Similarity=0.285  Sum_probs=9.3

Q ss_pred             HhhHHHHHHHHHHHHHHHhhhH
Q 004516           43 WDDLEEHLDLTKKSLEKQSNDV   64 (747)
Q Consensus        43 l~~le~el~el~~~iee~~~eL   64 (747)
                      +..+...+.++...+.++..+.
T Consensus        14 i~~L~n~l~elq~~l~~l~~EN   35 (194)
T PF15619_consen   14 IKELQNELAELQRKLQELRKEN   35 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=94.82  E-value=20  Score=47.18  Aligned_cols=31  Identities=6%  Similarity=0.063  Sum_probs=11.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004516           82 EIELVLVGKKIEDCNGELACKKKELGLVQKR  112 (747)
Q Consensus        82 E~eieele~eLeElE~ele~~k~eL~~le~e  112 (747)
                      ...+.....++......+......+......
T Consensus       799 ~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~  829 (1353)
T TIGR02680       799 ERQAESAERELARAARKAAAAAAAWKQARRE  829 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.61  E-value=4.2  Score=39.54  Aligned_cols=90  Identities=16%  Similarity=0.223  Sum_probs=45.5

Q ss_pred             hhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516           39 FTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKR  118 (747)
Q Consensus        39 l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~  118 (747)
                      ....|++.+.+-..+.+.+..+..++.......+....+.+...+++..++.++..+...+..+..++..+..+...+..
T Consensus         8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k   87 (140)
T PF10473_consen    8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK   87 (140)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555444444455555555555555555555555555555555555555444444444


Q ss_pred             HHHHHHHHHh
Q 004516          119 ELQLKENELN  128 (747)
Q Consensus       119 ELe~keeeL~  128 (747)
                      .+...+.++.
T Consensus        88 ~lq~~q~kv~   97 (140)
T PF10473_consen   88 ELQKKQEKVS   97 (140)
T ss_pred             HHHHHHHHHH
Confidence            4444444443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK09039 hypothetical protein; Validated

Probab=94.55  E-value=6.5  Score=43.76  Aligned_cols=17  Identities=18%  Similarity=0.231  Sum_probs=7.9

Q ss_pred             CCCchhHHHHHhhccCC
Q 004516          489 ARDPALLVLHAISGFYP  505 (747)
Q Consensus       489 a~DPaklVLdai~gf~~  505 (747)
                      ..+|.++.....+.+.|
T Consensus       304 Gi~~~ri~~~G~G~~~P  320 (343)
T PRK09039        304 GVPADRLAAAGFGEFQP  320 (343)
T ss_pred             CCCHHHeEEEEeCCcCc
Confidence            44555655433333333

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=94.51  E-value=11  Score=42.98  Aligned_cols=69  Identities=14%  Similarity=0.228  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516           73 QRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEEL  141 (747)
Q Consensus        73 e~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL  141 (747)
                      ++...+..+...+..+......++.-...++..+...-+.+..++.++..+++++..++.........+
T Consensus       292 k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~  360 (622)
T COG5185         292 KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL  360 (622)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            333344444444444444444444444444444444444555555555555555544444444444333

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.36  E-value=11  Score=42.30  Aligned_cols=29  Identities=17%  Similarity=0.217  Sum_probs=19.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 004516            7 NISEELRVAESKKEALRRSFDIARSQSNS   35 (747)
Q Consensus         7 ~l~~el~~~e~~~~~lrk~l~~Le~~r~s   35 (747)
                      .+..++..++.++..++..+..+....+.
T Consensus        78 ~~~~~l~~l~~~~~~l~a~~~~l~~~~~~  106 (423)
T TIGR01843        78 DVEADAAELESQVLRLEAEVARLRAEADS  106 (423)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34567777777777777777766665443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=94.35  E-value=16  Score=43.98  Aligned_cols=54  Identities=13%  Similarity=0.195  Sum_probs=32.4

Q ss_pred             CcchhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHH
Q 004516            2 DNCTVNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLE   58 (747)
Q Consensus         2 ~~~~~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~ie   58 (747)
                      |.+.++|..+-..+..+...+.-++..+..+...   ....+..++..+..++..+.
T Consensus        14 d~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~---~~~~V~eLE~sL~eLk~q~~   67 (617)
T PF15070_consen   14 DQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEH---DISRVQELERSLSELKNQMA   67 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhc
Confidence            4556666666666666666666666666666444   55555555555555544443

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=94.08  E-value=17  Score=43.36  Aligned_cols=33  Identities=18%  Similarity=0.032  Sum_probs=19.7

Q ss_pred             HHhhhCCCCCCChhHHHHHHHHhhccc-ccHHHH
Q 004516          573 LLAAYRLAPAFDGEELESLLRIVAQHR-QTPKLR  605 (747)
Q Consensus       573 lla~fgl~s~fd~del~~L~~~v~~~~-~a~~L~  605 (747)
                      .|--||=..+-..+-=++|++.-..++ |..+|.
T Consensus       923 ~LqmyGEk~Ee~EELrlDl~dlK~mYk~QIdeLl  956 (961)
T KOG4673|consen  923 ALQMYGEKDEELEELRLDLVDLKEMYKEQIDELL  956 (961)
T ss_pred             HHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            444588777666666667776665544 344443

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=94.01  E-value=17  Score=43.26  Aligned_cols=108  Identities=18%  Similarity=0.215  Sum_probs=50.6

Q ss_pred             hhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHH
Q 004516          199 KISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLE--------LLQGRV  270 (747)
Q Consensus       199 ~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~El~~~~~~i~e~~~ele~k~~~l~--------~lee~~  270 (747)
                      .++.-...+..+..-......-++..++.+-   ++-..++.+.......++.++..|..++..-.        -|.+.+
T Consensus       538 ~~~~sr~~~~~le~~~~a~qat~d~a~~Dlq---k~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei  614 (961)
T KOG4673|consen  538 YYSNSRALAAALEAQALAEQATNDEARSDLQ---KENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEI  614 (961)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhhhhhHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444455555555555331   12222233443333444445444443333221        244555


Q ss_pred             HHhHHHHHHHH------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004516          271 RLHENEVESLE------------------QELDSMRKQQKKYFDDVELKKRELNEIG  309 (747)
Q Consensus       271 kele~K~k~~E------------------keL~~~~k~l~~~~~ele~kek~~e~~~  309 (747)
                      ..|...+...|                  ..++.++..+..+-..|+..++.+....
T Consensus       615 ~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL  671 (961)
T KOG4673|consen  615 EDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERL  671 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence            55544444443                  2566666666666666666665554443

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=93.92  E-value=22  Score=44.20  Aligned_cols=41  Identities=12%  Similarity=0.099  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 004516          186 IEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCET  233 (747)
Q Consensus       186 ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~k  233 (747)
                      +..++.+|.....+..       .....+..+...+..+.+.++...+
T Consensus       176 ll~~h~eL~~lr~~e~-------~Le~~~~~~~~~l~~L~~~~~~l~k  216 (1072)
T KOG0979|consen  176 LLQYHIELMDLREDEK-------SLEDKLTTKTEKLNRLEDEIDKLEK  216 (1072)
T ss_pred             hHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4555665665543333       3333334444444444444444333

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.70  E-value=9.7  Score=44.15  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=12.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhc
Q 004516            8 ISEELRVAESKKEALRRSFDIARSQ   32 (747)
Q Consensus         8 l~~el~~~e~~~~~lrk~l~~Le~~   32 (747)
                      ++.++..++.+++....++..+..+
T Consensus       166 l~~ql~~~~~~L~~ae~~l~~f~~~  190 (498)
T TIGR03007       166 IDEQIKTYEKKLEAAENRLKAFKQE  190 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445555555555555555555443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=93.55  E-value=22  Score=42.96  Aligned_cols=23  Identities=13%  Similarity=0.127  Sum_probs=10.0

Q ss_pred             hHhhHHHHHHHHHHHHHHHhhhH
Q 004516           42 QWDDLEEHLDLTKKSLEKQSNDV   64 (747)
Q Consensus        42 ~l~~le~el~el~~~iee~~~eL   64 (747)
                      .|.+...++..++.+.......+
T Consensus       287 ~~k~t~~~~~~lr~~~~s~~~~~  309 (698)
T KOG0978|consen  287 ELKDTESDNLKLRKQHSSAADSL  309 (698)
T ss_pred             HHhcccchHHHHHHHHHHHHhhc
Confidence            33334444444444444444444

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=93.46  E-value=19  Score=41.92  Aligned_cols=66  Identities=17%  Similarity=0.192  Sum_probs=35.1

Q ss_pred             hhHhHHhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516          347 SISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEI  412 (747)
Q Consensus       347 le~~~Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~keleele~~leslE~~le~k~keLe~  412 (747)
                      |.++...+......++....-+......|+...+.+..+.......++++.++++.=-.-.+.+..
T Consensus       356 L~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~  421 (570)
T COG4477         356 LKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLER  421 (570)
T ss_pred             HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444445555555555555566666666666666666666666666655543333333333

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=93.38  E-value=21  Score=42.07  Aligned_cols=23  Identities=17%  Similarity=0.160  Sum_probs=10.8

Q ss_pred             hhhhcccCcccccCChHHHHHHH
Q 004516          446 LLQAKTEDPEKLTSSGRYLQFLL  468 (747)
Q Consensus       446 ~~~~~~l~~~c~~Md~~gL~~~~  468 (747)
                      .++++.++.----=+|+..+.|-
T Consensus       209 ~lp~d~~kgriigreGrnir~~e  231 (514)
T TIGR03319       209 NLPNDEMKGRIIGREGRNIRALE  231 (514)
T ss_pred             EcCChhhhccccCCCcchHHHHH
Confidence            34433443322333566666663

