Citrus Sinensis ID: 004552

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-----

MISREMSPASRGSSEDLQNDESSAVKFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYKDSGSDQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQVNFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINTQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATKAFRSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLSSASSLLSNEYQEALQQKTREPNLGAKLFLGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPTPADREKVKSCLSELGDLSKMFKQILNMGMEQLVATVTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIALLKL

cccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccHHHHHHHHHccccccHHHHHcccc

cccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHcccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccEEHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccccccEEEEcHHHHHHHHHHcccccHHHHHHccc

misremspasrgssedlqndessavkfgTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKadsdhmlsnvrstsdLADQVSRKVRELDLAQSRVNDTLLRIDAIVdrnncldgVKTALDEENFEAAAKFVQRFVEIDnkykdsgsdQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLysplgieeeGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQVNFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINTQNKNllnvgvsegpdpreVELYLEEILSLMQLGEDYTEFMVSKIkslssvdpalvpratkafrsgsfSKVVQEITGFYVILEGFFMVENVRKAIrideyvpdslttsmVDDVFYVLQSCLRRAISTSNISSVIAVLSSASSLLSNEYQEALQQktrepnlgaklflggvgvqkTGTEIATALNNMDVSSEYVLKLKHEIEEQCaevfptpadreKVKSCLSELGDLSKMFKQILNMGMEQLVATvtprirpvldSVATISYElseaeyadnevndpWVQRLLHAVETNAAWLqplmtannydsFVHLIIDFIVKRLEVIMMQKKFsqlgglqldrdtrasvshfssmtqRTVRDKFARLTQMATILNLEKVSEILDfwgensgpmtwrltPAEVRRVlglrvdfkPEAIALLKL

misremspasrgssedlqnDESSAVKFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADsdhmlsnvrstsdladqvSRKVReldlaqsrvndtllridaivdrnNCLDGVKTALDEENFEAAAKFVQRFVEIDNkykdsgsdqrEQLLTAKKQLEGIVKKRVlaavdqrdhgtILRFIKLysplgieeegLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQVNFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEIntqnknllnvgvsegpdPREVELYLEEILSLMQLGEDYTEFMVSKIKslssvdpalvpratkafrsgsfskvVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLSSASSLLSNEYQEALQQKTREPNLGAKLFLGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCaevfptpadreKVKSCLSELGDLSKMFKQILNMGMEQLVATvtprirpvLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSqlgglqldRDTRAsvshfssmtqrtvrdKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVlglrvdfkpeaiallkl

MISREMSPASRGSSEDLQNDESSAVKFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYKDSGSDQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQVNFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINTQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATKAFRSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAISTsnissviavlssassllsnEYQEALQQKTREPNLGAKLFLGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPTPADREKVKSCLSELGDLSKMFKQILNMGMEQLVATVTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIALLKL

*************************KFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVK**************************LDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKY*************AKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQVNFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINTQNKNLLNVGVS*****REVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATKAFRSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLSS*********************LGAKLFLGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPTPA***KVKSCLSELGDLSKMFKQILNMGMEQLVA************************YADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLD***************RTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIAL***

***********************************VRTLTDVGAMTRLLHECIAYQRALDVDLDS*****************SAEVLDIVKADSDHMLSNV*S*****DQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDN***********QLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRME*****************NFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAE**********************ELYLEEILSLMQLGEDYTEFMVSKI****************************EITGFYVILEGFFMVENVRKAI**********TTSMVDDVFYVLQSCLRRAISTSNISSVIAVLSSASSLLSNEYQEALQQKTR*******************TEIATALNNMDVSSEYVLKLKHEIEE*********ADREKVKSCLSELGDLSKMFKQILNMGMEQLVATVTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIALLKL

***********************AVKFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYKDSGSDQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQVNFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINTQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATKAFRSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLSSASSLLSNEYQEALQQKTREPNLGAKLFLGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPTPADREKVKSCLSELGDLSKMFKQILNMGMEQLVATVTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIALLKL

**************************FGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYKDSGSDQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQVNFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINTQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATKAFRSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLSSASSLLSNEYQEALQQKTREPNLGAKLFLGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPTPADREKVKSCLSELGDLSKMFKQILNMGMEQLVATVTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIALLKL

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		745	2.2.26 [Sep-21-2011]
Q8L838		738	Conserved oligomeric Golg	yes	no	0.970	0.979	0.825	0.0
Q3MHG0		785	Conserved oligomeric Golg	yes	no	0.944	0.896	0.322	1e-110
Q5R7R6		785	Conserved oligomeric Golg	yes	no	0.944	0.896	0.325	1e-110
Q8R1U1		785	Conserved oligomeric Golg	yes	no	0.944	0.896	0.321	1e-110
Q9H9E3		785	Conserved oligomeric Golg	yes	no	0.944	0.896	0.325	1e-109
Q95TN4		776	Conserved oligomeric Golg	yes	no	0.915	0.878	0.280	1e-77
Q95XZ0		801	Conserved oligomeric Golg	yes	no	0.877	0.816	0.256	8e-54
Q55FT5		911	Conserved oligomeric Golg	yes	no	0.272	0.222	0.382	2e-40
O74990		738	Conserved oligomeric Golg	yes	no	0.872	0.880	0.208	9e-21
Q06096		861	Conserved oligomeric Golg	yes	no	0.539	0.466	0.188	6e-05

>sp\|Q8L838\|COG4_ARATH Conserved oligomeric Golgi complex subunit 4 OS=Arabidopsis thaliana GN=COG4 PE=2 SV=1	Back alignment and function desciption

 Score = 1251 bits (3237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/726 (82%), Positives = 669/726 (92%), Gaps = 3/726 (0%)