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.34  E-value=5.4  Score=43.51  Aligned_cols=136  Identities=18%  Similarity=0.182  Sum_probs=59.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhH-hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004516            6 VNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQW-DDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIE   84 (747)
Q Consensus         6 ~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l-~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~e   84 (747)
                      +.+..+|+.++.+-..||.+-..|...-..+..-..++ .+-=.++..++..+..+..+|..+..+......++..+..+
T Consensus       163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq  242 (306)
T PF04849_consen  163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQ  242 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666555555555555554433322111111 11113444555555555555544444444444444444444


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516           85 LVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEEL  141 (747)
Q Consensus        85 ieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL  141 (747)
                      +-++...+..+--+-+.+...+...+..=..+.+++..++.++.+...-|.+.++++
T Consensus       243 ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEEl  299 (306)
T PF04849_consen  243 IVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEEL  299 (306)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444433333333344444444444444444444444433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=93.29  E-value=11  Score=38.54  Aligned_cols=63  Identities=24%  Similarity=0.176  Sum_probs=26.8

Q ss_pred             hHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhHHHHH
Q 004516          178 KVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKK  240 (747)
Q Consensus       178 el~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~kele~k~~  240 (747)
                      ++++.-+.|.....+|+..+.....-+..+.++.+++...-.-+..+...-+...-+++.++.
T Consensus        82 K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~  144 (205)
T KOG1003|consen   82 KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEE  144 (205)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHH
Confidence            333444444444444444433333334445555555555444444444433333333333333

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=93.16  E-value=27  Score=42.86  Aligned_cols=28  Identities=25%  Similarity=0.264  Sum_probs=17.3

Q ss_pred             HHHHHHhhhCCCCCCChhHHHHHHHHhh
Q 004516          569 GFLHLLAAYRLAPAFDGEELESLLRIVA  596 (747)
Q Consensus       569 gFL~lla~fgl~s~fd~del~~L~~~v~  596 (747)
                      .=.|+||+=.+...|+.--+-+|=....
T Consensus       879 sTaQLVaASrVKA~k~S~~ld~L~~ask  906 (980)
T KOG0980|consen  879 STAQLVAASRVKADKDSKKLDALEVASK  906 (980)
T ss_pred             HHHHHHHHHHhhccccchhhHHHHHHHH
Confidence            3456667767777776666666655443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=93.13  E-value=27  Score=42.62  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=14.3

Q ss_pred             HHHHHHHHHhhhCCCCCCChhHHHHHHHH
Q 004516          566 EVLGFLHLLAAYRLAPAFDGEELESLLRI  594 (747)
Q Consensus       566 ea~gFL~lla~fgl~s~fd~del~~L~~~  594 (747)
                      ||..|--+=|-|.-    ..|+|..-++-
T Consensus       655 DAATFsSlRamFa~----RCdEYvtQlde  679 (717)
T PF09730_consen  655 DAATFSSLRAMFAA----RCDEYVTQLDE  679 (717)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            77777776666643    34454444433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=93.10  E-value=14  Score=41.29  Aligned_cols=41  Identities=27%  Similarity=0.336  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHh
Q 004516          102 KKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELC  142 (747)
Q Consensus       102 ~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~  142 (747)
                      ++.++..+..++..++.++...+..+...+..+....+.+.
T Consensus       142 ~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~  182 (423)
T TIGR01843       142 LRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELE  182 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=93.01  E-value=4.4  Score=49.59  Aligned_cols=29  Identities=31%  Similarity=0.253  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 004516          168 CCDEIELREKKVGEVQRSIEEHEKQLAFK  196 (747)
Q Consensus       168 ~~~El~~kekel~~~~k~ie~~~~el~~k  196 (747)
                      ...||..+=++|.+||+-|..-.++|+.-
T Consensus       731 qe~EiaaAA~KLAECQeTI~sLGkQLksL  759 (769)
T PF05911_consen  731 QEKEIAAAAEKLAECQETIASLGKQLKSL  759 (769)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35688888889999999999998887743

The function of this family is unknown.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=92.95  E-value=4.7  Score=46.28  Aligned_cols=139  Identities=18%  Similarity=0.157  Sum_probs=89.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhh-hhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004516            6 VNISEELRVAESKKEALRRSFDIARSQSNSVPVFT-GQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIE   84 (747)
Q Consensus         6 ~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~-~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~e   84 (747)
                      +-|+..|+.++.+-..+|.+-.-+.-+---+..-. .-|.....++.+++..+....+.|..+..++.....+...+..+
T Consensus       162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq  241 (596)
T KOG4360|consen  162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ  241 (596)
T ss_pred             HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666665555555444443311111111 12334456666777777777777777777777777777777777


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHhhh
Q 004516           85 LVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSV  144 (747)
Q Consensus        85 ieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~~~  144 (747)
                      |-++..++..+.-+-+.+..-|......=+.+++++...+.+..+....+++.+++|..+
T Consensus       242 l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l  301 (596)
T KOG4360|consen  242 LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL  301 (596)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            777777777777777777777777777777777788777777777777777777777543

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=92.86  E-value=30  Score=42.52  Aligned_cols=92  Identities=21%  Similarity=0.184  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHh
Q 004516          155 QKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETK  234 (747)
Q Consensus       155 ~~~L~~~~~~~ee~~~El~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~~ie~~~ke  234 (747)
                      ++.++..++.|.+...+--....+..+.+++++.........+.++.-..+.+.++..+....+.+++...+.++..+.+
T Consensus       423 e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~E  502 (980)
T KOG0980|consen  423 ENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQE  502 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            33344444444444444444444445555555444443333333333334444444444444444444444444444444


Q ss_pred             hHHHHHHHHHHH
Q 004516          235 LESEKKELELTQ  246 (747)
Q Consensus       235 le~k~~El~~~~  246 (747)
                      +.....+++..+
T Consensus       503 l~~l~~e~~~lq  514 (980)
T KOG0980|consen  503 LALLLIELEELQ  514 (980)
T ss_pred             HHHHHHHHHHHH
Confidence            444444443333

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=92.60  E-value=14  Score=38.20  Aligned_cols=54  Identities=15%  Similarity=0.284  Sum_probs=27.6

Q ss_pred             HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccchHHHHH
Q 004516          170 DEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKK  226 (747)
Q Consensus       170 ~El~~kekel~~~~k~ie~~~~el~~ke~~l~~~e~~i~e~~~EL~~KEkel~~~~~  226 (747)
                      ..|+.+-.++...++.....-.   .-...|.-.+-.+..+...|+.|.++-+++-+
T Consensus       143 ekL~~ANeei~~v~~~~~~e~~---aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtk  196 (207)
T PF05010_consen  143 EKLEKANEEIAQVRSKHQAELL---ALQASLKKEEMKVQSLEESLEQKTKENEELTK  196 (207)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555544433333   22233444455666666667777666655543

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.36  E-value=18  Score=38.78  Aligned_cols=60  Identities=17%  Similarity=0.255  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 004516          238 EKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDD  297 (747)
Q Consensus       238 k~~El~~~~~~i~e~~~ele~k~~~l~~lee~~kele~K~k~~EkeL~~~~k~l~~~~~e  297 (747)
                      .+++|+++..+|.+...++.+..++++..+..++.+..+...++..|...+..+.++.+-
T Consensus        50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA  109 (265)
T COG3883          50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA  109 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444445545455555555555555555555555444444444

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=92.33  E-value=20  Score=39.33  Aligned_cols=39  Identities=10%  Similarity=0.038  Sum_probs=17.1

Q ss_pred             HhHHHhhHHHHHHHHHHhHHHHHhhHHHhhHHhHHHHHH
Q 004516          352 KTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELK  390 (747)
Q Consensus       352 Kele~~~kele~Ke~ql~~~~~ELe~~~~~~e~~~kele  390 (747)
                      |+-..|..+.+.-...|-....+.......+..+....+
T Consensus       258 KE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~  296 (309)
T PF09728_consen  258 KENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIE  296 (309)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455444444444444444444444444333333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.27  E-value=3.8  Score=38.84  Aligned_cols=40  Identities=13%  Similarity=0.194  Sum_probs=28.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHH
Q 004516            5 TVNISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLE   47 (747)
Q Consensus         5 ~~~l~~el~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le   47 (747)
                      .+++++.|+-++.++..++.++..+...+..   +..++-.+-
T Consensus        18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~---l~~Eiv~l~   57 (120)
T PF12325_consen   18 VERLQSQLRRLEGELASLQEELARLEAERDE---LREEIVKLM   57 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            4677888888888888888888888877666   444444443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=91.97  E-value=9.4  Score=40.75  Aligned_cols=25  Identities=16%  Similarity=0.143  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc
Q 004516           11 ELRVAESKKEALRRSFDIARSQSNS   35 (747)
Q Consensus        11 el~~~e~~~~~lrk~l~~Le~~r~s   35 (747)
                      .|-.....+..++.+...+..+.+.
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~~i~~   45 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRRRIEE   45 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555555555555555555333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=91.78  E-value=8.7  Score=47.08  Aligned_cols=9  Identities=22%  Similarity=0.424  Sum_probs=3.2

Q ss_pred             HhhHHHHHH
Q 004516           43 WDDLEEHLD   51 (747)
Q Consensus        43 l~~le~el~   51 (747)
                      +.++..++.
T Consensus       239 L~~l~~ql~  247 (754)
T TIGR01005       239 LAELNTELS  247 (754)
T ss_pred             HHHHHHHHH
Confidence            333333333