Query: 21  ESSAVKFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQL 80
           +SS VKFGT +AL YVR+LTDVGAMTRLLHECIAYQR+LD DLD+LLSQRT+LD++L+QL
Sbjct: 15  DSSTVKFGTPEALEYVRSLTDVGAMTRLLHECIAYQRSLDSDLDTLLSQRTELDRNLVQL 74

Query: 81  QKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNN 140
           Q+SAE+LDIVKAD+DHML NVRST DLADQVS KVRELDLAQSRVN TL RIDAIV+R N
Sbjct: 75  QRSAEILDIVKADADHMLGNVRSTCDLADQVSGKVRELDLAQSRVNVTLSRIDAIVERGN 134

Query: 141 CLDGVKTALDEENFEAAAKFVQRFVEIDNKYKDSGSDQREQLLTAKKQLEGIVKKRVLAA 200
           C++GVKTAL+ E++E+AAKFVQRF++ID +YKDSGSDQ EQL  +K+QLEGI KK++LAA
Sbjct: 135 CIEGVKTALESEDYESAAKFVQRFLQIDLQYKDSGSDQSEQLHASKEQLEGIAKKKLLAA 194

Query: 201 VDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQ 260
           +DQRDH TILRF++LYSPLG+E EGLQ+YVGYLKKVI +R RMEY+N+VELMEQ     Q
Sbjct: 195 IDQRDHPTILRFVRLYSPLGMETEGLQLYVGYLKKVIALRGRMEYENVVELMEQGL--GQ 252

Query: 261 VNFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYR 320
           VNFVGCLTNLFKDIV+AIEENDEILRGLCGEDG+ YAICELQEECD RG LILKKYM++R
Sbjct: 253 VNFVGCLTNLFKDIVMAIEENDEILRGLCGEDGVAYAICELQEECDLRGSLILKKYMDFR 312

Query: 321 KLGKLSAEIN-TQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLS 379
           KL  L+++IN + N N+L  G SEGPDPREVELY+EEILSLMQLGEDYTEFMVSKIKSL+
Sbjct: 313 KLAILASDINNSPNLNILPGGASEGPDPREVELYVEEILSLMQLGEDYTEFMVSKIKSLT 372

Query: 380 SVDPALVPRATKAFRSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSM 439
           SVDP L+P ATKAFR+ SFSK +Q++T +YVILEGFFMVENVRKAIRIDE+VPDSLTTSM
Sbjct: 373 SVDPELLPTATKAFRNKSFSKAIQDVTRYYVILEGFFMVENVRKAIRIDEHVPDSLTTSM 432

Query: 440 VDDVFYVLQSCLRRAISTSNISSVIAVLSSASSLLSNEYQEALQQKTREPNLGAKLFLGG 499
           VDDVFYVLQSCLRRAISTSNISSVIAVLS A SLL N+Y EALQQK REPNLGA+LFLGG
Sbjct: 433 VDDVFYVLQSCLRRAISTSNISSVIAVLSYAGSLLGNDYHEALQQKIREPNLGARLFLGG 492

Query: 500 VGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPTPADREKVKSCLSELGDLSK 559
           +GV+ TGTEIATALNNMDVS EY+LKLKHEIEEQC EVFP PADRE++KSCLSELG+LS 
Sbjct: 493 IGVENTGTEIATALNNMDVSCEYILKLKHEIEEQCTEVFPAPADRERIKSCLSELGELSS 552

Query: 560 MFKQILNMGMEQLVATVTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETN 619
            FKQ+LN GMEQLVATVTPRIRPVLD+VATISYEL+E EYA+NEVNDPWVQRLLH+VETN
Sbjct: 553 TFKQLLNSGMEQLVATVTPRIRPVLDTVATISYELTETEYAENEVNDPWVQRLLHSVETN 612

Query: 620 AAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMT 679
           AAWLQPLMT+NNYDSF+HLIIDFIVKRLEVIMMQK+FSQLGGLQLDRDTRA VSHFS MT
Sbjct: 613 AAWLQPLMTSNNYDSFLHLIIDFIVKRLEVIMMQKRFSQLGGLQLDRDTRALVSHFSGMT 672

Query: 680 QRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEA 739
           QRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRV+FKPE+
Sbjct: 673 QRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVEFKPES 732

Query: 740 IALLKL 745
           IA LKL
Sbjct: 733 IAALKL 738

Required for normal Golgi function.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q3MHG0\|COG4_BOVIN Conserved oligomeric Golgi complex subunit 4 OS=Bos taurus GN=COG4 PE=2 SV=1	Back alignment and function description

>sp\|Q5R7R6\|COG4_PONAB Conserved oligomeric Golgi complex subunit 4 OS=Pongo abelii GN=COG4 PE=2 SV=1	Back alignment and function description

>sp\|Q8R1U1\|COG4_MOUSE Conserved oligomeric Golgi complex subunit 4 OS=Mus musculus GN=Cog4 PE=2 SV=1	Back alignment and function description

>sp\|Q9H9E3\|COG4_HUMAN Conserved oligomeric Golgi complex subunit 4 OS=Homo sapiens GN=COG4 PE=1 SV=3	Back alignment and function description

>sp\|Q95TN4\|COG4_DROME Conserved oligomeric Golgi complex subunit 4 OS=Drosophila melanogaster GN=CG7456 PE=1 SV=1	Back alignment and function description

>sp\|Q95XZ0\|COG4_CAEEL Conserved oligomeric Golgi complex subunit 4 OS=Caenorhabditis elegans GN=cogc-4 PE=3 SV=1	Back alignment and function description

>sp\|Q55FT5\|COG4_DICDI Conserved oligomeric Golgi complex subunit 4 OS=Dictyostelium discoideum GN=cog4 PE=3 SV=1	Back alignment and function description