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=91.62  E-value=24  Score=38.72  Aligned_cols=61  Identities=13%  Similarity=0.256  Sum_probs=34.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHhH
Q 004516          266 LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKEL  326 (747)
Q Consensus       266 lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~~e~e~~~kELe~kek~L  326 (747)
                      +..++..+..|-..|+..|..-..-+.++-.+.+...+.+..+.++-.......+.-..-|
T Consensus       214 Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l  274 (309)
T PF09728_consen  214 LREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKAL  274 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            4456666666666666666666666666666666666665555555443333333333333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PRK12704 phosphodiesterase; Provisional

Probab=91.60  E-value=34  Score=40.34  Aligned_cols=47  Identities=17%  Similarity=0.138  Sum_probs=22.0

Q ss_pred             hhhhcccCcccccCChHHHHHHHHHhhchhhhhhhhHHHHHhhCC-Cchh
Q 004516          446 LLQAKTEDPEKLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSAR-DPAL  494 (747)
Q Consensus       446 ~~~~~~l~~~c~~Md~~gL~~~~~~~~~~~~~lr~e~~~AL~~a~-DPak  494 (747)
                      +++++.++.----=+|+..+.|-..-  .++-+-++-|.+.-.+. ||-+
T Consensus       215 ~lp~d~mkgriigreGrnir~~e~~t--gvd~iiddtp~~v~ls~~~~~r  262 (520)
T PRK12704        215 NLPNDEMKGRIIGREGRNIRALETLT--GVDLIIDDTPEAVILSGFDPIR  262 (520)
T ss_pred             ecCCchhhcceeCCCcchHHHHHHHh--CCeEEEcCCCCeEEEecCChhh
Confidence            44444444333344677777774322  23344444454443333 5533

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.05  E-value=8.7  Score=38.68  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Q 004516           11 ELRVAESKKEALRRSFDIARSQ   32 (747)
Q Consensus        11 el~~~e~~~~~lrk~l~~Le~~   32 (747)
                      ++.........+.+++..++..
T Consensus        82 e~~~~~~~l~~l~~el~~l~~~  103 (191)
T PF04156_consen   82 ELSELQQQLQQLQEELDQLQER  103 (191)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444443333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=90.99  E-value=31  Score=38.71  Aligned_cols=58  Identities=14%  Similarity=0.159  Sum_probs=31.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516           62 NDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRE  119 (747)
Q Consensus        62 ~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~E  119 (747)
                      .-++....+++++...+..+..++.....+....+-+.+....++.....+-...+.+
T Consensus        67 ~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~  124 (499)
T COG4372          67 RNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQE  124 (499)
T ss_pred             hhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444556666666666666666666666666665555555555444333333333

>TIGR00634 recN DNA repair protein RecN

Probab=90.94  E-value=40  Score=39.99  Aligned_cols=29  Identities=24%  Similarity=0.276  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 004516          204 RTLIEEYEEVLKDKERPYDEVKKSLILCE  232 (747)
Q Consensus       204 e~~i~e~~~EL~~KEkel~~~~~~ie~~~  232 (747)
                      +..+..+.+++..-.+++...-..+...+
T Consensus       345 ~~~le~L~~el~~l~~~l~~~a~~Ls~~R  373 (563)
T TIGR00634       345 DESLEALEEEVDKLEEELDKAAVALSLIR  373 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555544444443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=90.53  E-value=71  Score=42.14  Aligned_cols=6  Identities=17%  Similarity=0.235  Sum_probs=2.4

Q ss_pred             cceeee
Q 004516          628 APSMLV  633 (747)
Q Consensus       628 i~Av~~  633 (747)
                      +++|.+
T Consensus      1337 ~~~V~v 1342 (1353)
T TIGR02680      1337 VDAVTV 1342 (1353)
T ss_pred             CCEEEE
Confidence            344433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=90.35  E-value=28  Score=40.31  Aligned_cols=17  Identities=6%  Similarity=0.323  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHhc
Q 004516           16 ESKKEALRRSFDIARSQ   32 (747)
Q Consensus        16 e~~~~~lrk~l~~Le~~   32 (747)
                      +.+...++..+...+..
T Consensus       167 ~~ql~~~~~~L~~ae~~  183 (498)
T TIGR03007       167 DEQIKTYEKKLEAAENR  183 (498)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444444

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=90.34  E-value=21  Score=35.71  Aligned_cols=23  Identities=17%  Similarity=0.199  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Q 004516           10 EELRVAESKKEALRRSFDIARSQ   32 (747)
Q Consensus        10 ~el~~~e~~~~~lrk~l~~Le~~   32 (747)
                      .++..++.+.-.++..+..++..
T Consensus         6 ~~i~~~Rl~~~~lk~~l~k~~~q   28 (177)
T PF13870_consen    6 NEISKLRLKNITLKHQLAKLEEQ   28 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=90.06  E-value=8.5  Score=45.30  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHH
Q 004516          159 QLLKNLIKECCDEIELREKKVGEVQRSIEEHE  190 (747)
Q Consensus       159 ~~~~~~~ee~~~El~~kekel~~~~k~ie~~~  190 (747)
                      ..+...++....+|..+.+.+++..+.++..+
T Consensus       477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         477 RARDRRIERLEKELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555555544544444444433

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=90.00  E-value=38  Score=38.56  Aligned_cols=23  Identities=0%  Similarity=0.089  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Q 004516           10 EELRVAESKKEALRRSFDIARSQ   32 (747)
Q Consensus        10 ~el~~~e~~~~~lrk~l~~Le~~   32 (747)
                      ..|..++.++.....++.....+
T Consensus       178 ~ql~~~~~~l~~ae~~l~~fr~~  200 (444)
T TIGR03017       178 QQIAALREDLARAQSKLSAYQQE  200 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444333

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.92  E-value=6  Score=43.53  Aligned_cols=70  Identities=21%  Similarity=0.178  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHh
Q 004516           73 QRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELC  142 (747)
Q Consensus        73 e~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~  142 (747)
                      +...++..++.+..++.+++..++.+...++.+-...-.....+.-++....++...+...+......+.
T Consensus        61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~  130 (314)
T PF04111_consen   61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD  130 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333333333333444444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=89.89  E-value=35  Score=37.63  Aligned_cols=87  Identities=20%  Similarity=0.289  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhhcccchHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004516          206 LIEEYEEVLKDKERPYDEVKKSLILC-ETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQEL  284 (747)
Q Consensus       206 ~i~e~~~EL~~KEkel~~~~~~ie~~-~kele~k~~El~~~~~~i~e~~~ele~k~~~l~~lee~~kele~K~k~~EkeL  284 (747)
                      .+..+...|...-..+..+...++.| ..+|+....+|......|...-.++...+.++..+.+.++.+..+...+..++
T Consensus       181 ~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI  260 (325)
T PF08317_consen  181 KLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI  260 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444455555555555 44455555555554444444444444444444444555555555555555554


Q ss_pred             HHHHHhHH
Q 004516          285 DSMRKQQK  292 (747)
Q Consensus       285 ~~~~k~l~  292 (747)
                      ...++.++
T Consensus       261 ~e~~~~~~  268 (325)
T PF08317_consen  261 AEAEKIRE  268 (325)
T ss_pred             HHHHHHHH
Confidence            44444433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.52  E-value=6.3  Score=43.38  Aligned_cols=16  Identities=13%  Similarity=0.061  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhc
Q 004516           17 SKKEALRRSFDIARSQ   32 (747)
Q Consensus        17 ~~~~~lrk~l~~Le~~   32 (747)
                      .+++.+.++...+...
T Consensus        16 ~~~~~~~~E~~~Y~~f   31 (314)
T PF04111_consen   16 KQLEQAEKERDTYQEF   31 (314)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333444433333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.38  E-value=12  Score=39.42  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=13.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004516           90 KKIEDCNGELACKKKELGLVQKRIGECKRELQLKE  124 (747)
Q Consensus        90 ~eLeElE~ele~~k~eL~~le~eI~~le~ELe~ke  124 (747)
                      .+++.+..+....-++|..+...|+.+++.+...+
T Consensus        39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~   73 (230)
T PF10146_consen   39 KEMEELLQERMAHVEELRQINQDINTLENIIKQAE   73 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333334444444444444443333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=89.22  E-value=31  Score=36.99  Aligned_cols=43  Identities=21%  Similarity=0.306  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhH
Q 004516           19 KEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDV   64 (747)
Q Consensus        19 ~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL   64 (747)
                      ++.|...+..|..++..   --.+++.++..+..-+.+.+....++
T Consensus        20 IqelE~QldkLkKE~qQ---rQfQleSlEAaLqKQKqK~e~ek~e~   62 (307)
T PF10481_consen   20 IQELEQQLDKLKKERQQ---RQFQLESLEAALQKQKQKVEEEKNEY   62 (307)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHhhhh
Confidence            33444444444444444   34456666665655555555555555

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.86  E-value=37  Score=36.48  Aligned_cols=10  Identities=30%  Similarity=0.508  Sum_probs=3.6

Q ss_pred             HHHHHHhHHH
Q 004516          179 VGEVQRSIEE  188 (747)
Q Consensus       179 l~~~~k~ie~  188 (747)
                      |+..+..+..
T Consensus       160 Le~kq~~l~~  169 (265)
T COG3883         160 LEEKQAALED  169 (265)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=88.75  E-value=4.9  Score=47.19  Aligned_cols=81  Identities=16%  Similarity=0.271  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHhhhhHHHHHHhHhhh
Q 004516           68 IRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGE---CKRELQLKENELNSLSGSLNLKKEELCSV  144 (747)
Q Consensus        68 ~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~---le~ELe~keeeL~e~~~eLe~~eeeL~~~  144 (747)
                      ...+......++.++.+++.++..+.++.++++.++.++..+..++..   ...++...+.++..++++|.++..++..+
T Consensus       421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L  500 (652)
T COG2433         421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL  500 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444445555555555555555555555555555444444332   23333344455555555555555555544