>sp\|O74990\|COG4_SCHPO Conserved oligomeric Golgi complex subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cog4 PE=3 SV=1	Back alignment and function description

>sp\|Q06096\|COG4_YEAST Conserved oligomeric Golgi complex subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COG4 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		745
297810021		1162	pentatricopeptide repeat-containing prot	0.970	0.622	0.830	0.0
238480174		738	uncharacterized protein [Arabidopsis tha	0.970	0.979	0.825	0.0
359489475		1105	PREDICTED: conserved oligomeric Golgi co	0.970	0.654	0.830	0.0
240255715		1110	uncharacterized protein [Arabidopsis tha	0.970	0.651	0.825	0.0
7267637		1117	hypothetical protein [Arabidopsis thalia	0.970	0.647	0.825	0.0
356504195		1114	PREDICTED: conserved oligomeric Golgi co	0.982	0.657	0.821	0.0
357512635		747	Conserved oligomeric Golgi complex subun	0.989	0.986	0.813	0.0
449518982		751	PREDICTED: LOW QUALITY PROTEIN: conserve	0.981	0.973	0.844	0.0
449445754		751	PREDICTED: conserved oligomeric Golgi co	0.981	0.973	0.844	0.0
255548037		746	conserved hypothetical protein [Ricinus	0.993	0.991	0.817	0.0

>gi\|297810021\|ref\|XP_002872894.1\| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297318731\|gb\|EFH49153.1\| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

 Score = 1261 bits (3263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/726 (83%), Positives = 675/726 (92%), Gaps = 3/726 (0%)

Query: 21   ESSAVKFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQL 80
            +SS VKFGT +AL YVR+LTDVGAMTRLLHECIAYQR+LD DLD+LLSQRT+LD++L+QL
Sbjct: 439  DSSTVKFGTPEALEYVRSLTDVGAMTRLLHECIAYQRSLDSDLDTLLSQRTELDRNLVQL 498

Query: 81   QKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNN 140
            Q+SAE+LDIVKAD+DHML NVRST DLADQVS KVRELDLAQSRVN TL RIDAIV+R N
Sbjct: 499  QRSAEILDIVKADADHMLGNVRSTCDLADQVSGKVRELDLAQSRVNVTLSRIDAIVERGN 558

Query: 141  CLDGVKTALDEENFEAAAKFVQRFVEIDNKYKDSGSDQREQLLTAKKQLEGIVKKRVLAA 200
            C++GVKTAL+ E++E+AAKFVQRF++ID++YKDSGSDQREQL  +KKQLEGI KK++LAA
Sbjct: 559  CIEGVKTALESEDYESAAKFVQRFLQIDSQYKDSGSDQREQLRASKKQLEGIAKKKLLAA 618

Query: 201  VDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQ 260
            +DQRDH TILRF++LYSPLG+EEEGLQ+YVGYLKKVI MR RMEY+N+VELMEQ     Q
Sbjct: 619  IDQRDHPTILRFVRLYSPLGMEEEGLQLYVGYLKKVIAMRGRMEYENVVELMEQGL--GQ 676

Query: 261  VNFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYR 320
             NFVGCL NLFKDIV+AI ENDEILRGLCGEDG+VYAICELQEECDSRG LILKKYME+R
Sbjct: 677  ANFVGCLANLFKDIVMAIVENDEILRGLCGEDGVVYAICELQEECDSRGSLILKKYMEFR 736

Query: 321  KLGKLSAEIN-TQNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLS 379
            KL +L+++IN + N NLL  G SEGPDPREVELY+EEILSLMQ+GEDYTEF+VSKIKSL+
Sbjct: 737  KLARLASDINNSPNLNLLAGGASEGPDPREVELYVEEILSLMQIGEDYTEFVVSKIKSLT 796

Query: 380  SVDPALVPRATKAFRSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSM 439
            SVDP L+PRATKAFR+GSF KV+Q++TGFYVILEGFFMVENVRKAIRIDE+VPDSLTTSM
Sbjct: 797  SVDPELLPRATKAFRNGSFCKVIQDVTGFYVILEGFFMVENVRKAIRIDEHVPDSLTTSM 856

Query: 440  VDDVFYVLQSCLRRAISTSNISSVIAVLSSASSLLSNEYQEALQQKTREPNLGAKLFLGG 499
            VDDVFYVLQSCLRRAISTSNISSVIAVLS+A SLL N+Y EALQQK REPNLGA+LFLGG
Sbjct: 857  VDDVFYVLQSCLRRAISTSNISSVIAVLSNAGSLLGNDYHEALQQKIREPNLGARLFLGG 916

Query: 500  VGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPTPADREKVKSCLSELGDLSK 559
            +GV+ TGTEIATALNNMDVS EY++KLK EIEEQC EVFP PADRE++KSCLSELG+LS 
Sbjct: 917  IGVENTGTEIATALNNMDVSCEYIIKLKIEIEEQCTEVFPAPADRERIKSCLSELGELSN 976

Query: 560  MFKQILNMGMEQLVATVTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETN 619
             FKQ+LN GMEQLVATVTPRIRPVLD+VATISYEL+E EYA+NEVNDPWVQRLLH+VETN
Sbjct: 977  TFKQLLNSGMEQLVATVTPRIRPVLDTVATISYELTETEYAENEVNDPWVQRLLHSVETN 1036

Query: 620  AAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMT 679
            AAWLQPLMT+NNYDSF+HLIIDFIVKRLEVIMMQK+FSQLGGLQLDRDTRA VSHFS MT
Sbjct: 1037 AAWLQPLMTSNNYDSFLHLIIDFIVKRLEVIMMQKRFSQLGGLQLDRDTRALVSHFSGMT 1096