Q ss_pred             hhhh
Q 004516          145 QGWI  148 (747)
Q Consensus       145 ~~~l  148 (747)
                      .+.+
T Consensus       501 ~~~l  504 (652)
T COG2433         501 ERKL  504 (652)
T ss_pred             HHHH
Confidence            4333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=88.45  E-value=24  Score=33.75  Aligned_cols=40  Identities=15%  Similarity=0.136  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004516           47 EEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELV   86 (747)
Q Consensus        47 e~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eie   86 (747)
                      ..++..+..........+.....++.............|+
T Consensus         9 ~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE   48 (132)
T PF07926_consen    9 QSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE   48 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=88.35  E-value=29  Score=34.67  Aligned_cols=72  Identities=18%  Similarity=0.141  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhH
Q 004516           70 LLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEEL  141 (747)
Q Consensus        70 elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL  141 (747)
                      +++...-+...+...|++...++..+...+...-.-+.-++..+.....+......++......+...++++
T Consensus        43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l  114 (177)
T PF13870_consen   43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREEL  114 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555555555444444443333344444444444444444444444444444344333

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=88.33  E-value=34  Score=35.47  Aligned_cols=39  Identities=21%  Similarity=0.324  Sum_probs=23.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004516          383 IGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRV  421 (747)
Q Consensus       383 e~~~keleele~~leslE~~le~k~keLe~k~k~le~~~  421 (747)
                      ..+...+...+-++.|++..++.+.++.+.+-+-+|.+.
T Consensus       164 ~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI  202 (207)
T PF05010_consen  164 LALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI  202 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555666777776666666666665555543

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.99  E-value=6.3  Score=40.14  Aligned_cols=17  Identities=18%  Similarity=0.151  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhhhH
Q 004516           48 EHLDLTKKSLEKQSNDV   64 (747)
Q Consensus        48 ~el~el~~~iee~~~eL   64 (747)
                      .++..+.........+|
T Consensus        81 ~ELael~r~~~el~~~L   97 (194)
T PF08614_consen   81 EELAELYRSKGELAQQL   97 (194)
T ss_dssp             -----------------
T ss_pred             ccccccccccccccccc
Confidence            33333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK10869 recombination and repair protein; Provisional

Probab=87.41  E-value=70  Score=38.02  Aligned_cols=31  Identities=10%  Similarity=0.047  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 004516          203 MRTLIEEYEEVLKDKERPYDEVKKSLILCET  233 (747)
Q Consensus       203 ~e~~i~e~~~EL~~KEkel~~~~~~ie~~~k  233 (747)
                      .+..+.++..++....+++...-..+...++
T Consensus       339 ~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~  369 (553)
T PRK10869        339 QEDDLETLALAVEKHHQQALETAQKLHQSRQ  369 (553)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555666655555555555555555443

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=87.19  E-value=86  Score=38.77  Aligned_cols=27  Identities=15%  Similarity=0.124  Sum_probs=15.2

Q ss_pred             HHhhHHHhhHHhHHHHHHHHHHHHHHH
Q 004516          373 HESNLFQTRTIGYLKELKEKEKHFDSL  399 (747)
Q Consensus       373 ~ELe~~~~~~e~~~keleele~~lesl  399 (747)
                      .||..-..++.+|.+=+-.|-++|.++
T Consensus       733 ~EiaaAA~KLAECQeTI~sLGkQLksL  759 (769)
T PF05911_consen  733 KEIAAAAEKLAECQETIASLGKQLKSL  759 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456666666666665555555555443

The function of this family is unknown.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=86.95  E-value=54  Score=36.19  Aligned_cols=20  Identities=15%  Similarity=0.126  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q 004516           13 RVAESKKEALRRSFDIARSQ   32 (747)
Q Consensus        13 ~~~e~~~~~lrk~l~~Le~~   32 (747)
                      +++...+..-|+-+..++.+
T Consensus        78 ~EL~~~I~egr~~~~~~E~~   97 (325)
T PF08317_consen   78 RELKKYISEGRQIFEEIEEE   97 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555554

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=86.15  E-value=35  Score=33.19  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHhhhhhhh
Q 004516           70 LLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWI  148 (747)
Q Consensus        70 elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~~~~~~l  148 (747)
                      ..+.-....+.+...+..+..++..+...++.++.++...+.++...+.....+...+......+....+++.+++..+
T Consensus        46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~  124 (151)
T PF11559_consen   46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL  124 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555555555555555555555555555555555555555556555555655666665444333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=85.75  E-value=43  Score=35.65  Aligned_cols=30  Identities=20%  Similarity=0.169  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004516           79 ESKEIELVLVGKKIEDCNGELACKKKELGL  108 (747)
Q Consensus        79 e~lE~eieele~eLeElE~ele~~k~eL~~  108 (747)
                      ..+...+...+.++......+..++..+..
T Consensus        73 ~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~  102 (302)
T PF10186_consen   73 ERLRERIERLRKRIEQKRERLEELRESLEQ  102 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=85.68  E-value=24  Score=33.50  Aligned_cols=30  Identities=20%  Similarity=0.149  Sum_probs=10.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004516           82 EIELVLVGKKIEDCNGELACKKKELGLVQK  111 (747)
Q Consensus        82 E~eieele~eLeElE~ele~~k~eL~~le~  111 (747)
                      +.++.++..+...+-.-+.++.+++.+++.
T Consensus        74 ~~el~~l~~ry~t~LellGEK~E~veEL~~  103 (120)
T PF12325_consen   74 EQELEELQQRYQTLLELLGEKSEEVEELRA  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            333333333333333333333333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=85.62  E-value=28  Score=37.00  Aligned_cols=67  Identities=21%  Similarity=0.163  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHhHh
Q 004516           76 KEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELC  142 (747)
Q Consensus        76 kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~e~~~eLe~~eeeL~  142 (747)
                      .....++..+.++.........+...+..++..+...+..+.........+...|+.++...+..+.
T Consensus        54 ~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~  120 (246)
T PF00769_consen   54 QKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE  120 (246)
T ss_dssp             HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444555555566666666666666666666666777777777766666554

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=85.04  E-value=87  Score=36.83  Aligned_cols=53  Identities=9%  Similarity=0.112  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHH-HHHHHHHHHHHHHhhhHH
Q 004516           13 RVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLE-EHLDLTKKSLEKQSNDVD   65 (747)
Q Consensus        13 ~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le-~el~el~~~iee~~~eL~   65 (747)
                      .+++.....++..+..+...............++. +++..+.+++..+...+.
T Consensus       119 ~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~  172 (511)
T PF09787_consen  119 QELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALK  172 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            33444445555555555333333333344433332 444555665555554443

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=84.87  E-value=51  Score=34.04  Aligned_cols=93  Identities=18%  Similarity=0.280  Sum_probs=41.8

Q ss_pred             chhhhhhhHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004516           35 SVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIG  114 (747)
Q Consensus        35 si~~l~~~l~~le~el~el~~~iee~~~eL~~k~~elEe~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI~  114 (747)
                      +|.+|..++++.+.++..--..|-.+..++......+......+..+...+.....+++.++.++.....+...++..+.
T Consensus        11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~   90 (202)
T PF06818_consen   11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG   90 (202)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence            34445555555554444444444444444433333334444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHH
Q 004516          115 ECKRELQLKENEL  127 (747)
Q Consensus       115 ~le~ELe~keeeL  127 (747)
                      .++.++..++..+
T Consensus        91 ~le~El~~Lr~~l  103 (202)
T PF06818_consen   91 QLEAELAELREEL  103 (202)
T ss_pred             hhHHHHHHHHHHH
Confidence            4444444444333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=84.19  E-value=9.1  Score=39.71  Aligned_cols=37  Identities=22%  Similarity=0.171  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004516           72 DQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGL  108 (747)
Q Consensus        72 Ee~~kele~lE~eieele~eLeElE~ele~~k~eL~~  108 (747)
                      ++...+++.++.++++.+.++..++.+...+.+.+..
T Consensus       152 eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~  188 (290)
T COG4026         152 EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK  188 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444555555554444444444444444333333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=82.62  E-value=93  Score=38.25  Aligned_cols=6  Identities=50%  Similarity=0.540  Sum_probs=2.3

Q ss_pred             HHHHHH
Q 004516          248 SIKELW  253 (747)
Q Consensus       248 ~i~e~~  253 (747)
                      .|++.+
T Consensus       700 ~I~~~v  705 (717)
T PF10168_consen  700 EIDELV  705 (717)
T ss_pred             HHHHHH
Confidence            333333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=82.30  E-value=63  Score=33.11  Aligned_cols=42  Identities=14%  Similarity=-0.007  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004516           72 DQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRI  113 (747)
Q Consensus        72 Ee~~kele~lE~eieele~eLeElE~ele~~k~eL~~le~eI  113 (747)
                      ++....+..++.....+...-..++++-..+-.++..+..+-
T Consensus        70 edLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen  111 (193)
T PF14662_consen   70 EDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEEN  111 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=81.56  E-value=46  Score=31.06  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=9.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHH
Q 004516          283 ELDSMRKQQKKYFDDVELKKRELNE  307 (747)
Q Consensus       283 eL~~~~k~l~~~~~ele~kek~~e~  307 (747)
                      ......+.......++..+..++..
T Consensus        68 ~a~~e~k~~~~k~~ei~~l~~~l~~   92 (126)
T PF13863_consen   68 RAEEEKKKKEEKEAEIKKLKAELEE   92 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=81.13  E-value=73  Score=35.85  Aligned_cols=38  Identities=21%  Similarity=0.276  Sum_probs=15.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004516           91 KIEDCNGELACKKKELGLVQKRIGECKRELQLKENELN  128 (747)
Q Consensus        91 eLeElE~ele~~k~eL~~le~eI~~le~ELe~keeeL~  128 (747)
                      .++.+-.++...+.+++.++.+.......+......|.
T Consensus       267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~  304 (359)
T PF10498_consen  267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELA  304 (359)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33334444444444444444444333333333333333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=80.99  E-value=79  Score=36.29  Aligned_cols=15  Identities=20%  Similarity=0.264  Sum_probs=5.8

Q ss_pred             HHHhHhhhhHHHHHH
Q 004516          125 NELNSLSGSLNLKKE  139 (747)
Q Consensus       125 eeL~e~~~eLe~~ee  139 (747)
                      +...-|...+...++
T Consensus       410 knq~vw~~kl~~~~e  424 (493)
T KOG0804|consen  410 KNQDVWRGKLKELEE  424 (493)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            333334444433333

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=80.29  E-value=66  Score=32.05  Aligned_cols=49  Identities=18%  Similarity=0.296  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchhhhhhhHhhHHHHHHHHHHHHHHHhhhH
Q 004516           13 RVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDV   64 (747)
Q Consensus        13 ~~~e~~~~~lrk~l~~Le~~r~si~~l~~~l~~le~el~el~~~iee~~~eL   64 (747)
                      ..++.+.+.++++|..++.....   ...+.+.++......+.++.+.....
T Consensus        23 E~~R~E~~~l~~EL~evk~~v~~---~I~evD~Le~~er~aR~rL~eVS~~f   71 (159)
T PF05384_consen   23 EQARQEYERLRKELEEVKEEVSE---VIEEVDKLEKRERQARQRLAEVSRNF   71 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34445555555555555555322   44455555554445555444444333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=80.21  E-value=37  Score=38.13  Aligned_cols=92  Identities=23%  Similarity=0.320  Sum_probs=58.5

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004516          230 LCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIG  309 (747)
Q Consensus       230 ~~~kele~k~~El~~~~~~i~e~~~ele~k~~~l~~lee~~kele~K~k~~EkeL~~~~k~l~~~~~ele~kek~~e~~~  309 (747)
                      ....-+..-...|++....|...++++.++++-+|   .++..+-.+.+....+|...+..+...-.-+.....++..+.
T Consensus       231 ~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Is  307 (359)
T PF10498_consen  231 SIESALPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEIS  307 (359)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            33445555666777777778888888888888877   455555555666666666666666666666666666666655


Q ss_pred             HHHHHhhcCchhhHH
Q 004516          310 KYIEELNQDPASKDK  324 (747)
Q Consensus       310 ~e~e~~~kELe~kek  324 (747)
                      .+++....+++.+..
T Consensus       308 eeLe~vK~emeerg~  322 (359)
T PF10498_consen  308 EELEQVKQEMEERGS  322 (359)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            555544444444433

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	747
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-18
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-06
2xs1_A	704	Programmed cell death 6-interacting protein; prote	2e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	6e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	5e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-05
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	4e-05
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	1e-04
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	5e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	1e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	3e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	5e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 88.0 bits (218), Expect = 5e-18
 Identities = 45/328 (13%), Positives = 130/328 (39%), Gaps = 13/328 (3%)

Query: 8    ISEELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVK 67
              E  + AE++ + L +       + N +        +L    +  +  L  +  +++  
Sbjct: 869  TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928

Query: 68   IRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENEL 127
            +  ++ R +E E +  +L    KK++    +L          ++++ E +   Q  + E 
Sbjct: 929  LHEMEARIEEEEERSQQLQAEKKKMQQQMLDL----------EEQLEEEEAARQKLQLEK 978

Query: 128  NSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIE 187
             +  G +   ++++  ++   NK     KE +LL+  + +    +   E+K   + +   
Sbjct: 979  VTADGKIKKMEDDILIMEDQNNK---LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035

Query: 188  EHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQS 247
            +HE  ++  E ++       +E E++ +  E    ++ + +   + ++   K +L   + 
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095

Query: 248  SIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNE 307
             ++    +   E  +      ++R  E+ +  L+++L+S +  + K          EL  
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155

Query: 308  IGKYIEELNQDPASKDKELKFVQQSIKE 335
            +   +E+     A++ +      +   +
Sbjct: 1156 LKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.8 bits (189), Expect = 1e-14
 Identities = 43/315 (13%), Positives = 127/315 (40%), Gaps = 24/315 (7%)

Query: 150  KCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRT---- 205
            + Q  ++  Q  +  +KE   +     ++   +Q  ++   +  A  E     +      
Sbjct: 865  ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQE 924

Query: 206  ---LIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEK 262
               ++ E E  ++++E    +++      + ++   +++LE  +++ ++L ++  +   K
Sbjct: 925  LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984

Query: 263  LELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASK 322
            ++ ++  + + E++   L +E   + ++      ++  ++ +   + K   +     +  
Sbjct: 985  IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044

Query: 323  DKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEV-----ELKKNQFNLTQHESNL 377
            +  LK  ++S +E  K  +  + ES    + IAE   ++     +L K +  L    + L
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARL 1104

Query: 378  --FQTRTIGYLKELKEKEKHFDSLKKGLED----------RLQDLEIKEREFEKRVKEFE 425
                ++    LK+++E E H   L++ LE           + +DL  +    +  +++  
Sbjct: 1105 EDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTL 1164

Query: 426  LREKEFGSIRKAVED 440
                    +R +   
Sbjct: 1165 DTTATQQELRGSDYK 1179

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.8 bits (189), Expect = 1e-14
 Identities = 47/329 (14%), Positives = 127/329 (38%), Gaps = 3/329 (0%)

Query: 102  KKKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLL 161
            +++E+    + +   K   Q  E EL  L        EE   +Q  +        E + +
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914

Query: 162  KNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPY 221
            +  +     E    E+ + E++  IEE E++    +++   M+  + + EE L+++E   
Sbjct: 915  RVRLAAKKQE---LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971

Query: 222  DEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLE 281
             +++   +  + K++  + ++ + +    +L  +    +E++  L   +   E + ++L 
Sbjct: 972  QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031

Query: 282  QELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQ 341
            +  +       +    ++ +++   E+ K   +L  + +   +++  +Q  I E   +  
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 342  WKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKK 401
             K+EE  +    + + + +      +    +   +  Q           + EK    L +
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE 1151

Query: 402  GLEDRLQDLEIKEREFEKRVKEFELREKE 430
             LE    +LE        + +      K+
Sbjct: 1152 ELEALKTELEDTLDTTATQQELRGSDYKD 1180

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 74.9 bits (184), Expect = 7e-14
 Identities = 47/307 (15%), Positives = 124/307 (40%), Gaps = 21/307 (6%)

Query: 155  QKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVL 214
            ++E+Q     ++   +  +  E ++ E+++   +  ++    + K+ +   L  E EE+ 
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915

Query: 215  KDKERPYDEVKKSLILCETKLESE---------------------KKELELTQSSIKELW 253
                    E+++ L   E ++E E                     +++LE  +++ ++L 
Sbjct: 916  VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975

Query: 254  MKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIE 313
            ++  +   K++ ++  + + E++   L +E   + ++      ++  ++ +   + K   
Sbjct: 976  LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035

Query: 314  ELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQH 373
            +     +  +  LK  ++S +E  K  +  + ES    + IAE   ++   K Q    + 
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095

Query: 374  ESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKEFGS 433
            E      R      +     K    L+  + D  +DLE ++    K  K+     +E  +
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155

Query: 434  IRKAVED 440
            ++  +ED
Sbjct: 1156 LKTELED 1162

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 73.7 bits (181), Expect = 2e-13
 Identities = 53/336 (15%), Positives = 126/336 (37%), Gaps = 27/336 (8%)

Query: 57   LEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGEC 116
             E +  +++ K   L +    ++ K      +  + E+    LA KK+EL  +   +   
Sbjct: 876  AEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR 935

Query: 117  KRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELRE 176
              E + +  +L +    +  +  +L             +++L+  +   ++   E    +
Sbjct: 936  IEEEEERSQQLQAEKKKMQQQMLDL-------------EEQLEEEEAARQKLQLEKVTAD 982

Query: 177  KKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLE 236
             K+ +++  I   E Q      +   +   + +    L ++E     + K     + K E
Sbjct: 983  GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL----KNKHE 1038

Query: 237  SEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFD 296
            S   ELE+     ++   +    + KLE   G       ++  L+ ++  ++ Q  K   
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLE---GESSDLHEQIAELQAQIAELKAQLAK--- 1092

Query: 297  DVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAE 356
                K+ EL      +E+      +  K+++ ++  I +  ++ + +K      EK   +
Sbjct: 1093 ----KEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148

Query: 357  CSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEK 392
             S+E+E  K +   T   +   Q       K+  +K
Sbjct: 1149 LSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 62.9 bits (153), Expect = 3e-10
 Identities = 45/297 (15%), Positives = 115/297 (38%), Gaps = 4/297 (1%)

Query: 144  VQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSM 203
            V+ ++N        L      + +   + E  + K  E+QR+ E  +K  A  +      
Sbjct: 828  VRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKH 887

Query: 204  RTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKL 263
              L EE + +L++K +   E+         +L ++K+ELE     + E+  +   E+E+ 
Sbjct: 888  TQLCEE-KNLLQEKLQAETELYAEAEEMRVRLAAKKQELE---EILHEMEARIEEEEERS 943

Query: 264  ELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKD 323
            + LQ   +  + ++  LE++L+     ++K   +      ++ ++   I  +        
Sbjct: 944  QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT 1003

Query: 324  KELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTI 383
            KE K +++ + + +     ++E++ +  K   +    +   + +    +      +    
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKR 1063