Query: 680  QRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEA 739
            QRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRV+FKPE+
Sbjct: 1097 QRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVEFKPES 1156

Query: 740  IALLKL 745
            I+ LKL
Sbjct: 1157 ISALKL 1162

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238480174|ref|NP_001154198.1| uncharacterized protein [Arabidopsis thaliana] gi|75154279|sp|Q8L838.1|COG4_ARATH RecName: Full=Conserved oligomeric Golgi complex subunit 4; Short=COG complex subunit 4; AltName: Full=Component of oligomeric Golgi complex 4 gi|21539537|gb|AAM53321.1| unknown protein [Arabidopsis thaliana] gi|34098793|gb|AAQ56779.1| At4g01400 [Arabidopsis thaliana] gi|332656620|gb|AEE82020.1| uncharacterized protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|359489475\|ref\|XP_002267721.2\| PREDICTED: conserved oligomeric Golgi complex subunit 4-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|240255715\|ref\|NP_192049.4\| uncharacterized protein [Arabidopsis thaliana] gi\|332656619\|gb\|AEE82019.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|7267637\|emb\|CAB80949.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356504195\|ref\|XP_003520884.1\| PREDICTED: conserved oligomeric Golgi complex subunit 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|357512635\|ref\|XP_003626606.1\| Conserved oligomeric Golgi complex subunit [Medicago truncatula] gi\|87240849\|gb\|ABD32707.1\| Conserved oligomeric Golgi complex component 4, related [Medicago truncatula] gi\|355501621\|gb\|AES82824.1\| Conserved oligomeric Golgi complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449518982\|ref\|XP_004166514.1\| PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449445754\|ref\|XP_004140637.1\| PREDICTED: conserved oligomeric Golgi complex subunit 4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255548037\|ref\|XP_002515075.1\| conserved hypothetical protein [Ricinus communis] gi\|223545555\|gb\|EEF47059.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		745
TAIR\|locus:2125152		1110	AT4G01400 "AT4G01400" [Arabido	0.970	0.651	0.803	6.5e-312
UNIPROTKB\|F1NHU0		771	COG4 "Uncharacterized protein"	0.312	0.302	0.428	1.2e-100
UNIPROTKB\|E2RR36		788	COG4 "Uncharacterized protein"	0.312	0.295	0.428	1.6e-100
UNIPROTKB\|Q9H9E3		785	COG4 "Conserved oligomeric Gol	0.312	0.296	0.432	2.3e-100
UNIPROTKB\|Q3MHG0		785	COG4 "Conserved oligomeric Gol	0.312	0.296	0.428	3.1e-100
RGD\|1310549		785	Cog4 "component of oligomeric	0.312	0.296	0.428	4.9e-100
ZFIN\|ZDB-GENE-060312-33		781	cog4 "component of oligomeric	0.353	0.336	0.443	1.8e-99
MGI\|MGI:2142808		785	Cog4 "component of oligomeric	0.312	0.296	0.428	3.4e-99
DICTYBASE\|DDB_G0267960		911	cog4 "oligomeric Golgi complex	0.271	0.221	0.384	1e-65
WB\|WBGene00021784		801	cogc-4 [Caenorhabditis elegans	0.453	0.421	0.259	1e-46

TAIR\|locus:2125152 AT4G01400 "AT4G01400" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2992 (1058.3 bits), Expect = 6.5e-312, P = 6.5e-312
 Identities = 583/726 (80%), Positives = 652/726 (89%)

Query:    21 ESSAVKFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQL 80
             +SS VKFGT +AL YVR+LTDVGAMTRLLHECIAYQR+LD DLD+LLSQRT+LD++L+QL
Sbjct:   387 DSSTVKFGTPEALEYVRSLTDVGAMTRLLHECIAYQRSLDSDLDTLLSQRTELDRNLVQL 446

Query:    81 QKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNN 140
             Q+SAE+LDIVKAD+DHML NVRST DLADQVS KVRELDLAQSRVN TL RIDAIV+R N
Sbjct:   447 QRSAEILDIVKADADHMLGNVRSTCDLADQVSGKVRELDLAQSRVNVTLSRIDAIVERGN 506

Query:   141 CLDGVKTALDEENFEAAAKFVQRFVEIDNKYKDSGSDQREQLLTAKKQLEGIVKKRVLAA 200
             C++GVKTAL+ E++E+AAKFVQRF++ID +YKDSGSDQ EQL  +K+QLEGI KK++LAA
Sbjct:   507 CIEGVKTALESEDYESAAKFVQRFLQIDLQYKDSGSDQSEQLHASKEQLEGIAKKKLLAA 566

Query:   201 VDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQ 260
             +DQRDH TILRF++LYSPLG+E EGLQ+YVGYLKKVI +R RMEY+N+VELMEQ     Q
Sbjct:   567 IDQRDHPTILRFVRLYSPLGMETEGLQLYVGYLKKVIALRGRMEYENVVELMEQGL--GQ 624

Query:   261 VNFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYR 320
             VNFVGCLTNLFKDIV+AIEENDEILRGLCGEDG+ YAICELQEECD RG LILKKYM++R
Sbjct:   625 VNFVGCLTNLFKDIVMAIEENDEILRGLCGEDGVAYAICELQEECDLRGSLILKKYMDFR 684

Query:   321 KLGKLSAEINTQ-NKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLS 379
             KL  L+++IN   N N+L  G SEGPDPREVELY+EEILSLMQLGEDYTEFMVSKIKSL+
Sbjct:   685 KLAILASDINNSPNLNILPGGASEGPDPREVELYVEEILSLMQLGEDYTEFMVSKIKSLT 744

Query:   380 SVDPALVPRATKAFRSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYVPDSLTTSM 439
             SVDP L+P ATKAFR+ SFSK +Q++T +YVILEGFFMVENVRKAIRIDE+VPDSLTTSM
Sbjct:   745 SVDPELLPTATKAFRNKSFSKAIQDVTRYYVILEGFFMVENVRKAIRIDEHVPDSLTTSM 804

Query:   440 VDDVFYVLQSCLRRAISTXXXXXXXXXXXXXXXXXXXEYQEALQQKTREPNLGAKLFLGG 499
             VDDVFYVLQSCLRRAIST                   +Y EALQQK REPNLGA+LFLGG
Sbjct:   805 VDDVFYVLQSCLRRAISTSNISSVIAVLSYAGSLLGNDYHEALQQKIREPNLGARLFLGG 864

Query:   500 VGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPTPADREKVKSCLSELGDLSK 559
             +GV+ TGTEIATALNNMDVS EY+LKLKHEIEEQC EVFP PADRE++KSCLSELG+LS 
Sbjct:   865 IGVENTGTEIATALNNMDVSCEYILKLKHEIEEQCTEVFPAPADRERIKSCLSELGELSS 924

Query:   560 MFKQILNMGMEQLVATVTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETN 619
              FKQ+LN GMEQLVATVTPRIRPVLD+VATISYEL+E EYA+NEVNDPWVQRLLH+VETN
Sbjct:   925 TFKQLLNSGMEQLVATVTPRIRPVLDTVATISYELTETEYAENEVNDPWVQRLLHSVETN 984

Query:   620 AAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMT 679
             AAWLQPLMT+NNYDSF+HLIIDFIVKRLEVIMMQK+FSQLGGLQLDRDTRA VSHFS MT
Sbjct:   985 AAWLQPLMTSNNYDSFLHLIIDFIVKRLEVIMMQKRFSQLGGLQLDRDTRALVSHFSGMT 1044

Query:   680 QRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEA 739
             QRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRV+FKPE+
Sbjct:  1045 QRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVEFKPES 1104

Query:   740 IALLKL 745
             IA LKL
Sbjct:  1105 IAALKL 1110

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB\|F1NHU0 COG4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RR36 COG4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9H9E3 COG4 "Conserved oligomeric Golgi complex subunit 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3MHG0 COG4 "Conserved oligomeric Golgi complex subunit 4" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1310549 Cog4 "component of oligomeric golgi complex 4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060312-33 cog4 "component of oligomeric golgi complex 4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:2142808 Cog4 "component of oligomeric golgi complex 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0267960 cog4 "oligomeric Golgi complex component" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

WB\|WBGene00021784 cogc-4 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3MHG0	COG4_BOVIN	No assigned EC number	0.3227	0.9449	0.8968	yes	no
Q9H9E3	COG4_HUMAN	No assigned EC number	0.3254	0.9449	0.8968	yes	no
Q8R1U1	COG4_MOUSE	No assigned EC number	0.3214	0.9449	0.8968	yes	no
Q8L838	COG4_ARATH	No assigned EC number	0.8250	0.9704	0.9796	yes	no
Q5R7R6	COG4_PONAB	No assigned EC number	0.3254	0.9449	0.8968	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.6__3570__AT4G01400.1	annotation not avaliable (1162 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		745
smart00762		324	smart00762, Cog4, COG4 transport protein	6e-97
pfam08318		330	pfam08318, COG4, COG4 transport protein	3e-90

>gnl\|CDD\|214809 smart00762, Cog4, COG4 transport protein	Back alignment and domain information

 Score =  302 bits (776), Expect = 6e-97
 Identities = 113/323 (34%), Positives = 179/323 (55%), Gaps = 22/323 (6%)

Query: 185 AKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRME 244
           A++ L  + K+R   AV  +D   + RF KL+  +G+EEEGL++Y  Y+  +I  + R  
Sbjct: 4   ARETLTELFKERFDEAVKAQDVPELTRFFKLFPLIGMEEEGLELYSKYICDIIADKARSL 63

Query: 245 YDNLVELMEQSQDQNQVNFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEE 304
            + L    + ++    V +   LT+LF+++   IE++  ++    G DG++Y I +LQ+E
Sbjct: 64  LNELAGASDDTRAA--VFYADTLTHLFENVATIIEQHQPVIEKYYGPDGMLYVITKLQKE 121

Query: 305 CDSRGCLILKKYMEYRKLGKLSAEINTQNKNLLNVGVS-----------EGPDPREVELY 353
            D +G +IL  +M+ R++ +L ++IN+ N   L+ G S           EG DPRE++  
Sbjct: 122 ADLQGGIILDTFMDERRIDRLISDINSYNHAQLHAGASNDARASSNGEDEGLDPRELDAI 181

Query: 354 LEEILSLMQLGEDYTEFMVSKIKSLSSVDPAL-----VPRATKAFRSGSFSKVVQEITGF 408
           LEEI  ++   E Y  F+  KI   +                K  R   FS  +QE+ G 
Sbjct: 182 LEEISQILSRWELYCRFISRKINEFTERSQDPEEEKQEIELPKLLRDSKFSTKIQELLGT 241

Query: 409 YVILEGFFMVENVRKAIRIDEYVPD----SLTTSMVDDVFYVLQSCLRRAISTSNISSVI 464
           YV LE ++   +V KAI++DE   D     LT+SMVDDVFY+L+  LRRA+ST NI+S+ 
Sbjct: 242 YVPLETYYFRRSVEKAIKLDELPSDEDKDPLTSSMVDDVFYLLRKVLRRALSTGNIASLT 301