Query: 384  GYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKEFGSIRKAVED 440
                E  +  +    L+  + +    L  KE E +  +   E    +  +  K + +
Sbjct: 1064 KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.1 bits (181), Expect = 1e-13
 Identities = 93/617 (15%), Positives = 179/617 (29%), Gaps = 216/617 (35%)

Query: 7   NISEELRVAESKKE------------ALRRSFDIARS-QSNSVPVFTGQWDDLEEHLDLT 53
           ++ +  +   SK+E               R F    S Q   V  F    + L  +    
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE--EVLRINYKFL 94

Query: 54  KKSLEKQSNDVDVKIRL-LDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKR 112
              ++ +     +  R+ ++QR +                   N      K  +     R
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRL-----------------YNDNQVFAKYNV----SR 133

Query: 113 IGECKRELQLKENELNSLSGSLNLKKEELCSVQG-------------------------- 146
           + +   +L+       +L   L L+  +   + G                          
Sbjct: 134 L-QPYLKLR------QAL---LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 147 --WIN--KCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISS 202
             W+N   C + +  L++L+ L      +I                 +     +    S+
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKL----LYQI-----------------DPNWTSRSDHSSN 222

Query: 203 MRTLIEEYEEVLKD--KERPY-------DEVKKSLIL------CETKLESEKKEL--ELT 245
           ++  I   +  L+   K +PY         V+ +         C+  L +  K++   L+
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 246 QSSIKELWMKFHS----EQEKLELLQGRVRLHENEVESLEQEL------------DSMRK 289
            ++   + +  HS      E   LL   ++  +   + L +E+            +S+R 
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 290 QQK--KYFDDVELKKRELNE-IGKYIEELNQDPASKDKELK--FVQQSIKECSKEFQ--- 341
                  +  V   K  L   I   +  L  +PA    E +  F + S+      F    
Sbjct: 340 GLATWDNWKHVNCDK--LTTIIESSLNVL--EPA----EYRKMFDRLSV------FPPSA 385

Query: 342 ----------WKKEESISTEKTIAECSKEVELKKN-----------QFNLTQHESNLFQ- 379
                     W           + +  K   ++K               L     N +  
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 380 -TRTIGYLKELKEKEKHFDSLKKGLEDR---------LQDLEIKER--EFEKRVKEFE-L 426
               + +    K  +   D L     D+         L+++E  ER   F     +F  L
Sbjct: 446 HRSIVDHYNIPKTFDS--DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 427 REKEFGSIRKAVEDCSK-----NLLLQAKT-------EDP--EKLTSSGRYLQFLLNQHL 472
            +K    IR      +      N L Q K         DP  E+L ++   L FL     
Sbjct: 504 EQK----IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA--ILDFLPK--- 554

Query: 473 QKHDSIFCKVFDTIKSA 489
            + + I  K  D ++ A
Sbjct: 555 IEENLICSKYTDLLRIA 571

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.9 bits (170), Expect = 2e-12
 Identities = 63/502 (12%), Positives = 159/502 (31%), Gaps = 134/502 (26%)

Query: 171 EIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLI--EEYEEVLKDKERPYDEVKKSL 228
           E + + K +  +    +        K+ +    ++++  EE + ++  K    D V  +L
Sbjct: 13  EHQYQYKDI--LSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSK----DAVSGTL 65

Query: 229 ILCETKLESEKKEL------ELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQ 282
            L  T L S+++E+      E+ + + K L     +EQ +  +     R++  + + L  
Sbjct: 66  RLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM---MTRMYIEQRDRLYN 121

Query: 283 ELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDP------------------ASKDK 324
           +     K       +V  + +   ++ + + EL                           
Sbjct: 122 DNQVFAK------YNVS-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 325 ELKFVQQSIKECSKEFQ--WKKEESISTEKTIAECSKEVELKKNQFNL-----TQHESNL 377
           ++        +C  +F+  W     +     +  C+    + +    L         S  
Sbjct: 175 KV--------QCKMDFKIFW-----L----NLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 378 FQTRTI--------GYLKELKEKEKHFDSL--------------------------KKGL 403
             +  I          L+ L + + + + L                           K +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 404 EDRLQDLEIKEREFEKRVKEFELREKEFGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRY 463
            D L          +         E +   + K ++   ++L  +  T +P +L+     
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 464 LQFLLN--QHLQKHDSIFCKVFDTIKSARDPALLVLHAISGFYPPHSRE--GDLE-F--D 516
           ++  L    + +  +       D + +  + +L VL       P   R+    L  F   
Sbjct: 337 IRDGLATWDNWKHVN------CDKLTTIIESSLNVL------EPAEYRKMFDRLSVFPPS 384

Query: 517 VSI-IRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAV-------ENSLEVL 568
             I      ++  + + +    +  ++   ++    +  K+  +++       +  LE  
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYLELKVKLENE 442

Query: 569 GFLH--LLAAYRLAPAFDGEEL 588
             LH  ++  Y +   FD ++L
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDL 464

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 6e-12
 Identities = 72/481 (14%), Positives = 149/481 (30%), Gaps = 111/481 (23%)

Query: 71  LDQRAKEIE--SKEIELVLVGKKIEDCNGELACKKKE---LGLVQKRIGECKRELQLKEN 125
           +D    E +   K+I  V     +++      CK  +     ++ K   E    +  K+ 
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDN----FDCKDVQDMPKSILSKE--EIDHIIMSKDA 60

Query: 126 ELNS--LSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQ 183
              +  L  +L  K+EE+  VQ ++   +  +   + L + IK    +  +  +   E Q
Sbjct: 61  VSGTLRLFWTLLSKQEEM--VQKFVE--EVLRINYKFLMSPIKTEQRQPSMMTRMYIE-Q 115

Query: 184 RSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEV---------KKSLILCETK 234
           R    ++ Q+ F +  +S ++    +  + L  + RP   V         K  + L    
Sbjct: 116 RDRLYNDNQV-FAKYNVSRLQ-PYLKLRQALL-ELRPAKNVLIDGVLGSGKTWVAL---- 168

Query: 235 LESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKY 294
            +         +   K  W+   +      +L+   +L      +     D      K  
Sbjct: 169 -DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS-SNIKLR 226

Query: 295 FDDVELKKRELNEIGKYIEEL----N-QDPASKDKELK-FVQQSIKECSKEFQWK----- 343
              ++ + R L +   Y   L    N Q+     K    F              K     
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNA----KAWNAF----------NLSCKILLTT 272

Query: 344 KEESISTEKTIAECSKEVELKKNQFNLTQHES-NLF-------------QTRTIGYL--- 386
           + + + T+   A  +  + L  +   LT  E  +L              +  T       
Sbjct: 273 RFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 387 ---KELKEKEKHFDSLKKGLEDRLQDL------EIKEREFEKRVKEFEL----------- 426
              + +++    +D+ K    D+L  +       ++  E+ K      +           
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 427 -----REKEFGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHL----QKHDS 477
                 +     +   V    K  L++   + P++ T S   +   L   L      H S
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVE---KQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 478 I 478
           I
Sbjct: 449 I 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 3e-10
 Identities = 61/431 (14%), Positives = 127/431 (29%), Gaps = 96/431 (22%)

Query: 16  ESKKEALRRSFDIARSQSNSVPVFTGQWD-DLEEHLDLTKKSLEKQSNDVDVKIRLLDQR 74
            S +  LRR    ++   N + V     +       +L+ K L   +    V   L    
Sbjct: 228 HSIQAELRRLL-KSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAAT 285

Query: 75  AKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGSL 134
              I      + L                +   L+ K +    ++L  +    N    S+
Sbjct: 286 TTHISLDHHSMTLT-------------PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 135 --NLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQ 192
                ++ L +   W      N  +L     +I+   + +E  E +         +   +
Sbjct: 333 IAESIRDGLATWDNWK---HVNCDKL---TTIIESSLNVLEPAEYR---------KMFDR 377

Query: 193 LA-FKES-KISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIK 250
           L+ F  S  I ++  L      ++   +    +V   +         EK+  E T  SI 
Sbjct: 378 LSVFPPSAHIPTI-LL-----SLIWF-DVIKSDVMVVVNKLHKYSLVEKQPKEST-ISI- 428

Query: 251 ELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGK 310
                  S       +   +++      +L + +       K +  D  +          
Sbjct: 429 ------PS-------IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 311 YI----EELNQDPASKDKE-------LKFVQQSIKECSKEFQWKKEESIST--------E 351
           +I    + +      +           +F++Q I+  S    W    SI          +
Sbjct: 476 HIGHHLKNIEH--PERMTLFRMVFLDFRFLEQKIRHDS--TAWNASGSILNTLQQLKFYK 531

Query: 352 KTIAECSKEVELKKNQF--NLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQD 409
             I +   + E   N     L + E NL  +             K+ D L+  L    + 
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICS-------------KYTDLLRIALMAEDEA 578

Query: 410 L-EIKEREFEK 419
           + E   ++ ++
Sbjct: 579 IFEEAHKQVQR 589

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 65.5 bits (160), Expect = 5e-11
 Identities = 41/223 (18%), Positives = 100/223 (44%), Gaps = 14/223 (6%)

Query: 136  LKKEELCSVQGWINKCQANQKELQLLKNLIKECCD------EIELREKKVGEVQRSIEEH 189
            L++ +   +Q  +    A     + LK ++   C       + EL++ K+    RS+E +
Sbjct: 862  LREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEA--RSVERY 919

Query: 190  EKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSI 249
            +K     E+KI  ++  I+E  +  K      + ++ +      KL S+ + L +++   
Sbjct: 920  KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA 979

Query: 250  KELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIG 309
            K    +  S QE++  L+  +   + E +++E+  D  + + ++   +++ +   L    
Sbjct: 980  KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK--- 1036

Query: 310  KYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEK 352
               EELN+    + KE+    +++++   E   + E  ++ E+
Sbjct: 1037 TEKEELNRRIHDQAKEI---TETMEKKLVEETKQLELDLNDER 1076