Query: 465 AVLSSASSLLSNEYQEALQQKTR 487
           A ++  +S+L N+Y  ALQQ  R
Sbjct: 302 AFINELASVLQNDYLGALQQNLR 324

This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport. Length = 324

>gnl\|CDD\|219792 pfam08318, COG4, COG4 transport protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		745
KOG0412		773	consensus Golgi transport complex COD1 protein [In	100.0
PF08318		331	COG4: COG4 transport protein; InterPro: IPR013167	100.0
smart00762		324	Cog4 COG4 transport protein. This region is found	100.0
PF07393		710	Sec10: Exocyst complex component Sec10; InterPro:	100.0
KOG2180		793	consensus Late Golgi protein sorting complex, subu	99.93
KOG3745		763	consensus Exocyst subunit - Sec10p [Intracellular	99.89
COG5173		742	SEC6 Exocyst complex subunit SEC6 [Intracellular t	99.77
PF06046		566	Sec6: Exocyst complex component Sec6; InterPro: IP	99.76
PF04100		383	Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007	99.74
PF10191		766	COG7: Golgi complex component 7 (COG7); InterPro:	99.6
KOG2286		667	consensus Exocyst complex subunit SEC6 [Intracellu	99.37
PF04437		494	RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00	98.8
PF10475		291	DUF2450: Protein of unknown function N-terminal do	98.63
PF04091		311	Sec15: Exocyst complex subunit Sec15-like ; InterP	98.52
PF06248		593	Zw10: Centromere/kinetochore Zw10; InterPro: IPR00	98.25
KOG4182		828	consensus Uncharacterized conserved protein [Funct	97.96
KOG2218		737	consensus ER to golgi transport protein/RAD50-inte	97.89
KOG2163		719	consensus Centromere/kinetochore protein zw10 invo	97.33
PF15469		182	Sec5: Exocyst complex component Sec5	95.43
KOG2307		705	consensus Low density lipoprotein receptor [Intrac	94.17
PF04124		338	Dor1: Dor1-like family ; InterPro: IPR007255 Dor1	92.92
KOG2115		951	consensus Vacuolar sorting protein VPS45 [Intracel	92.77
PF04048		142	Sec8_exocyst: Sec8 exocyst complex component speci	92.72
KOG2176		800	consensus Exocyst complex, subunit SEC15 [Intracel	92.53
KOG2346		636	consensus Uncharacterized conserved protein [Funct	91.08
cd07624		200	BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o	90.71
PF14923		450	CCDC142: Coiled-coil protein 142	89.71
PF10392		132	COG5: Golgi transport complex subunit 5; InterPro:	89.23
PF05664		677	DUF810: Protein of unknown function (DUF810); Inte	88.05
PF10474		234	DUF2451: Protein of unknown function C-terminus (D	83.04
PF09325		236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	82.7
PF08700		87	Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te	81.65
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	81.19
cd07627		216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	80.99

>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=3.5e-148  Score=1206.17  Aligned_cols=715  Identities=43%  Similarity=0.677  Sum_probs=657.8

Q ss_pred             ccccccccHhhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHhhhhhHHhHHHhHHHHHHh
Q 004552           22 SSAVKFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLD-KHLLQLQKSAEVLDIVKADSDHMLSN  100 (745)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~-~~l~~L~~~~~~l~~~~~~~~~l~~~  100 (745)
                      .....++++....++.++|++++|++.++.+..+++.++++|+.+++++++++ .++..|++.+++|..+.++++++.++
T Consensus        13 ~~~~~~~~e~~~eli~d~t~i~qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~~~~~l~r~~~~L~~v~~da~el~~~   92 (773)
T KOG0412|consen   13 GVGHGSKPEKVGELIRDLTDISQIDLLLERIAREEARVDKDLEALLSQQQTIEGENMSALTRSAENLLTVEGDAKELTDA   92 (773)
T ss_pred             ccccCcccHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhhhhhhhccHHHHHHH
Confidence            55788999999999999999999999999999999999999999999999888 78899999999999999999999999


Q ss_pred             HhhhhhhHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHccccccC--------
Q 004552          101 VRSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYK--------  172 (745)
Q Consensus       101 i~~~~~~A~~is~kVr~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~--------  172 (745)
                      |.+||.+|+.||+|||+||.+|.||.+|+++|++|+|||+|++|++.||+++|||+||+||||++++++.+.        
T Consensus        93 i~nt~~lAe~Vs~kVr~lDla~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~  172 (773)
T KOG0412|consen   93 IKNTCVLAETVSGKVRALDLAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQV  172 (773)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999998754        