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 62.8 bits (153), Expect = 3e-10
 Identities = 40/232 (17%), Positives = 90/232 (38%), Gaps = 14/232 (6%)

Query: 160  LLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSM-------RTLIEEYEE 212
            LL+  +     ++ LRE K   +Q+ +     ++ +  +  + +       R + +   +
Sbjct: 848  LLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELK 907

Query: 213  VLKDKERPYDEVKKSLILCETK-------LESEKKELELTQSSIKELWMKFHSEQEKLEL 265
             LK + R  +  KK  I  E K       ++ + KE +     +  L + + +E EKL  
Sbjct: 908  KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967

Query: 266  LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKE 325
               R+R+ E E ++    + S++++  K   ++   + E   I ++ ++   +      E
Sbjct: 968  DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027

Query: 326  LKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNL 377
            LK     +K   +E   +  +         E     E K+ + +L       
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.4 bits (144), Expect = 4e-09
 Identities = 37/249 (14%), Positives = 95/249 (38%), Gaps = 46/249 (18%)

Query: 43   WDDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACK 102
            W     +    K  +  Q     +  +  + +  +IE++ +E      + +  +  L  K
Sbjct: 877  WLARVHYHRTLKAIVYLQCCYRRMMAKR-ELKKLKIEARSVE------RYKKLHIGLENK 929

Query: 103  KKELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLK 162
              +L   Q++I E  +E +    ++N+L  + + + E+L             + +++ L+
Sbjct: 930  IMQL---QRKIDEQNKEYKSLLEKMNNLEITYSTETEKL-------------RSDVERLR 973

Query: 163  NLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYD 222
               +E     +    +V  +Q  I +  K+L   +++  ++    ++Y+   +       
Sbjct: 974  MSEEE----AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029

Query: 223  EVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQ 282
            E           L++EK+EL       + +        +  E+ +   +    E + LE 
Sbjct: 1030 EQNT-------LLKTEKEELN------RRI------HDQAKEITETMEKKLVEETKQLEL 1070

Query: 283  ELDSMRKQQ 291
            +L+  R + 
Sbjct: 1071 DLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.4 bits (144), Expect = 4e-09
 Identities = 35/251 (13%), Positives = 100/251 (39%), Gaps = 9/251 (3%)

Query: 180  GEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEK 239
              V R   +  +        +     +  +Y+ +L++ +    +      L         
Sbjct: 828  MYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887

Query: 240  KELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVE 299
            K +   Q   + +  K   E +KL++    V  ++     LE ++  ++++       ++
Sbjct: 888  KAIVYLQCCYRRMMAK--RELKKLKIEARSVERYKKLHIGLENKIMQLQRK-------ID 938

Query: 300  LKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSK 359
             + +E   + + +  L    +++ ++L+   + ++   +E +      +S ++ IA+  K
Sbjct: 939  EQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK 998

Query: 360  EVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEK 419
            E+   + +    +  ++ ++  T   + ELKE+     + K+ L  R+ D   +  E  +
Sbjct: 999  ELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME 1058

Query: 420  RVKEFELREKE 430
            +    E ++ E
Sbjct: 1059 KKLVEETKQLE 1069

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.6 bits (116), Expect = 8e-06
 Identities = 39/294 (13%), Positives = 111/294 (37%), Gaps = 11/294 (3%)

Query: 182  VQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKE 241
            +QR +  H+ +      + +    +I++++ +   ++R Y  ++ + I  +  L      
Sbjct: 797  IQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKR-YQCMRDATIALQALLRGYLVR 855

Query: 242  LELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELK 301
             +           K    Q+ +     RV  H      +  +    R   K+    ++++
Sbjct: 856  NKYQM---MLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIE 912

Query: 302  KRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEV 361
             R +    K    L       + ++  +Q+ I E +KE++   E+  + E T +  ++++
Sbjct: 913  ARSVERYKKLHIGL-------ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965

Query: 362  ELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRV 421
                 +  +++ E+     R +   +E+ +  K     +   +   +  +  + E E+ V
Sbjct: 966  RSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLV 1025

Query: 422  KEFELREKEFGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQKH 475
             E + +     + ++ +     +   +      +KL    + L+  LN    ++
Sbjct: 1026 SELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 50.0 bits (118), Expect = 2e-06
 Identities = 44/342 (12%), Positives = 115/342 (33%), Gaps = 31/342 (9%)

Query: 110 QKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECC 169
              +     +++      N +  SLNL           + +    +    + +  I+   
Sbjct: 381 ADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVD 440

Query: 170 DEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLI 229
             I+   + +   +  ++E  + L  +E+  + +R   +E     + +  P +E+ K L 
Sbjct: 441 QLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKE-----RWQRTPSNELYKPL- 494

Query: 230 LCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRK 289
               +  + +  L+    +  ++   + S ++ + LL          + S      +   
Sbjct: 495 --RAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSAN---PAKTM 549

Query: 290 QQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESIS 349
           Q  +  + ++     L+E+ K  E L  D              +K  + +   K   +++
Sbjct: 550 QGSEVVNVLKSLLSNLDEVKKEREGLEND--------------LKSVNFDMTSKFLTALA 595

Query: 350 TEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGL------ 403
            +  I E +  V      +     +      +  G LK ++   + F  +K+        
Sbjct: 596 QDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLR 655

Query: 404 EDRLQDLEIKEREFEKRVKEFELREKEFGSIRKAVEDCSKNL 445
           E+ L++L      F + V   +   K +  + + +       
Sbjct: 656 EEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKC 697

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 40/272 (14%), Positives = 111/272 (40%), Gaps = 3/272 (1%)

Query: 44  DDLEEHLDLTKKSLEKQSNDVDVKIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKK 103
           ++  +  D  +   +   +        L    K++++ E EL    + ++D   +L   +
Sbjct: 16  ENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAE 75

Query: 104 KELGLVQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKN 163
           K+    +  +    R +QL E EL+     L    ++L   +        +++ ++++++
Sbjct: 76  KKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE---KAADESERGMKVIES 132

Query: 164 LIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDE 223
             ++  +++E++E ++ E +   E+ +++      K+  + + +E  EE  +  E    E
Sbjct: 133 RAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAE 192

Query: 224 VKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQE 283
           +++ +      L+S + + E       +   +     +KL+  + R    E  V  LE+ 
Sbjct: 193 LEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKS 252

Query: 284 LDSMRKQQKKYFDDVELKKRELNEIGKYIEEL 315
           +D +  +        +    EL+     +  +
Sbjct: 253 IDDLEDELYAQKLKYKAISEELDHALNDMTSI 284

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 39/280 (13%), Positives = 110/280 (39%)

Query: 155 QKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVL 214
           +K++Q+LK   +   D  +  E      +   ++ E +L   + K+ +    +++Y E L
Sbjct: 5   KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEAL 64

Query: 215 KDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQGRVRLHE 274
           KD +   +  +K     E  + S  + ++L +  +     +  +  +KLE  +      E
Sbjct: 65  KDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESE 124

Query: 275 NEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIK 334
             ++ +E       ++ +     ++  K    +  +  EE+ +     + +L+  ++  +
Sbjct: 125 RGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAE 184

Query: 335 ECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLKELKEKEK 394
               +    +EE  +    +     + E    + +  + E  +   +        +  E+
Sbjct: 185 LSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAER 244

Query: 395 HFDSLKKGLEDRLQDLEIKEREFEKRVKEFELREKEFGSI 434
               L+K ++D   +L  ++ +++   +E +    +  SI
Sbjct: 245 SVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 47.7 bits (113), Expect = 6e-06
 Identities = 30/264 (11%), Positives = 107/264 (40%)

Query: 148 INKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLI 207
           +++    + + +  ++  K+  DE+   +KK+   +  ++++ + L   + K+       
Sbjct: 19  LDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKA 78

Query: 208 EEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKLELLQ 267
            + E  +    R     ++ L   + +L +  ++LE  + +  E        + + +  +
Sbjct: 79  TDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDE 138

Query: 268 GRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELK 327
            ++ + E +++  +   +   ++ ++    + + + +L    +  E      A  ++E+K
Sbjct: 139 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIK 198

Query: 328 FVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGYLK 387
            V  ++K    + +   ++    E+ I   S +++  + +    +      +        
Sbjct: 199 TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 258

Query: 388 ELKEKEKHFDSLKKGLEDRLQDLE 411
           EL  ++  + ++ + L+  L D+ 
Sbjct: 259 ELYAQKLKYKAISEELDHALNDMT 282

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 30/237 (12%), Positives = 84/237 (35%), Gaps = 20/237 (8%)

Query: 182  VQRSIEEHEKQLAFKESK--ISSMRTLIEEYEEVLKDKERP----YDEVKKSLILCETKL 235
            + + I + +  L  ++    I S+++ +  ++E  K ++ P      E++      +TKL
Sbjct: 778  LVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKL 837

Query: 236  ESEKKELELTQSSI--KELWMKFHSEQEKLELLQGRVRLH---ENEVESLEQELDSMRKQ 290
               K+E  +  + +   E+   + + ++  +     +R+    + ++  L Q+ + + K+
Sbjct: 838  RLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKK 897

Query: 291  QKKYFDDVELKKRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESIST 350
             + +     +             +      +K K L+      +    +       SI  
Sbjct: 898  LENWATTKSVYLGSNET-----GDSITAVQAKLKNLEAFDGECQSLEGQSN-SDLLSILA 951

Query: 351  EKTIAECSKEVELKKNQFNLTQHESNLFQTRTIGY---LKELKEKEKHFDSLKKGLE 404
            + T    +   EL + +      +    ++    Y   L    E+ +  + L     
Sbjct: 952  QLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 23/181 (12%), Positives = 55/181 (30%), Gaps = 13/181 (7%)