Q ss_pred             CCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHHHHhHHHHH
Q 004552          173 DSG---SDQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLV  249 (745)
Q Consensus       173 ~~~---~~~~~~L~~~~~~L~~~~~~~F~~A~~~~D~~~v~r~fKLfp~ig~~~eGl~~y~~yv~~~i~~~ar~~l~~~~  249 (745)
                      .|+   ++|..+|.+|+++|.++|.++|.+|++.+|.++|+||||+||+||++++||+.||.|+|++|+.+||+++..+.
T Consensus       173 ~~ts~i~~~~~~L~~a~e~L~~l~~~~f~eA~r~~D~~ei~RffKmFPliG~~~eGL~~ys~ylc~iIA~kar~~l~n~~  252 (773)
T KOG0412|consen  173 VPTSEISDPYETLKEAKERLSKLFKERFTEAVRKQDLKEITRFFKMFPLIGEEDEGLQLYSVYLCQIIASKARKNLANVK  252 (773)
T ss_pred             CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122   35999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HhhhhhccCCcccHHHHHHHHHHHHHHHHHHhHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 004552          250 ELMEQSQDQNQVNFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEI  329 (745)
Q Consensus       250 ~~~~~~~~~~~~~~~~~L~~Lfe~ia~ii~~h~~iI~~~yg~~~m~~vi~~lq~e~d~q~~~Il~~f~~~R~l~~~~~~i  329 (745)
                      +.+.+ ++...++|+++||.|||+||+||+.|+|+|++|||+++|+++|++||.|||.|+.+|++.|.+.|++..+..+|
T Consensus       253 ~~~~~-~~r~qv~fad~Lt~lfe~va~IIe~n~piie~~YG~~~li~~i~~LQ~ecD~q~s~il~~f~~~Rri~~~~~~I  331 (773)
T KOG0412|consen  253 AGMED-DNRRQVFFADTLTMLFEGVARIIEANQPILETYYGLKKLIDVIEKLQAECDLQGSLILDEFMDRRRISHLNSDI  331 (773)
T ss_pred             hcccc-CchhHhHHHHHHHHHHHHHHHHHHcccHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77655 33567899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccc-----cCCCCC-CCChhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCC-------CC----CCCchh--hh
Q 004552          330 NTQNKNLL-----NVGVSE-GPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSS-------VD----PALVPR--AT  390 (745)
Q Consensus       330 ~~~~~~~~-----~~~~~~-~~d~~~~d~ll~Eis~il~~~~lY~rFi~~~~~~~~~-------~~----~~~l~~--~~  390 (745)
                      ++|.....     +.+.-+ .+||+|+|.++.|++.|.++|++|+||+.+||+....       .+    ++..++  ..
T Consensus       332 n~~~~~~~~~~~~~~~~ie~~p~p~Eid~ii~Ei~~mn~~~emY~rF~~~ki~~~~~v~~~s~~~~~~~d~e~~~~~~~~  411 (773)
T KOG0412|consen  332 NESIHRQKNNINKNAEAIEDAPDPREIDAIITEITMMNQRSEMYSRFMSRKIGSNEVVESPSQDGDTSEDPEVRQELKCM  411 (773)
T ss_pred             hHHHHHhhcccccchhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCHHHHHHHHHH
Confidence            99886521     222122 2599999999999999999999999999999986521       11    122222  11


Q ss_pred             -hhcccCchHHHHHHHhhhHHhHHHHHHHHHHHHHHhhccCC-CCCCcchhhHHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 004552          391 -KAFRSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYV-PDSLTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLS  468 (745)
Q Consensus       391 -~~~~~~~l~~~~qel~~~Yi~Le~~~l~~Sv~KAi~~de~~-~~~~~SS~vDDvf~il~k~l~Ralstg~~~~~~a~ln  468 (745)
                       ....++.+.++||+++++|+.||+|||++||.||+.+|+.+ .|+++||||||||||+|||++||++|||++++|+++|
T Consensus       412 ~~f~n~s~~~~~mQel~~~y~~LE~yfm~esv~kAi~ld~ye~~~~~~SSmVDDV~yivrk~irRA~~T~si~~~~a~iN  491 (773)
T KOG0412|consen  412 KKFLNNSRVLTKMQELIRNYLLLEEYFMLESVQKAIKLDEYEDAGQLTSSMVDDVFYIVRKCIRRALSTSSIDSLCAFIN  491 (773)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcchhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence             12345668899999999999999999999999999999998 8899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccC-------C-ccchhhhcCCCc----cccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 004552          469 SASSLLSNEYQEALQQKTRE-------P-NLGAKLFLGGVG----VQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAE  536 (745)
Q Consensus       469 ~~~~~L~~~~~~~l~~~l~~-------~-~~~~~~~~~~~~----~~~~~~~~~~~LNn~~~s~~y~~~L~~~l~~~~~~  536 (745)
                      ++..+|++||..+|+.+++.       + +.....+++|..    +...+..|+++|||+++|++|+.+|++.++..+..
T Consensus       492 ~~~~~l~ndf~~~L~~kLrs~~~~~~sa~N~i~s~lq~~k~~~~d~d~~~~~fl~~LNn~~ls~eyi~~L~~~le~~~~~  571 (773)
T KOG0412|consen  492 EATALLDNDFLVALQSKLRSIQGGAASALNIIQSSLQAGKAEDEDADLAKENFLTALNNADLSKEYIHTLKKTLESDCTE  571 (773)
T ss_pred             HHHHHhcchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhccCcchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999983       1 111112333221    22256789999999999999999999999999999


Q ss_pred             cCCChhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-HHhhhhCchhhhhhhcccccccChHhhhhhccCChHHHHHHHH
Q 004552          537 VFPTPADREKVKSCLSELGDLSKMFKQILNMGMEQL-VATVTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHA  615 (745)
Q Consensus       537 ~f~~~~d~~~~~s~l~~l~~~~~~f~~ll~~~i~~L-~~~i~~rl~~~l~~~~~~~y~l~e~ey~~~e~~d~~~~~f~~~  615 (745)
                      .||++.|++++++|+++++.++.+|++++++|+++| .++++|||+||+++|..++|+++++||+.|+.+||||++|+..
T Consensus       572 vf~~~~d~~~l~~~l~~l~~l~~~f~~L~k~g~~~Lf~~~lkpRi~~~id~f~~is~~ls~edy~~~ea~d~~Vq~fl~~  651 (773)
T KOG0412|consen  572 VFPQNFDRAKLKSCLSNLEALSLKFKDLLKWGMEQLFSTVLKPRIRPWIDTFVNISYNLSEEDYAAYEANDPWVQQFLSS  651 (773)
T ss_pred             hcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhhhhhhhhhhccccHHHHhhhccCChHHHHHHHH
Confidence            999999999999999999999999999999999999 5667899999999999999999999999999999999999999