Query: 137  KKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQLAFK 196
            ++  +       N+  +    L+  +    E       R+KK+  + +      K+L   
Sbjct: 842  REPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENW 901

Query: 197  ESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKF 256
             +     +++     E   D         K+L   + + +S + +      SI       
Sbjct: 902  AT----TKSVYLGSNE-TGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSIL------ 950

Query: 257  HSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKYIEELN 316
               Q       G   L E +     Q+   ++   + Y + +  +   L +I       +
Sbjct: 951  --AQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008

Query: 317  Q 317
             
Sbjct: 1009 H 1009

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 46.4 bits (109), Expect = 4e-05
 Identities = 39/408 (9%), Positives = 121/408 (29%), Gaps = 26/408 (6%)

Query: 10  EELRVAESKKEALRRSFDIARSQSNSVPVFTGQWDDLEEHLDLTKKSLEKQSNDVDVKIR 69
             L   +   E  R+   I  S ++       Q D     L   K  L+K     +  + 
Sbjct: 363 RRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHE-AFESDLA 421

Query: 70  LLDQRAKEIESKEIELV-LVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELN 128
               R ++I +   EL  L        N        +   +     + +  L+  E  L 
Sbjct: 422 AHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLE 481

Query: 129 SLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNL--IKECCDEIELREKKVGEVQRSI 186
           ++        +       W+     + ++  ++  +  I+      E  +  + +  +  
Sbjct: 482 TIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKER 541

Query: 187 EEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQ 246
           +            + +    +           +  +   + +     + +    E    Q
Sbjct: 542 QAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQ 601

Query: 247 SSIKELWMKFHSEQEKLEL-LQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKREL 305
              + L  +F ++   +   +Q ++         +   L+      ++Y   +   K ++
Sbjct: 602 QQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKI 661

Query: 306 NEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKK 365
           +++    +++ +   +   + K    +++     ++        T   +    +   L +
Sbjct: 662 DQLEGDHQQIQE---ALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEV----ENQILTR 714

Query: 366 NQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIK 413
           +   ++Q +           + E +    HFD   +     +   + +
Sbjct: 715 DAKGISQEQ-----------MNEFRASFNHFD---RKKTGMMDCEDFR 748

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 44.9 bits (105), Expect = 1e-04
 Identities = 38/412 (9%), Positives = 118/412 (28%), Gaps = 26/412 (6%)

Query: 74  RAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENELNSLSGS 133
             K  E  ++E+     + +             G +   I      L+  E         
Sbjct: 301 PPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGY---EEW 357

Query: 134 LNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHE--- 190
           L  +   L  +     K +      +   +  +    + +     + E++  +++HE   
Sbjct: 358 LLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFE 417

Query: 191 KQLAFKESKISSMRTLIEEYEEV----LKDKERPYDEVKKSLILCETKLESEKKELELTQ 246
             LA  + ++  +  + +E  E+             ++           +  ++ LE T+
Sbjct: 418 SDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTE 477

Query: 247 SSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQ-----ELDSMRKQQKKYFDDVELK 301
             ++ +   +    ++       +     +++         E+  +    +++   +   
Sbjct: 478 KLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDA 537

Query: 302 KRELNEIGKYIEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEV 361
            +E   I     E+++   +    +           +E   K E          +   E 
Sbjct: 538 DKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEE 597

Query: 362 ELKKNQFNLTQHESNLFQTRTIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEKRV 421
             ++ Q    + +   F  +       ++ K +    +     +    LE +     +  
Sbjct: 598 HARQQQNERLRKQ---FGAQANVIGPWIQTKMEEIGRI---SIEMHGTLEDQLNHLRQYE 651

Query: 422 KEFELREKEFGSIRKAVEDCSKNLLLQAKTEDPEKLTSSGRYLQFLLNQHLQ 473
           K     + +   +    +        +A   D +    +  +++    Q L 
Sbjct: 652 KSIVNYKPKIDQLEGDHQQI-----QEALIFDNKHTNYTMEHIRVGWEQLLT 698

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 45.5 bits (106), Expect = 5e-05
 Identities = 33/218 (15%), Positives = 81/218 (37%), Gaps = 9/218 (4%)

Query: 204 RTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKELWMKFHSEQEKL 263
             L  +    L ++ R      + L     +   +  E      ++++ WM F SE E++
Sbjct: 35  HRLCSDLMNCLHERARIEKAYAQQLTEWARRW-RQLVEKGPQYGTVEKAWMAFMSEAERV 93

Query: 264 ELLQGRVRLHENEVESLEQELDSMRK--QQKKYFDDVELKKRELNEIGKYIEELNQDPAS 321
                   LH     SL  +     K  Q++ +   +    +E  E      +  +  A 
Sbjct: 94  ------SELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAK 147

Query: 322 KDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKKNQFNLTQHESNLFQTR 381
           K KE++  +++     KE +       +++   +   ++++  +++    + +    + +
Sbjct: 148 KLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEK 207

Query: 382 TIGYLKELKEKEKHFDSLKKGLEDRLQDLEIKEREFEK 419
               LKEL +    +    + + ++ Q  E K   F +
Sbjct: 208 YEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFR 245

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 22/183 (12%), Positives = 62/183 (33%), Gaps = 8/183 (4%)

Query: 109 VQKRIGECKRELQLKENELNSLSGSLNLKKEELCSVQGWINKCQANQKELQLLKNLIKEC 168
           ++      + +L+L + E       L   + +  +        Q + + L++     K+ 
Sbjct: 818 LEAIYNSLQTKLRLIKREPFVAPAGLTPNEID-STWSALEKAEQEHAEALRIELKRQKKI 876

Query: 169 CDEIELREKKVGEVQRSIEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSL 228
              ++   + + +++         L   E         I   +  LK+ E    E +   
Sbjct: 877 AVLLQKYNRILKKLENWATTKSVYLGSNE-----TGDSITAVQAKLKNLEAFDGECQSLE 931

Query: 229 ILCETKLESEKKELE-LTQSSIKELWMKFHSE-QEKLELLQGRVRLHENEVESLEQELDS 286
               + L S   +L  L  + + EL  +  +   ++   ++     ++N + +  + L  
Sbjct: 932 GQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQK 991

Query: 287 MRK 289
           +  
Sbjct: 992 IED 994

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 26/174 (14%), Positives = 76/174 (43%), Gaps = 5/174 (2%)

Query: 192 QLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELTQSSIKE 251
           +++  + +I S+  LI E  + L       +   K+++  E +  + K ++   + ++++
Sbjct: 12  EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71

Query: 252 LWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRELNEIGKY 311
              K  S Q+K+  ++      E E+ SL  E D  +++  +   ++E  + E+    + 
Sbjct: 72  TNAKIASIQKKMSEIK-----SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK 126

Query: 312 IEELNQDPASKDKELKFVQQSIKECSKEFQWKKEESISTEKTIAECSKEVELKK 365
            E+L ++    +K    ++  ++   K  +  ++     ++ + E ++      
Sbjct: 127 QEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSF 180

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 22/174 (12%), Positives = 67/174 (38%), Gaps = 2/174 (1%)

Query: 133 SLNLKKEELCSVQGWINKCQANQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEHEKQ 192
             N   ++L  +     +  + +  ++  +  + +  ++ E + K +  ++      + Q
Sbjct: 2   GSNTHLKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQ 61

Query: 193 LAFKESKISSMRTLIEEYEEVLKD--KERPYDEVKKSLILCETKLESEKKELELTQSSIK 250
           ++  E  +      I   ++ + +   ER    +     + + +     +E+E  Q+ IK
Sbjct: 62  VSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIK 121

Query: 251 ELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKRE 304
               K    ++++  L+      E+ VE+  + +   ++   K  +D+  K   
Sbjct: 122 RKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEP 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	747
d1ab4a_	493	e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxI	1e-04

>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]} Length = 493

class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA Gyrase A
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 32/275 (11%)

Query: 67  KIRLLDQRAKEIESKEIELVLVGKKIEDCNGELACKKKELGLVQKRIGECKRELQLKENE 126
           K RL+++ A+ ++ K +E +     + D + +   +          + E KR+    E  
Sbjct: 241 KARLIEKIAELVKEKRVEGI---SALRDESDKDGMR---------IVIEVKRDAV-GEVV 287

Query: 127 LNSLSGSLNLKKEELCSVQGWINKCQANQKELQL-LKNLIKECCDEIELREKKVGEVQRS 185
           LN+L       + +L    G       + +   + LK++I         RE         
Sbjct: 288 LNNL-----YSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRH--RREVVTRRTIFE 340

Query: 186 IEEHEKQLAFKESKISSMRTLIEEYEEVLKDKERPYDEVKKSLILCETKLESEKKELELT 245
           + +   +    E+   ++  +    E +         E K +L+    +L +    LE  
Sbjct: 341 LRKARDRAHILEALAVALANIDPIIELIRHAPTP--AEAKTALVANPWQLGNVAAMLERA 398

Query: 246 QSSIKELWMKFHSEQEKLELLQGRVRLHENEVESLEQELDSMRKQQKKYFDDVELKKREL 305
                    +    + +  +  G   L E + +++   LD +R Q+    +  +L   E 
Sbjct: 399 GDDAA----RPEWLEPEFGVRDGLYYLTEQQAQAI---LD-LRLQKLTGLEHEKLLD-EY 449

Query: 306 NEIGKYIEELNQDPASKDKELKFVQQSIKECSKEF 340
            E+   I EL +   S D+ ++ +++ ++   ++F
Sbjct: 450 KELLDQIAELLRILGSADRLMEVIREELELVREQF 484

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00