Q ss_pred             HHHhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhccccccchhhHHhHHHHHHHHHHhhcCcchhhhHHHHHHHHHH
Q 004552          616 VETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMAT  695 (745)
Q Consensus       616 ~~~l~~~~~~~Lt~~n~~~ll~~~~~~l~~~lE~~i~~~~fn~lGal~ldkDvr~lis~l~~~~~~~lRekF~rL~QI~~  695 (745)
                      |++++.+|++.|+|+||+.|+++++++++.+||.++||.+||+|||++||||+|++++|+|+.++|++||||+||+||++
T Consensus       652 v~~l~~~~k~~ltp~nY~sLlsl~~~~ia~~LE~~i~k~~FNrlG~lqLDre~r~lis~lt~~t~~~lRdKf~RLtQIat  731 (773)
T KOG0412|consen  652 VEQLLAELKNSLTPENYDSLLSLIVDEIATQLEQIIWKIQFNRLGGLQLDRELRALISYLTGVTQWNLRDKFARLTQIAT  731 (773)
T ss_pred             HHHHHHhhhcccChhhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchHhhHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCChhhhhhhhcCCCCCcccccCHHHHHHHHhcccCCCh
Q 004552          696 ILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKP  737 (745)
Q Consensus       696 lL~~e~~~e~~d~~~~~~~~~~w~Ls~~E~~~il~lR~Df~~  737 (745)
                      |||+|+++++.+||++++||.+|+|||+||+++|++|+||+.
T Consensus       732 LLnle~~se~le~w~~~~g~~twrLt~~EVr~vl~lr~df~~  773 (773)
T KOG0412|consen  732 LLNLEKDSEILEYWGPNSGPLTWRLTPAEVRKVLALRIDFTQ  773 (773)
T ss_pred             HHcccccchHHHhcCCCCCCceEEeCHHHHHHHHHhhccCCC
Confidence            999999999999999999999999999999999999999973

>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport []	Back alignment and domain information

>smart00762 Cog4 COG4 transport protein	Back alignment and domain information

>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins []	Back alignment and domain information

>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]	Back alignment and domain information

>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex	Back alignment and domain information

>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []	Back alignment and domain information

>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []	Back alignment and domain information

>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases	Back alignment and domain information

>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known	Back alignment and domain information

>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane	Back alignment and domain information

>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells	Back alignment and domain information

>KOG4182 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2218 consensus ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF15469 Sec5: Exocyst complex component Sec5	Back alignment and domain information

>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 []	Back alignment and domain information

>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane	Back alignment and domain information

>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2346 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30	Back alignment and domain information

>PF14923 CCDC142: Coiled-coil protein 142	Back alignment and domain information

>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking	Back alignment and domain information

>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known	Back alignment and domain information

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking	Back alignment and domain information

>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		745
3hr0_A		263	Crystal Structure Of Homo Sapiens Conserved Oligome		4e-56

>pdb|3HR0|A Chain A, Crystal Structure Of Homo Sapiens Conserved Oligomeric Golgi Subunit 4 Length = 263

Back alignment and structure

Iteration: 1

Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 103/239 (43%), Positives = 160/239 (66%), Gaps = 5/239 (2%) Query: 512 ALNNMDVSSEYVLKLKHEIEEQCAEVFPTPADRE----KVKSCLSELGDLSKMFKQILNM 567 LNN++V SE + LK +E C ++F E K SCLS+L +S F+ +L Sbjct: 25 TLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQE 84 Query: 568 GMEQLVAT-VTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPL 626 G+ +L +T + P+++P ++S ++S+ + E E+ D E NDPWVQ+ + +E A + Sbjct: 85 GLTELNSTAIKPQVQPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKAS 144 Query: 627 MTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDK 686 ++ YDS L+ + LE ++++ F++LGGLQ D++ R+ +++ +++T T+RDK Sbjct: 145 LSPVIYDSLTGLMTSLVAVELEKVVLKSTFNRLGGLQFDKELRSLIAYLTTVTTWTIRDK 204 Query: 687 FARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIALLKL 745 FARL+QMATILNLE+V+EILD+WG NSGP+TWRLTPAEVR+VL LR+DF+ E I L+L Sbjct: 205 FARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQVLALRIDFRSEDIKRLRL 263

PyMOL of 3hr0

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		745
3hr0_A		263	COG4; conserved oligomeric golgi complex, intracel	4e-83
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens} Length = 263	Back alignment and structure

 Score =  263 bits (674), Expect = 4e-83
 Identities = 103/253 (40%), Positives = 161/253 (63%), Gaps = 5/253 (1%)

Query: 498 GGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFP----TPADREKVKSCLSE 553
           G     +        LNN++V SE +  LK  +E  C ++F         + K  SCLS+
Sbjct: 11  GIESTDEAKMSFLVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSD 70

Query: 554 LGDLSKMFKQILNMGMEQLVATVT-PRIRPVLDSVATISYELSEAEYADNEVNDPWVQRL 612
           L  +S  F+ +L  G+ +L +T   P+++P ++S  ++S+ + E E+ D E NDPWVQ+ 
Sbjct: 71  LAAVSNKFRDLLQEGLTELNSTAIKPQVQPWINSFFSVSHNIEEEEFNDYEANDPWVQQF 130

Query: 613 LHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASV 672
           +  +E   A  +  ++   YDS   L+   +   LE ++++  F++LGGLQ D++ R+ +
Sbjct: 131 ILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLKSTFNRLGGLQFDKELRSLI 190

Query: 673 SHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLR 732
           ++ +++T  T+RDKFARL+QMATILNLE+V+EILD+WG NSGP+TWRLTPAEVR+VL LR
Sbjct: 191 AYLTTVTTWTIRDKFARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQVLALR 250

Query: 733 VDFKPEAIALLKL 745
           +DF+ E I  L+L
Sbjct: 251 IDFRSEDIKRLRL 263

PyMOL of 3hr0

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00